Query 005727
Match_columns 680
No_of_seqs 284 out of 685
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 1.4E-25 4.7E-30 266.4 40.0 367 29-402 87-494 (852)
2 4fdd_A Transportin-1; heat rep 99.9 8.4E-23 2.9E-27 242.5 45.8 333 29-365 171-535 (852)
3 1b3u_A Protein (protein phosph 99.9 1.9E-22 6.5E-27 226.5 28.3 377 29-420 161-547 (588)
4 2bpt_A Importin beta-1 subunit 99.9 1.2E-19 4E-24 213.4 44.9 392 25-422 258-712 (861)
5 1ibr_B P95, importin beta-1 su 99.9 3.6E-21 1.2E-25 209.6 29.4 330 30-366 88-461 (462)
6 1b3u_A Protein (protein phosph 99.9 4E-20 1.4E-24 207.6 35.8 349 27-389 198-552 (588)
7 2bpt_A Importin beta-1 subunit 99.9 4.8E-20 1.6E-24 216.7 38.1 376 24-401 403-835 (861)
8 1u6g_C TIP120 protein, CAND1; 99.9 4.1E-19 1.4E-23 218.8 46.2 392 28-420 82-597 (1230)
9 1qgr_A Protein (importin beta 99.9 1.8E-19 6.1E-24 212.3 41.1 350 30-387 88-481 (876)
10 1qgr_A Protein (importin beta 99.9 2.2E-18 7.6E-23 202.9 45.6 390 26-421 252-722 (876)
11 1u6g_C TIP120 protein, CAND1; 99.9 4.6E-19 1.6E-23 218.3 39.8 396 25-423 248-723 (1230)
12 1ibr_B P95, importin beta-1 su 99.8 2.6E-16 8.9E-21 171.1 33.4 341 43-389 48-441 (462)
13 2vgl_B AP-2 complex subunit be 99.7 2.9E-15 9.8E-20 171.6 32.0 315 27-368 116-439 (591)
14 2jdq_A Importin alpha-1 subuni 99.7 7.8E-16 2.7E-20 167.3 25.8 351 34-385 22-390 (450)
15 2jdq_A Importin alpha-1 subuni 99.7 6.6E-16 2.2E-20 167.9 20.9 315 32-349 64-390 (450)
16 1wa5_B Importin alpha subunit; 99.7 2.6E-15 9E-20 168.6 23.1 354 30-386 85-458 (530)
17 1wa5_B Importin alpha subunit; 99.7 1.6E-15 5.6E-20 170.3 20.0 315 31-349 129-457 (530)
18 4b8j_A Importin subunit alpha- 99.6 5.1E-15 1.7E-19 165.9 21.1 315 32-349 117-443 (528)
19 2qk2_A LP04448P; mini spindles 99.6 1.1E-14 3.9E-19 147.2 21.4 192 30-269 13-208 (242)
20 2vgl_B AP-2 complex subunit be 99.6 5.4E-14 1.8E-18 161.0 28.7 347 30-403 47-402 (591)
21 4b8j_A Importin subunit alpha- 99.6 8.5E-15 2.9E-19 164.0 21.5 319 31-350 73-401 (528)
22 2qk2_A LP04448P; mini spindles 99.6 1.1E-14 3.9E-19 147.2 18.7 208 143-360 6-218 (242)
23 1oyz_A Hypothetical protein YI 99.6 1.2E-13 4E-18 142.0 23.4 255 31-346 22-279 (280)
24 1w63_A Adapter-related protein 99.6 3.8E-13 1.3E-17 154.9 30.0 330 27-387 137-492 (618)
25 2qk1_A Protein STU2; STU2P, XM 99.6 1.1E-13 3.8E-18 141.9 21.3 216 143-361 7-234 (249)
26 1wa5_C Importin alpha RE-expor 99.6 1.2E-12 4E-17 157.8 31.3 349 30-386 83-526 (960)
27 2vgl_A Adaptor protein complex 99.5 2.7E-12 9.2E-17 148.1 28.3 317 26-368 140-490 (621)
28 2z6h_A Catenin beta-1, beta-ca 99.5 5.3E-11 1.8E-15 137.2 36.7 350 30-385 12-382 (644)
29 2qk1_A Protein STU2; STU2P, XM 99.5 1.1E-12 3.9E-17 134.4 19.1 198 31-270 15-224 (249)
30 1jdh_A Beta-catenin; beta-cate 99.5 9.4E-11 3.2E-15 130.0 36.1 349 29-385 14-385 (529)
31 2vgl_A Adaptor protein complex 99.5 4.1E-12 1.4E-16 146.6 25.4 353 32-403 74-453 (621)
32 2z6g_A B-catenin; FULL-length, 99.5 5.6E-11 1.9E-15 140.5 35.5 347 31-385 149-518 (780)
33 1w63_A Adapter-related protein 99.5 6E-12 2.1E-16 144.9 26.1 345 30-402 68-433 (618)
34 2z6g_A B-catenin; FULL-length, 99.5 5.7E-11 2E-15 140.4 34.2 377 34-423 117-520 (780)
35 3ibv_A Exportin-T; karyopherin 99.5 6.6E-12 2.2E-16 151.8 26.3 352 43-401 101-588 (980)
36 3ul1_B Importin subunit alpha- 99.4 4E-11 1.4E-15 134.7 30.6 382 75-480 59-476 (510)
37 2iw3_A Elongation factor 3A; a 99.4 6.7E-12 2.3E-16 149.9 25.0 251 32-291 54-357 (986)
38 1oyz_A Hypothetical protein YI 99.4 6.1E-11 2.1E-15 121.6 27.8 253 115-416 24-277 (280)
39 2x19_B Importin-13; nuclear tr 99.4 8.3E-11 2.9E-15 141.0 33.1 368 44-423 115-601 (963)
40 3tpo_A Importin subunit alpha- 99.4 1.2E-10 4.1E-15 131.2 31.5 385 75-480 78-495 (529)
41 3ltj_A Alpharep-4; protein eng 99.4 7.5E-12 2.6E-16 122.1 18.3 187 27-264 9-196 (201)
42 2x19_B Importin-13; nuclear tr 99.4 2.2E-09 7.6E-14 128.7 42.7 363 27-400 485-908 (963)
43 3ltm_A Alpha-REP4; protein eng 99.4 9E-12 3.1E-16 122.4 18.1 182 31-263 18-200 (211)
44 3ul1_B Importin subunit alpha- 99.4 1.3E-11 4.5E-16 138.7 21.6 307 33-348 101-429 (510)
45 3m1i_C Exportin-1; heat repeat 99.4 2.8E-10 9.5E-15 138.5 33.9 333 45-388 113-572 (1049)
46 3ltm_A Alpha-REP4; protein eng 99.4 2.7E-11 9.2E-16 119.0 19.8 187 113-350 18-204 (211)
47 2x1g_F Cadmus; transport prote 99.4 4.1E-10 1.4E-14 135.4 32.9 313 27-348 500-857 (971)
48 2z6h_A Catenin beta-1, beta-ca 99.3 2.7E-10 9.1E-15 131.3 29.4 331 32-368 56-406 (644)
49 2x1g_F Cadmus; transport prote 99.3 7.1E-10 2.4E-14 133.4 33.9 352 27-389 343-764 (971)
50 3now_A UNC-45 protein, SD10334 99.3 1.2E-10 4E-15 137.3 26.3 378 35-420 333-781 (810)
51 3tpo_A Importin subunit alpha- 99.3 3.7E-11 1.3E-15 135.4 20.6 311 32-348 119-448 (529)
52 3ltj_A Alpharep-4; protein eng 99.3 7.7E-11 2.6E-15 114.8 19.6 185 113-348 13-197 (201)
53 3now_A UNC-45 protein, SD10334 99.3 1.4E-09 4.8E-14 128.1 32.8 395 31-435 289-748 (810)
54 1jdh_A Beta-catenin; beta-cate 99.3 5.4E-11 1.9E-15 132.0 19.6 328 32-370 59-411 (529)
55 4hxt_A De novo protein OR329; 99.2 8.2E-11 2.8E-15 117.1 15.6 236 33-268 3-243 (252)
56 4hxt_A De novo protein OR329; 99.2 1.2E-10 3.9E-15 116.1 15.0 235 115-349 3-241 (252)
57 1wa5_C Importin alpha RE-expor 99.2 8.7E-09 3E-13 124.1 32.8 315 43-368 416-773 (960)
58 4db8_A Armadillo-repeat protei 99.2 1E-09 3.6E-14 110.0 18.7 233 74-349 13-251 (252)
59 4db8_A Armadillo-repeat protei 99.1 3E-10 1E-14 114.0 12.8 231 33-263 13-248 (252)
60 4hat_C Exportin-1; heat repeat 99.1 6.7E-08 2.3E-12 117.3 35.4 268 114-388 235-572 (1023)
61 3a6p_A Exportin-5; exportin-5, 99.0 2.3E-07 7.7E-12 114.7 36.3 355 44-404 108-638 (1204)
62 1xm9_A Plakophilin 1; armadill 99.0 2.6E-08 9.1E-13 110.3 24.0 307 33-351 3-408 (457)
63 3l6x_A Catenin delta-1; cateni 99.0 3.9E-07 1.3E-11 104.0 33.5 310 29-349 45-432 (584)
64 4db6_A Armadillo repeat protei 99.0 4.1E-09 1.4E-13 102.8 14.4 195 30-224 10-208 (210)
65 2iw3_A Elongation factor 3A; a 98.9 8E-08 2.7E-12 115.0 24.7 256 86-348 28-326 (986)
66 3ibv_A Exportin-T; karyopherin 98.9 9.4E-07 3.2E-11 106.9 32.1 366 27-400 327-782 (980)
67 3nmz_A APC variant protein; pr 98.9 2E-07 7E-12 103.6 23.2 314 31-350 69-451 (458)
68 3m1i_C Exportin-1; heat repeat 98.8 2.7E-05 9.1E-10 94.7 42.7 296 27-327 339-695 (1049)
69 4db6_A Armadillo repeat protei 98.8 9E-09 3.1E-13 100.3 9.8 192 155-349 12-209 (210)
70 1xm9_A Plakophilin 1; armadill 98.8 1E-06 3.5E-11 97.5 26.3 273 75-350 4-361 (457)
71 4ffb_C Protein STU2; tubulin f 98.7 5.7E-07 2E-11 92.7 19.7 186 80-270 16-216 (278)
72 4ffb_C Protein STU2; tubulin f 98.7 2E-07 7E-12 96.1 14.0 191 116-348 12-211 (278)
73 3gjx_A Exportin-1; transport, 98.6 1.1E-05 3.6E-10 98.3 30.0 332 44-386 124-596 (1073)
74 2of3_A ZYG-9; multifunctional 98.6 1.3E-06 4.6E-11 90.0 16.9 174 164-348 55-235 (266)
75 4hat_C Exportin-1; heat repeat 98.6 0.00036 1.2E-08 84.7 40.7 354 34-389 346-793 (1023)
76 3l6x_A Catenin delta-1; cateni 98.5 1.5E-05 5E-10 91.0 26.4 312 32-349 90-476 (584)
77 3nmz_A APC variant protein; pr 98.5 3.7E-06 1.3E-10 93.4 19.5 253 133-387 167-452 (458)
78 2of3_A ZYG-9; multifunctional 98.5 7E-06 2.4E-10 84.7 19.8 195 33-237 47-248 (266)
79 1xqr_A HSPBP1 protein; armadil 98.4 3.4E-06 1.2E-10 88.4 16.8 188 32-222 81-284 (296)
80 2db0_A 253AA long hypothetical 98.4 2.4E-05 8.2E-10 75.7 20.8 208 150-375 27-236 (253)
81 3nmw_A APC variant protein; AR 98.4 4.7E-06 1.6E-10 89.5 18.0 223 127-350 97-335 (354)
82 3opb_A SWI5-dependent HO expre 98.4 0.00022 7.4E-09 83.3 31.8 335 46-387 308-730 (778)
83 3tjz_B Coatomer subunit gamma; 98.4 1.6E-06 5.3E-11 93.2 12.8 283 32-347 68-351 (355)
84 3nmw_A APC variant protein; AR 98.3 6.4E-06 2.2E-10 88.5 15.7 226 33-266 74-334 (354)
85 3opb_A SWI5-dependent HO expre 98.3 6.2E-05 2.1E-09 87.8 24.1 317 30-349 332-728 (778)
86 1te4_A Conserved protein MTH18 98.3 7.1E-08 2.4E-12 88.1 -0.4 120 30-181 10-130 (131)
87 2db0_A 253AA long hypothetical 98.3 0.00025 8.5E-09 68.8 23.7 216 27-264 27-244 (253)
88 1xqr_A HSPBP1 protein; armadil 98.2 9.5E-06 3.2E-10 85.1 13.8 195 154-350 27-239 (296)
89 4ady_A RPN2, 26S proteasome re 98.2 0.00044 1.5E-08 82.4 28.9 286 32-366 392-698 (963)
90 4ady_A RPN2, 26S proteasome re 98.2 0.00095 3.3E-08 79.5 30.4 275 33-347 430-717 (963)
91 1lrv_A LRV, leucine-rich repea 98.1 9.1E-07 3.1E-11 90.4 3.5 185 39-344 57-241 (244)
92 3b2a_A TON_1937, putative unch 98.1 0.00045 1.5E-08 69.4 22.3 220 33-264 34-259 (265)
93 3gjx_A Exportin-1; transport, 98.1 0.0014 4.8E-08 79.8 31.1 348 17-387 551-955 (1073)
94 3oc3_A Helicase MOT1, MOT1; re 98.0 5.2E-05 1.8E-09 84.3 14.7 239 33-303 175-431 (800)
95 1te4_A Conserved protein MTH18 97.9 7.3E-06 2.5E-10 74.6 4.1 118 72-221 11-129 (131)
96 3b2a_A TON_1937, putative unch 97.8 0.0027 9.2E-08 63.8 21.8 220 115-345 34-257 (265)
97 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00019 6.4E-09 80.0 13.9 232 108-362 169-416 (800)
98 3tjz_B Coatomer subunit gamma; 97.7 3.3E-05 1.1E-09 82.9 7.2 212 27-259 134-346 (355)
99 1lrv_A LRV, leucine-rich repea 97.6 1.5E-05 5E-10 81.4 2.1 164 37-304 79-242 (244)
100 3a6p_A Exportin-5; exportin-5, 97.6 0.021 7.3E-07 70.5 29.9 325 33-367 250-682 (1204)
101 3l9t_A Putative uncharacterize 97.6 0.0023 8E-08 64.4 17.1 154 8-184 52-207 (240)
102 1vsy_5 Proteasome activator BL 97.5 0.00028 9.6E-09 85.2 11.4 318 27-365 503-892 (997)
103 1vsy_5 Proteasome activator BL 96.9 0.011 3.8E-07 71.4 15.8 204 132-348 735-965 (997)
104 3l9t_A Putative uncharacterize 96.7 0.12 4.3E-06 51.9 19.2 140 161-319 77-218 (240)
105 3grl_A General vesicular trans 96.6 0.15 5E-06 58.4 21.8 307 27-351 20-396 (651)
106 3tt9_A Plakophilin-2; cell adh 96.6 0.0079 2.7E-07 60.7 10.3 191 196-388 8-232 (233)
107 3tt9_A Plakophilin-2; cell adh 96.2 0.028 9.6E-07 56.6 11.6 142 33-183 9-179 (233)
108 4gmo_A Putative uncharacterize 96.1 0.021 7.3E-07 66.2 11.6 151 34-184 36-214 (684)
109 3gs3_A Symplekin, LD45768P; he 95.6 2.4 8.2E-05 43.1 24.8 122 101-226 40-174 (257)
110 3u0r_A Apoptosis inhibitor 5; 95.5 2.3 8E-05 46.9 23.5 131 75-224 31-162 (507)
111 4atg_A TAF6; transcription, TF 95.2 0.33 1.1E-05 47.5 14.1 159 147-322 7-177 (196)
112 3grl_A General vesicular trans 94.9 0.86 3E-05 52.1 18.5 175 193-370 18-222 (651)
113 3u0r_A Apoptosis inhibitor 5; 94.8 1.1 3.9E-05 49.3 18.5 82 12-101 47-129 (507)
114 3gs3_A Symplekin, LD45768P; he 94.7 4.2 0.00015 41.3 26.1 175 151-360 49-255 (257)
115 4gmo_A Putative uncharacterize 94.4 0.6 2.1E-05 53.9 16.4 69 115-184 36-105 (684)
116 3o2t_A Symplekin; heat repeat, 94.4 6.7 0.00023 42.2 24.9 217 27-254 58-327 (386)
117 4atg_A TAF6; transcription, TF 94.1 0.99 3.4E-05 44.1 14.6 141 65-222 7-159 (196)
118 3o2t_A Symplekin; heat repeat, 94.0 8 0.00027 41.6 29.2 274 101-427 50-327 (386)
119 1w9c_A CRM1 protein, exportin 94.0 6.3 0.00022 41.3 21.3 216 212-435 45-311 (321)
120 1upk_A MO25 protein; transfera 92.8 1.6 5.3E-05 46.1 14.4 229 154-387 77-334 (341)
121 1lsh_A Lipovitellin (LV-1N, LV 90.0 9 0.00031 46.5 19.2 183 236-431 390-587 (1056)
122 3fga_B Serine/threonine-protei 88.6 8.8 0.0003 41.4 15.8 217 114-361 129-379 (403)
123 1vsy_4 Proteasome activator BL 88.4 45 0.0015 39.2 25.3 196 30-225 230-455 (799)
124 3ebb_A Phospholipase A2-activa 88.2 24 0.00084 36.4 18.5 152 280-433 104-275 (304)
125 1upk_A MO25 protein; transfera 87.3 32 0.0011 36.2 20.6 193 28-227 74-285 (341)
126 1vsy_4 Proteasome activator BL 85.2 65 0.0022 37.8 30.1 115 25-142 332-454 (799)
127 3eg5_B Protein diaphanous homo 84.8 7 0.00024 41.9 12.5 173 320-532 162-344 (383)
128 2npp_B PP2A, B subunit, serine 83.4 50 0.0017 36.1 18.6 239 10-267 135-400 (449)
129 3fga_B Serine/threonine-protei 83.2 54 0.0019 35.3 20.0 241 10-267 102-367 (403)
130 3jxy_A Alkylpurine DNA glycosy 82.8 13 0.00045 36.7 12.8 182 140-349 12-195 (232)
131 3ldz_A STAM-1, signal transduc 82.7 4.8 0.00016 36.9 8.7 75 115-189 43-119 (140)
132 2bnx_A Diaphanous protein homo 81.9 35 0.0012 36.4 16.6 175 319-533 99-283 (386)
133 1x5b_A Signal transducing adap 80.8 8 0.00027 36.4 9.8 77 113-189 51-130 (163)
134 3eg5_B Protein diaphanous homo 78.0 19 0.00066 38.4 12.9 71 278-348 161-245 (383)
135 2npp_B PP2A, B subunit, serine 77.4 51 0.0018 36.0 16.1 84 227-315 316-406 (449)
136 1w9c_A CRM1 protein, exportin 77.2 74 0.0025 33.2 19.8 179 130-308 45-248 (321)
137 3s4w_B Protein FACD2, fanconi 77.1 1.5E+02 0.0052 36.7 29.4 115 229-348 392-506 (1323)
138 3g2s_A C-terminal fragment of 76.6 16 0.00055 33.8 10.3 76 113-188 47-130 (149)
139 2fv2_A RCD1 required for cell 74.0 70 0.0024 32.4 14.7 89 173-262 71-170 (268)
140 2f31_A Diaphanous protein homo 73.7 8.5 0.00029 38.1 8.1 96 319-435 95-193 (233)
141 1ho8_A Vacuolar ATP synthase s 73.1 1.2E+02 0.004 33.5 19.3 149 117-266 274-476 (480)
142 1dvp_A HRS, hepatocyte growth 72.4 14 0.00049 36.2 9.4 78 113-190 41-121 (220)
143 1mhq_A ADP-ribosylation factor 72.1 23 0.0008 32.6 10.2 74 115-188 39-120 (148)
144 1elk_A Target of MYB1; superhe 67.2 35 0.0012 31.6 10.4 76 114-189 53-135 (157)
145 1lsh_A Lipovitellin (LV-1N, LV 62.3 2.7E+02 0.0091 33.6 29.0 168 155-349 391-576 (1056)
146 3g2s_A C-terminal fragment of 61.3 71 0.0024 29.4 11.1 71 278-348 47-125 (149)
147 3ldz_A STAM-1, signal transduc 60.4 29 0.00098 31.6 8.2 71 278-348 41-113 (140)
148 2b6c_A Hypothetical protein EF 59.3 71 0.0024 31.0 11.5 176 146-349 12-188 (220)
149 1vdy_A Hypothetical protein (R 58.2 19 0.00065 33.1 6.5 71 194-264 47-128 (140)
150 1juq_A ADP-ribosylation factor 57.9 34 0.0012 32.3 8.5 74 114-187 50-131 (171)
151 1mhq_A ADP-ribosylation factor 56.7 1E+02 0.0036 28.1 11.4 71 278-348 37-115 (148)
152 3zyq_A Hepatocyte growth facto 55.9 43 0.0015 32.9 9.2 78 112-189 43-123 (226)
153 3jxy_A Alkylpurine DNA glycosy 53.5 55 0.0019 32.1 9.6 75 156-236 132-206 (232)
154 1x5b_A Signal transducing adap 51.5 50 0.0017 30.9 8.4 71 278-348 51-124 (163)
155 1juq_A ADP-ribosylation factor 50.6 1.3E+02 0.0046 28.1 11.3 71 278-348 49-127 (171)
156 2jak_A Serine/threonine-protei 49.1 2E+02 0.0068 30.8 13.6 184 114-345 174-363 (392)
157 1vdy_A Hypothetical protein (R 47.3 38 0.0013 31.1 6.6 71 112-182 47-128 (140)
158 4flb_A Regulation of nuclear P 43.5 1.5E+02 0.0052 26.0 10.1 101 235-345 6-111 (132)
159 3dad_A FH1/FH2 domain-containi 41.5 3.3E+02 0.011 28.5 13.6 111 75-186 162-288 (339)
160 3dad_A FH1/FH2 domain-containi 41.4 2.2E+02 0.0074 29.9 12.1 104 36-141 164-284 (339)
161 1dvp_A HRS, hepatocyte growth 39.1 2.7E+02 0.0093 26.8 12.0 74 193-269 39-118 (220)
162 2x6h_A GH13170P, VPS34, phosph 37.4 43 0.0015 38.7 6.5 46 111-161 108-153 (696)
163 1elk_A Target of MYB1; superhe 33.7 1.3E+02 0.0044 27.7 8.1 71 278-348 52-129 (157)
164 2fv2_A RCD1 required for cell 32.8 4E+02 0.014 26.9 12.8 104 293-400 116-236 (268)
165 3s4w_B Protein FACD2, fanconi 29.6 9E+02 0.031 30.0 22.9 168 123-296 354-537 (1323)
166 2a9i_A IRAK-4, interleukin-1 r 29.5 92 0.0031 27.3 5.9 32 377-408 16-48 (113)
167 2p6v_A Transcription initiatio 28.2 2.1E+02 0.0073 25.1 7.8 81 152-255 21-103 (114)
168 3zyq_A Hepatocyte growth facto 27.8 1.9E+02 0.0065 28.2 8.6 72 277-348 43-117 (226)
169 3rru_A TOM1L1 protein; structu 26.4 1.4E+02 0.0047 27.5 6.9 75 115-189 54-135 (152)
170 3bu8_A Telomeric repeat-bindin 26.0 4.8E+02 0.017 25.6 12.6 113 391-578 61-188 (235)
171 3ls8_A Phosphatidylinositol 3- 24.6 43 0.0015 38.1 3.6 33 126-161 107-139 (614)
172 2bnx_A Diaphanous protein homo 23.2 6.6E+02 0.023 26.3 15.4 33 278-310 99-131 (386)
173 3ebb_A Phospholipase A2-activa 22.8 6.1E+02 0.021 25.7 14.0 115 31-145 146-265 (304)
174 3pst_A Protein DOA1; protein d 21.7 4.2E+02 0.014 28.6 10.4 142 278-427 227-395 (425)
175 1e7u_A Phosphatidylinositol 3- 21.6 45 0.0016 40.0 3.1 42 115-161 486-527 (961)
176 3qml_C Protein SLS1, nucleotid 21.5 3.5E+02 0.012 28.0 9.4 142 71-223 24-187 (315)
177 1ho8_A Vacuolar ATP synthase s 21.2 8.3E+02 0.028 26.7 12.8 70 278-348 394-475 (480)
178 1wh4_A IRAK4, interleukin-1 re 20.8 1.6E+02 0.0055 26.3 5.9 32 377-408 23-55 (127)
179 3ut4_A CTHE_2751, putative unc 20.0 3.7E+02 0.013 24.3 8.1 104 139-263 19-127 (134)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.95 E-value=1.4e-25 Score=266.44 Aligned_cols=367 Identities=16% Similarity=0.180 Sum_probs=307.6
Q ss_pred hhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 29 yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
....|.+.++.+++|+++.||..+++++..|++.- ....|+++++.|.+.+.++++++|++| ..|..++++.....
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 34567889999999999999999999999998754 235789999999999999999999999 88999998876432
Q ss_pred c----cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 108 D----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 108 ~----~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
+ ...++.++|.+.+.+.+.++.+|..++.+++.+....+..+..+++++++.|++.++|++++||+.++.+|+.+.
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 1 123788999999999999999999999999988887777888999999999999999999999999999999998
Q ss_pred HHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--cCcccccchHhHHHHHhhhhc-----------C--
Q 005727 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCIS-----------D-- 248 (680)
Q Consensus 184 ~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l--~~~~l~pfLp~LLp~LL~~Ls-----------d-- 248 (680)
+........+++.+++.++..+++.++.+|..|++++..+++. ....+.||+++++|.+++.|. |
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 7655433457889999999999999999999999977776642 223467899999999999993 3
Q ss_pred ---------CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH
Q 005727 249 ---------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (680)
Q Consensus 249 ---------s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~ 319 (680)
.+..+|..|..+.+.+....++ .-++.+++.+.+.+.+++|.+|.+|+.+++.+++++++.+.++++
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~ 399 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP 399 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 1124688888888877766542 125788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh----
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA---- 389 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~---- 389 (680)
.++|.+++.|+|+++.||..++|+++++++ ...|+.++++.|++.+.++..-....+...+.++|...+.
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence 999999999999999999999999999984 3578999999999999877666666677788888877655
Q ss_pred --hhHHHHHHHhhcc
Q 005727 390 --ERVYRELSTILEG 402 (680)
Q Consensus 390 --e~Iy~~La~iL~~ 402 (680)
+.|...+...+..
T Consensus 480 ~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 480 YLAYILDTLVFAFSK 494 (852)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 3455555555544
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.93 E-value=8.4e-23 Score=242.53 Aligned_cols=333 Identities=16% Similarity=0.223 Sum_probs=278.6
Q ss_pred hhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 29 yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
++..+++.++.+++|+++.||.+|+.++.++++...+....+++++++.|+++..|+++.||.+| ..|.++++.....-
T Consensus 171 ~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 171 PLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp CHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 37789999999999999999999999998876544445557788999999999999999999999 88888877443222
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhc-----------CC--------
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNML-----------SD-------- 166 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~--~~Li~~Lp~~L~~Lf~lL-----------sD-------- 166 (680)
. ..++.+++.+...+.+.++.+|..+++.+..+.+.+. ..+.++++.+++.+++.+ +|
T Consensus 251 ~-~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 251 L-PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp G-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred H-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 2 2367899999999999999999999999888876432 335678999999999888 45
Q ss_pred ---CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHh
Q 005727 167 ---SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 243 (680)
Q Consensus 167 ---~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL 243 (680)
.+-.||+++..+|+.+....+. .-++.+++.+...++++++.+|..|+.+++.+.+..+..+.+|++.++|.++
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3445899999999999887752 3467899999999999999999999999999988887788899999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHH
Q 005727 244 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 323 (680)
Q Consensus 244 ~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p 323 (680)
+.+.|+++.+|..|..+.+.+............++.+++.|.+.+.++++.+|.+|..++..+.+.++..+.||++.+++
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~ 486 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILD 486 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHH
Confidence 99999999999999999887766554322334578999999999999899999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHhh
Q 005727 324 TLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNF 365 (680)
Q Consensus 324 ~LL~~LsD~s~eV~~~al~lLa~Is~-------~~~~F~~fm~~LL~lf 365 (680)
.|++.+++........++++++.+++ +.+|++.+|+.+++.+
T Consensus 487 ~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 487 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 99999998877776666777776652 3469999999999644
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.90 E-value=1.9e-22 Score=226.50 Aligned_cols=377 Identities=14% Similarity=0.106 Sum_probs=288.2
Q ss_pred hhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 29 yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
..+.+++.+...+.|+++.||.+|++++..+++..+++ .+++++++.+.+++.|++..||.+| ..|..+.+....+
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-
Confidence 35667788888889999999999999999998766543 3467899999999999999999999 8888876643321
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~ 187 (680)
...+.++|.+...+.++++.+|..++..++.+....+.+ .+.+.+++.+.+++.|++++||..|..+++.+...+.
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 234668999999999999999999999999887644332 2567889999999999999999999999999987653
Q ss_pred cCCC--CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 005727 188 NSPS--VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (680)
Q Consensus 188 ~~~~--~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll 265 (680)
.... ...+.+++.+...++++++.+|..++.+++.+....|... +.+.++|.++..+.|.++++|..|.++.+.+.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 2110 2367899999999999999999999999998887655442 46889999999999999999999988887766
Q ss_pred HhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (680)
Q Consensus 266 ~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa 345 (680)
+.++. ....+.+++.+...+.+.+|.+|.+++.+++.+++..+.+. +.+.++|.+++.|.|++..||..++..++
T Consensus 392 ~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 392 EVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp HHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 65431 11136788889888999999999999999999998876653 34689999999999999999999999999
Q ss_pred HHhh---ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChh----hHHHHHHHhhcccCChhHHHHHHHHHHH
Q 005727 346 CIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE----RVYRELSTILEGEADLDFACTMVQALNL 418 (680)
Q Consensus 346 ~Is~---~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e----~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~ 418 (680)
.+.+ .+.+++.+++.+.+...+.+.......-..+..++..++.+ .++..+...+.+ .+...-...+.+|..
T Consensus 467 ~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~ 545 (588)
T 1b3u_A 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-PVANVRFNVAKSLQK 545 (588)
T ss_dssp HHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHH
Confidence 8873 23456788888887776555433333444666777666654 344444444322 222222244555555
Q ss_pred HH
Q 005727 419 IL 420 (680)
Q Consensus 419 iL 420 (680)
+.
T Consensus 546 l~ 547 (588)
T 1b3u_A 546 IG 547 (588)
T ss_dssp HG
T ss_pred HH
Confidence 44
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.89 E-value=1.2e-19 Score=213.44 Aligned_cols=392 Identities=11% Similarity=0.143 Sum_probs=295.7
Q ss_pred hhhhhhh-hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc-----------------cchhhhHHHHHHHHHHhhcC--
Q 005727 25 YSETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-----------------GDFIIFFNQIFDALCKLSAD-- 84 (680)
Q Consensus 25 ~~~~yL~-~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~-----------------~~il~~f~eIfd~L~kL~aD-- 84 (680)
.+.+|+. .+++.++.++.|.+.+||..|++.+..+++... .....++..+++.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457888 899999999999999999999999998876531 11235668899998877753
Q ss_pred -----CChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHH
Q 005727 85 -----SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFL 157 (680)
Q Consensus 85 -----~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L 157 (680)
.+.++|.+| ..|+.+..... ...++.++|.+.+.+.+.++.+|..++..++.+....+ ..+.++++.++
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345899888 78888776543 23467899999999999999999999999999987765 67789999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----ccc
Q 005727 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG----DQL 231 (680)
Q Consensus 158 ~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~--~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~----~~l 231 (680)
+.|++.+.|+++.||..++.+++.+...+... +...++.+++.++..+.++ +.+|..|+..+..+++..+ ..+
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhh
Confidence 99999999999999999999999999887643 2457899999999999876 8899999999999887654 678
Q ss_pred ccchHhHHHHHhhhhc--CCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC---------------CcHH
Q 005727 232 VPYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS---------------EWEA 294 (680)
Q Consensus 232 ~pfLp~LLp~LL~~Ls--ds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~---------------~~~~ 294 (680)
.||++.+++.+++.+. |.++++|..|.++.+.+....++. ....++.+++.+.+.+.+ ....
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 571 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence 8999999999999998 445889999999988777665421 001134555555554431 1345
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHhhccc
Q 005727 295 TRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~-eV~~~al~lLa~Is~-----~~~~F~~fm~~LL~lf~~d 368 (680)
+|..++..+..+.+..+..+.|+.+.++|.++..+++.+. .|+..++++++.++. -.+|+..+++.+++.+.++
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 7889999999999999999999999999999999998877 899999998888873 2367888999999888654
Q ss_pred chhHHhHHHHHHHHHHhhcCh------hhHHHHHHHhhccc-CChhHHHHHHHHHHHHHhc
Q 005727 369 NSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-ADLDFACTMVQALNLILLT 422 (680)
Q Consensus 369 ~~lLe~rg~~IIrqLc~~L~~------e~Iy~~La~iL~~~-~Dl~F~~~mVq~Ln~iLLT 422 (680)
..-....+--.+..++..++. +.+...+.+.+... .|.+.-......+..+...
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 332222233355566665553 23333333444332 1233333455555555443
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.89 E-value=3.6e-21 Score=209.59 Aligned_cols=330 Identities=12% Similarity=0.039 Sum_probs=264.1
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCC--ChhHHHHH-HHHHHHHHHHhhc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~--d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
...|...++..+.|+++.+ ..+++++..|++..... ..|+++++.|...+.|+ ++++|.+| ..|..++++...+
T Consensus 88 ~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (462)
T 1ibr_B 88 RREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch
Confidence 3456677889999999999 99999999988653221 36899999999999888 99999999 8888888876322
Q ss_pred cccccHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005727 107 SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~~~--np~vR~~avswI~~L~sip~~~Li~--~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~f 182 (680)
.-...++.++|.+...+.+. ++.+|..++..++.+...-+..+.. +.+.+++.|.+.+.|++++||..++.++..+
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 22334677899999999988 7999999999998865433322211 1233577788889999999999999999999
Q ss_pred HHHhhcCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---------------------CcccccchHhHHH
Q 005727 183 LQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADILG 240 (680)
Q Consensus 183 L~ei~~~~~~d~~-~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~---------------------~~~l~pfLp~LLp 240 (680)
..........+++ .+++.++..+.+.++.+|..|++.+..+++.. ...+.+|++.++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 8876654455778 99999999999999999999999777776542 1122357899999
Q ss_pred HHhhhhcCC-------chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-h
Q 005727 241 AILPCISDK-------EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-T 312 (680)
Q Consensus 241 ~LL~~Lsds-------~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p-~ 312 (680)
.+++.|.+. +..+|..|..+.+.+....++ .-++.+++.+.+.+.+++|..|.+|+..++.+++++. +
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 999998643 246899999998887776542 2257888999999999999999999999999999886 5
Q ss_pred hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHhhc
Q 005727 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFR 366 (680)
Q Consensus 313 ~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-------~~~~F~~fm~~LL~lf~ 366 (680)
.+.++++.++|.+++.|.|+++.||..++|+|+++++ ..+|++++++.|++.+.
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999993 24789999999987653
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.88 E-value=4e-20 Score=207.60 Aligned_cols=349 Identities=16% Similarity=0.149 Sum_probs=280.5
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
+.+.+.++|.+...++|+++.||..|++++..+++....+ ...+.+++.+.++..|++..||.+| ..|..+......
T Consensus 198 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~ 275 (588)
T 1b3u_A 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH
T ss_pred HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc
Confidence 3567788999999999999999999999999988765432 2346688888888999999999999 778887764422
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhh--hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML--GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li--~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
+ ...+.++|.+.+.+.+.++.+|..++..++.+....+.+.. .+++.+++.+.+++.|+++.||..++.+|+.+.
T Consensus 276 ~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 276 E---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp H---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred c---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2 12466899999999999999999999999988776554432 678999999999999999999999999999888
Q ss_pred HHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 184 ~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
..++.. ...+.+++.+...++++++.+|..++..++.+....+.. .+.+.++|.+...+.|.+..+|..+.++.+.
T Consensus 353 ~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 353 PILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 766431 124678899999999999999999999888887765533 2467889999999999999999999888887
Q ss_pred HHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005727 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (680)
Q Consensus 264 Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~l 343 (680)
+.+.++. ....+.+++.+...+.++++.+|.+|+..++.+....+.. .+.+.++|.|.+.+.|++..+|..++++
T Consensus 429 l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 429 LAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HHHHcCH---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 7766543 1223678999999999999999999999999999887665 2468899999999999999999999999
Q ss_pred HHHHhh---ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh
Q 005727 344 HACIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 344 La~Is~---~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
++.+++ .+.|...+++.+++.+.++...+.......+..++..++.
T Consensus 504 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 998883 3456778999999988877665544444556666666655
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.88 E-value=4.8e-20 Score=216.75 Aligned_cols=376 Identities=12% Similarity=0.100 Sum_probs=295.4
Q ss_pred hhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch--hhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHH
Q 005727 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV 100 (680)
Q Consensus 24 ~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i--l~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrll 100 (680)
..+.+|++.+++.++..+.|+++.||..|+.++.++++.....+ ..+++.+++.|.+.+.|+ +.||.+| .++..++
T Consensus 403 ~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999987765543 468899999999999887 8999888 8888888
Q ss_pred HHHhh---ccccccHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC---------
Q 005727 101 KDIVT---ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD--------- 166 (680)
Q Consensus 101 kdiv~---es~~f~L~~fIP~L~e~i~~--~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD--------- 166 (680)
+.... +.-...++.++|.|...+.+ .++.+|..+++.++.+....+.+..+|++.+++.+++.+.+
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 76541 11113467788888888874 44899999999999998887778888999988888877653
Q ss_pred ------CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchHhHH
Q 005727 167 ------SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADIL 239 (680)
Q Consensus 167 ------~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~-~irl~Al~WL~e~~~l~~~~l~pfLp~LL 239 (680)
...++|..+..+|+.+++.++.......+.+++.++..+++.+. .+|..++.+++.++...|..+.||+|+++
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 25678889999999999988765455788999999998888776 89999999999999999999999999999
Q ss_pred HHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhChhhHhhh
Q 005727 240 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHF 317 (680)
Q Consensus 240 p~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~--~~tR~aaL~WL~~L~~~~p~~~~~~ 317 (680)
|.++..+.+.++++|..|..+.+.+.+.+++ .-...++.+++.+.+.+.+++ ..+|.+++.+++.++..+++.+.+|
T Consensus 642 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 720 (861)
T 2bpt_A 642 PYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhch-hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999988999999999988877776642 111124678888888887654 7799999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHhhccc----chhHHh
Q 005727 318 LNDIFDTLLKALSDPS-----------DEVVLLVLEVHACIAKD--------LQHFRQLVVFLVHNFRVD----NSLLEK 374 (680)
Q Consensus 318 l~~l~p~LL~~LsD~s-----------~eV~~~al~lLa~Is~~--------~~~F~~fm~~LL~lf~~d----~~lLe~ 374 (680)
++.++|.+++.+.... ..|+..+++++..|... .+|...++..+.+...+. ...+..
T Consensus 721 l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~ 800 (861)
T 2bpt_A 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHH
Confidence 9999999999998432 35778888888888731 234445555555554431 334444
Q ss_pred HHHHHHHHHHhhc-Chh-------hHHHHHHHhhc
Q 005727 375 RGALIIRRLCVLL-DAE-------RVYRELSTILE 401 (680)
Q Consensus 375 rg~~IIrqLc~~L-~~e-------~Iy~~La~iL~ 401 (680)
.+.-.+..|+..+ |++ .+++.+-..+.
T Consensus 801 ~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 801 AAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 4556888888888 553 45555555554
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.88 E-value=4.1e-19 Score=218.77 Aligned_cols=392 Identities=13% Similarity=0.120 Sum_probs=295.5
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc------hhhhHHHHHHHHHHhhcC-CChhHHHHH-HHHHHH
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD------FIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRL 99 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~------il~~f~eIfd~L~kL~aD-~d~~Vr~gA-~~Ldrl 99 (680)
++++.|++.++.++.|+++.||..|+.++..++...... ...+|+++++.|.+.+.| ++..+|.+| ..|..+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 688999999999999999999999999999988765543 346899999999999985 888999999 778877
Q ss_pred HHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------------------------------
Q 005727 100 VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP---------------------------------- 145 (680)
Q Consensus 100 lkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip---------------------------------- 145 (680)
++.....-.. .++.+++.+...+.+.++.+|..++.+++.+....
T Consensus 162 ~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 162 LSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp HHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 7654332222 35667777777777777788877777776654332
Q ss_pred -----chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC------------
Q 005727 146 -----DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP------------ 208 (680)
Q Consensus 146 -----~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~------------ 208 (680)
+..+.+|++++++.+++.+.|.+++||..+..+++.+.+..+.....+++.+++.++..+...
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~ 320 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 234568889999999999999999999999999999988665443346788888888766420
Q ss_pred -------------------------CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 209 -------------------------DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 209 -------------------------d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
.+.+|..|+..++.++...|..+.+|+++++|.+...+.|.++++|..|.++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1246889999999999887878899999999999999999999999999988887
Q ss_pred HHHhccCCC-------------C-----CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHH
Q 005727 264 LRAIKADPA-------------D-----GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (680)
Q Consensus 264 Ll~~v~~~~-------------~-----~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~L 325 (680)
+.+..+... . ...++.+++.+.+.+.++++.+|.+++..++.+...+++.+.+|++.++|.+
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l 480 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHH
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH
Confidence 776553210 0 0124678888888899999999999999999999999999999999999999
Q ss_pred HHhcCCCCH--HHHHHHHHHHHHHhh--c----cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh--------
Q 005727 326 LKALSDPSD--EVVLLVLEVHACIAK--D----LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------- 389 (680)
Q Consensus 326 L~~LsD~s~--eV~~~al~lLa~Is~--~----~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~-------- 389 (680)
++.|.|+.+ +|+..++..++.+.+ + .+|+.++++.++..+.+........+-..+..++..++.
T Consensus 481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 560 (1230)
T 1u6g_C 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFD 560 (1230)
T ss_dssp HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 999999975 888888888877753 1 237888899998888665432211122256666655443
Q ss_pred -----hhHHHHHHHhhcc-cCChhHHHHHHHHHHHHH
Q 005727 390 -----ERVYRELSTILEG-EADLDFACTMVQALNLIL 420 (680)
Q Consensus 390 -----e~Iy~~La~iL~~-~~Dl~F~~~mVq~Ln~iL 420 (680)
+.++..+-..+.. +.|...-...+..+..+.
T Consensus 561 ~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 561 ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp CHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4677777666642 233333334444554444
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.88 E-value=1.8e-19 Score=212.28 Aligned_cols=350 Identities=11% Similarity=0.041 Sum_probs=274.1
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCC--ChhHHHHH-HHHHHHHHHHhhc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~--d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
...|.+.++.++.++++.+ ..++.++..|++.... ...|+++++.|...+.|+ ++++|.+| ..|..+++++..+
T Consensus 88 ~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (876)
T 1qgr_A 88 RREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (876)
T ss_dssp HHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh
Confidence 3445566899999999999 8999999888765321 257899999999999888 99999999 8888888764222
Q ss_pred cccccHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005727 107 SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~~~--np~vR~~avswI~~L~sip~~~Li~--~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~f 182 (680)
.-...++.++|.+...+.+. ++.+|..++..++.+...-+.++.. ..+.+++.++..+.|.+.+||..+..++..+
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l 244 (876)
T 1qgr_A 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 11234677899999999887 7899999999999876543322221 1134788888889999999999999999999
Q ss_pred HHHhhcCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---------------------CcccccchHhHHH
Q 005727 183 LQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADILG 240 (680)
Q Consensus 183 L~ei~~~~~~d~~-~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~---------------------~~~l~pfLp~LLp 240 (680)
+.........++. .+++.++....+.++.+|..|++.+..+++.. .....+++++++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 8765543334566 89999999999999999999998666665431 0112346789999
Q ss_pred HHhhhhcC-------CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-h
Q 005727 241 AILPCISD-------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-T 312 (680)
Q Consensus 241 ~LL~~Lsd-------s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p-~ 312 (680)
.+++.|.+ .+..+|..|..+.+.+....++ .-++.+++.+...+.+++|.+|.+|+..++.++++++ +
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 400 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence 99998863 3457999999888877766542 1267889999999999999999999999999999886 6
Q ss_pred hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHh
Q 005727 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (680)
Q Consensus 313 ~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-------~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~ 385 (680)
.+.++++.++|.+++.|+|+++.||..++|+++++++ ..+|+..+++.+++.+.++ .....+....+..++.
T Consensus 401 ~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999994 2579999999999999876 3334455556666665
Q ss_pred hc
Q 005727 386 LL 387 (680)
Q Consensus 386 ~L 387 (680)
..
T Consensus 480 ~~ 481 (876)
T 1qgr_A 480 AA 481 (876)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.86 E-value=2.2e-18 Score=202.94 Aligned_cols=390 Identities=14% Similarity=0.096 Sum_probs=291.9
Q ss_pred hhhhhh-hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc---------------------cchhhhHHHHHHHHHHhhc
Q 005727 26 SETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------------------GDFIIFFNQIFDALCKLSA 83 (680)
Q Consensus 26 ~~~yL~-~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~---------------------~~il~~f~eIfd~L~kL~a 83 (680)
..+|+. .+++.++.++.|++..||..|++.+.++++... +....+..++++.+.+.+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 467888 999999999999999999999999988876421 1112345788888887764
Q ss_pred -------CCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchH
Q 005727 84 -------DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLP 154 (680)
Q Consensus 84 -------D~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp 154 (680)
|.+.++|.+| ..|+.+.+... ..-++.++|.+.+.+.+.+|.+|..++.+++.+....+ ..+.+|++
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc----HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3457899988 77888776544 22377899999999999999999999999999987665 56778999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----
Q 005727 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---- 228 (680)
Q Consensus 155 ~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~--~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~---- 228 (680)
.+++.+++.+.|+++.||..|+.+++.+...+... ...+++.+++.++..+.++ +.+|..|+..+..++...+
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~ 486 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAAD 486 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999887643 2357899999999999885 8899999999999887643
Q ss_pred ----------cccccchHhHHHHHhhhhcCC---chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC------
Q 005727 229 ----------DQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS------ 289 (680)
Q Consensus 229 ----------~~l~pfLp~LLp~LL~~Lsds---~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~------ 289 (680)
..+.||++.++|.+++.+.+. +..+|..+.++.+.+.+.++.. ....++.+++.+.+.+.
T Consensus 487 ~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~ 565 (876)
T 1qgr_A 487 VADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVIMERLQQVLQME 565 (876)
T ss_dssp CTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999865 3578888888888777766431 11113455555554443
Q ss_pred -----CCc----HHHHHHHHHHHHHHHhhCh-hhHhhhhHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhh-----ccc
Q 005727 290 -----SEW----EATRIEALHWISTLLNRHR-TEVLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAK-----DLQ 352 (680)
Q Consensus 290 -----~~~----~~tR~aaL~WL~~L~~~~p-~~~~~~l~~l~p~LL~~LsD~s--~eV~~~al~lLa~Is~-----~~~ 352 (680)
++. ...|..++.++..+....+ +++.||++.++|.+++.+++++ ..|+..++.+++.++. -.+
T Consensus 566 ~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 566 SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp TSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 111 3468889999999999999 9999999999999999999886 4788899999988873 357
Q ss_pred hHHHHHHHHHHhhccc-chhHHhHHHHHHHHHHhhcCh------hhHHHHHHHhhccc-CChhHHHHHHHHHHHHHh
Q 005727 353 HFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-ADLDFACTMVQALNLILL 421 (680)
Q Consensus 353 ~F~~fm~~LL~lf~~d-~~lLe~rg~~IIrqLc~~L~~------e~Iy~~La~iL~~~-~Dl~F~~~mVq~Ln~iLL 421 (680)
|+..+++.+...+.+. ..-+...+-..+..++..++. +.+...+.+.+... .+.+.-......+..+..
T Consensus 646 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 8889999888888764 332222222244555544432 46666666666552 233444455666666553
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.86 E-value=4.6e-19 Score=218.26 Aligned_cols=396 Identities=14% Similarity=0.123 Sum_probs=307.9
Q ss_pred hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-CC------------------
Q 005727 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DS------------------ 85 (680)
Q Consensus 25 ~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~a-D~------------------ 85 (680)
...+|++.+++.++..+.|+++.||.+|.+++..+++.++.++.+|++++++.+.+.+. |+
T Consensus 248 ~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 45689999999999999999999999999999999998887778899999999987653 11
Q ss_pred ------------------ChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-
Q 005727 86 ------------------DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP- 145 (680)
Q Consensus 86 ------------------d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip- 145 (680)
...||.+| ..|+.++.. ..+.-...++.++|.+..++.+.++.+|..+++++..+....
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 406 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST-RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTT-CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhc
Confidence 13467777 667766541 111002236778999999999999999999999988765421
Q ss_pred ------------------chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC
Q 005727 146 ------------------DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (680)
Q Consensus 146 ------------------~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s 207 (680)
...+..++|.+++.+.+.+.|+++.+|.+++.+++.++...+.....+++.+++.++..+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 407 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND 486 (1230)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC
T ss_pred cccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC
Confidence 13456799999999999999999999999999999999876543345789999999999998
Q ss_pred CCH--HHHHHHHHHHHHHHH-hcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC----CCCC--ChH
Q 005727 208 PDE--FTRLTAITWINEFVK-LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP----ADGF--DVG 278 (680)
Q Consensus 208 ~d~--~irl~Al~WL~e~~~-l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~----~~~l--dl~ 278 (680)
+.+ .++..++.++..++. .+++.+.||++.++|.++.++.|.+..+|..|..+.+.+.+.++.. +..+ .++
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 566 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 566 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 764 899999999998876 4556699999999999999999999999988888888887776541 1111 247
Q ss_pred hHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------c
Q 005727 279 PILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------D 350 (680)
Q Consensus 279 ~iL~vL~~~L--~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~------~ 350 (680)
.+++.+...+ .+++..+|.+|+..++.++...++.+.++++.++|.|++.+.++. .|..++++++.|+. -
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~~~~~al~~i~~~~~~~~~ 644 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDL 644 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHhCccccch
Confidence 8889988888 677788999999999999999999999999999999999998765 66778889998883 2
Q ss_pred cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh----hhHHHHHHHhhcc--cCChhHHHHHHHHHHHHHhch
Q 005727 351 LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA----ERVYRELSTILEG--EADLDFACTMVQALNLILLTS 423 (680)
Q Consensus 351 ~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~----e~Iy~~La~iL~~--~~Dl~F~~~mVq~Ln~iLLTa 423 (680)
+.++..+++.|.+.+.++...+..-..-.+..++...+. +.+-..+..++.. ++|........+.|..+.-+.
T Consensus 645 ~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 467888999888888776543333333456666666543 4555555444333 567777777777777776433
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.78 E-value=2.6e-16 Score=171.14 Aligned_cols=341 Identities=12% Similarity=0.113 Sum_probs=258.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc-----------cch-hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccc
Q 005727 43 DQDSRVRYYACEALYNIAKVVR-----------GDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQF 110 (680)
Q Consensus 43 D~d~rVR~~A~eaL~nI~kv~~-----------~~i-l~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f 110 (680)
+.+..||..|+..+.|.++... ..+ ...-..|-+.|...+.++++.|+.++..+..+.+....+ .
T Consensus 48 ~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~---~ 124 (462)
T 1ibr_B 48 GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV---N 124 (462)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG---T
T ss_pred CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccc---c
Confidence 4589999999999999764210 000 012244666677777777777733337777776643221 1
Q ss_pred cHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHH
Q 005727 111 SIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQE 185 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~--np~vR~~avswI~~L~s-ip~~~Li~~Lp~~L~~Lf~lLsD~--~~dVR~~a~~~L~~fL~e 185 (680)
.-+.++|.|.+.+.+. ++.+|..++.+++.+.. ..+..+..+++.+++.+.+.+.|+ +++||.+|.+++..++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2467999999999998 99999999999998876 335557789999999999999998 799999999999886543
Q ss_pred hhcCCCCC-h-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH-hHHHHHhhhhcCCchhHHHHHHHHHH
Q 005727 186 IKNSPSVD-Y-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA-DILGAILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 186 i~~~~~~d-~-~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp-~LLp~LL~~Lsds~~eIR~~A~~~n~ 262 (680)
++...... + +.+++.+.....++++.+|..+++.+..+....+..+.+|++ .+++.++.++.+.++++|..|.+...
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 32111111 1 336788877888889999999999999999999988999999 99999999999999999998887665
Q ss_pred HHHHhc-------cC------C--CCCCC-----hHhHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhChhhHh
Q 005727 263 ELRAIK-------AD------P--ADGFD-----VGPILSIATRQLS-------SEWEATRIEALHWISTLLNRHRTEVL 315 (680)
Q Consensus 263 ~Ll~~v-------~~------~--~~~ld-----l~~iL~vL~~~L~-------~~~~~tR~aaL~WL~~L~~~~p~~~~ 315 (680)
.+.+.. .+ + ..... ++.+++.+.+.+. +++|..|.+|...++.++...++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--- 361 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--- 361 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---
Confidence 544321 10 0 01112 3678888877774 34577899999999999999985
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh
Q 005727 316 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 316 ~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~------~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
..++.++|.+...|.|++..+|..++.+++.++++ .++...+++.++..+.+....+...+...+.++|..++.
T Consensus 362 ~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 45568899999999999999999999999999953 246678999999999887777777777777777776654
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.72 E-value=2.9e-15 Score=171.57 Aligned_cols=315 Identities=15% Similarity=0.134 Sum_probs=231.8
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
....+.+++++.+++.|+++.||+.|+.+++++.+...+ .... +.+++.|.+++.|+|+.|+.+| .+|..+.+
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~---- 189 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISE---- 189 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHh----
Confidence 445667788899999999999999999999999874433 2221 3678899999999999999999 66666433
Q ss_pred ccc---ccc-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005727 106 ESD---QFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (680)
Q Consensus 106 es~---~f~-L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~ 181 (680)
+.+ .++ ....++.|...+.+.+|..+..++.++..+....+. ....+++.+..++.+.++.|+.+|+.++..
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 221 122 234567777778889999999999998877644432 346778888889999999999999888776
Q ss_pred HHHHhhcCCCC---ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHH
Q 005727 182 FLQEIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVAR 258 (680)
Q Consensus 182 fL~ei~~~~~~---d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~ 258 (680)
+...+...++. -.+.+.+.|+. +.++++.+|..|+.++..+....|..+.+++..+ + ++.+++..||..|.
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al 339 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKL 339 (591)
T ss_dssp SCCSCCBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHH
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHH
Confidence 64322111111 12456666664 4468999999999999999988887777776543 2 44444488998776
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHH
Q 005727 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (680)
Q Consensus 259 ~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~ 338 (680)
+... .++. .-+.+.+++.|.+.+.+.++..|..++.+++.++.+.|. ..+..++.|++.++|+.+.|+.
T Consensus 340 ~~L~---~l~~----~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~ 408 (591)
T 2vgl_B 340 DIMI---RLAS----QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQ 408 (591)
T ss_dssp HHHH---HTCC----SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHH---HHCC----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHHcccchHHHH
Confidence 5443 4443 235788999999999998999999999999999999874 3567788899999999999999
Q ss_pred HHHHHHHHHhh-ccchHHHHHHHHHHhhccc
Q 005727 339 LVLEVHACIAK-DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 339 ~al~lLa~Is~-~~~~F~~fm~~LL~lf~~d 368 (680)
.++..+..|.. +.......+..|.+.+.++
T Consensus 409 e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~ 439 (591)
T 2vgl_B 409 EAIVVIRDIFRKYPNKYESIIATLCENLDSL 439 (591)
T ss_dssp HHHHHHHHHHHHSCSSCCTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHCcchHHHHHHHHHHHHHhc
Confidence 88888888763 2222344566666666543
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.72 E-value=7.8e-16 Score=167.30 Aligned_cols=351 Identities=11% Similarity=0.043 Sum_probs=248.7
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhhHH--HHHHHHHHhhcCC-ChhHHHHH-HHHHHHHHHHhhccc
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFN--QIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~--eIfd~L~kL~aD~-d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
++.++..+.++|+.+|..|+.++..+...... .+...+. .+++.|.+++.++ ++.+|..| ..|..+...-.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78888999999999999999999887542222 2222222 5788888888877 88999888 777766541000000
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHh
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L-p~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei 186 (680)
..--...+|.|.+.+.+.++.+|..++..+..+....+..-...+ ...++.|.+++.+ ++.+||..|..+|..+...-
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 011134799999999999999999999999999876532111111 3567788888885 79999999999999887432
Q ss_pred -hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 187 -KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 187 -~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
......-+..+++.|+..+.++++.++..++..++.+....++.... .-.+++|.++..+.+.++++|..|..+.+.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11111124789999999999999999999988888776433221111 1235788888999999999999988887754
Q ss_pred HHhccCCCC-CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHH
Q 005727 265 RAIKADPAD-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLE 342 (680)
Q Consensus 265 l~~v~~~~~-~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~ 342 (680)
.....+... ..+ ..+++.|...+.++++.+|.+|+..|+.+..++++...... .+++|.|++.|.|++++|+..++|
T Consensus 262 ~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 321000000 001 25888999999999999999999999999998887766655 489999999999999999999999
Q ss_pred HHHHHhhc--cchHH-----HHHHHHHHhhcccchhHHhHHHHHHHHHHh
Q 005727 343 VHACIAKD--LQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (680)
Q Consensus 343 lLa~Is~~--~~~F~-----~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~ 385 (680)
+|+.++.+ ....+ .+++.|++++.+...-....+-..+.+++.
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999843 22222 377888888876654444444555666655
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.69 E-value=6.6e-16 Score=167.88 Aligned_cols=315 Identities=16% Similarity=0.065 Sum_probs=228.5
Q ss_pred hhHHHHhhccCCC-CHHHHHHHHHHHHHHHHhhccchhh-hHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 32 QIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 32 ~Iv~~VL~~l~D~-d~rVR~~A~eaL~nI~kv~~~~il~-~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.+++.++..+.++ ++.+|..|+.++.+++......... .-..+++.|.+++.++++.||..| ..|..+..+-.....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5889999999998 8999999999999987522111111 124578899999999999999988 777776542110000
Q ss_pred cccHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005727 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~-~np~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei 186 (680)
..--...+|.|...+.+ .++.+|..++..+..+.... +..-.......++.|.+++.+.+++||..++.+|..+....
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 00012468999999985 79999999999999998543 21112344788999999999999999999999988776311
Q ss_pred hcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch-HhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 187 KNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 187 ~~~~-~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL-p~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
.... .+--.++++.|+..+.++++.+|..|+..++.+..-.+......+ .+++|.+++.+.++++.+|..|..+.+.+
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0000 000135788899999999999999999999887654332111111 36889999999999999999988887654
Q ss_pred HHhccCCCCCCC--h-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhhhh-HHHHHHHHHhcCCCCHHHHHH
Q 005727 265 RAIKADPADGFD--V-GPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFL-NDIFDTLLKALSDPSDEVVLL 339 (680)
Q Consensus 265 l~~v~~~~~~ld--l-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~ 339 (680)
.. ....... . ..+++.|...+.+++..+|..|...++.+... .++.+.... .+++|.|+..|.+++++|+..
T Consensus 304 ~~---~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 380 (450)
T 2jdq_A 304 TA---GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380 (450)
T ss_dssp TT---SCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHH
T ss_pred Hc---CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 31 1000000 0 25777888888888889999999999999987 555554443 368999999999999999999
Q ss_pred HHHHHHHHhh
Q 005727 340 VLEVHACIAK 349 (680)
Q Consensus 340 al~lLa~Is~ 349 (680)
++++|..++.
T Consensus 381 a~~aL~~l~~ 390 (450)
T 2jdq_A 381 ALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998884
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.67 E-value=2.6e-15 Score=168.58 Aligned_cols=354 Identities=11% Similarity=0.059 Sum_probs=250.1
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhh-HHHHHHHHHHhhcCC-ChhHHHHH-HHHHHHHHHHhh
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIF-FNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~-f~eIfd~L~kL~aD~-d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
+...++.++..+.++|+.+|..|+.++.++...... .+... -..+++.|.+++.++ ++.||..| ..|..+..+-..
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 667789999999999999999999999887532211 11111 135788888999887 88999887 777766441100
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh-hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L-i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
.....--...+|.|.+.+.+.++.+|..++..+..+....+..- ...-...++.|.+++.|++++||..|+.+|..+..
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 00001113468999999999999999999999999987543211 11113578888899999999999999999988874
Q ss_pred Hh-hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch-HhHHHHHhhhhcCCchhHHHHHHHHHH
Q 005727 185 EI-KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 185 ei-~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL-p~LLp~LL~~Lsds~~eIR~~A~~~n~ 262 (680)
.- ..........+++.|+..+.++++.++..|+..++.+....+......+ .+++|.++..+.+.++++|..|..+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 22 1111112467899999999999999999999999888754433222222 378899999999999999999888776
Q ss_pred HHHHhccCCCCCCC--h-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHH
Q 005727 263 ELRAIKADPADGFD--V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVL 338 (680)
Q Consensus 263 ~Ll~~v~~~~~~ld--l-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~ 338 (680)
.+.. ....... + ..+++.|...+.++++.+|.+|+..|+.+..+.++.+.... .+++|.|++.|.+++++|+.
T Consensus 325 ~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 325 NIVT---GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHTT---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHc---CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 5421 1000000 0 25788899999999999999999999999998887666554 47899999999999999999
Q ss_pred HHHHHHHHHhhc-c---ch---HHH--HHHHHHHhhcccchhHHhHHHHHHHHHHhh
Q 005727 339 LVLEVHACIAKD-L---QH---FRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (680)
Q Consensus 339 ~al~lLa~Is~~-~---~~---F~~--fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~ 386 (680)
.++|+|+.++.+ . .+ +.. +++.|+.++.+...-....+-..+.+++..
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 999999999853 2 22 222 677788877665443333444455555543
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.66 E-value=1.6e-15 Score=170.28 Aligned_cols=315 Identities=16% Similarity=0.094 Sum_probs=227.0
Q ss_pred hhhHHHHhhccCCC-CHHHHHHHHHHHHHHHHhhccchhhh--HHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhc
Q 005727 31 QQIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFIIF--FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~-d~rVR~~A~eaL~nI~kv~~~~il~~--f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
..++|.++..+.++ ++.+|..|+.+|.+++..... .... -..+++.|.+++.++++.||..| .+|..+..+-...
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 35789999999998 899999999999998753211 1111 13567888888888999999998 7787775421100
Q ss_pred cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
....--...+|.|...+.+.++.+|..++..+..+.... +..-.......++.|.+++.+++++||..++.+|..+...
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 000111247999999999999999999999999998653 2222344577889999999999999999999999888631
Q ss_pred hhcCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch-HhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 186 IKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 186 i~~~~~~d~-~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL-p~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
-......-+ ..+++.|+..+.++++.++..|+..++.++.-.+......+ .+++|.++..|.++++++|..|..+.+.
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 100000001 26788999999999999999999988887643332211112 4788999999999999999999888775
Q ss_pred HHHhccCCCCCCC--h-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh--hHhhhh--HHHHHHHHHhcCCCCHHH
Q 005727 264 LRAIKADPADGFD--V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRT--EVLHFL--NDIFDTLLKALSDPSDEV 336 (680)
Q Consensus 264 Ll~~v~~~~~~ld--l-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~--~~~~~l--~~l~p~LL~~LsD~s~eV 336 (680)
+... ...... + ..+++.|...+.+++..+|..|+..|+.+...... +...++ .+.+|.|+..|.+++++|
T Consensus 368 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 368 ITAG---NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HTTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHcC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 4321 000000 0 24667777777778889999999999999887533 333332 358999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 005727 337 VLLVLEVHACIAK 349 (680)
Q Consensus 337 ~~~al~lLa~Is~ 349 (680)
+..++++|..+..
T Consensus 445 ~~~al~aL~~l~~ 457 (530)
T 1wa5_B 445 IEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=5.1e-15 Score=165.86 Aligned_cols=315 Identities=17% Similarity=0.108 Sum_probs=228.8
Q ss_pred hhHHHHhhccCCCC-HHHHHHHHHHHHHHHHhhccchhhhH-HHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 32 QIVPPVLNSFSDQD-SRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d-~rVR~~A~eaL~nI~kv~~~~il~~f-~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.++|.++..+.+++ +.+|..|+.+|.+++........... ...++.|.+++.++++.||..| .+|.++..+-.....
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 57899999999987 99999999999999753221111111 2478889999999999999998 788887643111000
Q ss_pred cccHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005727 109 QFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i-~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~ 187 (680)
...-...+|.|...+ .+.++.+|..++..+..+....+..-.......++.|.+++.+++++|+..|+.+|..+...-.
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 011123689999999 6789999999999999998764333344568889999999999999999999999887763110
Q ss_pred cCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCC-chhHHHHHHHHHHHH
Q 005727 188 NSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDK-EEKIRVVARETNEEL 264 (680)
Q Consensus 188 ~~~-~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pf-Lp~LLp~LL~~Lsds-~~eIR~~A~~~n~~L 264 (680)
... .+--.++++.|+..+.++++.++..|+..|+.++.-.+...... -.+++|.++..|.+. ++++|..|..+...+
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 000 00012578899999999999999999999988765332221111 156788999999988 899999988887755
Q ss_pred HHhccCCCCC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCCCCHHHHHH
Q 005727 265 RAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLL 339 (680)
Q Consensus 265 l~~v~~~~~~---ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD~s~eV~~~ 339 (680)
... .... +--..+++.|...+.+.+..+|..|+..|+.+......+...++ .+.++.|+..|.+++++|+..
T Consensus 357 ~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~ 433 (528)
T 4b8j_A 357 TAG---NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTV 433 (528)
T ss_dssp HTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HCC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 321 0000 00024677777778777889999999999999988433333333 468999999999999999999
Q ss_pred HHHHHHHHhh
Q 005727 340 VLEVHACIAK 349 (680)
Q Consensus 340 al~lLa~Is~ 349 (680)
++++|..+..
T Consensus 434 al~~L~~l~~ 443 (528)
T 4b8j_A 434 CLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=1.1e-14 Score=147.22 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=159.0
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-CCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~a-D~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
+..+.+.+...++|+++++|+.|.++|..+++.+.+.....+.++++.|.+++. |++.+||.+| .++..+++.+
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l---- 88 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL---- 88 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH----
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH----
Confidence 445556788899999999999999999998876433222345788888888885 8888888888 6666654421
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~ 187 (680)
+..+.+|.+.+++.|+..+.|+++.||.++..+|..+..
T Consensus 89 --------------------------------------~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~--- 127 (242)
T 2qk2_A 89 --------------------------------------AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA--- 127 (242)
T ss_dssp --------------------------------------GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT---
T ss_pred --------------------------------------hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---
Confidence 135678999999999999999999999999999998875
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-Cc-ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 005727 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (680)
Q Consensus 188 ~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~-~~-~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll 265 (680)
...++.+++.+...+++.++.+|..++.||+.++... +. .+.+|++.++|.+.+++.|+++++|..|.++.+.+.
T Consensus 128 ---~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 128 ---STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp ---TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2468899999999999999999999999999977664 33 468999999999999999999999999999999888
Q ss_pred Hhcc
Q 005727 266 AIKA 269 (680)
Q Consensus 266 ~~v~ 269 (680)
..++
T Consensus 205 ~~vg 208 (242)
T 2qk2_A 205 KLMG 208 (242)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 8775
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.63 E-value=5.4e-14 Score=161.02 Aligned_cols=347 Identities=16% Similarity=0.180 Sum_probs=243.3
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.....+.+++.+.++|..+|+.+..++.++++...+. ..-+...+.+-+.|+++.+|..| ..|.++ . .
T Consensus 47 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~---~ 115 (591)
T 2vgl_B 47 VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM----AIMAVNSFVKDCEDPNPLIRALAVRTMGCI----R---V 115 (591)
T ss_dssp CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTC----C---S
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----C---h
Confidence 4456677888999999999999988888776532211 12245667778899999999888 444332 1 1
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
.--.+.++|.+...+.+.+|.||+.|+.++..+....+..+ .. +.+++.|.+++.|+++.||..|..+|..+.. .
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~-~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~---~ 190 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV-ED-QGFLDSLRDLIADSNPMVVANAVAALSEISE---S 190 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH-HH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT---S
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc-cc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHh---h
Confidence 12246678889999999999999999999998877554322 21 4688999999999999999999888877643 2
Q ss_pred CCC---CC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 189 SPS---VD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 189 ~~~---~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
.+. .+ ....++.|+..+.+.++..+...+.+++.+. +.+ -+...++++.+++++.+.++.|+..|.++...+
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 221 22 2456777777777788888888888876443 221 123568899999999999999998888776543
Q ss_pred HHhccCCCCCCC--hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 005727 265 RAIKADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (680)
Q Consensus 265 l~~v~~~~~~ld--l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~ 342 (680)
...+....+.+. .+.+.+.|... .+++..+|..|+.+++.+....|+.+.++...++ ..++|+ ..|+..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~----~~~~d~-~~Ir~~al~ 340 (591)
T 2vgl_B 267 LELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF----VKYNDP-IYVKLEKLD 340 (591)
T ss_dssp CCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS----CCTTSC-HHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe----eccCCh-HHHHHHHHH
Confidence 222211111111 23444555543 4567789999999999999999998888776542 223455 999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh--hhHHHHHHHhhccc
Q 005727 343 VHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGE 403 (680)
Q Consensus 343 lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~--e~Iy~~La~iL~~~ 403 (680)
+|..+++ +...+.++..|+..+.+...-........|.++|...+. +.+...+.+.+...
T Consensus 341 ~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 341 IMIRLAS-QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK 402 (591)
T ss_dssp HHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHccc
Confidence 9999984 456788999999888765443333444467777776643 55666666666443
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.63 E-value=8.5e-15 Score=164.04 Aligned_cols=319 Identities=12% Similarity=0.068 Sum_probs=227.7
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc-cchh-hhHHHHHHHHHHhhcCCC-hhHHHHH-HHHHHHHHHHhhc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFI-IFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~-~~il-~~f~eIfd~L~kL~aD~d-~~Vr~gA-~~Ldrllkdiv~e 106 (680)
..-+|.++..+.++|+.+|..|+.++.++..... .... ..-..+++.|.+++.+++ +.+|..| .+|.++..+-...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3457889999999999999999999988865333 1111 112357888888888887 8999888 7777765421110
Q ss_pred cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhc-CCCChhHHHHHHHHHHHHHH
Q 005727 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNML-SDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L-p~~L~~Lf~lL-sD~~~dVR~~a~~~L~~fL~ 184 (680)
....--...+|.|...+.+.++.+|..++..++.+....+..-...+ ...++.|++++ .+++++++..++.+|..+..
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 00111123799999999999999999999999999765432111111 14677888899 67899999999999988875
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 185 ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pf-Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
.-.........+.++.|+..+.++++.++..|+..++.+..-.+...... -.+++|.++..|.+++++++..|..+.+.
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 32111111246789999999999999999999998887764333221111 23688999999999999999988887765
Q ss_pred HHHhccCCC-CCCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHH
Q 005727 264 LRAIKADPA-DGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLV 340 (680)
Q Consensus 264 Ll~~v~~~~-~~ldl~~iL~vL~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~a 340 (680)
+........ ..++ ..+++.|...+.++ +..+|..|...|+.+..+.++.+.... .+++|.|+..|.+.+++|+..+
T Consensus 313 l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 313 IVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 422100000 0001 34678888888887 889999999999999988776654443 3789999999999999999999
Q ss_pred HHHHHHHhhc
Q 005727 341 LEVHACIAKD 350 (680)
Q Consensus 341 l~lLa~Is~~ 350 (680)
+|+|+.++.+
T Consensus 392 ~~aL~nl~~~ 401 (528)
T 4b8j_A 392 AWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999999853
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=1.1e-14 Score=147.21 Aligned_cols=208 Identities=16% Similarity=0.206 Sum_probs=173.9
Q ss_pred cCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 005727 143 SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWIN 221 (680)
Q Consensus 143 sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~-s~d~~irl~Al~WL~ 221 (680)
-.++.++...+| +.++..+.|.+-.+|+++...|..+++........++.++++.+...+. +++..++..|+.-++
T Consensus 6 ~~~~~di~~~l~---~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 6 LLDPVDILSKMP---KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp TTSCBCCGGGSC---TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hCCcccccccCC---HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 345556655555 4566788999999999999999999886433223467899999999995 999999999999999
Q ss_pred HHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005727 222 EFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALH 301 (680)
Q Consensus 222 e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~ 301 (680)
.++...+..+.+|.+.++|.++..+.|..+.+|..|..+...+... ..++.+++.+...+.+.++.+|..++.
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~ 155 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETAL 155 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 9998888899999999999999999999999999999988866543 247899999999999999999999999
Q ss_pred HHHHHHhhC-hh-hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHH
Q 005727 302 WISTLLNRH-RT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVF 360 (680)
Q Consensus 302 WL~~L~~~~-p~-~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~~~~F~~fm~~ 360 (680)
|++.+.... |+ ...++++.++|.|+++|.|+.++||..+..+++.+.. ++..|.+++..
T Consensus 156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 999988886 55 3578999999999999999999999999999998884 33334444433
No 23
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.59 E-value=1.2e-13 Score=142.02 Aligned_cols=255 Identities=14% Similarity=0.087 Sum_probs=197.2
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
..-++.++..+.|+|+.||..|+.+|.++.. ++.++.|.+++.|+++.||..| ..|.++ ... .
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~~--~ 85 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI----KIC--K 85 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS----CCC--T
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHh----ccc--c
Confidence 3457889999999999999999999987631 4678888999999999999988 665543 111 1
Q ss_pred ccHhhhHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 110 FSIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 110 f~L~~fIP~L~e-~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
...+.++|.|.. ...+.++.+|..++..++.+....+ .+-+.+++.|.+.+.|+++.||..|..+|+.+..
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 234556777763 5678999999999999998764322 2456788999999999999999999888876532
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhc
Q 005727 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v 268 (680)
+..++.|+..+.++++.+|..|+..++.+ + +.-+..++.+...+.|+++++|..|..+.+.+
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~-----~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~---- 219 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININ---K-----YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR---- 219 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHH---T-----CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh---c-----cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----
Confidence 34688888889999999999999988765 2 12368889999999999999999998887642
Q ss_pred cCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 005727 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHAC 346 (680)
Q Consensus 269 ~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~-s~eV~~~al~lLa~ 346 (680)
+ -+..++.|...+.++. +|..+...++.+.. +..+|.|.+.+.|. +++++..+.+.+.+
T Consensus 220 ~-------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 220 K-------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp T-------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred C-------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 1 1467788888887755 78899888888754 35688888888764 67888888877754
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.59 E-value=3.8e-13 Score=154.92 Aligned_cols=330 Identities=16% Similarity=0.145 Sum_probs=228.5
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
....+.+++++.+++.|+++.||++|+.+++++.+...+.+ ..+++.+.+++.|+|+.|+.+| .+|..+.+
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~---- 208 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCE---- 208 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH----
Confidence 45667789999999999999999999999999987554332 2456777888999999999988 66655432
Q ss_pred cccc--ccHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc---C
Q 005727 106 ESDQ--FSIEEFIPLLRERMN---------------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML---S 165 (680)
Q Consensus 106 es~~--f~L~~fIP~L~e~i~---------------~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lL---s 165 (680)
.... .....++|.+...+. ..+|..+..++.+++.+....+ +...-+.+++..+.+-. .
T Consensus 209 ~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 209 RSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-DSSEAMNDILAQVATNTETSK 287 (618)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHHHTSCCSS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhcccccc
Confidence 2111 123456777766554 3589999999999998876533 22233333444443321 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005727 166 DSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (680)
Q Consensus 166 D~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~ 244 (680)
..+..|.-+|.+++.. +.. ..+ ....++.|...+.++++.+|..|+.+++.+....|..+.+| .+.++.
T Consensus 288 ~~~~aV~~ea~~~i~~----l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~ 357 (618)
T 1w63_A 288 NVGNAILYETVLTIMD----IKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVD 357 (618)
T ss_dssp THHHHHHHHHHHHHHH----SCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHH
T ss_pred chHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHH
Confidence 2345677776666543 211 111 23467888888899999999999999999998877665554 456788
Q ss_pred hhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHH
Q 005727 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 324 (680)
Q Consensus 245 ~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~ 324 (680)
|+.|++.+||..|.++.. +++. .-+++.+++.+...+.+.+.+.|..++.+++.++.+++.... ..++.
T Consensus 358 ~l~d~d~~Ir~~alelL~---~l~~----~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~----~~v~~ 426 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSF---ALVN----GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR----WHIDT 426 (618)
T ss_dssp GGGSSCHHHHHHHHHHHH---HHCC----SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH----HHHHH
T ss_pred HccCCChhHHHHHHHHHH---HHcc----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH----HHHHH
Confidence 899999999988877655 4443 234688999999999888899999999999999999875544 45666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhhccc---chhHHhHHHHHHHHHHhhc
Q 005727 325 LLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVD---NSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 325 LL~~LsD~s~eV~~~al~lLa~Is~-~~~~F~~fm~~LL~lf~~d---~~lLe~rg~~IIrqLc~~L 387 (680)
+++.|++..+.|+..++..+.++.. +.+.-...+..|.+.+.++ ..+.. .+..|+-..|..+
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i 492 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLL 492 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhHHHh
Confidence 7777777766666666666666664 3333345677777777653 33332 3455666666543
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-13 Score=141.95 Aligned_cols=216 Identities=13% Similarity=0.200 Sum_probs=181.9
Q ss_pred cCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHHhhcCC--CCChHHHHHHHHHhc-CCCCHHHHHHHHH
Q 005727 143 SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE-FLQEIKNSP--SVDYGRMAEILVQRA-ASPDEFTRLTAIT 218 (680)
Q Consensus 143 sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~-fL~ei~~~~--~~d~~~II~iLl~~~-~s~d~~irl~Al~ 218 (680)
-+++.+++.-+|. +....+.+++..-|++|-..|.. ++...++.. ..++.+++..|...+ .+++..++..|+.
T Consensus 7 ~~~~~~i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~ 83 (249)
T 2qk1_A 7 MLPEETILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQ 83 (249)
T ss_dssp CCCCBCCGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcChhhhhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3456666666665 55667789999999998888777 765443333 457889999999999 7999999999999
Q ss_pred HHHHHHHhcC-cccc-cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005727 219 WINEFVKLGG-DQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (680)
Q Consensus 219 WL~e~~~l~~-~~l~-pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR 296 (680)
.++.+++-.+ ..+. +|...++|.++..+.|..+.+|+.|..+...+...+........++.+++.|...+.+.+|.+|
T Consensus 84 al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk 163 (249)
T 2qk1_A 84 SVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIR 163 (249)
T ss_dssp HHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHH
Confidence 9999988766 7898 9999999999999999999999999999888888764322112378999999999999999999
Q ss_pred HHHHHHHHHHHhhCh---hhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHH
Q 005727 297 IEALHWISTLLNRHR---TEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFL 361 (680)
Q Consensus 297 ~aaL~WL~~L~~~~p---~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~~~~F~~fm~~L 361 (680)
++++.|+..+.+..+ ..+.+++ +.++|.|.+.+.|++++||..+.++++.+.. ++..|.+++..|
T Consensus 164 ~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999988 6788999 9999999999999999999999999998873 566788888876
No 26
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.55 E-value=1.2e-12 Score=157.81 Aligned_cols=349 Identities=11% Similarity=0.101 Sum_probs=231.2
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh--c
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT--E 106 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~--e 106 (680)
...|...++.++.++++.||..+|+++..|++.- ....||++++.|..++.+++++.+.|| ..|..++|+.-. .
T Consensus 83 k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d---~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 83 VELIKKEIVPLMISLPNNLQVQIGEAISSIADSD---FPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---STTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh---CccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456677888888888999999999998887542 224689999999999988888899999 777877775421 1
Q ss_pred cc------cccHhhhHHHHHHH-------hcCCCH---HHH------HHHHHHHHHhh--cCCchhhhhchHHHHHHHHH
Q 005727 107 SD------QFSIEEFIPLLRER-------MNVLNP---YVR------QFLVGWITVLD--SVPDIDMLGFLPDFLDGLFN 162 (680)
Q Consensus 107 s~------~f~L~~fIP~L~e~-------i~~~np---~vR------~~avswI~~L~--sip~~~Li~~Lp~~L~~Lf~ 162 (680)
++ ...+..+.|.+.+. +.+..+ .+| ..++..++.+. ..| ..+..+++.+++.+.+
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIP-EFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCC-HHHHHTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHH
Confidence 10 11244555554443 333221 233 33555555543 233 3345667777777676
Q ss_pred hcCCC--------C-------hhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Q 005727 163 MLSDS--------S-------HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-----SPDEFTRLTAITWINE 222 (680)
Q Consensus 163 lLsD~--------~-------~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~-----s~d~~irl~Al~WL~e 222 (680)
++... + ..||+.+++++..+.....+....+++.+++.++..+. ..++.++..+++.+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 66321 1 24788888998888764433222345666776665543 3457788889987777
Q ss_pred HHHhcC--cccc--cchHhHH-HHHhhhhcCCch-----------------------hHHHHHHHHHHHHHHhccCCCCC
Q 005727 223 FVKLGG--DQLV--PYYADIL-GAILPCISDKEE-----------------------KIRVVARETNEELRAIKADPADG 274 (680)
Q Consensus 223 ~~~l~~--~~l~--pfLp~LL-p~LL~~Lsds~~-----------------------eIR~~A~~~n~~Ll~~v~~~~~~ 274 (680)
+++... ..+. ||+++++ +.+++.|.+++. ..|..|..+...+....++
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---- 394 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---- 394 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH----
T ss_pred HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch----
Confidence 765433 2344 8999999 899999864311 2455555555444433221
Q ss_pred CChHhHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhh---ChhhHhh-----hhHHH-HHHHHHhcCCC---CHHH
Q 005727 275 FDVGPILSIATRQLS------SEWEATRIEALHWISTLLNR---HRTEVLH-----FLNDI-FDTLLKALSDP---SDEV 336 (680)
Q Consensus 275 ldl~~iL~vL~~~L~------~~~~~tR~aaL~WL~~L~~~---~p~~~~~-----~l~~l-~p~LL~~LsD~---s~eV 336 (680)
.-++.+++.+.+.+. +++|..|++|+..++.++++ +..++.+ .+..+ ...+++.|.|+ .+.|
T Consensus 395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 113456666666665 67899999999999999875 2222221 23332 23466677787 8999
Q ss_pred HHHHHHHHHHHhh--ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhh
Q 005727 337 VLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (680)
Q Consensus 337 ~~~al~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~ 386 (680)
|..+||+++++++ ..+++.++++.+++.+.++...+...+...+.++|..
T Consensus 475 r~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 9999999999996 3578999999999999887777778888999999874
No 27
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.51 E-value=2.7e-12 Score=148.09 Aligned_cols=317 Identities=14% Similarity=0.107 Sum_probs=217.8
Q ss_pred hhhhhhhhHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHH
Q 005727 26 SETILQQIVPPVLNSF--SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD 102 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l--~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkd 102 (680)
...+.+.+.++|.+++ .|+++.||+.|+.+++.+.+...+. .+. ++.++.|.++++|+|+.|+.+| .++..+++
T Consensus 140 ~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~-~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~- 216 (621)
T 2vgl_A 140 SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL-VPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQ- 216 (621)
T ss_dssp CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG-CCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh-cCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHH-
Confidence 3678888999999999 9999999999999999998855433 321 2456777778899999999999 54444433
Q ss_pred HhhccccccHhhhHHHHHHHhc----C-------------CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC
Q 005727 103 IVTESDQFSIEEFIPLLRERMN----V-------------LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS 165 (680)
Q Consensus 103 iv~es~~f~L~~fIP~L~e~i~----~-------------~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs 165 (680)
+... ....++|.+...+. . ++|..+..++.++..+....+.+....+.++++.+++.+.
T Consensus 217 ---~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~ 292 (621)
T 2vgl_A 217 ---KNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQ 292 (621)
T ss_dssp ---HCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---hChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 2211 12234554444332 1 2799999999999988765555677788888888887766
Q ss_pred CCC-----------hhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005727 166 DSS-----------HEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (680)
Q Consensus 166 D~~-----------~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p 233 (680)
|+. ..|.-+|.+++-.+ . +..+ ....++.|...+.++++++|..|+.|+..++...|. .+
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l----~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~ 364 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHH----D--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HE 364 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHH----C--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhc----C--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HH
Confidence 533 14444444443322 1 1222 456788888888889999999999999999876542 23
Q ss_pred chHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 005727 234 YYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (680)
Q Consensus 234 fLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~ 312 (680)
++.+..+.++.|+. |++..||..|.+.. ..++.+ -+++.+++.|..++.+.+.+.|..++.|++.++.+++.
T Consensus 365 ~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL---~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 365 AVKTHIETVINALKTERDVSVRQRAVDLL---YAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHH---HHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHH---HHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 45667788889999 99999998776654 355432 34788999999999888888999999999999988765
Q ss_pred hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhhccc
Q 005727 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 313 ~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-~~~~F~~fm~~LL~lf~~d 368 (680)
... ..+..|++.+++..+.|...++..+..+.. ++..-+..+..+.+.+.++
T Consensus 438 ~~~----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~ 490 (621)
T 2vgl_A 438 DYT----WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAP 490 (621)
T ss_dssp STH----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSS
T ss_pred cHH----HHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCc
Confidence 544 445555555555444444444444444442 3333334556666666554
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.49 E-value=5.3e-11 Score=137.17 Aligned_cols=350 Identities=13% Similarity=0.047 Sum_probs=235.6
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHHHHhhcC-CChhHHHHH-HHHHHHHHHHhhc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i-l~~f~eIfd~L~kL~aD-~d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
-...+++++..+.|+|+.||..|+.+|.++++...... ...-+.+++.|.+.+.+ .++.++..| ..|..+.++-- .
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-G 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-H
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-h
Confidence 34467888899999999999999999999976432111 11124677888877754 478888777 66665543210 0
Q ss_pred cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L-p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
.....-...+|.|.+.+.+.++.+|..++..+..+....+..-.... ...++.|.+++.+++++++..+..+|..+...
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 00011123699999999999999999999999999876432222222 56788899999999999999888888877631
Q ss_pred hhcC-CCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 186 IKNS-PSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 186 i~~~-~~~d~~~II~iLl~~~~s~d-~~irl~Al~WL~e~~~l~~~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
-... ..+--...++.|+..+++.+ +.++..++..+..+.. .+ .....+ ...+|.+++.+.+.+++++..|..+.
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L 248 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CT-THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-Cc-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1000 00001245677777777665 5566667777666543 22 112221 24788999999988899998887777
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hHHHHHHHHHhcCCCC--HHHHH
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPS--DEVVL 338 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~-l~~l~p~LL~~LsD~s--~eV~~ 338 (680)
..+.+.. ........+++.|.+.+.++++.+|..|...|..+....++..... -.+.+|.|+..|.+.+ ++|+.
T Consensus 249 ~nL~~~~---~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~ 325 (644)
T 2z6h_A 249 RNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325 (644)
T ss_dssp HHHGGGC---TTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhcc---hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence 6553322 2222346899999999999999999999999999988765432222 2357888888887643 79999
Q ss_pred HHHHHHHHHhhccc---h----H--HHHHHHHHHhhcccc-hhHHhHHHHHHHHHHh
Q 005727 339 LVLEVHACIAKDLQ---H----F--RQLVVFLVHNFRVDN-SLLEKRGALIIRRLCV 385 (680)
Q Consensus 339 ~al~lLa~Is~~~~---~----F--~~fm~~LL~lf~~d~-~lLe~rg~~IIrqLc~ 385 (680)
.++++|+.++.+.. + + ...++.|++++.++. .-+...+...+++|+.
T Consensus 326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 99999999984321 1 1 136778888887653 2333345567777765
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-12 Score=134.41 Aligned_cols=198 Identities=11% Similarity=0.135 Sum_probs=157.3
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHH-HHHhhccch--hhhHHHHHHHHHHhh-cCCChhHHHHH-HHHHHHHHHHhh
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYN-IAKVVRGDF--IIFFNQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~n-I~kv~~~~i--l~~f~eIfd~L~kL~-aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
..+-+.....+++++++-|..|.++|.. +...+..-. ...+.++++.|.+.+ .|++..|+.+| .++..++++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~--- 91 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK--- 91 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH---
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh---
Confidence 3444455667799999999999999988 764433222 223457788887777 67777777666 444444321
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhh-hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li-~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
-. ..+. +|...+++.++..+.|..+.||+++..+|+.+.
T Consensus 92 ---------------------------------------l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~ 132 (249)
T 2qk1_A 92 ---------------------------------------LKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC 132 (249)
T ss_dssp ---------------------------------------HCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12 2356 788899999999999999999999999999999
Q ss_pred HHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---cccccch-HhHHHHHhhhhcCCchhHHHHHH
Q 005727 184 QEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYY-ADILGAILPCISDKEEKIRVVAR 258 (680)
Q Consensus 184 ~ei~~~~-~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~---~~l~pfL-p~LLp~LL~~Lsds~~eIR~~A~ 258 (680)
..+.... ..+++.+++.|...++++++.+|..++.||..++...+ ..+.+|+ |.++|.+.++|.|+++++|..|.
T Consensus 133 ~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 133 KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp HHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8763211 12388999999999999999999999999999998877 4688999 99999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 005727 259 ETNEELRAIKAD 270 (680)
Q Consensus 259 ~~n~~Ll~~v~~ 270 (680)
++.+.+++.+++
T Consensus 213 ~~l~~i~~~vG~ 224 (249)
T 2qk1_A 213 ESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhCH
Confidence 999999999875
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.48 E-value=9.4e-11 Score=130.04 Aligned_cols=349 Identities=13% Similarity=0.048 Sum_probs=229.6
Q ss_pred hhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc-hhhhHHHHHHHHHHhhc-CCChhHHHHH-HHHHHHHHHHhh
Q 005727 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 29 yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~-il~~f~eIfd~L~kL~a-D~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
+-...++++...+.++|+.+|..|+.+|.+++...... ....-+..++.|.+++. ++++.++..| ..|.++.++--
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~- 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE- 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-
Confidence 44557899999999999999999999999987532210 01111356777777764 4577787777 77776543200
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~-~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
......-...+|.|.+.+.+.++.+|..++..+..+....+..-.. .=...++.|.+++.+++.++|..+..+|..+..
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0000111236999999999999999999999999997654322111 125678888999999999999998888876652
Q ss_pred H---hhcCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCchhHHHHHH
Q 005727 185 E---IKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVAR 258 (680)
Q Consensus 185 e---i~~~~~~d~~~II~iLl~~~~s~d~-~irl~Al~WL~e~~~l~~~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~ 258 (680)
. .+. .+--.+.++.++..+++.++ ..+..+...+..+.. .+. ....+ .+.+|.+++.+.+.+++++..|.
T Consensus 173 ~~~~~~~--~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 173 GNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp TCHHHHH--HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred CCHHHHH--HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-Ccc-cHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 1 000 00001345566665555544 445556666665543 221 12221 36788999999998999988887
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCC--CCHH
Q 005727 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSD--PSDE 335 (680)
Q Consensus 259 ~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD--~s~e 335 (680)
.+...+... .........+++.|.+.+.+++..+|..|...|..+....++...... .+.+|.|++.|.+ ++++
T Consensus 249 ~~L~~l~~~---~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTT---CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcC---ChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 776654432 222223568899999999999999999999999999887654333222 2467888888865 3478
Q ss_pred HHHHHHHHHHHHhhccc-------hHH--HHHHHHHHhhcccch-hHHhHHHHHHHHHHh
Q 005727 336 VVLLVLEVHACIAKDLQ-------HFR--QLVVFLVHNFRVDNS-LLEKRGALIIRRLCV 385 (680)
Q Consensus 336 V~~~al~lLa~Is~~~~-------~F~--~fm~~LL~lf~~d~~-lLe~rg~~IIrqLc~ 385 (680)
|+..++++|+.++.+.+ .+. ..++.|++++.++.. ....-+...+++++.
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 99999999999985321 111 256778888876542 333344567788775
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.47 E-value=4.1e-12 Score=146.59 Aligned_cols=353 Identities=11% Similarity=0.052 Sum_probs=231.1
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccc
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
.....|++++.++|...|+.+..++.+.++...+ ..--+...+.|-+.|+++.+|..| ..|.++... -
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e----~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-------e 142 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSE----LIRLINNAIKNDLASRNPTFMGLALHCIANVGSR-------E 142 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-------H
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcH----HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCH-------H
Confidence 4557788999999999999887777665432221 123355667777889999999888 666554211 1
Q ss_pred cHhhhHHHHHHHh--cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 111 SIEEFIPLLRERM--NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 111 ~L~~fIP~L~e~i--~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
-.+.++|.+..++ .+.+|+||+.|+-++..+....+. +++. +.+++.|.++++|+++.|+.+|..++.++...-+.
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 2466899999999 999999999999999988876553 3333 57888899999999999999988887777653221
Q ss_pred CCCCChHHHHHHHHHhcC---C----------CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCch--hH
Q 005727 189 SPSVDYGRMAEILVQRAA---S----------PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE--KI 253 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~---s----------~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~--eI 253 (680)
.....++.++++|-..+. . ++|..|...+.|+..+...........+.++++.++..+.+... .+
T Consensus 221 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 221 EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKV 300 (621)
T ss_dssp HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 111123444444433221 1 16888988999888654333334555566677777765543210 01
Q ss_pred --HHH----HHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHH
Q 005727 254 --RVV----ARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK 327 (680)
Q Consensus 254 --R~~----A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~ 327 (680)
+.. ..++-..++.+- +..--....++.|...+.+.+..+|..|+.|+..+....|. .+.+....+.++.
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~ 375 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVIN 375 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHH
Confidence 111 112222222321 11101345677888888878889999999999999988762 1223444567788
Q ss_pred hcC-CCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh--hhHHHHHHHhhccc
Q 005727 328 ALS-DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGE 403 (680)
Q Consensus 328 ~Ls-D~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~--e~Iy~~La~iL~~~ 403 (680)
+|+ |++..|+..++++|..+++ +...+.++..|++.+.+...-.....-.-|..+|....+ +.....+.+.+...
T Consensus 376 ~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 376 ALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA 453 (621)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred HhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 888 9999999999999999994 567899999999988765443332223345556655433 44555555555443
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.47 E-value=5.6e-11 Score=140.48 Aligned_cols=347 Identities=13% Similarity=0.045 Sum_probs=232.9
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc-hhhhHHHHHHHHHHhhc-CCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~-il~~f~eIfd~L~kL~a-D~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
...+|+++..+.++|+.||..|+.+|.++++..... ....-+.+++.|.+++. +.++.+|..| ..|..+.++--. .
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-L 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-H
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-H
Confidence 567888999999999999999999999987532211 11112467888887765 4588888777 677665432100 0
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQ-- 184 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L-p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~-- 184 (680)
....-...||.|.+.+.+.++.+|..++..+..+....+..-.... ...++.|.+++.+++.+|+..+..+|..+..
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 0011123699999999999999999999999999876443222222 4678888999999999999998888875542
Q ss_pred -HhhcCCCCChHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCchhHHHHHHHH
Q 005727 185 -EIKNSPSVDYGRMAEILVQRAASPDEF-TRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARET 260 (680)
Q Consensus 185 -ei~~~~~~d~~~II~iLl~~~~s~d~~-irl~Al~WL~e~~~l~~~~l~pf--Lp~LLp~LL~~Lsds~~eIR~~A~~~ 260 (680)
+.+.. -.+ ...++.|+..+++.+++ .+..++..+..+.. .+.. .+. -...+|.++..+.+.+++++..|..+
T Consensus 308 ~e~~~~-i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 308 QESKLI-ILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp HHHHHH-HHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTH-HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred hHHHHH-HHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHH-HHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 11000 001 23566777777766644 44445555555543 2211 111 13567899999999888888777666
Q ss_pred HHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hHHHHHHHHHhcCCCC--HHHH
Q 005727 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPS--DEVV 337 (680)
Q Consensus 261 n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~-l~~l~p~LL~~LsD~s--~eV~ 337 (680)
...+.... ........+++.|.+.+.++++.+|..|...|+.|....++..... -.+.+|.|++.|.+++ ++|+
T Consensus 384 L~~L~~~~---~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~ 460 (780)
T 2z6g_A 384 LRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460 (780)
T ss_dssp HHHHHTTC---TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccc---hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHH
Confidence 65443322 2222357899999999999999999999999999988765433222 2357888888887643 4899
Q ss_pred HHHHHHHHHHhhccch-------H--HHHHHHHHHhhcccch-hHHhHHHHHHHHHHh
Q 005727 338 LLVLEVHACIAKDLQH-------F--RQLVVFLVHNFRVDNS-LLEKRGALIIRRLCV 385 (680)
Q Consensus 338 ~~al~lLa~Is~~~~~-------F--~~fm~~LL~lf~~d~~-lLe~rg~~IIrqLc~ 385 (680)
..++++|+.|+.+... + ...++.|++++.++.. .+...+...+++|+.
T Consensus 461 ~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 9999999999853211 1 1256778888876543 444455668888875
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=6e-12 Score=144.94 Aligned_cols=345 Identities=13% Similarity=0.052 Sum_probs=230.5
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.......+++.+.++|...|+.+..++.+.++.. .+. .--+...+.|-+.|+++.+|..| ..|.++...
T Consensus 68 ~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~---~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------ 137 (618)
T 1w63_A 68 AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QDV---HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------ 137 (618)
T ss_dssp CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHH---HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------
T ss_pred CcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHH---HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------
Confidence 3445567788888999988888776665554311 111 12466677778899999999888 666665311
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
--.+.++|.+..++.+.+|.||+.|+-++..+....+. .++.+++.+..+++|.++.|+.+|..+|..+...-..
T Consensus 138 -~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 138 -EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp -HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred -HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 11456799999999999999999999999988876553 2346777778899999999999998888776421100
Q ss_pred CCCCChHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc---CCc
Q 005727 189 SPSVDYGRMAEILVQRAA---------------SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS---DKE 250 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~---------------s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls---ds~ 250 (680)
. ...+.++++.++..+. .++|..+..++++++.+....+. ..+-+-++++.+++... +.+
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchH
Confidence 0 0123444554443322 35788999999999877644322 11122234444443322 223
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC
Q 005727 251 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS 330 (680)
Q Consensus 251 ~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls 330 (680)
..+.-.|.++.. .. .. ..--....++.|...+.+++..+|..|+.+++.++...|..+.+|.+ .++.+|+
T Consensus 291 ~aV~~ea~~~i~---~l-~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~ 360 (618)
T 1w63_A 291 NAILYETVLTIM---DI-KS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLK 360 (618)
T ss_dssp HHHHHHHHHHHH---HS-CC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGG
T ss_pred HHHHHHHHHHHH---hc-CC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHcc
Confidence 445444444332 22 11 00001245677888888878889999999999999999988777654 5677889
Q ss_pred CCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh--hhHHHHHHHhhcc
Q 005727 331 DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEG 402 (680)
Q Consensus 331 D~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~--e~Iy~~La~iL~~ 402 (680)
|++..|+..++++|..+++ +..++.++..|++.+.+...-.....-..|.++|....+ +.....+-+.+..
T Consensus 361 d~d~~Ir~~alelL~~l~~-~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~ 433 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVN-GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT 433 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCC-SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 9999999999999999995 344688899999988776554455555577788877643 4444555555544
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.45 E-value=5.7e-11 Score=140.40 Aligned_cols=377 Identities=10% Similarity=0.059 Sum_probs=240.8
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccH
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L 112 (680)
++.++..|.+++..+|.+++..+..+. +..+ -...++.|.+++.+.++.||..| ..|..+.++-.....-...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~---~~~i---~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQD---DAEL---ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhh---HHHH---HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 477889999999999998887765332 2122 15577888888889999999988 7777776522111111112
Q ss_pred hhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 113 EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 113 ~~fIP~L~e~i~~-~np~vR~~avswI~~L~sip~~--~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
+..+|.|.+.+.. .++.+|..++..+..+...+.. .+.. ...++.|.+++.+++++||..|..+|..+...-...
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 3578888888874 4999999999999998765432 1222 267889999999999999999999999887642110
Q ss_pred CC-CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCchh-HHHHHHHHHHHHHH
Q 005727 190 PS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEK-IRVVARETNEELRA 266 (680)
Q Consensus 190 ~~-~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds~~e-IR~~A~~~n~~Ll~ 266 (680)
.. +--...++.|+..+.+++..++..|+.-+..+....++.-.. .-.+.++.++..+.+.+++ .+..|..+...+-
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls- 347 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS- 347 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh-
Confidence 00 001468889999999988888877776665444211110000 0124567777777766544 4444555444322
Q ss_pred hccCCCCCCC--hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005727 267 IKADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (680)
Q Consensus 267 ~v~~~~~~ld--l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lL 344 (680)
......-. -..+++.|...+.+.+..++..|+..|..+....+.. ......+|.|++.|.+++++|+..++++|
T Consensus 348 --~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 348 --VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp --TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred --cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11100000 0246788888898888889999988888888776542 33578999999999999999999999999
Q ss_pred HHHhhccchHH------HHHHHHHHhhccc--chhHHhHHHHHHHHHHhhcCh----------hhHHHHHHHhhcccCCh
Q 005727 345 ACIAKDLQHFR------QLVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDA----------ERVYRELSTILEGEADL 406 (680)
Q Consensus 345 a~Is~~~~~F~------~fm~~LL~lf~~d--~~lLe~rg~~IIrqLc~~L~~----------e~Iy~~La~iL~~~~Dl 406 (680)
+.++.+...-. ..++.|++.+.+. ..-....+...+++|+..-+. ......|.+.|....+.
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 99995432211 2567777777552 213344556677777653221 23456677777665555
Q ss_pred hHHHHHHHHHHHHHhch
Q 005727 407 DFACTMVQALNLILLTS 423 (680)
Q Consensus 407 ~F~~~mVq~Ln~iLLTa 423 (680)
+.....+.+|.++....
T Consensus 504 ~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 504 PLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHhcCH
Confidence 66667777888776543
No 35
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.45 E-value=6.6e-12 Score=151.82 Aligned_cols=352 Identities=14% Similarity=0.119 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCCh-hHHHHH-HHHHHHHHHHhhcc-------------
Q 005727 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVKDIVTES------------- 107 (680)
Q Consensus 43 D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~-~Vr~gA-~~Ldrllkdiv~es------------- 107 (680)
+..+-||.-.|.++..+++..-+ ..|++.++.|..++..++. .+.... ..|..+-+|+....
T Consensus 101 ~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~ 177 (980)
T 3ibv_A 101 DEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNL 177 (980)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHH
Confidence 34578999999999888765332 3567777777766643332 111111 22333334443210
Q ss_pred -----ccccHhhhHHHHHHHh----cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005727 108 -----DQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (680)
Q Consensus 108 -----~~f~L~~fIP~L~e~i----~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~ 178 (680)
.+.+++.+++...+.+ ...++.++..++++++...+..+.+.+.. +.+++.+|++++| +++|.+|++|
T Consensus 178 lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~--~~~r~~A~ec 254 (980)
T 3ibv_A 178 VKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI--EELRCAACET 254 (980)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS--HHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC--hHHHHHHHHH
Confidence 0012333344444443 34789999999999998888666555544 8999999999987 7888888888
Q ss_pred HHHHHHHhh-------------------------------------------------cCCC-----------CChHHHH
Q 005727 179 LWEFLQEIK-------------------------------------------------NSPS-----------VDYGRMA 198 (680)
Q Consensus 179 L~~fL~ei~-------------------------------------------------~~~~-----------~d~~~II 198 (680)
|.+++..-. +.++ .++..++
T Consensus 255 L~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll 334 (980)
T 3ibv_A 255 MTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLF 334 (980)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTH
T ss_pred HHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHH
Confidence 765532110 0010 2345788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHh----c-----CcccccchHhHHHHHhhhhcCCch---------h----HHHH
Q 005727 199 EILVQRAASPDEFTRLTAITWINEFVKL----G-----GDQLVPYYADILGAILPCISDKEE---------K----IRVV 256 (680)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~e~~~l----~-----~~~l~pfLp~LLp~LL~~Lsds~~---------e----IR~~ 256 (680)
+.++..+.++++++...++..+..++.. . ...+.|++++++++++..|.++++ + .++
T Consensus 335 ~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e- 413 (980)
T 3ibv_A 335 PYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQE- 413 (980)
T ss_dssp HHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHH-
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHH-
Confidence 8999999999999888888866666543 2 244679999999999999987421 1 222
Q ss_pred HHHHHHHHHHhccCCCCCCChH----hHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhhH------hhhhHHHHH
Q 005727 257 ARETNEELRAIKADPADGFDVG----PILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEV------LHFLNDIFD 323 (680)
Q Consensus 257 A~~~n~~Ll~~v~~~~~~ldl~----~iL~vL~~~L~---~~~~~tR~aaL~WL~~L~~~~p~~~------~~~l~~l~p 323 (680)
.++..+.+++.+.--+...-++ .+.+.+.+.+. +.+|..+++++..++.++++++... .++++.+++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 2333333444332111111112 44455656663 3569999999999999999988633 357778888
Q ss_pred HHHHhcC-----CCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHH--hhcccchhHHhHHHHHHHHHHhhcCh---
Q 005727 324 TLLKALS-----DPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVH--NFRVDNSLLEKRGALIIRRLCVLLDA--- 389 (680)
Q Consensus 324 ~LL~~Ls-----D~s~eV~~~al~lLa~Is~----~~~~F~~fm~~LL~--lf~~d~~lLe~rg~~IIrqLc~~L~~--- 389 (680)
.+.+.++ ++.+.|+..++|+++++++ +.+|+.++++.++. .+.+.++-+..|+...++++|+...+
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh
Confidence 8877765 8899999999999999993 67899999999999 88877666778999999999998765
Q ss_pred ---hhHHHHHHHhhc
Q 005727 390 ---ERVYRELSTILE 401 (680)
Q Consensus 390 ---e~Iy~~La~iL~ 401 (680)
+.|...+.++|.
T Consensus 574 ~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 574 NYTESSLAMLGDLLN 588 (980)
T ss_dssp SSHHHHHHHTTGGGC
T ss_pred hHHHHHHHHHHHhhc
Confidence 567777777776
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.45 E-value=4e-11 Score=134.73 Aligned_cols=382 Identities=15% Similarity=0.101 Sum_probs=252.0
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHh-----hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCch
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE-----EFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDI 147 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~-----~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~ 147 (680)
++.+.+.+.+.|++++-.| ..+-+++. .+ ...+++ -.||.|.+.+. ..+|.++..|...|.++.+..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls---~e-~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLS---RE-KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHT---CS-SCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc---CC-CCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4555666777888777666 66655531 11 111121 15899999996 56799999999999999887664
Q ss_pred hhhhchH-HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 005727 148 DMLGFLP-DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDE-----FTRLTAITWI 220 (680)
Q Consensus 148 ~Li~~Lp-~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~-~~d~~~II~iLl~~~~s~d~-----~irl~Al~WL 220 (680)
.-..... ..++.|.++|.+++++||+.|..+|+.+...-.... .+--...++.|+..+.+++. .++..+...+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 4333333 367888889999999999999999998863211000 00113456777777776652 3344455555
Q ss_pred HHHHHhc-CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCC---CChHhHHHHHHHhcCCCcHHHH
Q 005727 221 NEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATR 296 (680)
Q Consensus 221 ~e~~~l~-~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~---ldl~~iL~vL~~~L~~~~~~tR 296 (680)
..++.-. +..-......++|.+...+.+++++++..|..+...+. ....+. +--..+++.|.+.+.+++..++
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 291 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT---DGPNERIEMVVKKGVVPQLVKLLGATELPIV 291 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT---SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh---hchhhhHHHHHhcccchhhhhhhcCCChhhh
Confidence 5554322 22223345789999999999999999988887766432 111000 0013467888899999999999
Q ss_pred HHHHHHHHHHHhhChhhHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH------HHHHHHHHhhcccc
Q 005727 297 IEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDN 369 (680)
Q Consensus 297 ~aaL~WL~~L~~~~p~~~~~~-l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~------~fm~~LL~lf~~d~ 369 (680)
..++..++.+..+.+...... -.+.+|.|++.|++++++|+..++|+|+.|+.+...-. .+++.|+.++.+..
T Consensus 292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 999999999988776543332 23577888899999999999999999999995432211 26777888887776
Q ss_pred hhHHhHHHHHHHHHHhhcChhh--------HHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHH---HHHHHHHhhccC
Q 005727 370 SLLEKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQALNLILLTSSEL---SELRDLLKKSLV 438 (680)
Q Consensus 370 ~lLe~rg~~IIrqLc~~L~~e~--------Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL---~~lR~~L~~~l~ 438 (680)
.-.+..+...+.+|+..-+.+. +.+.|.+.|. ..|.+.+......|.+|+-.++.+ ..++..+..
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee--- 447 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE--- 447 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH---
Confidence 6556667788999987655543 3456666664 467888888889999888665543 333333332
Q ss_pred CcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHH
Q 005727 439 NPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL 480 (680)
Q Consensus 439 ~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~ 480 (680)
..+.+... ..=.|... +-|+.|++||.+|
T Consensus 448 -~ggl~~ie---~Lq~~~n~---------~i~~~A~~iie~y 476 (510)
T 3ul1_B 448 -CGGLDKIE---ALQRHENE---------SVYKASLNLIEKY 476 (510)
T ss_dssp -TTHHHHHH---HGGGCSSH---------HHHHHHHHHHHHH
T ss_pred -cCcHHHHH---HHHcCCCH---------HHHHHHHHHHHHH
Confidence 12222222 22223333 5799999999776
No 37
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.44 E-value=6.7e-12 Score=149.91 Aligned_cols=251 Identities=18% Similarity=0.263 Sum_probs=201.9
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc--chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~--~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.++..+.+.+.|+..- ..|+.++..+++.... ...+|+-.+++.++..++|.+..||++| .+.+.+++.+ +
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~----~ 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV----N 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS----C
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC----C
Confidence 5778888888887555 8888888888754432 4568888889999999999999999999 6667666533 3
Q ss_pred cccHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005727 109 QFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~-np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~ 187 (680)
..++..++|.|.+.+.+. .|+.+..++..+..+....+..+...+|+++|.+-..+.|..++|+++|..++..++..+.
T Consensus 128 ~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999755 6999999999999999777888999999999999999999999999999999998887665
Q ss_pred cCCCCChHHHHHHHHHhcCCCCH--------------------------------------HHHHHHHHHHHHHHHh--c
Q 005727 188 NSPSVDYGRMAEILVQRAASPDE--------------------------------------FTRLTAITWINEFVKL--G 227 (680)
Q Consensus 188 ~~~~~d~~~II~iLl~~~~s~d~--------------------------------------~irl~Al~WL~e~~~l--~ 227 (680)
+ .|+.++||.|+.++.+|++ .++..+...+..++++ .
T Consensus 208 n---~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 208 N---KDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp C---TTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred C---cchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 4 5788888888888777753 4455666677777776 4
Q ss_pred CcccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhccC-CCC-------CCChHhHHHHHHHhcCCC
Q 005727 228 GDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKAD-PAD-------GFDVGPILSIATRQLSSE 291 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~~-~~~-------~ldl~~iL~vL~~~L~~~ 291 (680)
|.+..||+|+++|++-+... -++||+|+.|.++...+.+.... .+. .-|...++..+.+.+...
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDE 357 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTS
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhccc
Confidence 67889999999999998765 56899999999999988877554 111 235667777888888653
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.43 E-value=6.1e-11 Score=121.60 Aligned_cols=253 Identities=16% Similarity=0.062 Sum_probs=192.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~ 194 (680)
-+|.|.+.+.+.++.+|..++..++.+.. |..++.|.+++.|+++.||..|..+|+.+. . ....+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~----~-~~~~~ 88 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK----I-CKKCE 88 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC----C-CTTTH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc----c-ccccc
Confidence 37888889999999999999999997652 667888999999999999999988876552 1 12346
Q ss_pred HHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC
Q 005727 195 GRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (680)
Q Consensus 195 ~~II~iLl~-~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~ 273 (680)
+.+++.+.. ...++++.+|..|+..++.+....+ ++-+.+++.+...+.|+++.+|..|..+.+.+ ++
T Consensus 89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~----~~--- 157 (280)
T 1oyz_A 89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI----ND--- 157 (280)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc----CC---
Confidence 777777764 4678899999999999987754332 35678999999999999999999988887632 11
Q ss_pred CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch
Q 005727 274 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 353 (680)
Q Consensus 274 ~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~ 353 (680)
+..++.|...+.++++.+|..|...|+.+.. ..+..+|.|++.|.|+++.||..+++.|+++.. .
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-~-- 222 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-K-- 222 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-G--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-H--
Confidence 3477888888999999999999999988742 235678999999999999999999999999983 2
Q ss_pred HHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHH
Q 005727 354 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAL 416 (680)
Q Consensus 354 F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~L 416 (680)
..++.|++.+.++. . | ...++-|... +.+.+...+-+.+.+..|-+++...++.|
T Consensus 223 --~~~~~L~~~l~d~~--v--r-~~a~~aL~~i-~~~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 223 --RVLSVLCDELKKNT--V--Y-DDIIEAAGEL-GDKTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp --GGHHHHHHHHTSSS--C--C-HHHHHHHHHH-CCGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred --hhHHHHHHHhcCcc--H--H-HHHHHHHHhc-CchhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 24555556665543 1 2 2234444443 44577888888888877777777666655
No 39
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.42 E-value=8.3e-11 Score=141.01 Aligned_cols=368 Identities=11% Similarity=0.074 Sum_probs=232.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcC-----CChhHHHHH-HHHHHHHHHHhhccc---------
Q 005727 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD-----SDANVQSAA-HLLDRLVKDIVTESD--------- 108 (680)
Q Consensus 44 ~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD-----~d~~Vr~gA-~~Ldrllkdiv~es~--------- 108 (680)
..+.||...|+++..|++..- ...|+++++.|..++.+ ++++.+.++ ..|..+.+++.....
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~---p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~ 191 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMM---PDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVR 191 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT---TTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------
T ss_pred CCHHHHHHHHHHHHHHHHHhC---ccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHH
Confidence 459999999999988876432 23488999999988765 355567777 777777766532100
Q ss_pred ---cccH-----------------------------------------hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005727 109 ---QFSI-----------------------------------------EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144 (680)
Q Consensus 109 ---~f~L-----------------------------------------~~fIP~L~e~i~~~np~vR~~avswI~~L~si 144 (680)
.-.. ..++|.+...+ .+|.+|..+++++..+.+.
T Consensus 192 ~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcc
Confidence 0012 22333333333 2566777777777777665
Q ss_pred Cc-hhhhhchHHHHHHHHHh-------cCCCChhHHHHHHHHHHHHHHH----hhcC--CCCChHHHHHHHHHhcCC---
Q 005727 145 PD-IDMLGFLPDFLDGLFNM-------LSDSSHEIRQQADSALWEFLQE----IKNS--PSVDYGRMAEILVQRAAS--- 207 (680)
Q Consensus 145 p~-~~Li~~Lp~~L~~Lf~l-------LsD~~~dVR~~a~~~L~~fL~e----i~~~--~~~d~~~II~iLl~~~~s--- 207 (680)
+. .+...++..++++++.. ..+.+.+..+..++++..+... +... ...++..+++.++....+
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~ 349 (963)
T 2x19_B 270 PDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGH 349 (963)
T ss_dssp TTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSC
T ss_pred cccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCC
Confidence 42 22233444455544432 2334556666666777776543 2111 113567888999988775
Q ss_pred --CCHHHHHHHHHHHHHHHH-h----------cCcccccchHhHHHHHhhhhcCCchh---------------HHHHHHH
Q 005727 208 --PDEFTRLTAITWINEFVK-L----------GGDQLVPYYADILGAILPCISDKEEK---------------IRVVARE 259 (680)
Q Consensus 208 --~d~~irl~Al~WL~e~~~-l----------~~~~l~pfLp~LLp~LL~~Lsds~~e---------------IR~~A~~ 259 (680)
.++.+...+++.+..+++ . ....+.|+++++++.+++.|.+++++ .|..+.+
T Consensus 350 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~ 429 (963)
T 2x19_B 350 YPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISD 429 (963)
T ss_dssp TTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHH
Confidence 356677777775445544 2 12235689999999999999765332 1223333
Q ss_pred HHHHHHHhccCCCCCCChHhHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHH
Q 005727 260 TNEELRAIKADPADGFDVGPILSIATRQL----SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (680)
Q Consensus 260 ~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L----~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~e 335 (680)
+...+....++ .-++.+++.+.+.+ .+.+|..|++++.+++.+++++..+..++++.+++.+ ..+.++++.
T Consensus 430 ~L~~~~~~~~~----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~ 504 (963)
T 2x19_B 430 TLMYVYEMLGA----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQ 504 (963)
T ss_dssp HHHHHHHHHTH----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHH
T ss_pred HHHHHHHHccH----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHH
Confidence 33332222210 01244555666666 6778999999999999999999888788888888854 466777889
Q ss_pred HHHHHHHHHHHHhh----ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh------hhHHHHHHHhhccc-C
Q 005727 336 VVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-A 404 (680)
Q Consensus 336 V~~~al~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~------e~Iy~~La~iL~~~-~ 404 (680)
|+..++|+++++++ +.+|++.+++.++..+.+ +.+..++...++++|...+. +.|...+..++.+. -
T Consensus 505 vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~ 582 (963)
T 2x19_B 505 LADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIH 582 (963)
T ss_dssp HHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 99999999999983 457899999999998865 44556777888889876433 45555555555532 1
Q ss_pred ChhHHHHHHHHHHHHHhch
Q 005727 405 DLDFACTMVQALNLILLTS 423 (680)
Q Consensus 405 Dl~F~~~mVq~Ln~iLLTa 423 (680)
+.+--..+...+..+.-+.
T Consensus 583 ~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 2233334455555555433
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.41 E-value=1.2e-10 Score=131.20 Aligned_cols=385 Identities=14% Similarity=0.084 Sum_probs=249.2
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccH-----hhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCch
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI-----EEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDI 147 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L-----~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~ 147 (680)
++.+.+.+.+.|++++-.| ..+-+++ -.+. ..++ ...||.|.+.+. +.+|.++..++..|.++.+..+.
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklL---s~~~-~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLL---SREK-QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TSSS-CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH---cCCC-CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4556666777788777666 5444443 1111 1111 236899999996 56799999999999999887654
Q ss_pred hhhhch-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 005727 148 DMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDE-----FTRLTAITWI 220 (680)
Q Consensus 148 ~Li~~L-p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~-~~~d~~~II~iLl~~~~s~d~-----~irl~Al~WL 220 (680)
.-...+ ...++.|.+++.+++++||..|..+|+.+...-... ..+--.+.++.|+..+..++. .+...+...+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 322222 357788889999999999999999998886311000 000013456777877776552 2334444444
Q ss_pred HHHHHhc-CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHH
Q 005727 221 NEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 299 (680)
Q Consensus 221 ~e~~~l~-~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aa 299 (680)
..++.-. +..-.....+++|.+...+.+++++++..|..+...+...-.+....+--..+++.|.+.+.+++..++..+
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 4443322 112233467899999999999999999888777654332100000000013467888888999999999999
Q ss_pred HHHHHHHHhhChhhHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH------HHHHHHHHhhcccchhH
Q 005727 300 LHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNSLL 372 (680)
Q Consensus 300 L~WL~~L~~~~p~~~~~~-l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~------~fm~~LL~lf~~d~~lL 372 (680)
+..++.++.+.+...... -.+.+|.|++.|++++++|+..++|+|+.|+.+..... .+++.|+.++.+...-.
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999988776543322 23577889999999999999999999999995433221 26777888887776555
Q ss_pred HhHHHHHHHHHHhhcChhh--------HHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHH---HHHHHHHhhccCCcc
Q 005727 373 EKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQALNLILLTSSEL---SELRDLLKKSLVNPA 441 (680)
Q Consensus 373 e~rg~~IIrqLc~~L~~e~--------Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL---~~lR~~L~~~l~~~~ 441 (680)
...+...+.+|+..-+.|. +.+.|.+.|. ..|.+.+......|.+|+-.++.+ ..++..+.. -.
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee----~g 468 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE----CG 468 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHH----CC
Confidence 5667778999987666543 3455666664 467888888888898888655433 233333322 11
Q ss_pred hHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHH
Q 005727 442 GKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL 480 (680)
Q Consensus 442 ~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~ 480 (680)
+.+....| =.|.-. +-|+.|+.||.+|
T Consensus 469 gl~~ie~L---q~~~n~---------~i~~~A~~iie~y 495 (529)
T 3tpo_A 469 GLDKIEAL---QRHENE---------SVYKASLNLIEKY 495 (529)
T ss_dssp CHHHHTGG---GGCSSH---------HHHHHHHHHHHHH
T ss_pred cHHHHHHH---HcCCCH---------HHHHHHHHHHHHH
Confidence 22221111 123333 5799999999776
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.40 E-value=7.5e-12 Score=122.08 Aligned_cols=187 Identities=23% Similarity=0.180 Sum_probs=152.6
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
..+-....+.++..+.|+|+.||..|+++|..+.. ++.++.|.+++.|+++.||..| ..|.++ .
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~- 73 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----G- 73 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C-
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----C-
Confidence 44556677899999999999999999999976531 2356777788899999999988 665553 1
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
-+..+|.|.+.+.+++|.+|..++..++.+.. |+.++.|.+++.|+++.||..|..+|+.+-.
T Consensus 74 ------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 74 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 12468999999999999999999999998643 3456777889999999999999999887631
Q ss_pred hhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 186 i~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
+..++.|+..+.++++.+|..|+.+++.+ + -++.++.+...+.|+++.+|..|.++.+.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~---~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEI---G-------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999876 2 267888899999999999999999887653
No 42
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.39 E-value=2.2e-09 Score=128.66 Aligned_cols=363 Identities=10% Similarity=0.082 Sum_probs=242.3
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
.+++..+++ ++..+.++++.||..||..+...++..... ..+++.+++.|...+.| +.|+..| .++.+++++.-.
T Consensus 485 ~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 485 SDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp CSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred hHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 467777777 566778789999999999998877654432 25677888888887766 7788888 888888876433
Q ss_pred ccccccHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcC-----CCChhHHHH---
Q 005727 106 ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLS-----DSSHEIRQQ--- 174 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~--~np~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLs-----D~~~dVR~~--- 174 (680)
.-.. .++.++..+...+.. .+...|..+++.++.+.... +.+..+|+..+++.+...+. +.+++.+..
T Consensus 561 ~l~p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 639 (963)
T 2x19_B 561 DLPP-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVH 639 (963)
T ss_dssp GCTT-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHH
T ss_pred HHHh-hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2222 256666666666664 46799999999999887744 47889999999998876552 236666653
Q ss_pred HHHHHHHHHHHhhcCCC-----------------C-----ChHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 175 ADSALWEFLQEIKNSPS-----------------V-----DYGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 175 a~~~L~~fL~ei~~~~~-----------------~-----d~~~II~iLl~~~~--s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
+..+|..+.+.+..... . -++.+++++..-+. ..+..+...++..++.++...|+.
T Consensus 640 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 640 ILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence 44556666666643110 0 13455565544332 346778888899999999888999
Q ss_pred cccchHhHHHHHhhhhcC-CchhHHHHHHHHHHHHHHhccCCCC-CCChHhHHHHHHHh----c---CCCcHHHHHHHHH
Q 005727 231 LVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQ----L---SSEWEATRIEALH 301 (680)
Q Consensus 231 l~pfLp~LLp~LL~~Lsd-s~~eIR~~A~~~n~~Ll~~v~~~~~-~ldl~~iL~vL~~~----L---~~~~~~tR~aaL~ 301 (680)
+.||+|.+++.++..... ..+. .....+.+....+.... .-.++.+++.+.+. + ..+..++|.+...
T Consensus 720 ~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ 795 (963)
T 2x19_B 720 FAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQ 795 (963)
T ss_dssp TGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHH
Confidence 999999999998886653 2222 22233333332121111 11123333333222 1 2346789999999
Q ss_pred HHHHHHhhChhhHh--hh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------cchHHHHHHHHHHhhcc
Q 005727 302 WISTLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFLVHNFRV 367 (680)
Q Consensus 302 WL~~L~~~~p~~~~--~~-l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~-----------~~~F~~fm~~LL~lf~~ 367 (680)
.+..+.+.+|..+. +. ++.+++.++..|.+++..+...+++.|..+.+. ..++..++..++..+.+
T Consensus 796 ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 875 (963)
T 2x19_B 796 LLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGG 875 (963)
T ss_dssp HHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999886 55 889999999999999999999999999987742 24566667677666643
Q ss_pred c--chhHHhHHHHHHHHHHhhcChhhHHHHHHHhh
Q 005727 368 D--NSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (680)
Q Consensus 368 d--~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL 400 (680)
. +..++. .+.|++.|... .++.+...+.+.+
T Consensus 876 ~~~~~~~~~-~~~il~~l~~~-~~~~~~~~l~~~l 908 (963)
T 2x19_B 876 QASRSLMDC-FADILFALNKH-CFSLLSMWIKEAL 908 (963)
T ss_dssp TSCGGGHHH-HHHHHHHHHHH-SHHHHHHHHHHHT
T ss_pred cCChhHHHH-HHHHHHHHHHH-ChHHHHHHHHHHh
Confidence 2 444443 34456655443 3344444555555
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.39 E-value=9e-12 Score=122.43 Aligned_cols=182 Identities=24% Similarity=0.209 Sum_probs=150.1
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
+..++.++..+.|+|+.||..|+++|..+.. ++.++.|.+++.|+++.||..| ..|.++ .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~----- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----G----- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHH----C-----
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhh----C-----
Confidence 5677889999999999999999999876531 2457778888899999999988 666554 1
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
-+..+|.|.+.+.+.++.+|..++..++.+.. ++.++.|.+++.|++++||..+..+|+.+-
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------ 140 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------ 140 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------
Confidence 13468999999999999999999999998753 345677888999999999999999988762
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 190 ~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
-+..++.|+..+.++++.+|..|+..++.+ ++ ++.++.+...+.|+++++|..|.++...
T Consensus 141 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 141 ----DERAVEPLIKALKDEDGWVRQSAADALGEI---GG-------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CS-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 145788888889999999999999999866 22 7889999999999999999999888764
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.39 E-value=1.3e-11 Score=138.66 Aligned_cols=307 Identities=18% Similarity=0.134 Sum_probs=214.1
Q ss_pred hHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhccchhhhH-HHHHHHHHHhhcCCChhHHHHH-HHHHHHHH------HH
Q 005727 33 IVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVK------DI 103 (680)
Q Consensus 33 Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~~il~~f-~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk------di 103 (680)
++|+++..|. ++++.+|+.|+.+|.||+........... ...++.|.+++.+++..||..| .+|..+.. +.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999997 45689999999999999753221111111 1367889999999999999998 78887754 33
Q ss_pred hhccccccHhhhHHHHHHHhcCCCH-----HHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS 177 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~~np-----~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~ 177 (680)
+.+.+ .+|.|...+...+. .+...+...+..+.... +..-......+++.|.+++.+++++|+..|+.
T Consensus 181 v~~~G------~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 181 VIKHG------AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHTT------CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHcC------ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence 43433 57888888875543 45566777777776532 22224456788899999999999999999999
Q ss_pred HHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCchhHHH
Q 005727 178 ALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRV 255 (680)
Q Consensus 178 ~L~~fL~ei~~~-~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds~~eIR~ 255 (680)
+|..+...-... ..+--..+++.|+..+.++++.++..|+..++.++...+..-.. .-.+.++.+...+.++++++|.
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHH
Confidence 988775311000 00012357888999999999999999999998875433211100 1134556667778888999999
Q ss_pred HHHHHHHHHHHhccCCCCC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcC
Q 005727 256 VARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALS 330 (680)
Q Consensus 256 ~A~~~n~~Ll~~v~~~~~~---ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~Ls 330 (680)
.|..+...+. ....+. +--..+++.|...+.+.+..+|..|...|..+......+...++ .+.++.|++.|.
T Consensus 335 ~A~~aL~nl~---a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 335 EATWTMSNIT---AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp HHHHHHHHHT---TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHH---cCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 8887766432 111000 00125788899999999999999999999988887544333332 367899999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 005727 331 DPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 331 D~s~eV~~~al~lLa~Is 348 (680)
.++++++..+++.|..|.
T Consensus 412 ~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 412 AKDTKIIQVILDAISNIF 429 (510)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998876
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.38 E-value=2.8e-10 Score=138.46 Aligned_cols=333 Identities=13% Similarity=0.045 Sum_probs=217.3
Q ss_pred CHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc-------------c--
Q 005727 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES-------------D-- 108 (680)
Q Consensus 45 d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es-------------~-- 108 (680)
++.||...|.++..|++..- ...|+++++.|..+++ ++++.+.++ ..|..+.+++..-+ +
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~---p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l 188 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEW---PQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSM 188 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHT---TTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC---cccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 47899999999988876432 2468899999998886 556667777 77777777765310 0
Q ss_pred cccHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHH-
Q 005727 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQE- 185 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf-~lLsD~~~dVR~~a~~~L~~fL~e- 185 (680)
.-.++.+.+.+...+. ..++.+|..++.++..+.+-.+.+.+. -+.+++.++ .+++ ++++|.+|.+||..++..
T Consensus 189 ~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~-~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 189 SKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIY-ETNILELLSTKFMT--SPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH-SSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHh-hhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC
Confidence 0113344444444443 346788988888887765533322211 134445444 2222 455555555554444321
Q ss_pred ------------------------------------------------------------------hhcCC--CCChHHH
Q 005727 186 ------------------------------------------------------------------IKNSP--SVDYGRM 197 (680)
Q Consensus 186 ------------------------------------------------------------------i~~~~--~~d~~~I 197 (680)
+...+ ...+..+
T Consensus 266 ~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (1049)
T 3m1i_C 266 IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNA 345 (1049)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 10000 0123446
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH-h-----cCcccccchHhHHHHHhhhhcCCch--------------------
Q 005727 198 AEILVQRAASPDEFTRLTAITWINEFVK-L-----GGDQLVPYYADILGAILPCISDKEE-------------------- 251 (680)
Q Consensus 198 I~iLl~~~~s~d~~irl~Al~WL~e~~~-l-----~~~~l~pfLp~LLp~LL~~Lsds~~-------------------- 251 (680)
++.++.....+++++...|++++..+++ + ....+.|+++++++.+++.|.++++
T Consensus 346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d 425 (1049)
T 3m1i_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1049)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccch
Confidence 7778877778888999999886666655 1 2334678999999999999975321
Q ss_pred --hHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHh-hhhHHHHHHHH
Q 005727 252 --KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLL 326 (680)
Q Consensus 252 --eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~~~-~~l~~l~p~LL 326 (680)
+.|..+.++...+.....+ .=++.+++.+.+.+. +.+|..|++++..++.+++++..... ++++.+++.++
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~----~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVI----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHH----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 2244445554444332211 002444556666665 46799999999999999988877654 55888888888
Q ss_pred HhcC-----CCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcC
Q 005727 327 KALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (680)
Q Consensus 327 ~~Ls-----D~s~eV~~~al~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~ 388 (680)
.... |+.+.|+..++|++++++ .+.+|+.++++.+++.+.+..+.+..++..-++++|...+
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7432 455666668999999998 3568999999999999988777778888999999998754
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.37 E-value=2.7e-11 Score=119.03 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=154.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
+..+|.|.+.+.+.++.+|..++..+..+.. +..++.|.+++.|+++.||..+..+|+.+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4468899999999999999999999997653 456778888999999999999988887653
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCC
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~ 272 (680)
-+..++.|+..+.++++.+|..|+..++.+ +. ++.++.+.+.+.|+++++|..|..+.+.+ ++
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~---~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~-- 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQI---GD-------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD-- 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC--
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC--
Confidence 145788888899999999999999998865 22 46778888899999999999998888753 21
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005727 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~ 350 (680)
+..++.|...+.++++.+|.+++..|+.+.. +..++.|.+.+.|+++.||..+.+.|..+..+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4678889999999999999999999998843 66788899999999999999999999998843
No 47
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.35 E-value=4.1e-10 Score=135.42 Aligned_cols=313 Identities=10% Similarity=0.062 Sum_probs=207.9
Q ss_pred hhhhhhhHHHHhhccC--CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFS--DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~--D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdi 103 (680)
.++++.+++ ++..+. |+++.||+.||.++...++..... ..+++.+++.|.+.+ | +.|+..| .++.+++++.
T Consensus 500 ~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 500 KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp -CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 467788888 666666 779999999999998887655432 268889999998877 4 6777777 8888888754
Q ss_pred hhccccccHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhc----CCC--ChhHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNML----SDS--SHEIRQQ 174 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~--~np~vR~~avswI~~L~s-ip~~~Li~~Lp~~L~~Lf~lL----sD~--~~dVR~~ 174 (680)
-.+-. ..++.++..+.+.+.. .+...|..+++.++.+.. +++.+..+|+..+++.+.+.+ ..+ +++-+..
T Consensus 575 ~~~l~-p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~ 653 (971)
T 2x1g_F 575 QLQLK-PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIR 653 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHH
T ss_pred HHhcc-ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Confidence 33222 2255566666666665 467999999999998765 566788888888888887543 232 4444444
Q ss_pred HHHHHH---HHHHHhhcC----------CCC---ChHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhcCcccccchH
Q 005727 175 ADSALW---EFLQEIKNS----------PSV---DYGRMAEILVQRAAS--PDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (680)
Q Consensus 175 a~~~L~---~fL~ei~~~----------~~~---d~~~II~iLl~~~~s--~d~~irl~Al~WL~e~~~l~~~~l~pfLp 236 (680)
...+++ .+++.++.. ++. ..+.+++++..-+.. .++.+...++..++.++...|..+.||+|
T Consensus 654 ~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~ 733 (971)
T 2x1g_F 654 TIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ 733 (971)
T ss_dssp HHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH
T ss_pred HHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH
Confidence 444444 444444321 111 246677776665432 36788888999999988887888999999
Q ss_pred hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCC-CChHhHHHH----HHHhcCC-------CcHHHHHHHHHHHH
Q 005727 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADG-FDVGPILSI----ATRQLSS-------EWEATRIEALHWIS 304 (680)
Q Consensus 237 ~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~-ldl~~iL~v----L~~~L~~-------~~~~tR~aaL~WL~ 304 (680)
.+++.++..+..... ..+....+.+....+..... -.+..++.. ....+.. +..+++.+.+..+.
T Consensus 734 ~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~ 810 (971)
T 2x1g_F 734 DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLT 810 (971)
T ss_dssp HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHH
Confidence 999999988775321 22334444333333221100 012333332 2222222 35678999999999
Q ss_pred HHHhhChhhHh--hh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 305 TLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 305 ~L~~~~p~~~~--~~-l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
.+..++|..+. |. ++.+++..+.+|.-++......++..|..+.
T Consensus 811 ~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 811 QIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999987 78 8999999999998777778888888887755
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.34 E-value=2.7e-10 Score=131.28 Aligned_cols=331 Identities=13% Similarity=0.069 Sum_probs=221.2
Q ss_pred hhHHHHhhccCC-CCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 32 QIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 32 ~Iv~~VL~~l~D-~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
.++++++..+.+ +++.+|..|+.+|.++++...+.....=...++.|.+++.++++.|+..| ..|.++..+--.....
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 135 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence 578888888875 48999999999999876432211000112478889999999999998888 8888876542110001
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhh-hchHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHhh
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li-~~Lp~~L~~Lf~lLsD~~-~dVR~~a~~~L~~fL~ei~ 187 (680)
..-...+|.|.+.+.+.++.++..++..+..+....+..-. -.=...++.|.+++.+.+ .+++..+..+|..+..
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--- 212 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--- 212 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc---
Confidence 11134799999999999999999999999988864332111 111245677777887765 4566777777665542
Q ss_pred cCCCC--Ch--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 188 NSPSV--DY--GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 188 ~~~~~--d~--~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
.+.. .+ ...++.|+..+.++++.++..++..+..++...+.. .....++|.++..+.++++++|..|..+...
T Consensus 213 -~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp -CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1110 01 347889999999999999999998888887654432 3356899999999999999999998887765
Q ss_pred HHHhccCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhhH--h--hhhHHHHHHHHHhcCCCC-HHH
Q 005727 264 LRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTEV--L--HFLNDIFDTLLKALSDPS-DEV 336 (680)
Q Consensus 264 Ll~~v~~~~~~ldl~~iL~vL~~~L~~--~~~~tR~aaL~WL~~L~~~~p~~~--~--~~l~~l~p~LL~~LsD~s-~eV 336 (680)
+..--.+....+--...++.|.+.+.+ +.+.+|..|+..|+.+....++.- . -...+.+|.|++.|.+++ +.|
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 422100000000001356666666654 237899999999999986554311 1 112357899999999886 699
Q ss_pred HHHHHHHHHHHhhccchHH-----HHHHHHHHhhccc
Q 005727 337 VLLVLEVHACIAKDLQHFR-----QLVVFLVHNFRVD 368 (680)
Q Consensus 337 ~~~al~lLa~Is~~~~~F~-----~fm~~LL~lf~~d 368 (680)
+..++|+|+.++.+...-. .+++.|++.+.+.
T Consensus 370 ~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999995433211 2566666666553
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.34 E-value=7.1e-10 Score=133.38 Aligned_cols=352 Identities=12% Similarity=0.078 Sum_probs=230.9
Q ss_pred hhhhhhhHHHHhhccCC-----CCHHHHHHHHHHHHHHHHhh-------c-----cchhhhHHHHHHHHHHhhc---CC-
Q 005727 27 ETILQQIVPPVLNSFSD-----QDSRVRYYACEALYNIAKVV-------R-----GDFIIFFNQIFDALCKLSA---DS- 85 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D-----~d~rVR~~A~eaL~nI~kv~-------~-----~~il~~f~eIfd~L~kL~a---D~- 85 (680)
.+++..+++.++.+... .+.+|+..|++-+++++... + ....+++..+++.+++-+. |.
T Consensus 343 ~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~ 422 (971)
T 2x1g_F 343 SILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS 422 (971)
T ss_dssp HHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT
T ss_pred cHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 35677788888877643 57889999999988876521 1 1224678888888875542 11
Q ss_pred ----Ch-------hHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCCchh
Q 005727 86 ----DA-------NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-----LNPYVRQFLVGWITVLDSVPDID 148 (680)
Q Consensus 86 ----d~-------~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~-----~np~vR~~avswI~~L~sip~~~ 148 (680)
|+ +.|.++ +.| +++..-.+..-++.+++.+.+.+.. .++..|+.++-.++.+......+
T Consensus 423 ~~~~d~~e~~~f~~~R~~~~~~l----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~ 498 (971)
T 2x1g_F 423 LAKWSSDDLECFRCYRQDISDTF----MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE 498 (971)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHHH----HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----
T ss_pred ccccCHhHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh
Confidence 11 234433 333 3333322323356667777666654 78899999999999998877766
Q ss_pred hhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005727 149 MLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~ 227 (680)
...++|.+++.+..+.. |+++-||..++.+++++.+-+...+ ..++.+++.++..+ + +.++..|+..+..+++-+
T Consensus 499 ~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 499 EKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp --CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 67889999995555542 6899999999999999988776543 47899999999988 3 668999999999999989
Q ss_pred CcccccchHhHHHHHhhhhcCC--chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHH----HHHhcCCC--cHHHHHHH
Q 005727 228 GDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKADPADGFDVGPILSI----ATRQLSSE--WEATRIEA 299 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Lsds--~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~v----L~~~L~~~--~~~tR~aa 299 (680)
+..+.||++.++..++..+... +.+.+..+.++.+.+...+......-.+..+++. +.+.+..+ +...+...
T Consensus 575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 654 (971)
T 2x1g_F 575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRT 654 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 9999999999999999999863 5677777778777666544310001113344333 33333333 34345555
Q ss_pred HHHHHHHHhhC----------------hhhHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh-----ccchHHH
Q 005727 300 LHWISTLLNRH----------------RTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK-----DLQHFRQ 356 (680)
Q Consensus 300 L~WL~~L~~~~----------------p~~~~~~l~~l~p~LL~~LsD--~s~eV~~~al~lLa~Is~-----~~~~F~~ 356 (680)
..++..+.... ++.+.++.+.++|.+...+.+ .++.|++.+++++++++. -.+|+.+
T Consensus 655 ~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 734 (971)
T 2x1g_F 655 IFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD 734 (971)
T ss_dssp HHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH
T ss_pred HHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH
Confidence 55555444331 234677888999988888854 367999999999999773 3467888
Q ss_pred HHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh
Q 005727 357 LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 357 fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
+++.++..+.+.+. .+ .=..+..++..++.
T Consensus 735 ~~~~l~~~~~~~~~--~~-~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 735 LCLFIVASFQTRCC--AP-TLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHHHHHCC--CC--HH-HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCc--hH-HHHHHHHHHHHhCC
Confidence 88888888776432 11 11244455555554
No 50
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.34 E-value=1.2e-10 Score=137.32 Aligned_cols=378 Identities=12% Similarity=0.038 Sum_probs=255.0
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhc-c---chh--hhHHHHHHHHHHhhcCC--ChhHHHHH-HHHHHHHH----
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVR-G---DFI--IFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVK---- 101 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~-~---~il--~~f~eIfd~L~kL~aD~--d~~Vr~gA-~~Ldrllk---- 101 (680)
|++..-+...+..+|..|..+|-++++... . .+. ....++.+.+.+++.++ |.+++..| ++|..+..
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 677777777888888888777766653221 1 111 23567888999988777 77777777 88876543
Q ss_pred --HHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch--------hhhhc----------------hH-
Q 005727 102 --DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--------DMLGF----------------LP- 154 (680)
Q Consensus 102 --div~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~--------~Li~~----------------Lp- 154 (680)
.++.+ ..+||.|.+.+.+.++.+.+.++..+.++..-++. .+..| .-
T Consensus 413 k~~lv~d------~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~ 486 (810)
T 3now_A 413 KEKLIED------KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486 (810)
T ss_dssp HHHHHHC------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred HHHHHHc------cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence 23322 23799999999999999999999999999874320 11111 00
Q ss_pred --------HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005727 155 --------DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (680)
Q Consensus 155 --------~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l 226 (680)
..++.|.+++..++++||+.|..+|..+...-.....+-=.+.++.|+.-+.++++..|..|...|..++.-
T Consensus 487 r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Confidence 357788899999999999999999988863211000011145788888888899999999999999988654
Q ss_pred cCcc-ccc--chHhHHHHHhhhhcCC-chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005727 227 GGDQ-LVP--YYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (680)
Q Consensus 227 ~~~~-l~p--fLp~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~W 302 (680)
.... ..+ -..+.+|.++..|..+ ....+..|..+...+...-.+....+-=...++.|.+.+.+++..+|.+|...
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~ 646 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 3222 111 1235778888888743 33333344444432211100000000002356778888888888899999999
Q ss_pred HHHHHhhChhhHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-cc---c-hHH--HHHHHHHHhhcccchhHH
Q 005727 303 ISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DL---Q-HFR--QLVVFLVHNFRVDNSLLE 373 (680)
Q Consensus 303 L~~L~~~~p~~~~~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-~~---~-~F~--~fm~~LL~lf~~d~~lLe 373 (680)
++.+... ++....+. .+.+|.|++.+..++.+++..++|+|+.++. ++ + .++ ..++.|++++.++..-++
T Consensus 647 L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 647 LCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 9998863 44444444 3689999999999999999999999999995 22 1 232 377788888888777778
Q ss_pred hHHHHHHHHHHhhcCh--------hhHHHHHHHhhccc--CChhHHHHHHHHHHHHH
Q 005727 374 KRGALIIRRLCVLLDA--------ERVYRELSTILEGE--ADLDFACTMVQALNLIL 420 (680)
Q Consensus 374 ~rg~~IIrqLc~~L~~--------e~Iy~~La~iL~~~--~Dl~F~~~mVq~Ln~iL 420 (680)
.++...+.++... +. ..+...|.+++... ++.+++...++.|..++
T Consensus 726 ~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 726 HRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 8899999999873 22 24455666666543 46788888888887776
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.33 E-value=3.7e-11 Score=135.38 Aligned_cols=311 Identities=17% Similarity=0.122 Sum_probs=215.2
Q ss_pred hhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH------H
Q 005727 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------D 102 (680)
Q Consensus 32 ~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk------d 102 (680)
.++|+++..+. ++++.+++.|+.+|.||+........ ..-...++.|.+++.+++..|+..| .+|..+.. +
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 46789999996 56699999999999999853322111 1112467889999999999999998 77877653 3
Q ss_pred HhhccccccHhhhHHHHHHHhcCCCH-----HHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHH
Q 005727 103 IVTESDQFSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQAD 176 (680)
Q Consensus 103 iv~es~~f~L~~fIP~L~e~i~~~np-----~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~ 176 (680)
.+.+.| .+|.|...+...+. .+...++..+..+.... +..-.......++.|.+++.+++++|+..|+
T Consensus 199 ~i~~~g------~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~ 272 (529)
T 3tpo_A 199 LVIKHG------AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 272 (529)
T ss_dssp HHHHTT------CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHcC------CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHH
Confidence 333333 57888888875543 45566777777776532 2222445677889999999999999999999
Q ss_pred HHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc-cchHhHHHHHhhhhcCCchhHH
Q 005727 177 SALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIR 254 (680)
Q Consensus 177 ~~L~~fL~ei~~~~-~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~-pfLp~LLp~LL~~Lsds~~eIR 254 (680)
.+|..+...-.... .+--..+++.|+..+.++++.++..|+..++.++.-.+..-. -.-.+.++.+...+.++++++|
T Consensus 273 ~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 273 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHH
T ss_pred HHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHH
Confidence 99887763110000 011245788899999999999999999998887543221100 0123456677777888899999
Q ss_pred HHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCCC
Q 005727 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDP 332 (680)
Q Consensus 255 ~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD~ 332 (680)
..|..+...+..--.+....+--..+++.|...+.+++..+|..|...|..+..+...+-..++ .+.+|.|++.|..+
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence 9888776644211000000000025788889999999999999999999988876433322222 35789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 005727 333 SDEVVLLVLEVHACIA 348 (680)
Q Consensus 333 s~eV~~~al~lLa~Is 348 (680)
+++++..+++.|..|.
T Consensus 433 d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 433 DTKIIQVILDAISNIF 448 (529)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998876
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=7.7e-11 Score=114.84 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=153.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
+...|.+.+.+.+.++.+|..++.++..+.. +..++.|.+++.|+++.||..+..+|+.+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4567888999999999999999999997653 345677888999999999999988877652
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCC
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~ 272 (680)
-+..++.|+..+.++++.+|..|+..++.+ +. ++.++.+...+.|+++.+|..|..+.+.+ +
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~--- 135 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQI---GD-------ERAVEPLIKALKDEDWFVRIAAAFALGEI----G--- 135 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----T---
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C---
Confidence 135678888889999999999999998865 22 46788888899999999999998887753 1
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
-+..++.|...+.++++.+|.+|+.+|+.+. .+..++.|.+.+.|+++.|+..+.+.|+++.
T Consensus 136 ----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ----DERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1567888999999999999999999999883 2567888888899999999999999998875
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.31 E-value=1.4e-09 Score=128.14 Aligned_cols=395 Identities=11% Similarity=0.050 Sum_probs=271.6
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHh--hccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv--~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
+..+++++..+..++..+|..|++++.+++.. ++..+... .+ +.|.+++.+.+..+|..| ..|.++-.+.-++.
T Consensus 289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~--gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~ 365 (810)
T 3now_A 289 EGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ--GV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDA 365 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHH--HH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTT
T ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHc--Cc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCc
Confidence 37889999999999999999999999986532 22333322 34 888888888888899988 55555532111111
Q ss_pred -----ccccHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhhh-hchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005727 108 -----DQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (680)
Q Consensus 108 -----~~f~L~~fIP~L~e~i~~~--np~vR~~avswI~~L~sip~~~Li-~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L 179 (680)
+.-++..++|.+...+.++ ++.+|+.+++.+..+..-++.-.. ..-+.+++.|+.++..+++.+...|..+|
T Consensus 366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L 445 (810)
T 3now_A 366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445 (810)
T ss_dssp SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHH
Confidence 1234678899999999887 899999999999999876663322 23367889999999888899999988898
Q ss_pred HHHHHHhhcC-----------------CC--C----C-h---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005727 180 WEFLQEIKNS-----------------PS--V----D-Y---------GRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (680)
Q Consensus 180 ~~fL~ei~~~-----------------~~--~----d-~---------~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l 226 (680)
..+...-... +. . + . ...++.|+..+.++++.+|..|...|..+..-
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 8887532100 00 0 0 1 14789999999999999999999999888632
Q ss_pred cCcccccch--HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCC---hHhHHHHHHHhcCCC-cHHHHHHHH
Q 005727 227 GGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSE-WEATRIEAL 300 (680)
Q Consensus 227 ~~~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ld---l~~iL~vL~~~L~~~-~~~tR~aaL 300 (680)
......+ ...+|.+++.+....++.|..|..+...+..... +...++ ....++.|.+.|.++ ....+..|+
T Consensus 526 --~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 526 --KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp --HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred --HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 1122221 2567888888888888889888888775543211 100111 134678888888755 445677888
Q ss_pred HHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHH------HHHHHHHhhcccchhHH
Q 005727 301 HWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQ------LVVFLVHNFRVDNSLLE 373 (680)
Q Consensus 301 ~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~------fm~~LL~lf~~d~~lLe 373 (680)
..|..|+...++.-.... .+.+|.|+..|.++++.|+..++++++.++.++..... .++.|+.++..+..-.+
T Consensus 603 ~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq 682 (810)
T 3now_A 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETA 682 (810)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHH
Confidence 899998887644222222 35789999999999999999999999999965443333 55677777776655555
Q ss_pred hHHHHHHHHHHhhcC--h------hhHHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q 005727 374 KRGALIIRRLCVLLD--A------ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (680)
Q Consensus 374 ~rg~~IIrqLc~~L~--~------e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~ 435 (680)
..+.-.+.+|+..-+ . +...+.|.+.+.. .|.+.-...+-.|.++.-.++|. ++++.+
T Consensus 683 ~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~s~e~---~~~l~e 748 (810)
T 3now_A 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMINAGEEI---AKKLFE 748 (810)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTTCHHH---HHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHhCCHHH---HHHHHH
Confidence 566778888877311 1 2445566666643 66666667777777776655543 445544
No 54
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.30 E-value=5.4e-11 Score=131.96 Aligned_cols=328 Identities=13% Similarity=0.072 Sum_probs=218.7
Q ss_pred hhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhcc--chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 32 ~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~--~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
..+++++..+. ++|+.+|..|+.+|.++++.... .+.. ...++.|.+++.++++.++..| ..|..+..+--...
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 57788888886 45999999999999997643211 1111 2477888999999999998888 77887765421111
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHH
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEI-RQQADSALWEFLQE 185 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~-Lp~~L~~Lf~lLsD~~~dV-R~~a~~~L~~fL~e 185 (680)
....-...+|.|.+.+.+.++.+|..++..+..+....+..-... =...++.|.+++.+++++. +..+..+|..+..
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~- 215 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV- 215 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-
Confidence 111113479999999999999999999999998876432111111 1145666777777665554 4555556554431
Q ss_pred hhcCCCC--C--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 186 IKNSPSV--D--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 186 i~~~~~~--d--~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
.+.. . -.+.++.|+..+.++++.++..++..+..+....+.. ....+++|.++..+.++++++|..|..+.
T Consensus 216 ---~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 216 ---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp ---STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ---CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1110 0 1357889999999999999999988888777654432 23568899999999999999999888777
Q ss_pred HHHHHhccCCCCC---CChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhh--Hhh--hhHHHHHHHHHhcCCC
Q 005727 262 EELRAIKADPADG---FDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTE--VLH--FLNDIFDTLLKALSDP 332 (680)
Q Consensus 262 ~~Ll~~v~~~~~~---ldl~~iL~vL~~~L~~--~~~~tR~aaL~WL~~L~~~~p~~--~~~--~l~~l~p~LL~~LsD~ 332 (680)
..+.. ...+. +-=...++.|.+.+.+ +++.+|..|+..|+.+....|+. ... .-.+.+|.|++.|.++
T Consensus 291 ~~L~~---~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~ 367 (529)
T 1jdh_A 291 SNLTC---NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367 (529)
T ss_dssp HHHTT---TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT
T ss_pred HHHhc---CCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc
Confidence 64421 10000 0001345666666643 44789999999999998765542 111 1224689999999998
Q ss_pred C-HHHHHHHHHHHHHHhhccchHH-----HHHHHHHHhhcccch
Q 005727 333 S-DEVVLLVLEVHACIAKDLQHFR-----QLVVFLVHNFRVDNS 370 (680)
Q Consensus 333 s-~eV~~~al~lLa~Is~~~~~F~-----~fm~~LL~lf~~d~~ 370 (680)
+ +.|+..++|+++.++.+...-. .+++.|++.+.++..
T Consensus 368 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 411 (529)
T 1jdh_A 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhH
Confidence 7 5999999999999995433222 256667776665433
No 55
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.25 E-value=8.2e-11 Score=117.13 Aligned_cols=236 Identities=15% Similarity=0.118 Sum_probs=169.5
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhh-HHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~-f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
.++.++..+.++++.+|..|+.++.+++.......... -..+++.|.+++.++++.|+..| ..|..+..+-.......
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 46889999999999999999999999875332111111 12578889999999999999888 77776643210000011
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~-~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
.-...+|.|...+.+.++.+|..++..+..+....+..-.. .-...++.|.+++.++++++|..+..+|..+...-...
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 11236999999999999999999999999998654422111 12357888999999999999999999998886411100
Q ss_pred -CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh
Q 005727 190 -PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 190 -~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pf-Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~ 267 (680)
..+--.+.++.|+..+.++++.+|..|+..+..++.-.+...... -.++++.++..+.++++++|..|..+...+...
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 000114588999999999999999999999988865332221111 246789999999999999999999988876654
Q ss_pred c
Q 005727 268 K 268 (680)
Q Consensus 268 v 268 (680)
.
T Consensus 243 ~ 243 (252)
T 4hxt_A 243 G 243 (252)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.22 E-value=1.2e-10 Score=116.06 Aligned_cols=235 Identities=11% Similarity=0.095 Sum_probs=174.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSV 192 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L-p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~-~~~ 192 (680)
-+|.|.+.+.+.++.+|..++..+..+....+....... ...++.|.+++.+++++||..|..+|..+...-... ..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 378899999999999999999999999877652222222 257888999999999999999999988876310000 000
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~ 271 (680)
--.+.++.++..+.++++.++..|+..+..+....+..-.. .-.+.+|.+++.+.++++++|..|..+...+...-.+.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 01357899999999999999999999998876433221111 12367899999999999999999888776542210000
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 272 ~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
...+--..+++.|...+.+++..+|..|+..|..+....++...... .+.+|.|++.+.+++++++..++++|+.++.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 00000135788999999999999999999999999987766544432 4688999999999999999999999999994
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.20 E-value=8.7e-09 Score=124.13 Aligned_cols=315 Identities=9% Similarity=0.083 Sum_probs=216.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhh---c-c-c---hhhhHHHHH-HHHHHhhcCC---ChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 43 DQDSRVRYYACEALYNIAKVV---R-G-D---FIIFFNQIF-DALCKLSADS---DANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 43 D~d~rVR~~A~eaL~nI~kv~---~-~-~---il~~f~eIf-d~L~kL~aD~---d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
+++++.|.+|..++..++... . + . ....+...+ ..+...+.|+ .+-||..| ..+.+....+. .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~ 491 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----K 491 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----H
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----H
Confidence 788999999999998887432 1 1 0 000222222 1223334566 88999999 88888766541 1
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-----------CchhhhhchHHHHHHHHHhcCCCC---hh--HHH
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-----------PDIDMLGFLPDFLDGLFNMLSDSS---HE--IRQ 173 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~si-----------p~~~Li~~Lp~~L~~Lf~lLsD~~---~d--VR~ 173 (680)
-.+..++|.+..++.+.++.||..|+..+..|... .+..+.+|+|.+++.|++++...+ ++ ...
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 24788899999999999999999999999998764 346689999999999999997752 11 335
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc----CC-CCHHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhc
Q 005727 174 QADSALWEFLQEIKNSPSVDYGRMAEILVQRA----AS-PDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCIS 247 (680)
Q Consensus 174 ~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~----~s-~d~~irl~Al~WL~e~~~l-~~~~l~pfLp~LLp~LL~~Ls 247 (680)
.+-+++..++...+....++++.+++.|...+ ++ .++..+..+++-|+.++.. +++.+.+|.+.++|.+...+.
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~ 651 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFS 651 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence 66778888888777665667777777666544 22 3566777788888888776 556788899999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHH--HhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHH
Q 005727 248 DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIAT--RQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (680)
Q Consensus 248 ds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~--~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~L 325 (680)
....+..+-+.+....+++... +..-.+.++++.+. ..+.... .-......+..+....++.+.+ ++.++..+
T Consensus 652 ~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~ 726 (960)
T 1wa5_C 652 EDIQEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIF 726 (960)
T ss_dssp TTCTTTHHHHHHHHHHHHHHCS--SCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHH-HHHHHHHH
Confidence 6655666666666666666552 22234677787777 5555432 2234556666666666665554 45556556
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHhhccc
Q 005727 326 LKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 326 L~~LsD~s~eV~~~al~lLa~Is~------~~~~F~~fm~~LL~lf~~d 368 (680)
-+.+.+..++ ..++++++.|.. -.+|+..++..++..+...
T Consensus 727 ~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 727 QRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666666543 678888877762 3578899999999888665
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.16 E-value=1e-09 Score=109.99 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=151.8
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 74 Ifd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
-|+.+.+++.++|+.++..| ..|.+++..--.....+--...+|.|.+.+.+.++.+|..++..+..+....+..-...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35666666777888888777 77765544311000111112479999999999999999999999999987544222222
Q ss_pred h-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005727 153 L-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (680)
Q Consensus 153 L-p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l 231 (680)
+ ...++.|.+++.+++++||..|..+|..+...- + .+.. .+.+
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----------------------~-~~~~------~~~~------ 136 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----------------------N-EQIQ------AVID------ 136 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-----------------------H-HHHH------HHHH------
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-----------------------c-hHHH------HHHH------
Confidence 2 247888999999999999999998888774210 0 0000 0000
Q ss_pred ccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 232 ~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~---ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
.+.+|.+++.+.++++++|..|..+...+.. ...+. +--..+++.|.+.+.+++..+|..|+..|+.+..
T Consensus 137 ----~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 137 ----AGALPALVQLLSSPNEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp ----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred ----CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc---CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 1234455555555555555555444442211 00000 0003467778888888888899999999999887
Q ss_pred hChhhHhhhhH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 309 RHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 309 ~~p~~~~~~l~-~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
..++......+ +.+|.|++.+.+++++|+..++++|+.+++
T Consensus 210 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 77765544433 589999999999999999999999998763
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.12 E-value=3e-10 Score=113.97 Aligned_cols=231 Identities=18% Similarity=0.111 Sum_probs=164.5
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhh-HHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~-f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
..+.+...+.++|+.+|..|+.++.++........... =..+++.|.+++.++++.++..| ..|..+..+-.......
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35677788889999999999999977654311111101 12477889999999999999888 77776643110000011
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~-Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
--...+|.|...+.+.++.+|..++..+..+...++.. -.-.-...++.|.+++.+++++||..|..+|..+...-...
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 11236999999999999999999999999998777644 22223458889999999999999999999998886411000
Q ss_pred C-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch-HhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 190 P-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 190 ~-~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL-p~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
. .+--.+.++.|+..+.++++.++..|+..+..++.-.+....... .+.+|.++..+.+.++++|..|..+...
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 000145788999999999999999999999988743333222222 3588999999999999999998877653
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.12 E-value=6.7e-08 Score=117.27 Aligned_cols=268 Identities=13% Similarity=0.104 Sum_probs=177.6
Q ss_pred hhHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC--ch--h----hhhchHHHHHHH--------------HHhcCCCChh
Q 005727 114 EFIPLLR-ERMNVLNPYVRQFLVGWITVLDSVP--DI--D----MLGFLPDFLDGL--------------FNMLSDSSHE 170 (680)
Q Consensus 114 ~fIP~L~-e~i~~~np~vR~~avswI~~L~sip--~~--~----Li~~Lp~~L~~L--------------f~lLsD~~~d 170 (680)
.+++.+. ..+ .+|..|..+++++..+.+.. +. . +...++.++..+ +....+.+.+
T Consensus 235 ~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e 312 (1023)
T 4hat_C 235 NILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS 312 (1023)
T ss_dssp SHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHH
T ss_pred hHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHH
Confidence 3677777 655 36889999999999887631 11 1 223333444333 1111233456
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCChHHHH----HHHHHhcCCCCHHHHHHHHHHHHHHHH-hc-----CcccccchHhH
Q 005727 171 IRQQADSALWEFLQEIKNSP--SVDYGRMA----EILVQRAASPDEFTRLTAITWINEFVK-LG-----GDQLVPYYADI 238 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~~--~~d~~~II----~iLl~~~~s~d~~irl~Al~WL~e~~~-l~-----~~~l~pfLp~L 238 (680)
+.+.-+..+..+++.-.... ..++.+++ .+|+.....+|.++-..+++++..+.+ +. ...+.|++.++
T Consensus 313 ~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L 392 (1023)
T 4hat_C 313 FLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQL 392 (1023)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 55555566655555432211 12444444 488888888899997778885555543 22 33478899999
Q ss_pred HHHHhhhhcCCc------h-------------hHHHHH---HHHHHHHHHhccCCCCCCC-hHhHHHHHHHhcCC--CcH
Q 005727 239 LGAILPCISDKE------E-------------KIRVVA---RETNEELRAIKADPADGFD-VGPILSIATRQLSS--EWE 293 (680)
Q Consensus 239 Lp~LL~~Lsds~------~-------------eIR~~A---~~~n~~Ll~~v~~~~~~ld-l~~iL~vL~~~L~~--~~~ 293 (680)
+++++..|.+++ + +-++.. +++...+..+.+ .+ ++.+++.+.+.+.+ ++|
T Consensus 393 ~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-----~~~~~~~~~~l~~~l~~~~~~W 467 (1023)
T 4hat_C 393 RLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-----IDTEEIMISKLARQIDGSEWSW 467 (1023)
T ss_dssp HHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHSSTTCCH
T ss_pred HHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHHhcCCCCCH
Confidence 999999999764 1 111111 122222211111 01 13344556666654 679
Q ss_pred HHHHHHHHHHHHHHhhChhh-HhhhhHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHH
Q 005727 294 ATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVH 363 (680)
Q Consensus 294 ~tR~aaL~WL~~L~~~~p~~-~~~~l~~l~p~LL~~Ls-----D~s~eV~~~al~lLa~Is----~~~~~F~~fm~~LL~ 363 (680)
..|+|++-.+|.++++..++ ..++++.++|.|+..+. |+...|+..++|++++|+ .+.+||++++..|++
T Consensus 468 ~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~ 547 (1023)
T 4hat_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFE 547 (1023)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999987654 77999999999999886 466777889999999999 378899999999999
Q ss_pred hhcccchhHHhHHHHHHHHHHhhcC
Q 005727 364 NFRVDNSLLEKRGALIIRRLCVLLD 388 (680)
Q Consensus 364 lf~~d~~lLe~rg~~IIrqLc~~L~ 388 (680)
.+.++.+.+...+..-+++||..-.
T Consensus 548 ~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 548 FMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9987766666778889999988643
No 61
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.05 E-value=2.3e-07 Score=114.65 Aligned_cols=355 Identities=12% Similarity=0.091 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc--------------
Q 005727 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-------------- 108 (680)
Q Consensus 44 ~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~-------------- 108 (680)
+++.||..+|.++..|++.-- ...|+++++.|..++.. +++.+.++ ..|..+.+|+.....
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~---p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREW---PQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHS---TTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhC---cccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 579999999999988887532 24578888888877755 44556666 666666665332000
Q ss_pred -----------------------------------------------------cccH-------hhhHHHHHHHhcCCCH
Q 005727 109 -----------------------------------------------------QFSI-------EEFIPLLRERMNVLNP 128 (680)
Q Consensus 109 -----------------------------------------------------~f~L-------~~fIP~L~e~i~~~np 128 (680)
-.++ ..+++.+...+ .++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l--~~~ 261 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL--NEQ 261 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG--GCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc--CCH
Confidence 0010 12444444433 357
Q ss_pred HHHHHHHHHHHHhhcCC--chh---hhhch-HHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHHhhc------
Q 005727 129 YVRQFLVGWITVLDSVP--DID---MLGFL-PDFLDGLFNML--------SDSSHEIRQQADSALWEFLQEIKN------ 188 (680)
Q Consensus 129 ~vR~~avswI~~L~sip--~~~---Li~~L-p~~L~~Lf~lL--------sD~~~dVR~~a~~~L~~fL~ei~~------ 188 (680)
.+|..|++++..+.+.. +.+ ++..+ +.++..++..+ .|.+.++++..++++..+...+..
T Consensus 262 ~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~ 341 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADS 341 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999998765 233 44444 55667777765 223467777777777776644432
Q ss_pred --CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh----cCcccccchHhHHHHH---hhhhcCCchh-------
Q 005727 189 --SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL----GGDQLVPYYADILGAI---LPCISDKEEK------- 252 (680)
Q Consensus 189 --~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l----~~~~l~pfLp~LLp~L---L~~Lsds~~e------- 252 (680)
....++..+++.++..+++++..+...+++++..+++- ....+.++++++++++ +..|.|++.+
T Consensus 342 ~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~ 421 (1204)
T 3a6p_A 342 DVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEY 421 (1204)
T ss_dssp SCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHH
T ss_pred cccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhh
Confidence 23457899999999999999999988888744445432 1234678999999999 7777765311
Q ss_pred -------HHH---H---HHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC-------------------------CCcHH
Q 005727 253 -------IRV---V---ARETNEELRAIKADPADGFDVGPILSIATRQLS-------------------------SEWEA 294 (680)
Q Consensus 253 -------IR~---~---A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~-------------------------~~~~~ 294 (680)
..+ . .++...++++.+.......-++-+.+.+...+. ++.|.
T Consensus 422 ~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 501 (1204)
T 3a6p_A 422 SRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFV 501 (1204)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHH
Confidence 000 0 111122222222110000002223344433332 22355
Q ss_pred HHHHHHHHHHHHHhhChhhH-hhhhH-HHHHHHHHhc---CCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHHhh
Q 005727 295 TRIEALHWISTLLNRHRTEV-LHFLN-DIFDTLLKAL---SDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNF 365 (680)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~~-~~~l~-~l~p~LL~~L---sD~s~eV~~~al~lLa~Is----~~~~~F~~fm~~LL~lf 365 (680)
..++....+.++.+++.... .++++ .++|.|+..+ +.++|.++...+.+|++++ .+.+++.+++..++..+
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l 581 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV 581 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence 67777777777777775544 24554 3556666553 4567888888888888777 36789999999999887
Q ss_pred cc------------cchhHHhHHHHHHHHHHhhcCh------hhHHHHHHHhhcccC
Q 005727 366 RV------------DNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGEA 404 (680)
Q Consensus 366 ~~------------d~~lLe~rg~~IIrqLc~~L~~------e~Iy~~La~iL~~~~ 404 (680)
.+ ..+-+..++..-++.||...+. +.|...+..++..+.
T Consensus 582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTT
T ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcc
Confidence 65 3445667788888999988755 677777777776443
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.02 E-value=2.6e-08 Score=110.28 Aligned_cols=307 Identities=14% Similarity=0.090 Sum_probs=194.8
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH------HHh
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DIV 104 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i-l~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk------div 104 (680)
-+|+++..+..+|+.+|..|+.++.+++..-...- ...-...++.|.+++.++++.++..| .+|..+.. ..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36788889999999999999999999864211100 11123467888899988999898877 77776653 222
Q ss_pred hccccccHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC--------CC--------
Q 005727 105 TESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS--------DS-------- 167 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs--------D~-------- 167 (680)
.+.| -||.|.+.+. +.++.++..++..+.++...+.... ......++.|.+++. ++
T Consensus 83 ~~~G------~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 83 RRQN------GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHTT------CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHcC------CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 2333 4888888898 8899999999999999988744221 112277888888882 22
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHH-----hc-------
Q 005727 168 SHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAAS------PDEFTRLTAITWINEFVK-----LG------- 227 (680)
Q Consensus 168 ~~dVR~~a~~~L~~fL~ei~~~~--~~d~~~II~iLl~~~~s------~d~~irl~Al~WL~e~~~-----l~------- 227 (680)
+++|.+.|..+|..+... .... -.+.++.++.|+..+++ ++..++..|+..+..+.. ++
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 455666788888877642 1100 01222566666655543 333344444433333320 00
Q ss_pred --------------------------------------Cccc-ccchHhHHHHHhhhhcCC-chhHHHHHHHHHHHHHHh
Q 005727 228 --------------------------------------GDQL-VPYYADILGAILPCISDK-EEKIRVVARETNEELRAI 267 (680)
Q Consensus 228 --------------------------------------~~~l-~pfLp~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~ 267 (680)
+... .-+-++.++.++..|..+ ++++++.|..+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl--- 311 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL--- 311 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHh---
Confidence 0000 012356777777777754 578888777665533
Q ss_pred ccCCCCC--------CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCC------
Q 005727 268 KADPADG--------FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS------ 333 (680)
Q Consensus 268 v~~~~~~--------ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s------ 333 (680)
....... +.-...++.|.+.|.+++..+|..|...|..+.. .++.-.-.-.+.+|.|+..|...+
T Consensus 312 ~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~-~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred ccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc-CHHHHHHHHHhhhHHHHHhccCCCCCCCCc
Confidence 2211100 0012467889999999999999999977777765 333222233568899999998763
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 005727 334 DEVVLLVLEVHACIAKDL 351 (680)
Q Consensus 334 ~eV~~~al~lLa~Is~~~ 351 (680)
++|+..++++|+.|..++
T Consensus 391 ~~v~~~~l~~l~ni~~~~ 408 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQ 408 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 478889999999988543
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.01 E-value=3.9e-07 Score=103.96 Aligned_cols=310 Identities=14% Similarity=0.104 Sum_probs=204.3
Q ss_pred hhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc---cchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH---
Q 005727 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK--- 101 (680)
Q Consensus 29 yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~---~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk--- 101 (680)
+-..-+|+++..|..+|..++..|+.+|.+++.... ..+. -...++.|.+++.++++.|+..| .+|..+..
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR--KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 344568999999999999999999999999874211 1121 12356889999999999999988 77766643
Q ss_pred ----HHhhccccccHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-----------
Q 005727 102 ----DIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS----------- 165 (680)
Q Consensus 102 ----div~es~~f~L~~fIP~L~e~i~~-~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs----------- 165 (680)
+.+.+.+ -||.|.+.+.. .++.++..+...+..|...+..... ....-++.|.+++.
T Consensus 123 ~~nk~~I~~~G------aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 123 QDNKIAIKNCD------GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp HHHHHHHHHTT------HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHTHHHHHCCC----
T ss_pred HHHHHHHHHcC------CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHHhccccccccccc
Confidence 3333444 47888888875 6789999999999999875542211 11334566665541
Q ss_pred ------C-CChhHHHHHHHHHHHHHHHhhc--CCCCChHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhc---
Q 005727 166 ------D-SSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEILVQRAA------SPDEFTRLTAITWINEFVKLG--- 227 (680)
Q Consensus 166 ------D-~~~dVR~~a~~~L~~fL~ei~~--~~~~d~~~II~iLl~~~~------s~d~~irl~Al~WL~e~~~l~--- 227 (680)
| ++.+|+..|..+|..+...-.+ ..-.+.+.+++.|+..++ .++..++..|+..|..+..-.
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 2 3578999888888877421000 000122345555555443 245556666776666554210
Q ss_pred ----------------------Cccccc--chHhHHHHHhhhhcC-CchhHHHHHHHHHHHHHHhccCCC----CCCChH
Q 005727 228 ----------------------GDQLVP--YYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPA----DGFDVG 278 (680)
Q Consensus 228 ----------------------~~~l~p--fLp~LLp~LL~~Lsd-s~~eIR~~A~~~n~~Ll~~v~~~~----~~ldl~ 278 (680)
+.. +. +-|..++.++..|.+ ..+++++.|..+...+..--...+ ..+.-.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~G-ve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~ 354 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARG-YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354 (584)
T ss_dssp STTCCC--------------CCCCG-GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH
T ss_pred ccchhhhhhhcccccccccccCchh-HHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc
Confidence 001 11 336778888888864 468899888887765421000000 011125
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHhh
Q 005727 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--------SDEVVLLVLEVHACIAK 349 (680)
Q Consensus 279 ~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~--------s~eV~~~al~lLa~Is~ 349 (680)
..++.|.+.|.+++..++.+|...|..+....... ...-.+.+|.|+..|.+. +++++..+|++|..|..
T Consensus 355 ~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 355 KALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999998764322 122467899999999876 57888899999999874
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.00 E-value=4.1e-09 Score=102.76 Aligned_cols=195 Identities=16% Similarity=0.090 Sum_probs=138.1
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhh-HHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~-f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
-+...+++...+.++|+.+|..|+.+|.+++.......... =..+++.|.+++.++++.|+..| .+|.++..+-....
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34556788888899999999999999999874322111111 12578889999999999999988 77777642100000
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~-Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei 186 (680)
...--...+|.|...+.+.++.+|..++..+.++....+...... =...++.|.+++.+++++||..|+.+|..+...-
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 001112368999999999999999999999999987555332222 2467899999999999999999999999887421
Q ss_pred hcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005727 187 KNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (680)
Q Consensus 187 ~~~-~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~ 224 (680)
... ..+--...++.|+..+.++++.+|..|+..|..+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 100 00111357889999999999999999998887653
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.93 E-value=8e-08 Score=115.03 Aligned_cols=256 Identities=11% Similarity=0.168 Sum_probs=194.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHh
Q 005727 86 DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNM 163 (680)
Q Consensus 86 d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~--~~Li~~Lp~~L~~Lf~l 163 (680)
....+.+|..+..+++.-+.... .+ ..++..|.+.+.+.++. ..++..+..+....+ ...-+|+=.+++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHD-VP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSS-CC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccc-cc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 44567777776666553222211 22 36888888888887655 889999998885443 24567777889999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH
Q 005727 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (680)
Q Consensus 164 LsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~L 242 (680)
.+|....||++|..+...+.+.+. ...+..++|.|+..+.+. .+..+..|+..++.+++..+..+.-.+|+++|++
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 999999999999999999988773 235688888888888755 5899999999999999988999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHhccC----------------CC---------------CCCC---hHhHHHHHHHhc
Q 005727 243 LPCISDKEEKIRVVARETNEELRAIKAD----------------PA---------------DGFD---VGPILSIATRQL 288 (680)
Q Consensus 243 L~~Lsds~~eIR~~A~~~n~~Ll~~v~~----------------~~---------------~~ld---l~~iL~vL~~~L 288 (680)
-.+|-|..+|++.+|.++...+-..+.+ +. ..++ +.-++|.|.+.|
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l 260 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGL 260 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence 9999999999999999998766555543 10 0122 456678888999
Q ss_pred CCCcHHHHHHHHHHHHHHHhh--ChhhHhhhhHHHHHHHHHhcCCC-CHHHHHHHH---HHHHHHh
Q 005727 289 SSEWEATRIEALHWISTLLNR--HRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVL---EVHACIA 348 (680)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~--~p~~~~~~l~~l~p~LL~~LsD~-s~eV~~~al---~lLa~Is 348 (680)
......++..+.-.+..+.+. .|.+..||+|.++|.+-+...-- .||+|..+- .+|.+..
T Consensus 261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 877777666666666677666 78899999999999998866543 578877554 5555554
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.88 E-value=9.4e-07 Score=106.93 Aligned_cols=366 Identities=14% Similarity=0.101 Sum_probs=237.2
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc---------cchhhhHHHHHHHHHHhh-cCCC----h----h
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------GDFIIFFNQIFDALCKLS-ADSD----A----N 88 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~---------~~il~~f~eIfd~L~kL~-aD~d----~----~ 88 (680)
...+..+++.++.|+++++..|-..+++-++......+ ....+++..+++++.+-+ -|+| . +
T Consensus 327 ~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~e 406 (980)
T 3ibv_A 327 SFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSE 406 (980)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchh
Confidence 37788999999999999999998888887776543221 112366778888877432 1111 0 0
Q ss_pred HHHH---H-HHHHHHHHHHhhccc-cccHh----hhHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCchh------hh
Q 005727 89 VQSA---A-HLLDRLVKDIVTESD-QFSIE----EFIPLLRERMN---VLNPYVRQFLVGWITVLDSVPDID------ML 150 (680)
Q Consensus 89 Vr~g---A-~~Ldrllkdiv~es~-~f~L~----~fIP~L~e~i~---~~np~vR~~avswI~~L~sip~~~------Li 150 (680)
-+.. - ..+. .++|.+.--+ ..-++ .+.+.+.+.+. ..+|+.++.++-.++.+....... ..
T Consensus 407 d~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~ 485 (980)
T 3ibv_A 407 EEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 485 (980)
T ss_dssp THHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCccc
Confidence 0110 1 1123 3444443222 22233 45555555552 456899999999999987754322 23
Q ss_pred hchHHHHHHHHHhcC-----CCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH--hcCCCCHHHHHHHHHHHHHH
Q 005727 151 GFLPDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ--RAASPDEFTRLTAITWINEF 223 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLs-----D~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~--~~~s~d~~irl~Al~WL~e~ 223 (680)
.++|.+++-+.+++. |+++-||..++.++++.-+-+...+ -.+++++++++. .+.++++.+|..|...+..|
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 678888888888765 8999999999999999988776543 468999999999 88889999999999999999
Q ss_pred HHhcCcccccchHhHHHHHhhhhcCC-----chh-----HHH-----------HHHHHHHHHHHhccCCCCC--CChHhH
Q 005727 224 VKLGGDQLVPYYADILGAILPCISDK-----EEK-----IRV-----------VARETNEELRAIKADPADG--FDVGPI 280 (680)
Q Consensus 224 ~~l~~~~l~pfLp~LLp~LL~~Lsds-----~~e-----IR~-----------~A~~~n~~Ll~~v~~~~~~--ldl~~i 280 (680)
++.++..+.||++.|+..+-+.+... +++ +++ --.++.+.+......+.+. ..++.+
T Consensus 565 ~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~l 644 (980)
T 3ibv_A 565 VKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSL 644 (980)
T ss_dssp HHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999998888732 111 011 1234444444443321110 112334
Q ss_pred HHH----HHHhcCCC----cHHHHH-HHHHHHHHHHhhChhh------HhhhhHHHHHHHHHhcC--CCCHHHHHHHHHH
Q 005727 281 LSI----ATRQLSSE----WEATRI-EALHWISTLLNRHRTE------VLHFLNDIFDTLLKALS--DPSDEVVLLVLEV 343 (680)
Q Consensus 281 L~v----L~~~L~~~----~~~tR~-aaL~WL~~L~~~~p~~------~~~~l~~l~p~LL~~Ls--D~s~eV~~~al~l 343 (680)
++. +...+... ....+. ..+.|++.++++.++. +.+.+.+..+.++..|+ ..+..||..++..
T Consensus 645 l~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~ 724 (980)
T 3ibv_A 645 INALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFT 724 (980)
T ss_dssp HHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 433 33333211 111222 5678999999987543 55667788888888887 5678899999999
Q ss_pred HHHHhh-----ccchHHHHHHHHHHhhcccchhHHhHHHH--HHHHHHhhcChhhHHHHHHHhh
Q 005727 344 HACIAK-----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL--IIRRLCVLLDAERVYRELSTIL 400 (680)
Q Consensus 344 La~Is~-----~~~~F~~fm~~LL~lf~~d~~lLe~rg~~--IIrqLc~~L~~e~Iy~~La~iL 400 (680)
+.++.. -.+++.+++..++..+.... -+.| .+.|+....+.| +|..+...+
T Consensus 725 ~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e-----~~~fL~l~~qli~~f~~~-~~~~l~~ll 782 (980)
T 3ibv_A 725 SGRIINVVGPDMLPKVPQLISILLNSIDMNE-----LVDVLSFISQLIHIYKDN-MMEITNRML 782 (980)
T ss_dssp HHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT-----HHHHHHHHHHHHHHTTTT-SHHHHHHHH
T ss_pred HHHHHHHccHhHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999883 24566666666665444322 1222 566666666665 555555544
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.86 E-value=2e-07 Score=103.56 Aligned_cols=314 Identities=13% Similarity=0.098 Sum_probs=198.8
Q ss_pred hhhHHHHhhccCCCC------------HHHHHHHHHHHHHHHHhhccc--------hhhhHHHH---HHHHHHhhcCC--
Q 005727 31 QQIVPPVLNSFSDQD------------SRVRYYACEALYNIAKVVRGD--------FIIFFNQI---FDALCKLSADS-- 85 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d------------~rVR~~A~eaL~nI~kv~~~~--------il~~f~eI---fd~L~kL~aD~-- 85 (680)
...+|.++..+.+.+ +.+|..|+.+|.||+..-.+. +++..+.+ -+.+.+++..+
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 346677777777543 699999999999998543221 12111211 12233443322
Q ss_pred --C--h-hHH--------HHHHHHHH-----HHHHHhhccccccHhhhHHHHHHHhc-----------CCCHHHHHHHHH
Q 005727 86 --D--A-NVQ--------SAAHLLDR-----LVKDIVTESDQFSIEEFIPLLRERMN-----------VLNPYVRQFLVG 136 (680)
Q Consensus 86 --d--~-~Vr--------~gA~~Ldr-----llkdiv~es~~f~L~~fIP~L~e~i~-----------~~np~vR~~avs 136 (680)
| . -|+ +++.+|.+ -.++.+.+.| .+|.|...+. ..++.++..+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G------~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~ 222 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG------GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT------HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC------CHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence 1 1 143 34455543 3445555555 3444444442 135788999999
Q ss_pred HHHHhhcCCchh--hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH--hhcCCCCChHHHHHHHHHh-cCCCCHH
Q 005727 137 WITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEILVQR-AASPDEF 211 (680)
Q Consensus 137 wI~~L~sip~~~--Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e--i~~~~~~d~~~II~iLl~~-~~s~d~~ 211 (680)
.|.++..-.+.. .+.-....++.|.++|..++++|+..|+.+|..+... -.....+--...++.|+.. ..++++.
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence 999998655422 2222466789999999999999999999998876420 0000000013467788886 4556788
Q ss_pred HHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCch----hHHHHHHHHHHHHHHhccCCCCC---CChHhHHH
Q 005727 212 TRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG---FDVGPILS 282 (680)
Q Consensus 212 irl~Al~WL~e~~~l~~~~l~pf--Lp~LLp~LL~~Lsds~~----eIR~~A~~~n~~Ll~~v~~~~~~---ldl~~iL~ 282 (680)
++..|+..+..+....++.=... -...+|.+...+.+..+ ++++.|..+...+-..+....+. +--...++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~ 382 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence 88888888877765332211111 25678888888876543 47776666655443321111000 00024678
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005727 283 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (680)
Q Consensus 283 vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~ 350 (680)
.|.+.|.+.+..++..|...|..+..+.++...... .+.+|.|+..|...++.++..++++|..++.+
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 899999998899999999999999977776654433 36899999999999999999999999999853
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.83 E-value=2.7e-05 Score=94.71 Aligned_cols=296 Identities=10% Similarity=0.039 Sum_probs=190.6
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHh------hccchhhhHHHHHHHHHHhhcCC---------------
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV------VRGDFIIFFNQIFDALCKLSADS--------------- 85 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv------~~~~il~~f~eIfd~L~kL~aD~--------------- 85 (680)
.+++..+++-++.+..++|..|+..|.+-.+.++.. .+....+++..+.+.+...+.-+
T Consensus 339 ~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r 418 (1049)
T 3m1i_C 339 RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH
Confidence 556777888889888888999999999888887652 12233467788888877543111
Q ss_pred ----Ch---hHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCCchhh-hhchH
Q 005727 86 ----DA---NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITVLDSVPDIDM-LGFLP 154 (680)
Q Consensus 86 ----d~---~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~--~~np~vR~~avswI~~L~sip~~~L-i~~Lp 154 (680)
|. +.++++ +.|+.+.. + .+..-++.+.+.+.+.+. ..+++.|..++-.++.+........ -.++|
T Consensus 419 ~~~~d~d~~~~~~~~~~~L~~l~~-~---~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 419 EFVKESDTIQLYKSEREVLVYLTH-L---NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHH-H---CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHc-c---CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 10 224334 66666543 1 111224556666766664 4689999999999998866444433 24688
Q ss_pred HHHHHHHHhcC-----CCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005727 155 DFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 155 ~~L~~Lf~lLs-----D~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
.+++.|..+.. |+++-||..++.+++++.+-+...+ ..++.+++.++..+.++++.++..|+..+..|++-++.
T Consensus 495 ~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 495 TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888777542 4566677668889998876665432 35789999999999999999999999999999988776
Q ss_pred ccc--------cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC-CCChHhHHHHHHHhcC--------CC-
Q 005727 230 QLV--------PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQLS--------SE- 291 (680)
Q Consensus 230 ~l~--------pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~-~ldl~~iL~vL~~~L~--------~~- 291 (680)
.+. ||++.++..+...+..-+.+-.....++.+.+....++... ...++.+++.+.+.+. +.
T Consensus 574 ~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 653 (1049)
T 3m1i_C 574 HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPT 653 (1049)
T ss_dssp HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGG
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 665 99999999999888875555455555665555444321000 0012333333222211 10
Q ss_pred ---cHH-HHH--HHHHHHHHHHhhChhhHhhhhHHHHHHHHH
Q 005727 292 ---WEA-TRI--EALHWISTLLNRHRTEVLHFLNDIFDTLLK 327 (680)
Q Consensus 292 ---~~~-tR~--aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~ 327 (680)
+.+ .+. ..+.-+..++...+.++.|+.+.+++.++.
T Consensus 654 ~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~ 695 (1049)
T 3m1i_C 654 LLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1049)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111 111 223445566677777888888777765543
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.83 E-value=9e-09 Score=100.34 Aligned_cols=192 Identities=18% Similarity=0.094 Sum_probs=140.9
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005727 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (680)
Q Consensus 155 ~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~-~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p 233 (680)
...+.|.+++.+++++||..|+.+|..+...-... ..+--.+.++.|+..+.++++.+|..|+..++.+..-.+..-..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34556778999999999999999998886311000 00001357899999999999999999999888775332221111
Q ss_pred -chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005727 234 -YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 234 -fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~---ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
.-...+|.++..|.+.++++|..|..+...+.. ...+. +--...++.|.+.+.+++..+|..|+..|..+...
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc---CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 124578999999999999999998887765431 10000 00135788999999999999999999999999988
Q ss_pred ChhhHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 310 HRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 310 ~p~~~~~~-l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
.++..... -.+.++.|++.+.+++++|+..++++|..+++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 76654433 33689999999999999999999999999874
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.80 E-value=1e-06 Score=97.53 Aligned_cols=273 Identities=11% Similarity=0.064 Sum_probs=163.1
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-hhhc
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGF 152 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~-Li~~ 152 (680)
++.|.+++.++++.++..| ..|.+++.+--......--...||.|.+.+.+.++.++..++..+.++....+.. ..-.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566677777778888777 6676654210000001112336999999999999999999999999998753321 1111
Q ss_pred hHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc--------CC--------CCHHHHHH
Q 005727 153 LPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA--------AS--------PDEFTRLT 215 (680)
Q Consensus 153 Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~--------~s--------~d~~irl~ 215 (680)
=-.-++.|.++|. +++++++..|..+|..+... ......=....++.|+..+ .+ .++.++..
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 1245677778898 77899999999998888642 1100000236788888877 22 24556667
Q ss_pred HHHHHHHHHHhcCcccccc-h--HhHHHHHhhhhcC------CchhHHHHHHHHHHHHH---------------------
Q 005727 216 AITWINEFVKLGGDQLVPY-Y--ADILGAILPCISD------KEEKIRVVARETNEELR--------------------- 265 (680)
Q Consensus 216 Al~WL~e~~~l~~~~l~pf-L--p~LLp~LL~~Lsd------s~~eIR~~A~~~n~~Ll--------------------- 265 (680)
|+..+..++.- ++ -... . +..+|.++..+.+ .+..+.+-|..+...+-
T Consensus 163 a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 163 ATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 88777777643 21 1111 1 2455555555542 22222222222111110
Q ss_pred -------HhccC-------------------CCCC---CChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChh---
Q 005727 266 -------AIKAD-------------------PADG---FDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRT--- 312 (680)
Q Consensus 266 -------~~v~~-------------------~~~~---ldl~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~--- 312 (680)
..+.. ...+ +--..+++.|...|. +++..++++|...|..+..+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 00000 0000 001345666666664 34578999999999988876432
Q ss_pred hH-hhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005727 313 EV-LHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (680)
Q Consensus 313 ~~-~~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~ 350 (680)
.+ .... .+.+|.|++.|.+++++|+..++|+|+.++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 23 1122 46789999999999999999999999999964
No 71
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.72 E-value=5.7e-07 Score=92.69 Aligned_cols=186 Identities=10% Similarity=0.046 Sum_probs=142.2
Q ss_pred HhhcCCChhHHHHH-HHHHHHHHHHhhccc----cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc------hh
Q 005727 80 KLSADSDANVQSAA-HLLDRLVKDIVTESD----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD------ID 148 (680)
Q Consensus 80 kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~----~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~------~~ 148 (680)
.-+.+.....|..| +.|.+++.....+.. ...+..+.+.+..++.|.|..+.+.++..+..+....+ ..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 34678888899988 666655543222111 11245678899999999999999999999998876433 23
Q ss_pred hhhchHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005727 149 MLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (680)
Q Consensus 149 Li~~Lp~~L~~Lf-~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~ 227 (680)
...+.+.++++|+ +.++|+.+.+|..+..++..++.. ......+++.++..+.+.++.++..++.||..++.-.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~-----~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-----DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT-----SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 4567788899988 569999999999988887766642 2345778899999999999999999999999998764
Q ss_pred Ccc---cccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 228 GDQ---LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 228 ~~~---l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
|.. ..+.++.+++.+.+++.|++++||+.|.++..++++.+++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 433 3457888999999999999999999999999999888764
No 72
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2e-07 Score=96.07 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=139.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-----hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPD-----IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 116 IP~L~e~i~~~np~vR~~avswI~~L~sip~-----~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
+| |.+++.+.+|..|.-+++.+..+...++ .+....+..+.+.+.+.+.|+|..|...+.+++..++......
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~- 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS- 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh-
Confidence 45 6799999999999999999876543322 2333445566677778899999999988888877776422110
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh-hhcCCchhHHHHHHHHHHHHHHhcc
Q 005727 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP-CISDKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 191 ~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~-~Lsds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
...+.....+.+.++|.++. +++++.+.+|..|.++.-.+.....
T Consensus 90 ----------------------------------~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 90 ----------------------------------SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred ----------------------------------hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 00011123456778887775 6899999999888777655444322
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH---hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005727 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV---LHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (680)
Q Consensus 270 ~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~---~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~ 346 (680)
....+++.+...+.+.++.+|.+++.||..+.+.++... .+.++.+++.+.+.|.|+++.||..+..++..
T Consensus 136 ------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 136 ------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp ------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 246778888899999999999999999999988865443 34677788899999999999999999998887
Q ss_pred Hh
Q 005727 347 IA 348 (680)
Q Consensus 347 Is 348 (680)
+-
T Consensus 210 ly 211 (278)
T 4ffb_C 210 IY 211 (278)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 73
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.63 E-value=1.1e-05 Score=98.25 Aligned_cols=332 Identities=11% Similarity=0.045 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhcc----c-----------
Q 005727 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES----D----------- 108 (680)
Q Consensus 44 ~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es----~----------- 108 (680)
+++.++.-.|.++..|++..-+ ..|++.++.+..+..+++..+..+-..|..+.+++..-. +
T Consensus 124 ~~~~vinKLa~~La~I~k~~~P---~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L 200 (1073)
T 3gjx_A 124 KEKVYIGKLNMILVQILKQEWP---KHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSM 200 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCh---hhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 4678888888888877764322 346777777777765444433333366777777764310 0
Q ss_pred cccHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH-HHhcCCCChhHHHHHHHHHHHHHHH-
Q 005727 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL-FNMLSDSSHEIRQQADSALWEFLQE- 185 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~L-f~lLsD~~~dVR~~a~~~L~~fL~e- 185 (680)
.-..+.+++.+.+.+. ..++.+...++..++.+.+-.+.+.+.. +.+++.| +++++ +++.|.+|+.||..++..
T Consensus 201 ~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 201 CNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcc
Confidence 0113445555555553 4678888888999998887655444322 5678877 67775 567999999998887653
Q ss_pred hhc--------------------------------CC---------------------------CCC----hHHHHHHHH
Q 005727 186 IKN--------------------------------SP---------------------------SVD----YGRMAEILV 202 (680)
Q Consensus 186 i~~--------------------------------~~---------------------------~~d----~~~II~iLl 202 (680)
+.+ .. .++ +...+.+++
T Consensus 278 ~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll 357 (1073)
T 3gjx_A 278 VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYML 357 (1073)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 100 00 001 122344456
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHH-h---cC---------------------cccccchHhHHHHHhhhhcCCch------
Q 005727 203 QRAASPDEFTRLTAITWINEFVK-L---GG---------------------DQLVPYYADILGAILPCISDKEE------ 251 (680)
Q Consensus 203 ~~~~s~d~~irl~Al~WL~e~~~-l---~~---------------------~~l~pfLp~LLp~LL~~Lsds~~------ 251 (680)
.....+|.++-..++..+..+.+ + .+ ..+.|++.++..+++..|..+++
T Consensus 358 ~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~ 437 (1073)
T 3gjx_A 358 LVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEN 437 (1073)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEEC
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCc
Confidence 66666777766666663322321 1 10 11566788888888888886531
Q ss_pred ---h-------------HHHHHHHHHHHHHHhccCCCCCCC-hHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChh
Q 005727 252 ---K-------------IRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRT 312 (680)
Q Consensus 252 ---e-------------IR~~A~~~n~~Ll~~v~~~~~~ld-l~~iL~vL~~~L~~--~~~~tR~aaL~WL~~L~~~~p~ 312 (680)
| .++.-.++...+..+.. -+ +..+++.+.+++.+ ++|..+++++-.+|.++....+
T Consensus 438 e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~-----~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~ 512 (1073)
T 3gjx_A 438 DQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY-----VDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHE 512 (1073)
T ss_dssp SSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCH
T ss_pred ccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCc
Confidence 0 11111222211111100 00 23344555555543 5699999999999999854443
Q ss_pred h-HhhhhHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHh----hccchHHHHHHHHHHhhcccchhHHhHHHHHHHH
Q 005727 313 E-VLHFLNDIFDTLLKALSDP-----SDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 382 (680)
Q Consensus 313 ~-~~~~l~~l~p~LL~~LsD~-----s~eV~~~al~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrq 382 (680)
+ =.++++++++.|+.....+ .+.|+...+|++++|+ .+.+||+.++..|++.+.+..+-++..+..-+.+
T Consensus 513 ~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 513 EDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 4589999999999877544 3556778899999998 4788999999999999988766666666677777
Q ss_pred HHhh
Q 005727 383 LCVL 386 (680)
Q Consensus 383 Lc~~ 386 (680)
+|..
T Consensus 593 i~~~ 596 (1073)
T 3gjx_A 593 IAQK 596 (1073)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 74
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.56 E-value=1.3e-06 Score=90.02 Aligned_cols=174 Identities=12% Similarity=0.061 Sum_probs=131.4
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---Ccccccc-hHhHH
Q 005727 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG---GDQLVPY-YADIL 239 (680)
Q Consensus 164 LsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~---~~~l~pf-Lp~LL 239 (680)
+-..+..-|.++...|...+........-.++-+++++.-++.+++..+...+++.+..++... +..+.+| ...++
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3334555555555554444443221111124456777776777889999999999999886543 2346666 48899
Q ss_pred HHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH
Q 005727 240 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (680)
Q Consensus 240 p~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~ 319 (680)
|.++.-++|+.+.+|+.+.+....+..... ...+.+.+.+.+.+.+|.+|+.++.|++.+.+..+-. + .
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~ 203 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--L 203 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--G
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--c
Confidence 999999999999999999998876666532 3568899999999999999999999999999987554 3 3
Q ss_pred HHH---HHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 320 DIF---DTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 320 ~l~---p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
..+ |.+.+.++|++..||..|+.++..+-
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467 99999999999999999999888765
No 75
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.56 E-value=0.00036 Score=84.72 Aligned_cols=354 Identities=8% Similarity=0.032 Sum_probs=218.2
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhh------ccchhhhHHHHHHHHHHhhcCCC---------hhH-H----HH-
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVV------RGDFIIFFNQIFDALCKLSADSD---------ANV-Q----SA- 92 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~------~~~il~~f~eIfd~L~kL~aD~d---------~~V-r----~g- 92 (680)
+.-++.|-..+|..+=..+.+=-|.++... +....+++..+.+++.+-+.=|+ .++ | ..
T Consensus 346 l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d 425 (1023)
T 4hat_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1023)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGG
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchH
Confidence 345667777888888777777767765432 12233566777777775432221 100 0 00
Q ss_pred HHHHHHHHHHHhhc----cccccHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcC
Q 005727 93 AHLLDRLVKDIVTE----SDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLS 165 (680)
Q Consensus 93 A~~Ldrllkdiv~e----s~~f~L~~fIP~L~e~i~~--~np~vR~~avswI~~L~sip~~~-Li~~Lp~~L~~Lf~lLs 165 (680)
....-+..+|.+.. .+.--+..+++.+.+.+.. .++..|..++-+++.+...+..+ ..+++|.+++.|+++..
T Consensus 426 ~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~ 505 (1023)
T 4hat_C 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV 505 (1023)
T ss_dssp GHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhh
Confidence 00011111121111 1112245577777777764 68999999999999988766654 77999999999999886
Q ss_pred -----CCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc--------c
Q 005727 166 -----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL--------V 232 (680)
Q Consensus 166 -----D~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l--------~ 232 (680)
|+..-||..++-++++..+=+...+. .++++++.|+..+.++++.++..|+..+..+++-++..+ .
T Consensus 506 ~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 45566777888899988776655433 489999999999998899999999999999988766555 5
Q ss_pred cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCC-ChHhHHHH----HHHhc----------CCCcHHHHH
Q 005727 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF-DVGPILSI----ATRQL----------SSEWEATRI 297 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~l-dl~~iL~v----L~~~L----------~~~~~~tR~ 297 (680)
||++.++..+.....+-+++-+..+.++.+.+.+.+.+..... -++.+++. +.+.. .++....++
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l 664 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII 664 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHH
Confidence 8999999999998887666666677777776655543211000 01111211 11111 111112233
Q ss_pred HH-HHHHHHHHhhChhhHhhhhHHHHHHHHHhcCC-----------------CCHHHH------HHHHHHHHHHhh----
Q 005727 298 EA-LHWISTLLNRHRTEVLHFLNDIFDTLLKALSD-----------------PSDEVV------LLVLEVHACIAK---- 349 (680)
Q Consensus 298 aa-L~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD-----------------~s~eV~------~~al~lLa~Is~---- 349 (680)
.. ++-+..++...+..+.|++..++|.+++...- ..+.|| +..++++..+.+
T Consensus 665 ~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~ 744 (1023)
T 4hat_C 665 ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN 744 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33 34555667777788889999999877754221 122222 123344444432
Q ss_pred ----ccchHHHHHHHHHHhhccc------chhHHhHHHHHHHHHHhhcCh
Q 005727 350 ----DLQHFRQLVVFLVHNFRVD------NSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 350 ----~~~~F~~fm~~LL~lf~~d------~~lLe~rg~~IIrqLc~~L~~ 389 (680)
...+..+++..++.-+.++ ...|. -++.|+.++.....+
T Consensus 745 ~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~-l~s~iv~~~~~~~~~ 793 (1023)
T 4hat_C 745 LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLN-CMTTVVEKVGHMIPQ 793 (1023)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHH-HHHHHHHHHGGGCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHH-HHHHHHHHHHHhhhh
Confidence 1234566667777766554 23343 467788888766544
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.54 E-value=1.5e-05 Score=91.04 Aligned_cols=312 Identities=14% Similarity=0.092 Sum_probs=199.0
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHh----hccchhhhHHHHHHHHHHhhcC-CChhHHHHH-HHHHHHHHHHhh
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKV----VRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv----~~~~il~~f~eIfd~L~kL~aD-~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
..+|+++..|..++..||..|+.+|.|++.. .+..+.. ...++.|.+++.+ ++..+++.| .+|-.+.. ..
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~ 165 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN--CDGVPALVRLLRKARDMDLTEVITGTLWNLSS--HD 165 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH--TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SG
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cc
Confidence 4679999999999999999999999999752 1222221 1356777777764 567776666 56665532 11
Q ss_pred ccccccHhhhHHHHHHHh------------------cCCCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcC
Q 005727 106 ESDQFSIEEFIPLLRERM------------------NVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLS 165 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i------------------~~~np~vR~~avswI~~L~sip~~--~Li~~Lp~~L~~Lf~lLs 165 (680)
+....-+..-+|.|.+.+ ...++.++..+..+|.+|....+. ..+.-.+.+.+.|..++.
T Consensus 166 ~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 166 SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 100000122356665544 123689999999999999886532 222222344445554443
Q ss_pred ------CCChhHHHHHHHHHHHHHHHh----hc-------------------CCCCC---hHHHHHHHHHhcC-CCCHHH
Q 005727 166 ------DSSHEIRQQADSALWEFLQEI----KN-------------------SPSVD---YGRMAEILVQRAA-SPDEFT 212 (680)
Q Consensus 166 ------D~~~dVR~~a~~~L~~fL~ei----~~-------------------~~~~d---~~~II~iLl~~~~-s~d~~i 212 (680)
+++..+.+.|..+|..+.... .. ...+. -...++.++..++ +.++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 344455554555555443221 10 00011 1356777777775 457889
Q ss_pred HHHHHHHHHHHHHhcC---cccccch--HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHh
Q 005727 213 RLTAITWINEFVKLGG---DQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (680)
Q Consensus 213 rl~Al~WL~e~~~l~~---~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~ 287 (680)
+..|+..|..++.-.+ ..+...+ ...+|.|...|...+++++..|..+...+..-... ...+ -...++.|.+.
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~~I-~~g~ip~LV~L 403 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELI-GKHAIPNLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-HHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-HHHH-HhCCHHHHHHH
Confidence 9989888887764211 1111112 35689999999999999999988887755332110 0011 14567888888
Q ss_pred cCCC--------cHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh
Q 005727 288 LSSE--------WEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDP--SDEVVLLVLEVHACIAK 349 (680)
Q Consensus 288 L~~~--------~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~--s~eV~~~al~lLa~Is~ 349 (680)
|.+. +.+++.+|+..|+.+..+.++...... .+.+|.|+..|.+. ++.+++.|.++|+.+..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 8765 467888999999999988877655443 36899999999886 89999999999998884
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.50 E-value=3.7e-06 Score=93.42 Aligned_cols=253 Identities=15% Similarity=0.056 Sum_probs=158.4
Q ss_pred HHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhcC----------C-CChhHHHHHHHHHHHHHHHhhcC-CCC-ChHHH
Q 005727 133 FLVGWITVLDSVPD--IDMLGFLPDFLDGLFNMLS----------D-SSHEIRQQADSALWEFLQEIKNS-PSV-DYGRM 197 (680)
Q Consensus 133 ~avswI~~L~sip~--~~Li~~Lp~~L~~Lf~lLs----------D-~~~dVR~~a~~~L~~fL~ei~~~-~~~-d~~~I 197 (680)
.|+..|.++..-+. ..+.. -..++.|.+++. | .+++++..|..+|..+...-... ..+ .....
T Consensus 167 qAv~aL~nls~~~e~R~~i~~--~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNE--LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHH--TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH--CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 77888887743321 11221 135566666662 2 34678888888888876321100 011 23567
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhh-cCCchhHHHHHHHHHHHHHHhccCCCCC
Q 005727 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADG 274 (680)
Q Consensus 198 I~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pf--Lp~LLp~LL~~L-sds~~eIR~~A~~~n~~Ll~~v~~~~~~ 274 (680)
||.|+..+.+++++++..|+..|..+..-....-... -...+|.++..| ...++++++.|..+...+-....+....
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999988877643211111111 135677778764 4457778877766655433211000000
Q ss_pred CC-hHhHHHHHHHhcCCCcH----HHHHHHHHHHHHHHh---hChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 275 FD-VGPILSIATRQLSSEWE----ATRIEALHWISTLLN---RHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHA 345 (680)
Q Consensus 275 ld-l~~iL~vL~~~L~~~~~----~tR~aaL~WL~~L~~---~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa 345 (680)
+- -...++.|.+.+.+... .++..|...|..+.. ..++...... .+.+|.|+..|.+.+++++..++|+|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 00 14578888888875432 367777777777775 5665443332 368999999999999999999999999
Q ss_pred HHhh-cc---chHHH--HHHHHHHhhcccchhHHhHHHHHHHHHHhhc
Q 005727 346 CIAK-DL---QHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 346 ~Is~-~~---~~F~~--fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L 387 (680)
.++. +. ..+.+ .++.|.+++.+...-..+.+...+++|+..-
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9993 22 22322 5777888886655545556677888888764
No 78
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.48 E-value=7e-06 Score=84.67 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=143.6
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc---
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD--- 108 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~--- 108 (680)
+-+.+...+.++|.+-|..|++.|.........+.....+-+|.-+.--+.|++.+|-..+ +.|..++.-+.....
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4467788888899999999999998765433333333333333333322358899888888 777777665544321
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
..-...|+|.|.+++++.+..+|..+-+.+..+..+.+. ..+++.+..-+..-|.-+|.++...+..++...+.
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 233578999999999999999999999999888764331 12445555566677899999999998888887654
Q ss_pred CCCCChHHHH---HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHh
Q 005727 189 SPSVDYGRMA---EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYAD 237 (680)
Q Consensus 189 ~~~~d~~~II---~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~ 237 (680)
. ....+ +.+...+.++|..||..|+.-+.++-...|+.+..++++
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 3 34567 889999999999999999999999888888888777655
No 79
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.45 E-value=3.4e-06 Score=88.43 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=128.7
Q ss_pred hhHHHHhh-ccCCCCHHHHHHHHHHHHHHHHh---hccchhhhHHHHHHHHHHhhc-CCChhHHHHH-HHHHHHHHHHhh
Q 005727 32 QIVPPVLN-SFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 32 ~Iv~~VL~-~l~D~d~rVR~~A~eaL~nI~kv---~~~~il~~f~eIfd~L~kL~a-D~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
..+|+++. .+.++++.||..|+.+|.|++.. ++..+.. ...++.|.+++. +++..||..| .+|..++..-..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 46788999 99999999999999999999743 1222221 146777887776 5678888877 888887642211
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
....|.-...+|.|...+.+.++.+|.-++..|..+....+. ....+ ...++.|+.+|..++++||+.|..+|..++
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 111222234689999999999999999999999998765432 22222 258889999999999999999999999887
Q ss_pred HHhhc------CCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHH
Q 005727 184 QEIKN------SPSVDYGRMAEILVQRAASPD--EFTRLTAITWINE 222 (680)
Q Consensus 184 ~ei~~------~~~~d~~~II~iLl~~~~s~d--~~irl~Al~WL~e 222 (680)
+.-.. .....+..+++--+..++..+ +++...|...+..
T Consensus 238 ~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 238 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp TTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 64211 011234555555556666443 4555556555543
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.44 E-value=2.4e-05 Score=75.73 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=156.7
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhc
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKLG 227 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d--~~irl~Al~WL~e~~~l~ 227 (680)
..|=-+|++.++.+|.|.-=.|++-|...+....++.+. -+++++.-|+..++..+ +.+ ...-..++.+..+-
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e----l~epl~~kL~vm~~ksEaIplt-qeIa~a~G~la~i~ 101 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED----LYEPMLKKLFSLLKKSEAIPLT-QEIAKAFGQMAKEK 101 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhcccCchH-HHHHHHHhHHHHhC
Confidence 556678999999999998888999887776666554422 25667776666655443 222 23344677777777
Q ss_pred CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005727 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~ 307 (680)
|+. +..++|.++.+..-.++.+|---..+.++.++.-.+ -++.++.-+...+.+.+...|.+||+++++++
T Consensus 102 Pe~----v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-----l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 102 PEL----VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-----LMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHH----HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHH----HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 755 567889999998888898886655666666554210 12445556667778889999999999999999
Q ss_pred hhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhH
Q 005727 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (680)
Q Consensus 308 ~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~r 375 (680)
+..+.-+.|++|.+ ...|.|.+.-||..+.++|..++.-.+-|++++..-++.|.+...++...
T Consensus 173 en~~~yv~PfLprL----~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 173 ENSFKYVNPFLPRI----INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp TTTHHHHGGGHHHH----HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred ccCccccCcchHHH----HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999987665 56678888889999999999999766669999999999999988877764
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.44 E-value=4.7e-06 Score=89.52 Aligned_cols=223 Identities=11% Similarity=0.044 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH--hhcCCCCChHHHHHHHH
Q 005727 127 NPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEILV 202 (680)
Q Consensus 127 np~vR~~avswI~~L~sip~~--~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e--i~~~~~~d~~~II~iLl 202 (680)
++.+|..+...|.++....+. ..+.-....++.|.++|..++++|+..|+.+|..+... -.....+--...|+.|+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 578999999999999865542 22223466788999999999999999999999887531 00000000124577777
Q ss_pred Hh-cCCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCch----hHHHHHHHHHHHHHHhccCCCCC-
Q 005727 203 QR-AASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG- 274 (680)
Q Consensus 203 ~~-~~s~d~~irl~Al~WL~e~~~l~~~~l~pf--Lp~LLp~LL~~Lsds~~----eIR~~A~~~n~~Ll~~v~~~~~~- 274 (680)
.. ..++++.++..|+..+..+....++.=... -...+|.+...+.+..+ ++++.|..+...+-..+....+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 76 356788888888887777765332211112 25678888888876543 47776666555443321111000
Q ss_pred ---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005727 275 ---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (680)
Q Consensus 275 ---ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~ 350 (680)
.+ ...++.|.+.|.+.+..++..|...|..+..+.++...... .+.+|.|+..|.+.++.++..++++|..++.+
T Consensus 257 ~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 257 QILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHT-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 01 24688899999998999999999999999877776544433 36899999999999999999999999999953
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.40 E-value=0.00022 Score=83.32 Aligned_cols=335 Identities=15% Similarity=0.163 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH-----HHHHhhccccccHhhhHHHH
Q 005727 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL-----VKDIVTESDQFSIEEFIPLL 119 (680)
Q Consensus 46 ~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl-----lkdiv~es~~f~L~~fIP~L 119 (680)
..+|..|+..|-.+.+..+.. -.-..++.+.+.+.+.+++...+..| ++|.-+ +|+.+.+. ..+++.|
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~-~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-----~~~L~~L 381 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLT-CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-----ESFTEIL 381 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCT-TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCC-cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-----HHHHHHH
Confidence 477887776664443322211 12356788888888887766556666 877654 34433332 2367888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHhhcCCchh---------hh--------------------hchH----------HHHHH
Q 005727 120 RERMNV-LNPYVRQFLVGWITVLDSVPDID---------ML--------------------GFLP----------DFLDG 159 (680)
Q Consensus 120 ~e~i~~-~np~vR~~avswI~~L~sip~~~---------Li--------------------~~Lp----------~~L~~ 159 (680)
.+.+.. .++.+-+.+++.+.++..-++.. +. .++. ..++.
T Consensus 382 v~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~ 461 (778)
T 3opb_A 382 LTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISF 461 (778)
T ss_dssp HHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHH
Confidence 888874 77788999999999987643310 00 0111 24566
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHh-cCcccc-cc
Q 005727 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF---TRLTAITWINEFVKL-GGDQLV-PY 234 (680)
Q Consensus 160 Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~---irl~Al~WL~e~~~l-~~~~l~-pf 234 (680)
|..++..+++++|..+..+|..+...-+....+-=++.++.|+..+.+..+. .|..|...|..+.-. .|.... .|
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~ 541 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY 541 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC
Confidence 7788888999999999999888853211100000145667777777766543 788888888887632 222221 12
Q ss_pred h-HhHHHHHhhhhcC-Cchh------------H-HHHHHHHHHHHHHhccCCCCCC--C-h--HhHHHHHHHhcCCCcHH
Q 005727 235 Y-ADILGAILPCISD-KEEK------------I-RVVARETNEELRAIKADPADGF--D-V--GPILSIATRQLSSEWEA 294 (680)
Q Consensus 235 L-p~LLp~LL~~Lsd-s~~e------------I-R~~A~~~n~~Ll~~v~~~~~~l--d-l--~~iL~vL~~~L~~~~~~ 294 (680)
- ...+|.++..|.. ++.. + +-.|..+...+...-.+.++.. . + ...++.|.+.+.+++..
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~ 621 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence 1 2778888887772 2110 1 2233333332222110000000 0 1 24788999999999999
Q ss_pred HHHHHHHHHHHHHhhChhhHh-hhh----HH---HHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch-----H--HHHHH
Q 005727 295 TRIEALHWISTLLNRHRTEVL-HFL----ND---IFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH-----F--RQLVV 359 (680)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~~~-~~l----~~---l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~-----F--~~fm~ 359 (680)
+|.+|...+..+.. +|+++. .+. +. -++.|+..+..++++++..|.|+|+.+++..+. + ...+.
T Consensus 622 VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~ 700 (778)
T 3opb_A 622 LQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIE 700 (778)
T ss_dssp HHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHH
Confidence 99999999999996 666542 332 22 388899999888999999999999998632211 1 35777
Q ss_pred HHHHhhcc--cchhHHhHHHHHHHHHHhhc
Q 005727 360 FLVHNFRV--DNSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 360 ~LL~lf~~--d~~lLe~rg~~IIrqLc~~L 387 (680)
.++..+.+ ++.-+..||..++++|....
T Consensus 701 ~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 701 NAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 77888877 77777889999999999743
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.40 E-value=1.6e-06 Score=93.24 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=146.4
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccc
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
.+-..|++++..+|...|+..-..+.+.++. .++.+ -+...|.|=+.|+++-+|..| ..|.++.. + -
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~---~ 135 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI----IVTSSLTKDMTGKEDSYRGPAVRALCQITD----S---T 135 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----T---T
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----H---H
Confidence 4457789999999999999988888777765 33332 245556677899999999888 65555422 1 1
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
=++.+.+.+..++.+.+|+||+.|+-+...+....+.-. ..|++.+-.+++|.++-|.-.|-.+|. ++....
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~~~~~~l~~ll~d~n~~V~~~Al~lL~----ei~~~d 207 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----KRWVNEAQEAASSDNIMVQYHALGLLY----HVRKND 207 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHTTCSSHHHHHHHHHHHH----HHHTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHhcCCCccHHHHHHHHHH----HHHhhc
Confidence 256789999999999999999999988888877665432 356777888999999999865544443 343321
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 191 ~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
...+.++++.+-.. .-.++..+. .||+-+...++++--.--.++++.+.+++.+.++.|--.|.++.-.+...
T Consensus 208 ~~a~~kLv~~l~~~-~l~~~~~q~---~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~--- 280 (355)
T 3tjz_B 208 RLAVSKMISKFTRH-GLKSPFAYC---MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC--- 280 (355)
T ss_dssp HHHHHHHHHHHHSS-CCSCHHHHH---HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHhcC-CCcChHHHH---HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC---
Confidence 11234444433221 112444433 34443333333331112357788888889988888876666654332111
Q ss_pred CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005727 271 PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (680)
Q Consensus 271 ~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~I 347 (680)
..-.+...++.|...+.++...+|..|++-|..+..+.|+.+..+..+ +..+++|++-.+...|+.+|-+-
T Consensus 281 --~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~----ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 281 --SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLD----LENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred --CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHH----HHHHccCCcHhHHHHHHHHhhhc
Confidence 011234445566666767777899999999999999999998876554 56788899988888887776543
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.33 E-value=6.4e-06 Score=88.53 Aligned_cols=226 Identities=14% Similarity=0.049 Sum_probs=153.9
Q ss_pred hHHHHhhccC-----------CCCHHHHHHHHHHHHHHHHhhccchhhh---HHHHHHHHHHhhcCCChhHHHHH-HHHH
Q 005727 33 IVPPVLNSFS-----------DQDSRVRYYACEALYNIAKVVRGDFIIF---FNQIFDALCKLSADSDANVQSAA-HLLD 97 (680)
Q Consensus 33 Iv~~VL~~l~-----------D~d~rVR~~A~eaL~nI~kv~~~~il~~---f~eIfd~L~kL~aD~d~~Vr~gA-~~Ld 97 (680)
.+++++.-+. ..++.+|..|+.+|.|++..-.+ .... -...++.|.+++.+++++|+..| .+|.
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4566666652 13578999999999999642211 1111 13568999999999999999888 7776
Q ss_pred HHHH-------HHhhccccccHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhhhhc--hHHHHHHHHHhcCCC
Q 005727 98 RLVK-------DIVTESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSDS 167 (680)
Q Consensus 98 rllk-------div~es~~f~L~~fIP~L~e~i-~~~np~vR~~avswI~~L~sip~~~Li~~--Lp~~L~~Lf~lLsD~ 167 (680)
.+.. +.+.+.+ -||.|.+.+ ...++.+++.++..+.++....+..=... -...++.|.+++.++
T Consensus 153 nLs~~~~~~~k~~i~~~G------~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVG------SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHTTCCHHHHHHHHHTT------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHhccCCHHHHHHHHHCC------CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 6643 2333333 478887764 56789999999999999987443221111 356788888899776
Q ss_pred Ch----hHHHHHHHHHHHHHHHhhcCCC----CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch--Hh
Q 005727 168 SH----EIRQQADSALWEFLQEIKNSPS----VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--AD 237 (680)
Q Consensus 168 ~~----dVR~~a~~~L~~fL~ei~~~~~----~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL--p~ 237 (680)
++ +|++.|+.+|..+...+-..+. +-=...++.|+..+++++..++..|+..|..+..-.++. ...+ ..
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G 305 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMG 305 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-HHHHHHTT
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHH-HHHHHHCC
Confidence 54 5888888888877542110000 001357899999999999999999999888775322211 2222 35
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 238 ILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 238 LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
.+|.+...+...++++|+.|..+...+..
T Consensus 306 ~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 68899999998899999999888876654
No 85
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.30 E-value=6.2e-05 Score=87.84 Aligned_cols=317 Identities=12% Similarity=0.064 Sum_probs=201.7
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhh--ccchhhhHHHHHHHHHHhhcC-CChhHHHHH-HHHHHHHHHHhh
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV--RGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~--~~~il~~f~eIfd~L~kL~aD-~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
...+.+.+.+.|.+++...|..|.|.|..+.... |.. +..=...++.|.+++.+ .+.++--|| ..|.++.++.-.
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~-L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIM-IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHH-HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHH-HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 3456677888888888777999999987764211 111 11112334555555443 344455555 444443221100
Q ss_pred ------------------------------------c--cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-
Q 005727 106 ------------------------------------E--SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD- 146 (680)
Q Consensus 106 ------------------------------------e--s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~- 146 (680)
+ ....-=...||.|...+.+.++.+|..++..+..+..-+.
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 0 0000012378999999999999999999999999975543
Q ss_pred -hhhhhchHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHhcCC-CC---------
Q 005727 147 -IDMLGFLPDFLDGLFNMLSDSSHE---IRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAAS-PD--------- 209 (680)
Q Consensus 147 -~~Li~~Lp~~L~~Lf~lLsD~~~d---VR~~a~~~L~~fL~ei~~~---~~~d~~~II~iLl~~~~s-~d--------- 209 (680)
..+.. -.-++.|+.++...... +|..|..+|.+++-..... +.......|+.|+.-+.. ++
T Consensus 491 R~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 491 IPQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp HHHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 22332 25577788888776544 8999999999987422100 011122677777777662 21
Q ss_pred ----HHHHHHHHHHHHHHHHhcC---ccccc-ch--HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC-CCCCCh-
Q 005727 210 ----EFTRLTAITWINEFVKLGG---DQLVP-YY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADP-ADGFDV- 277 (680)
Q Consensus 210 ----~~irl~Al~WL~e~~~l~~---~~l~p-fL--p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~-~~~ldl- 277 (680)
..-+..|+..|..++..++ ++... .+ .+.+|.|...|.++++.||..|.++...++..-..- ..-++.
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 1236778888888888763 23322 23 257899999999889999999999888766421100 011111
Q ss_pred -Hh---HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh
Q 005727 278 -GP---ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 278 -~~---iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD--~s~eV~~~al~lLa~Is~ 349 (680)
+. =++.|...+.+++..+|.+|...|.++....|...... .++.+..++..|.| +++++++.++-++..+++
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 22 27889899999999999999977777777776543322 24678888899988 899999998888887773
No 86
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.30 E-value=7.1e-08 Score=88.14 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
...-++.+...+.|+|+.||+.|+.+|.++.. . . ++.|.+++.|+++.||..| ..|.++-
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~-------- 70 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E------A-FEPLLESLSNEDWRIRGAAAWIIGNFQ-------- 70 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS----T------T-HHHHHHGGGCSCHHHHHHHHHHHGGGC--------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h------H-HHHHHHHHcCCCHHHHHHHHHHHHhcC--------
Confidence 44456788999999999999999988765421 1 1 3778888999999999988 5554431
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~ 181 (680)
-+..+|.|.+.+.+.++.||..++..++.+.. ++.++.|.+++.|+++.||..|..+|+.
T Consensus 71 ---~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 71 ---DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 12358888888899999999999999997652 5667888889999999999999887753
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.29 E-value=0.00025 Score=68.76 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=154.4
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-CC-ChhHHHHHHHHHHHHHHHh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DS-DANVQSAAHLLDRLVKDIV 104 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~a-D~-d~~Vr~gA~~Ldrllkdiv 104 (680)
+.|=..++..++..+.|+-+.||+-|...+.+|++-...-+ ..+.+.|.-++. |. -+-.++-|..+..+.+
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~--- 99 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK--- 99 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHH---
Confidence 67888899999999999999999999888888776333332 233344443332 22 2223444444444433
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
... --+...+|.+++-....+|++|-..-..+..+...+| ..+|.+...++.|+++++..=|-+| |+ |+.
T Consensus 100 -i~P-e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~a---Ln-Fi~ 169 (253)
T 2db0_A 100 -EKP-ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTA---LN-FIE 169 (253)
T ss_dssp -HCH-HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHH---HH-HHH
T ss_pred -hCH-HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHH---HH-HHH
Confidence 111 1256689999999999999999998888887776665 3467788888899999997666655 33 666
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 185 ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
.++...--++.+.+|-|..-+.+.|+-||..|++.+..+....+. +-+++...+.-+.|....+.....+..+.+
T Consensus 170 alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 170 AMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 665543336788899999999999999999999999988766543 566777788888898887776666655543
No 88
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.23 E-value=9.5e-06 Score=85.06 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCCCCh------------hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-hcCCCCHHHHHHHHHHH
Q 005727 154 PDFLDGLFNMLSDSSH------------EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ-RAASPDEFTRLTAITWI 220 (680)
Q Consensus 154 p~~L~~Lf~lLsD~~~------------dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~-~~~s~d~~irl~Al~WL 220 (680)
++.++...+.+.|+.+ +-|..|...|..+++.+.+...+.-...++.++. .+.++++.+|..|+..|
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445555556666632 3444454555555543322111111346788999 89999999999999999
Q ss_pred HHHHHhcCc---ccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005727 221 NEFVKLGGD---QLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (680)
Q Consensus 221 ~e~~~l~~~---~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR 296 (680)
+.++.-.+. .++. ...+|.++..+. ++++++|..|..+...+.+--......+.-...++.|...+.+++..+|
T Consensus 107 g~ia~~n~~~~~~vv~--~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLG--LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp HHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHhCCHHHHHHHHH--CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 988754331 1221 256777777777 4578899888877765432100000000012467888888888889999
Q ss_pred HHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005727 297 IEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (680)
Q Consensus 297 ~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~ 350 (680)
..|...|..+..+.++...... .+.+|.|+..|+++++.|+..++++|+.|..+
T Consensus 185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999988765543333 36899999999999999999999999999864
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.21 E-value=0.00044 Score=82.36 Aligned_cols=286 Identities=11% Similarity=0.015 Sum_probs=178.5
Q ss_pred hhHHHHhhccC---CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCC--------hhHHHHH-HHHHHH
Q 005727 32 QIVPPVLNSFS---DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--------ANVQSAA-HLLDRL 99 (680)
Q Consensus 32 ~Iv~~VL~~l~---D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d--------~~Vr~gA-~~Ldrl 99 (680)
..+..+-.++. ..++.+|.-|+.++.-|....+ +++++.|...+.+++ +.+|.|| .+|.-.
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-------~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-------RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-------HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34455555554 6788999999888876643222 235555555554333 6788887 444432
Q ss_pred HHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHh-hcCCchhhhhchHHHHHHHHHh-cCCCChhHHHHHHH
Q 005727 100 VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNM-LSDSSHEIRQQADS 177 (680)
Q Consensus 100 lkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L-~sip~~~Li~~Lp~~L~~Lf~l-LsD~~~dVR~~a~~ 177 (680)
...++. +..++.|...+++.++.+|.++.-.++.+ ......+. +..|++. ..|.+.+||+.+.-
T Consensus 465 ----~~GS~~---eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a-------i~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 ----AMGSAN---IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA-------IHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp ----STTCCC---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH-------HHHHHHHHHHCSCHHHHHHHHH
T ss_pred ----hcCCCC---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH-------HHHHHHHHhccCcHHHHHHHHH
Confidence 111111 23577777778888888998888888855 33333222 2333332 25678899999888
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh-hhcCCchhHHHH
Q 005727 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP-CISDKEEKIRVV 256 (680)
Q Consensus 178 ~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~-~Lsds~~eIR~~ 256 (680)
+|+.+. +++ .-..+.+++.|.. +.++.+|..++..++ +...|..- +..+..+|. +..|.++++|..
T Consensus 531 gLGll~--~g~--~e~~~~li~~L~~---~~dp~vRygaa~alg--lAyaGTGn----~~aIq~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 531 GLALIN--YGR--QELADDLITKMLA---SDESLLRYGGAFTIA--LAYAGTGN----NSAVKRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp HHHHHT--TTC--GGGGHHHHHHHHH---CSCHHHHHHHHHHHH--HHTTTSCC----HHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHhhh--CCC--hHHHHHHHHHHHh---CCCHHHHHHHHHHHH--HHhcCCCC----HHHHHHHHHHhccCCcHHHHHH
Confidence 877542 111 1234555555543 578999998877665 22233221 455554444 445888999998
Q ss_pred HHHHHHHHHHhccCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHH
Q 005727 257 ARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (680)
Q Consensus 257 A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~e 335 (680)
|..+.+.+ .++++ +.++-+..++ .+.++.+|..|...+|.+..+.|. +..+..|-+.+.|+++.
T Consensus 598 AViaLGlI--~~g~~-------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 598 AVIALGFV--LLRDY-------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHHHHHHH--TSSSC-------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHH
T ss_pred HHHHHHhh--ccCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHH
Confidence 87777632 12221 2333333433 467788999999999999887753 56677788888999999
Q ss_pred HHHHHHHHHHHHhh--ccc---hHHHHHHHHHHhhc
Q 005727 336 VVLLVLEVHACIAK--DLQ---HFRQLVVFLVHNFR 366 (680)
Q Consensus 336 V~~~al~lLa~Is~--~~~---~F~~fm~~LL~lf~ 366 (680)
||+.|...|+.|.. ++. ....|...|.+.+.
T Consensus 663 Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 663 VRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 99999999999983 222 45555555555443
No 90
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.16 E-value=0.00095 Score=79.48 Aligned_cols=275 Identities=10% Similarity=0.069 Sum_probs=175.7
Q ss_pred hHHHHhhccCCCC--------HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHH
Q 005727 33 IVPPVLNSFSDQD--------SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (680)
Q Consensus 33 Iv~~VL~~l~D~d--------~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdi 103 (680)
++..+...+.+++ +.+|..||.+|.-+. -|.. =.++++.|...+.|.+..++.+| .+|.-+.
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~---~GS~---~eev~e~L~~~L~dd~~~~~~~AalALGli~--- 500 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA---MGSA---NIEVYEALKEVLYNDSATSGEAAALGMGLCM--- 500 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS---TTCC---CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh---cCCC---CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh---
Confidence 4444555555555 789999998886542 1211 14678888887777777777655 4444331
Q ss_pred hhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
+...+...+..++..+. .+.+..+|++++..|+.+.--.+ ...|.+++.|. .|.++-||..+.-+++--.
T Consensus 501 vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g~~----e~~~~li~~L~---~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYGRQ----ELADDLITKML---ASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp TTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCG----GGGHHHHHHHH---HCSCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCCCh----HHHHHHHHHHH---hCCCHHHHHHHHHHHHHHh
Confidence 12222222333444433 46788999999999997643332 23444444332 4789999998876655332
Q ss_pred HHhhcCCCCChHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh-cCCchhHHHHHHHHH
Q 005727 184 QEIKNSPSVDYGRMAEILVQR-AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETN 261 (680)
Q Consensus 184 ~ei~~~~~~d~~~II~iLl~~-~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~L-sds~~eIR~~A~~~n 261 (680)
. ...-...|+.|+.. ..++++.+|..|+..|+. +.++.. +.+|.++..+ .+.++.+|..|.-+.
T Consensus 571 a------GTGn~~aIq~LL~~~~~d~~d~VRraAViaLGl-I~~g~~-------e~v~rlv~~L~~~~d~~VR~gAalAL 636 (963)
T 4ady_A 571 A------GTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGF-VLLRDY-------TTVPRIVQLLSKSHNAHVRCGTAFAL 636 (963)
T ss_dssp T------TSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTSSSC-------SSHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred c------CCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHh-hccCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 11123344433333 346778899999888874 333332 3445555544 467899999998888
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCC--HHHHHH
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS--DEVVLL 339 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s--~eV~~~ 339 (680)
+.+ ...+ ....+++.|.....|++..+|.+|+..|+.+..+..+...|.+.++.-.|.+...|+. +..+-.
T Consensus 637 Gli---~aGn----~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 637 GIA---CAGK----GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp HHH---TSSS----CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHh---ccCC----CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHH
Confidence 732 2211 1378899999999999999999999999999999999888888888888888887743 444444
Q ss_pred HHHHHHHH
Q 005727 340 VLEVHACI 347 (680)
Q Consensus 340 al~lLa~I 347 (680)
+.-..+-+
T Consensus 710 a~iAqGll 717 (963)
T 4ady_A 710 ACVAQGIM 717 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 91
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.13 E-value=9.1e-07 Score=90.36 Aligned_cols=185 Identities=22% Similarity=0.147 Sum_probs=128.6
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHH
Q 005727 39 NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPL 118 (680)
Q Consensus 39 ~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~ 118 (680)
..++|+++.||..|+..+ . ...|.+++.|+++.||..|.. ++ + .+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~----------~~~l~~L~~D~~~~VR~~aA~--~L--------~-------~~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P----------VEALTPLIRDSDEVVRRAVAY--RL--------P-------REQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C----------GGGGGGGTTCSSHHHHHHHHT--TS--------C-------SGG
T ss_pred HHhcCCCHHHHHHHHHhC-------C----------HHHHHHHccCcCHHHHHHHHH--HC--------C-------HHH
Confidence 445999999999998743 1 123667899999999998821 11 1 134
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 005727 119 LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMA 198 (680)
Q Consensus 119 L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II 198 (680)
|...+.++++.||..+...+ +. +.|..+++|++++||.++... +. .
T Consensus 103 L~~ll~D~d~~VR~~aA~~l------~~-----------~~L~~L~~D~d~~VR~~aA~~-------l~----------~ 148 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL------PL-----------EQLEQMAADRDYLVRAYVVQR-------IP----------P 148 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS------CT-----------GGGGGGTTCSSHHHHHHHHHH-------SC----------G
T ss_pred HHHHHcCCCHHHHHHHHHhC------CH-----------HHHHHHHcCCCHHHHHHHHHh-------cC----------H
Confidence 56667899999999988842 21 135567899999999987652 11 1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChH
Q 005727 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG 278 (680)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~ 278 (680)
+.+....+++++.||..+... +++ +.+...+.|++.+||..+.... .
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~------l~~-----------~ll~~ll~D~d~~VR~aaa~~l-------~--------- 195 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKR------LPE-----------ESLGLMTQDPEPEVRRIVASRL-------R--------- 195 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH------SCG-----------GGGGGSTTCSSHHHHHHHHHHC-------C---------
T ss_pred HHHHHHHcCCCHHHHHHHHHc------CCH-----------HHHHHHHcCCCHHHHHHHHHhC-------C---------
Confidence 234456778999999988764 111 2334567899999998876531 1
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005727 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (680)
Q Consensus 279 ~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lL 344 (680)
.+.|...+.++.|.+|.++..-++ .+ ++..|.|++..||..+.+.|
T Consensus 196 --~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~-~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 --GDDLLELLHDPDWTVRLAAVEHAS-----------------LE-ALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp --GGGGGGGGGCSSHHHHHHHHHHSC-----------------HH-HHHHCCCCCHHHHHHHHCCC
T ss_pred --HHHHHHHHcCCCHHHHHHHHHcCC-----------------HH-HHHHccCCCHHHHHHHHHHh
Confidence 134555688999999999998754 13 44556999999999876543
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=0.00045 Score=69.42 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=161.4
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
.+..++.-+.|.|+.|+.-|..++.++.|.+.+ .-.....+++|.+.++.-+.|..|.--| .+|..++++..-..+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~-- 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK-- 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH--
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH--
Confidence 455667778999999999999999988876533 2235678999999999999988877666 778887776554333
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
+..+++..+..-+..+|+-.+..+.+.++.+ + .....|.+..-++.++.-.+++|+.++-.++-... ....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia---~~S~ 182 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML---NSSA 182 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh---cccC
Confidence 3577888999999999999999999999987 2 24457888999999997788999988755543332 2222
Q ss_pred CC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhc--CCchhHHHHHHHHHHHH
Q 005727 191 SV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEEL 264 (680)
Q Consensus 191 ~~-d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~-~~~l~pfLp~LLp~LL~~Ls--ds~~eIR~~A~~~n~~L 264 (680)
+. .+..++.-+-.-+++.|++++..|+..+.++...+ ++...+-+-+++.+ .++++ +..|.+|.-|..+.+.+
T Consensus 183 D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 183 DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRI-VDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHH-HHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHH-HHHHHHhcCChhHHHHHHHHHHHH
Confidence 22 35666666666778889999999999888876553 33444444444444 34566 56799999998876543
No 93
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.10 E-value=0.0014 Score=79.77 Aligned_cols=348 Identities=12% Similarity=0.167 Sum_probs=189.3
Q ss_pred HhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch--------hhhHHHHHHHHHHhhcCCChh
Q 005727 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--------IIFFNQIFDALCKLSADSDAN 88 (680)
Q Consensus 17 ~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i--------l~~f~eIfd~L~kL~aD~d~~ 88 (680)
+.|.+.+..-.+|++.++..++..+.|+++.|+.+||.++..|+..|+... .+|.++|+..+.....+-++.
T Consensus 551 grY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~ 630 (1073)
T 3gjx_A 551 GQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQ 630 (1073)
T ss_dssp HHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHH
T ss_pred hhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHH
Confidence 444455555678899999999999999999999999999999999988643 357888888888777665542
Q ss_pred -HHHHHHHHHHHHHHHhhcc-ccccHhhhHHHHHHHhcC------------CCHHHHHHHHHHHH---HhhcCCchhhhh
Q 005727 89 -VQSAAHLLDRLVKDIVTES-DQFSIEEFIPLLRERMNV------------LNPYVRQFLVGWIT---VLDSVPDIDMLG 151 (680)
Q Consensus 89 -Vr~gA~~Ldrllkdiv~es-~~f~L~~fIP~L~e~i~~------------~np~vR~~avswI~---~L~sip~~~Li~ 151 (680)
+..--++++.++.....+. ...-+..++|+..+.... .|+.+-.-+...+. .+++.-+..+.+
T Consensus 631 ~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~ 710 (1073)
T 3gjx_A 631 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVI 710 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHH
Confidence 2221144444433222221 122355666666665432 13332222333333 233333444555
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc--
Q 005727 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-- 229 (680)
Q Consensus 152 ~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~-- 229 (680)
++..+.+.+++ +=+...+.+...+..-+. ...+ ...+..++ .+|.+.+.-+..++.-+++
T Consensus 711 ~~~~i~~~~l~--------~y~~~s~~i~~~v~~~g~----~~~~--~~~~~~~r----~ik~eil~l~~~~i~~~~~~~ 772 (1073)
T 3gjx_A 711 QLGRIYLDMLN--------VYKCLSENISAAIQANGE----MVTK--QPLIRSMR----TVKRETLKLISGWVSRSNDPQ 772 (1073)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHHHHHCG----GGGS--SHHHHHHH----HHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHhCCc----hhhc--cHHHHHHH----HHHHHHHHHHHHHHhcCCCHH
Confidence 55555554442 111112222222111000 0000 01111111 2455555666555544432
Q ss_pred -ccccchHhHHHHHhhhhcCC-----chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHH----HhcC---CCcHHHH
Q 005727 230 -QLVPYYADILGAILPCISDK-----EEKIRVVARETNEELRAIKADPADGFDVGPILSIAT----RQLS---SEWEATR 296 (680)
Q Consensus 230 -~l~pfLp~LLp~LL~~Lsds-----~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~----~~L~---~~~~~tR 296 (680)
..-.++|.++..++.--..+ ++++=......-.++-..+. -+++.|++.+- +.+. .+.+++|
T Consensus 773 ~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~-----~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r 847 (1073)
T 3gjx_A 773 MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHIT-----AEIPQIFDAVFECTLNMINKDFEEYPEHR 847 (1073)
T ss_dssp HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHhCCcccCcHHH
Confidence 13456677777776643333 34433333322222222221 12344444321 2222 4678899
Q ss_pred HHHHHHHHHHHhhChhhHhhh----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hc--------cchHHHHHHH
Q 005727 297 IEALHWISTLLNRHRTEVLHF----LNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KD--------LQHFRQLVVF 360 (680)
Q Consensus 297 ~aaL~WL~~L~~~~p~~~~~~----l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is----~~--------~~~F~~fm~~ 360 (680)
..=.+.+..+..+|+..+... +..++..++=.++++..+|-..++..+..+- ++ ..||-.++..
T Consensus 848 ~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~ 927 (1073)
T 3gjx_A 848 TNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQH 927 (1073)
T ss_dssp HHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764 4457777788889999998888887665543 21 2345555555
Q ss_pred HHHhhccc-chhHHhHHHHHHHHHHhhc
Q 005727 361 LVHNFRVD-NSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 361 LL~lf~~d-~~lLe~rg~~IIrqLc~~L 387 (680)
++..+-+. .+-.=+.-..|+++|....
T Consensus 928 i~~v~td~~h~~~f~~q~~il~~l~~~~ 955 (1073)
T 3gjx_A 928 IFSVVTDTSHTAGLTMHASILAYMFNLV 955 (1073)
T ss_dssp HHHHHTCTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHhhhhhHHHHHHHHHHHHH
Confidence 55555332 2211123355777776653
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.02 E-value=5.2e-05 Score=84.28 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=165.9
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc--c---hhhhHHHHHHHHHHh--------hcCC-ChhHHHHH-HHHH
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--D---FIIFFNQIFDALCKL--------SADS-DANVQSAA-HLLD 97 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~--~---il~~f~eIfd~L~kL--------~aD~-d~~Vr~gA-~~Ld 97 (680)
+-..+..-+-|+.+.+|.-|+.+|-.|.+.... + .... +-...-+|-+ ++|. -+-||+.| +.|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 667788889999999999999999999877531 1 1112 1122223322 4554 35799988 8888
Q ss_pred HHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHH
Q 005727 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS 177 (680)
Q Consensus 98 rllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~ 177 (680)
.+ +-+..+ + ..+-.+........+++|...+--+..+ .+++.-+|.+++.+..-|.|++.|||..|++
T Consensus 254 aL-~hLp~e---~---~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 254 RI-YPLIGP---N---DIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HH-TTTSCS---C---CHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH-HhCChh---H---HHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 87 422222 2 2233333455778899999988888877 4444449999999999999999999999888
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHH
Q 005727 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR--LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (680)
Q Consensus 178 ~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~ir--l~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~ 255 (680)
+|--+. ....++.+++++..++.+.|+... -..+..+..++..+...- -.|.++|.+.|.+.++-.+||.
T Consensus 322 tLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 322 LLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGTCSSHHHHH
T ss_pred Hhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhcCCcHHHHH
Confidence 866554 123589999999999887765322 234556777777665321 1369999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCChHhHHHHHHHh-cCCCcHHHHHHHHHHH
Q 005727 256 VARETNEELRAIKADPADGFDVGPILSIATRQ-LSSEWEATRIEALHWI 303 (680)
Q Consensus 256 ~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~-L~~~~~~tR~aaL~WL 303 (680)
++.++...++ .+.++..+-+. +-.++++++..+++.+
T Consensus 394 AVL~TL~tfL-----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 394 SILNMVKNLS-----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHTTTCC-----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 8887765322 35566644444 4567788888888644
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.87 E-value=7.3e-06 Score=74.60 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005727 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (680)
Q Consensus 72 ~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li 150 (680)
+.-.+.|.+++.|+++.||..| ..|.++ +.. . +|.|.+.+.++++.+|..++..++.+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~--------~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRM--------GDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSC--------SST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHh--------Cch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3445667778899999999888 444322 111 1 5899999999999999999999887642
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWIN 221 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~ 221 (680)
+..++.|.+++.|+++.||..|..+|+.+- -+..++.|+..++++++.+|..|...++
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456777888889999999999999988663 1457888888889999999999988765
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.82 E-value=0.0027 Score=63.83 Aligned_cols=220 Identities=18% Similarity=0.084 Sum_probs=162.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d 193 (680)
-+-.|.+.+++.|+.++.-++..+..+.+-. +.-=...+.+++|.+.+++.+.+..|---|.+||+.++..++-. .-+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HHH
Confidence 4667778889999999999999999887754 43335678899999999999999999988899999998755321 226
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC
Q 005727 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (680)
Q Consensus 194 ~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~ 273 (680)
|..+++.|..-..++++-.+..|.+-++.+ ......|+++..+...+...+++++.+|-.+.-+ +...+++
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~e---ia~~S~D 183 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLN---MLNSSAD 183 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH---HGGGCSS
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHH---hhcccCC
Confidence 899999999999999999999988877754 3455679999999999987899999888776553 3333333
Q ss_pred CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Q 005727 274 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHA 345 (680)
Q Consensus 274 ~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~~~~~l~~l~p~LL~~Ls--D~s~eV~~~al~lLa 345 (680)
.-.+..++.-+...+.++++..+.-||..+-.+... -++.+.+-+-.+. ...+.|. ...|.++.+|--+-.
T Consensus 184 ~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 184 SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKIS-RIVDGLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHH-HHHHHGGGCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHH-HHHHHHHHhcCChhHHHHHHHHHH
Confidence 334678888889999999999999999988776665 2222322222222 2334444 346777776654433
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.78 E-value=0.00019 Score=79.96 Aligned_cols=232 Identities=12% Similarity=0.101 Sum_probs=159.1
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch-----hhhhchHHHHHHHHHh--------cCC-CChhHHH
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-----DMLGFLPDFLDGLFNM--------LSD-SSHEIRQ 173 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~-----~Li~~Lp~~L~~Lf~l--------LsD-~~~dVR~ 173 (680)
+..+.+ |...|..-+-+++|++|-.|.-.+..+.+..+. +-... +-..+-++-+ .+| ...-||+
T Consensus 169 ~eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRE 246 (800)
T 3oc3_A 169 IENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRD 246 (800)
T ss_dssp CCSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHH
T ss_pred CCCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHH
Confidence 356677 999999999999999999999888877654431 11111 2233333322 333 2356999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhH
Q 005727 174 QADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (680)
Q Consensus 174 ~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eI 253 (680)
.|+++|+.+ .-+.. + -.++..|+..+..+++++|..++--|+-+ .+++.-+|.+++.++.+|.|.+++|
T Consensus 247 TaAQtLGaL-~hLp~----e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDV 315 (800)
T 3oc3_A 247 AAAYLLSRI-YPLIG----P-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDI 315 (800)
T ss_dssp HHHHHHHHH-TTTSC----S-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHH-HhCCh----h-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHH
Confidence 999999987 43322 2 36677777777888999999887777755 3333338999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCC
Q 005727 254 RVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (680)
Q Consensus 254 R~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD 331 (680)
|.+|.++.- ..+ ..-.++.+++++-..|. ++-...--+.++.|..+...-+. ....+.++|.|.+.|.+
T Consensus 316 RAVAAetLi---PIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLC---HFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHT---TSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhh---hhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcC
Confidence 999888764 222 11236777776666554 33333455566677776665542 12234899999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 005727 332 PSDEVVLLVLEVHACIAKDLQHFRQLVVFLV 362 (680)
Q Consensus 332 ~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL 362 (680)
+...||..+++++..+. +...++-+.++++
T Consensus 387 tITSVR~AVL~TL~tfL-~~~~LRLIFQNIL 416 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS-EESIDFLVAEVVL 416 (800)
T ss_dssp SSHHHHHHHHHHTTTCC-CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 99999999999988777 4455555555553
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.74 E-value=3.3e-05 Score=82.88 Aligned_cols=212 Identities=15% Similarity=0.131 Sum_probs=103.5
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
+..++.+.+++-+++.|+++-||++|+-+.+.+.....+-+..+ ++.+-.++.|.++.|.-.| .+|..+.
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~----~~~l~~ll~d~n~~V~~~Al~lL~ei~----- 204 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW----VNEAQEAASSDNIMVQYHALGLLYHVR----- 204 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT----HHHHHHHTTCSSHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH----HHHHHHHhcCCCccHHHHHHHHHHHHH-----
Confidence 56678888999999999999999999999887765444333233 4455566789999998777 3333332
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
+.+.-++.++++.+.+. ...+|...-. +|..+....+.+--..-..+.+.|..+|...++.|--+|..++-.+-.
T Consensus 205 ~~d~~a~~kLv~~l~~~-~l~~~~~q~~---llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~- 279 (355)
T 3tjz_B 205 KNDRLAVSKMISKFTRH-GLKSPFAYCM---MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG- 279 (355)
T ss_dssp TTCHHHHHHHHHHHHSS-CCSCHHHHHH---HHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred hhchHHHHHHHHHHhcC-CCcChHHHHH---HHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-
Confidence 22333566677766542 2235554443 444443433322112234566777778888899999888777665422
Q ss_pred hhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHH
Q 005727 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE 259 (680)
Q Consensus 186 i~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~ 259 (680)
. +...+...++++...+.++++++|..|+.-|..++...|..+. +.-.-|..++.|++..|+..|..
T Consensus 280 ~---~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~----~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 280 C---SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT----ACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred C---CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH----HHHHHHHHHccCCcHhHHHHHHH
Confidence 1 1224456677777778889999999999999888887776643 45566778899999888766543
No 99
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.62 E-value=1.5e-05 Score=81.37 Aligned_cols=164 Identities=21% Similarity=0.271 Sum_probs=112.7
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhH
Q 005727 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFI 116 (680)
Q Consensus 37 VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fI 116 (680)
+...+.|+|+.||+.|+..+ .. +.|.+++.|+|+.||.++.. ++ . .
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-------~~----------~~L~~ll~D~d~~VR~~aA~--~l----~-------~---- 124 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-------PR----------EQLSALMFDEDREVRITVAD--RL----P-------L---- 124 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CS----------GGGGGTTTCSCHHHHHHHHH--HS----C-------T----
T ss_pred HHHHccCcCHHHHHHHHHHC-------CH----------HHHHHHHcCCCHHHHHHHHH--hC----C-------H----
Confidence 45556999999999998643 11 34677899999999998721 21 1 1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHH
Q 005727 117 PLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR 196 (680)
Q Consensus 117 P~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~ 196 (680)
+.+...+.++++.||..+..- .++ +.+..++.|++++||..+... +.
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~~------l~~-----------~~l~~l~~D~d~~VR~~aa~~-------l~--------- 171 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQR------IPP-----------GRLFRFMRDEDRQVRKLVAKR-------LP--------- 171 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHHH------SCG-----------GGGGGTTTCSCHHHHHHHHHH-------SC---------
T ss_pred HHHHHHHcCCCHHHHHHHHHh------cCH-----------HHHHHHHcCCCHHHHHHHHHc-------CC---------
Confidence 123344689999999999872 222 133468899999999987654 11
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 005727 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 276 (680)
Q Consensus 197 II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ld 276 (680)
.+.+.....++++.||..+..-+ +. +.+...+.|++..||..+.+..+
T Consensus 172 -~~ll~~ll~D~d~~VR~aaa~~l------~~-----------~~L~~Ll~D~d~~VR~~aa~~l~-------------- 219 (244)
T 1lrv_A 172 -EESLGLMTQDPEPEVRRIVASRL------RG-----------DDLLELLHDPDWTVRLAAVEHAS-------------- 219 (244)
T ss_dssp -GGGGGGSTTCSSHHHHHHHHHHC------CG-----------GGGGGGGGCSSHHHHHHHHHHSC--------------
T ss_pred -HHHHHHHHcCCCHHHHHHHHHhC------CH-----------HHHHHHHcCCCHHHHHHHHHcCC--------------
Confidence 13444566899999999888642 11 45666789999999988766521
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWIS 304 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~ 304 (680)
.+.|.. |.+++|.+|.++..-|+
T Consensus 220 ----~~~L~~-L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ----LEALRE-LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ----HHHHHH-CCCCCHHHHHHHHCCC-
T ss_pred ----HHHHHH-ccCCCHHHHHHHHHHhC
Confidence 244444 48899999999875443
No 100
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.59 E-value=0.021 Score=70.48 Aligned_cols=325 Identities=10% Similarity=0.065 Sum_probs=177.1
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-----chhhhHH-HHHHHHHHhh--------cCCChhHHHHH-HHHH
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-----DFIIFFN-QIFDALCKLS--------ADSDANVQSAA-HLLD 97 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-----~il~~f~-eIfd~L~kL~--------aD~d~~Vr~gA-~~Ld 97 (680)
+++-++..+.| +.+|.+|+++|..|+..... ..+..+. +-+..+.... .|.|.++.++- +++.
T Consensus 250 ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~ 327 (1204)
T 3a6p_A 250 LLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLC 327 (1204)
T ss_dssp HHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHH
Confidence 55666666664 67899999999998753211 1222331 1122223222 22233333332 4444
Q ss_pred HHHHHHhh---c----cccccHhhhHHHHHHHhcCCCHHHHHHHH-HHHHHhhcC---CchhhhhchHHHHHHH---HHh
Q 005727 98 RLVKDIVT---E----SDQFSIEEFIPLLRERMNVLNPYVRQFLV-GWITVLDSV---PDIDMLGFLPDFLDGL---FNM 163 (680)
Q Consensus 98 rllkdiv~---e----s~~f~L~~fIP~L~e~i~~~np~vR~~av-swI~~L~si---p~~~Li~~Lp~~L~~L---f~l 163 (680)
.+...++. . .....+..+++.+.+++.+++..+-..++ -|...+... ....+.++++.+++.+ ++-
T Consensus 328 ~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k 407 (1204)
T 3a6p_A 328 ALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVK 407 (1204)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 44333332 1 12345789999999999999888888877 455555442 2334667889988888 322
Q ss_pred cCCC-----------------Ch-------hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-----------
Q 005727 164 LSDS-----------------SH-------EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP----------- 208 (680)
Q Consensus 164 LsD~-----------------~~-------dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~----------- 208 (680)
+.-| ++ +-|+.....+....... +..-+..+.+.+...+.+.
T Consensus 408 ~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~---p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 408 MGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD---PKTSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp CCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHTCC-----------
T ss_pred hcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 2111 11 12333333333222211 1112344445554444321
Q ss_pred ------------CH-----HHHHHHHHHHHHHH-HhcCcccccchH-hHHHHHhhhh---cCCchhHHHHHHHHHHHHHH
Q 005727 209 ------------DE-----FTRLTAITWINEFV-KLGGDQLVPYYA-DILGAILPCI---SDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 209 ------------d~-----~irl~Al~WL~e~~-~l~~~~l~pfLp-~LLp~LL~~L---sds~~eIR~~A~~~n~~Ll~ 266 (680)
++ +....+++.+.+-+ .... .++++ .++|.+++.+ ..++|.+|..+..+.+.+..
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e---~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~ 561 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN---REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFP 561 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC---TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc---cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 11 11223344443322 2221 13333 2444444432 34688899888888877666
Q ss_pred hccCCCCCCChHhHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCC-
Q 005727 267 IKADPADGFDVGPILSIATRQLSS------------EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS- 333 (680)
Q Consensus 267 ~v~~~~~~ldl~~iL~vL~~~L~~------------~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s- 333 (680)
.....+ --++.+++.+...+.+ .+..+|.+|...+..+.+.|++.+.||++.+...+-..++...
T Consensus 562 ~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~ 639 (1204)
T 3a6p_A 562 FVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELL 639 (1204)
T ss_dssp GGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTT
T ss_pred HHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccc
Confidence 654321 1246677766655533 2346899999999999999999999999999997776554222
Q ss_pred ----HHHHH-HHHHHHHHHh----hccchHHHHHHHHHHhhcc
Q 005727 334 ----DEVVL-LVLEVHACIA----KDLQHFRQLVVFLVHNFRV 367 (680)
Q Consensus 334 ----~eV~~-~al~lLa~Is----~~~~~F~~fm~~LL~lf~~ 367 (680)
+.+.. .++-+++... ....|++.++..+++...+
T Consensus 640 l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 640 LTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 22221 3333333221 1245688888888877765
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.57 E-value=0.0023 Score=64.42 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH-hhcCCC
Q 005727 8 LFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSD 86 (680)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~k-L~aD~d 86 (680)
||.-|-+.+....+- .-.+++++-.....+|+...||++|+..+... + ...++++.+-. +.+|..
T Consensus 52 gf~~~~~~a~~~~~~-----~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~----~-----~~~~~L~~ir~~va~D~~ 117 (240)
T 3l9t_A 52 GFKEEEQRALTDYKS-----NDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL----S-----KDKEILIFMRDEVSKDNN 117 (240)
T ss_dssp --CHHHHHHHHHHHH-----SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT----T-----TSHHHHHHHHHTGGGCSC
T ss_pred ccHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc----c-----CcHHHHHHHHHHhCCCCC
Confidence 566666665532111 12677888888888999999999999865433 1 22678888887 778999
Q ss_pred hhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC
Q 005727 87 ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS 165 (680)
Q Consensus 87 ~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs 165 (680)
-.||+.+ ..++.+++. ...+..+|.+.+-..++|+.+|.++++-+....+.+. +......+++.|-.+.+
T Consensus 118 WrVre~lA~a~~~~~~~-------~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--~k~dp~~ll~iL~~L~~ 188 (240)
T 3l9t_A 118 WRVQEVLAKAFDEFCKK-------IEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY--FKENPNEAIRRIADLKE 188 (240)
T ss_dssp HHHHHHHHHHHHHHHHH-------HCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT--TTTCHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch--hhcCHHHHHHHHHHhcC
Confidence 9999987 666666541 1233468888899999999999999988765454432 34555667777888999
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 005727 166 DSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 166 D~~~dVR~~a~~~L~~fL~ 184 (680)
|++.=||++....|++.-+
T Consensus 189 D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 189 DVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 9999999999888887754
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.51 E-value=0.00028 Score=85.23 Aligned_cols=318 Identities=14% Similarity=0.120 Sum_probs=178.8
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc---c-hhhhHHHHHHHHHHhhc-CCCh-hHHHHHHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG---D-FIIFFNQIFDALCKLSA-DSDA-NVQSAAHLLDRLV 100 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~---~-il~~f~eIfd~L~kL~a-D~d~-~Vr~gA~~Ldrll 100 (680)
...++.|.+.+-.-..|+|..-..+|+|.+.-+....+. + .-..|+-+.+.|-+.++ +-.+ ++..... .+
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~----~i 578 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWST----LA 578 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHH----HH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH----HH
Confidence 455777778887878899999999999998776544332 2 23567888888888887 4544 3333333 33
Q ss_pred HHHhhccccccHhhhHHHHHHHh---c------CCCHH---HHHH-HHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC
Q 005727 101 KDIVTESDQFSIEEFIPLLRERM---N------VLNPY---VRQF-LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (680)
Q Consensus 101 kdiv~es~~f~L~~fIP~L~e~i---~------~~np~---vR~~-avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~ 167 (680)
.-+....+.. + .+.|.+.+ . +.+++ .|.. +-+.+..+.-..+ ....++..++ ++.+
T Consensus 579 ~~~~~~~Dpr---R-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~-----~~~~~l~~~~--l~h~ 647 (997)
T 1vsy_5 579 WWLPAVVDLR---R-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP-----DVGKLFDELV--FDHP 647 (997)
T ss_dssp HHHHHHSCGG---G-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC-----CCHHHHHHCC--SCCS
T ss_pred HHHhcCCChh---h-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc-----cHHHHHHHHH--hCCC
Confidence 3333333322 2 23333333 1 11111 2222 2233333322111 1345555555 7888
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCC-CCh----------------------HHHHH---HHHHhcC---------CC----
Q 005727 168 SHEIRQQADSALWEFLQEIKNSPS-VDY----------------------GRMAE---ILVQRAA---------SP---- 208 (680)
Q Consensus 168 ~~dVR~~a~~~L~~fL~ei~~~~~-~d~----------------------~~II~---iLl~~~~---------s~---- 208 (680)
...||++..+.|..+...-- .+. .+. +.+++ -+.+.+. .+
T Consensus 648 y~~VRe~Ig~~L~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~ 726 (997)
T 1vsy_5 648 YDQVRQAVAKLLTTLVQNQS-NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFI 726 (997)
T ss_dssp CHHHHHHHHHHHHHHHHTSC-CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTT
T ss_pred hHHHHHHHHHHHHHHHHhhc-ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccc
Confidence 99999988777765543221 110 011 11111 1112221 11
Q ss_pred -CHH--HHHHHHHHHHHHHHhc-CcccccchHh-HHHHHhhhhcCCch-hHHHH-HHHHHHHHHHhccCCCC-CCChHhH
Q 005727 209 -DEF--TRLTAITWINEFVKLG-GDQLVPYYAD-ILGAILPCISDKEE-KIRVV-ARETNEELRAIKADPAD-GFDVGPI 280 (680)
Q Consensus 209 -d~~--irl~Al~WL~e~~~l~-~~~l~pfLp~-LLp~LL~~Lsds~~-eIR~~-A~~~n~~Ll~~v~~~~~-~ldl~~i 280 (680)
+.. ...|++.||.....-+ ...+.||+|. ++|.++.....++. |+... |..+. ..+..... .-..+.+
T Consensus 727 ~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l----~~ls~~~~~~~~~~~~ 802 (997)
T 1vsy_5 727 KTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLY----AGLGYMPIRKNHVAAI 802 (997)
T ss_dssp TSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHH----HHTSSSCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHH----HHHhcCCCCHHHHHHH
Confidence 111 3468889998665433 2347889998 99999888776654 54444 33332 22221111 1123556
Q ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHh-hhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhcc-c--hH
Q 005727 281 LSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL-Q--HF 354 (680)
Q Consensus 281 L~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~-~~l~~l~p~LL~~LsD~s-~eV~~~al~lLa~Is~~~-~--~F 354 (680)
+..+.+... +++| +|.++|..+-.+.-..---+. ..-..++..+++.|.|+. -|||..|-.+|+-+..+. . .-
T Consensus 803 l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~ 881 (997)
T 1vsy_5 803 VDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL 881 (997)
T ss_dssp HHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH
Confidence 677766665 6789 999999987655443111111 112467888999999999 999999999999987554 2 22
Q ss_pred HHHHHHHHHhh
Q 005727 355 RQLVVFLVHNF 365 (680)
Q Consensus 355 ~~fm~~LL~lf 365 (680)
+.++..+-+.+
T Consensus 882 ~~li~~f~~~~ 892 (997)
T 1vsy_5 882 LSLIERFAKGL 892 (997)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.86 E-value=0.011 Score=71.37 Aligned_cols=204 Identities=9% Similarity=0.117 Sum_probs=138.9
Q ss_pred HHHHHHHHHhhcCCc-hhhhhchHH-HHHHHHHhcCCCCh-hHHHH-HHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhc
Q 005727 132 QFLVGWITVLDSVPD-IDMLGFLPD-FLDGLFNMLSDSSH-EIRQQ-ADSALWEFLQEIKNSPSV--DYGRMAEILVQRA 205 (680)
Q Consensus 132 ~~avswI~~L~sip~-~~Li~~Lp~-~L~~Lf~lLsD~~~-dVR~~-a~~~L~~fL~ei~~~~~~--d~~~II~iLl~~~ 205 (680)
..++.|+......+. ..+.+|+|. ++|.|+.+..+.+. |..+. |..+ +..+...+.. .++.++..+....
T Consensus 735 kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~----l~~ls~~~~~~~~~~~~l~~l~~~~ 810 (997)
T 1vsy_5 735 STIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRL----YAGLGYMPIRKNHVAAIVDYVCSSN 810 (997)
T ss_dssp HHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHH----HHHTSSSCCCHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 678899987665543 457888888 88889988877654 44444 3333 3333332221 3566777776655
Q ss_pred C-CCCHHHHHHHHHHHHHHHH--h---cCcccccchHhHHHHHhhhhcCCc-hhHHHHHHHHHHHHHHhccCCCCCCChH
Q 005727 206 A-SPDEFTRLTAITWINEFVK--L---GGDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVG 278 (680)
Q Consensus 206 ~-s~d~~irl~Al~WL~e~~~--l---~~~~l~pfLp~LLp~LL~~Lsds~-~eIR~~A~~~n~~Ll~~v~~~~~~ldl~ 278 (680)
. ++.. +|..++..+..|.- + .... -.+|...++.+|.|+. .|||+.|..+...+++..+. .....
T Consensus 811 ~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~----~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~---~~~~~ 882 (997)
T 1vsy_5 811 VALSSN-QTKLQLAFIQHFLSAELLQLTEEE----KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE---EQPLL 882 (997)
T ss_dssp TTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH----HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS---HHHHH
T ss_pred hcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc---hhhHH
Confidence 5 5678 99999888776653 1 2221 2688999999999999 99999999999877665310 01123
Q ss_pred hHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHhhChhhH--hhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005727 279 PILSIATRQLSS------------EWEATRIEALHWISTLLNRHRTEV--LHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (680)
Q Consensus 279 ~iL~vL~~~L~~------------~~~~tR~aaL~WL~~L~~~~p~~~--~~~l~~l~p~LL~~LsD~s~eV~~~al~lL 344 (680)
.++..+.+.+.. .....|-+|+.-|+++....|.++ =+++|+++..|-+..+|+.+ |...+-.++
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tl 961 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTI 961 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHH
Confidence 344444444422 011478999999999999999998 67899998888778888665 666666788
Q ss_pred HHHh
Q 005727 345 ACIA 348 (680)
Q Consensus 345 a~Is 348 (680)
++.-
T Consensus 962 seFk 965 (997)
T 1vsy_5 962 SEFK 965 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.66 E-value=0.12 Score=51.89 Aligned_cols=140 Identities=11% Similarity=-0.019 Sum_probs=81.3
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHH-hcCcccccchHhH
Q 005727 161 FNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ-RAASPDEFTRLTAITWINEFVK-LGGDQLVPYYADI 238 (680)
Q Consensus 161 f~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~-~~~s~d~~irl~Al~WL~e~~~-l~~~~l~pfLp~L 238 (680)
..+..|+.-+||-.|+.+|+.+ . ..+.+++.+.. -..+....||..+..-+++++. .+++. .
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------~ 140 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------A 140 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------T
T ss_pred HHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------H
Confidence 3344445555665555544433 1 12445555544 3344455555555555555553 34432 4
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh
Q 005727 239 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (680)
Q Consensus 239 Lp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l 318 (680)
++.+..-..|+++.+|..|.+...- -...+....|.+.++++|.....|++.-+|-+.-.||..+.+..|+-+..++
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rp---W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRI---WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCS---GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHH---HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 4556666667777777776554211 0111223445677888888888888888888888888888888888776654
Q ss_pred H
Q 005727 319 N 319 (680)
Q Consensus 319 ~ 319 (680)
.
T Consensus 218 ~ 218 (240)
T 3l9t_A 218 K 218 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.63 E-value=0.15 Score=58.39 Aligned_cols=307 Identities=16% Similarity=0.148 Sum_probs=172.6
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHH----
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLV---- 100 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrll---- 100 (680)
+..++.+...+-. ..-..=|..|..+|...+|..+.++- ..++.+++.|-+-.. |.+.-+++ +.|-.++
T Consensus 20 ~etI~~L~~Rl~~---~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVAS---STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCC
Confidence 3444445544433 33466688888888887776664432 224444444432211 22222222 2221111
Q ss_pred -------------------HHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh---hhchHHHHH
Q 005727 101 -------------------KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM---LGFLPDFLD 158 (680)
Q Consensus 101 -------------------kdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L---i~~Lp~~L~ 158 (680)
-|.+... ...|+.|...+...+.++|.+++..+..+....+... +-.-|.=++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp -------------CHHHHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred cccccccccccchHHHHHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 1111111 3469999999999999999999999999987665433 334567888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC----C----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--
Q 005727 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS----V----DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-- 228 (680)
Q Consensus 159 ~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~----~----d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~-- 228 (680)
.|..+|.|+...+|.++..+|..+.+ .+++ + .++.++.++-..-......+..-|+.-+..+++..+
T Consensus 170 ~Lv~lL~d~rE~iRneallLL~~Lt~---~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN 246 (651)
T 3grl_A 170 RLMDLLADSREVIRNDGVLLLQALTR---SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN 246 (651)
T ss_dssp HHHGGGGCSSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhc---CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH
Confidence 89999999999999998777666653 2211 1 244555555443333334566778888887776542
Q ss_pred cc-cc--cchHhHHHHHhhhhcCCchh----HHHHHH--HHHHHHHHhccCCCCC----------CChHhHHHHHHHhcC
Q 005727 229 DQ-LV--PYYADILGAILPCISDKEEK----IRVVAR--ETNEELRAIKADPADG----------FDVGPILSIATRQLS 289 (680)
Q Consensus 229 ~~-l~--pfLp~LLp~LL~~Lsds~~e----IR~~A~--~~n~~Ll~~v~~~~~~----------ldl~~iL~vL~~~L~ 289 (680)
+. |. .++|++.|.+ ...+++ -+..+. -++ .+.++.-.+++. +-=..++..|.+.+.
T Consensus 247 Q~~FrEt~~i~~L~~LL----~~~~~~~~W~~Qk~~N~~~~L-~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 247 QNFFKEGSYIQRMKPWF----EVGDENSGWSAQKVTNLHLML-QLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp HHHHHHTTCGGGGGGGG----CCCSCSSCCCHHHHHHHHHHH-HHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHh----CCCccccccHHHHHHHHHHHH-HHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 11 11 2344443322 211111 011110 011 122322222211 001245666777776
Q ss_pred CC--cHHHHHHHHHHHHHHHhhChhh---Hhh-------hhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhcc
Q 005727 290 SE--WEATRIEALHWISTLLNRHRTE---VLH-------FLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL 351 (680)
Q Consensus 290 ~~--~~~tR~aaL~WL~~L~~~~p~~---~~~-------~l~~l~p~LL~~LsD~s-~eV~~~al~lLa~Is~~~ 351 (680)
.+ ...+|..|+..++.+..+.+.. +.. -.+.++..|+..+.+.. ..+|-.++.++..|..+.
T Consensus 322 ~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 55 5678999999999999988762 211 12445555666666654 667778999999888543
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.62 E-value=0.0079 Score=60.68 Aligned_cols=191 Identities=14% Similarity=0.031 Sum_probs=116.4
Q ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHhcCc-ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCC
Q 005727 196 RMAEILVQRAASPDE--FTRLTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (680)
Q Consensus 196 ~II~iLl~~~~s~d~--~irl~Al~WL~e~~~l~~~-~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~ 272 (680)
--++.+++.++++++ .++..|..++..++.-.+. .-.-.-...+|.++..|...+++++..|..+...+..--.+..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 346777788888877 8888888888876643221 1111123567999999999999999998877664421100000
Q ss_pred CCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC-------C---------CCHH
Q 005727 273 DGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-------D---------PSDE 335 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls-------D---------~s~e 335 (680)
..+-=...++.|.+.|. +.++.+|+.|...|..+........ .....-+|.|+..+. | .+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 00000245677777776 4678888888877777765443321 122344677766542 1 2568
Q ss_pred HHHHHHHHHHHHhhccchHHH-------HHHHHHHhhcc-------cchhHHhHHHHHHHHHHhhcC
Q 005727 336 VVLLVLEVHACIAKDLQHFRQ-------LVVFLVHNFRV-------DNSLLEKRGALIIRRLCVLLD 388 (680)
Q Consensus 336 V~~~al~lLa~Is~~~~~F~~-------fm~~LL~lf~~-------d~~lLe~rg~~IIrqLc~~L~ 388 (680)
|...+..+|..++..++..++ .++.|+..++. +.+..|. .--++|+||..+.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En-~v~~L~nLs~~~~ 232 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATEN-CVCILHNLSYQLE 232 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHH-HHHHHHHHHhhhc
Confidence 899999999999864433333 34445555443 3454443 3558888887653
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.22 E-value=0.028 Score=56.64 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=97.9
Q ss_pred hHHHHhhccCCCCH--HHHHHHHHHHHHHHHhh---ccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH-----
Q 005727 33 IVPPVLNSFSDQDS--RVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK----- 101 (680)
Q Consensus 33 Iv~~VL~~l~D~d~--rVR~~A~eaL~nI~kv~---~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk----- 101 (680)
-+|+++..+..+|+ .++..|+.++.+++..- +..+. -...++.|.+++.++++.++..| .+|..+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~--~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN--QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH--HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 46888889987777 99999999999987432 11221 12346888999988899999988 77777654
Q ss_pred -HHhhccccccHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-------C------
Q 005727 102 -DIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-------D------ 166 (680)
Q Consensus 102 -div~es~~f~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs-------D------ 166 (680)
..+.+.| -||.|.+.+. ..++.+++.+++.+..|...+..-. .....-++.|.+++. |
T Consensus 87 k~~I~~~G------aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 87 KLEVAELN------GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp HHHHHHTT------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred HHHHHHcC------CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccc
Confidence 2333334 4888888887 5789999999999999987654221 112234556655442 1
Q ss_pred ---CChhHHHHHHHHHHHHH
Q 005727 167 ---SSHEIRQQADSALWEFL 183 (680)
Q Consensus 167 ---~~~dVR~~a~~~L~~fL 183 (680)
.+.+|+..|..+|..+-
T Consensus 160 ~~~~~~~v~~na~~~L~nLs 179 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMS 179 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHh
Confidence 25688888888877663
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.12 E-value=0.021 Score=66.18 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc-ccc
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES-DQF 110 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es-~~f 110 (680)
+.|++..|..+|+..|..||.+|.|++......-+ ..=+-|-..+.+++.|++..||.+| .+|..+..+-..+. +..
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 45788889999999999999999999754332111 1212334456678999999999999 78887764321110 000
Q ss_pred cHhhhHHHHHHHhc-------CC-------CH-------HHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCC--
Q 005727 111 SIEEFIPLLRERMN-------VL-------NP-------YVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSD-- 166 (680)
Q Consensus 111 ~L~~fIP~L~e~i~-------~~-------np-------~vR~~avswI~~L~sip~~~Li~~-Lp~~L~~Lf~lLsD-- 166 (680)
--..++|.|...+. .. .. .+-..+++.+..+....+..+... --..++.|+..+.+
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 00113444444332 11 11 122235566666665554332111 11334444444422
Q ss_pred -CChhHHHHHHHHHHHHHH
Q 005727 167 -SSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 167 -~~~dVR~~a~~~L~~fL~ 184 (680)
...+|+..|..||..+..
T Consensus 196 ~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHhc
Confidence 456899999999877654
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.56 E-value=2.4 Score=43.11 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=89.3
Q ss_pred HHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005727 101 KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 101 kdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
++++-..+.--++.|+|.+.+...+.+..+|+++++.|....... ..+.+..++.|..++.|.++.|-+.+..+..
T Consensus 40 ~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~ 115 (257)
T 3gs3_A 40 QETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACG 115 (257)
T ss_dssp HHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 343333333358899999999888999999999999998655322 4688999999999999999998877666665
Q ss_pred HHHH----HhhcCCCCC---------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005727 181 EFLQ----EIKNSPSVD---------YGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (680)
Q Consensus 181 ~fL~----ei~~~~~~d---------~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l 226 (680)
.+-+ .+-..+..+ +..+-..++....+.++.+|..|+..+..++.+
T Consensus 116 ~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 116 SIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 5543 333333321 355666777778888899999999999887643
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.50 E-value=2.3 Score=46.86 Aligned_cols=131 Identities=12% Similarity=0.137 Sum_probs=95.8
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L 153 (680)
+..+...+.. ++.+|.-| +.+.+.+|....-. +.-|..+.....+.++.||..++.-+-.++.- .++
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i 98 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENL 98 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhh
Confidence 3333344443 45556555 88888888665422 22366677778899999999888777766633 679
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005727 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (680)
Q Consensus 154 p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~ 224 (680)
+.+.+.|.++|.-.++..+.++.++|..+++ .|-...+..+..++..+++.+|..++..|.+=+
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-------~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFK-------MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 9999999999998888888888899888875 455566666777777788999999999887643
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.18 E-value=0.33 Score=47.53 Aligned_cols=159 Identities=13% Similarity=0.192 Sum_probs=102.0
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC------CCHHHHHHHHHHH
Q 005727 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS------PDEFTRLTAITWI 220 (680)
Q Consensus 147 ~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s------~d~~irl~Al~WL 220 (680)
.++..|+.++.+.+.. +.|++| | +.+.. +..+..++|+++..+.+ .|-+.-...+..+
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~a---L----~sL~~--D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIA---I----ECLEK--ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHH---H----HHHHH--CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHH---H----HHHhc--CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3455566666554443 346554 3 33334 45566666666655432 2444444456666
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhcCC---chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCC--cHHH
Q 005727 221 NEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WEAT 295 (680)
Q Consensus 221 ~e~~~l~~~~l~pfLp~LLp~LL~~Lsds---~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~--~~~t 295 (680)
..+++-..-.+-||+..++|.++.|+... ...+|+.|.+..+.+.+-.++....+ -+.+...+.+.+.|+ +..+
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t 149 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDS 149 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHH
Confidence 66666677788999999999999999643 23799999988887666655422222 367888888888764 4668
Q ss_pred HHHHHHHHHHHHhhChhhH-hhhhHHHH
Q 005727 296 RIEALHWISTLLNRHRTEV-LHFLNDIF 322 (680)
Q Consensus 296 R~aaL~WL~~L~~~~p~~~-~~~l~~l~ 322 (680)
..-|+.-+..++...-+.+ .|+++.+.
T Consensus 150 ~YGAi~GL~~lG~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 150 QYGALYCLSILSKNVVNTVIREHAEEYK 177 (196)
T ss_dssp HHHHHHHHHHHCHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhcCHHHHH
Confidence 8888888887777654443 35554443
No 112
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.87 E-value=0.86 Score=52.13 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=116.2
Q ss_pred ChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC--chhHHHHHHHHHHHHHHhcc
Q 005727 193 DYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 193 d~~~II~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds--~~eIR~~A~~~n~~Ll~~v~ 269 (680)
.-.+-|+.|..++++. -.+=|..|+.-++.|.+-.+..+. ..=+|.++..|... +.|+-+.+.++.-.++.-..
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666543 355688888888887665554433 33466666666543 44554444444332221111
Q ss_pred CCC------CC-CCh-----------HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh---HHHHHHHHHh
Q 005727 270 DPA------DG-FDV-----------GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL---NDIFDTLLKA 328 (680)
Q Consensus 270 ~~~------~~-ldl-----------~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l---~~l~p~LL~~ 328 (680)
++. .. -++ ++-++.|...|.+++..+|..+++.|..+....|+.+...+ +.-+|.|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 100 00 011 34567788889999999999999999999999999776543 3688999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhccchH------HHHHHHHHHhhcccch
Q 005727 329 LSDPSDEVVLLVLEVHACIAKDLQHF------RQLVVFLVHNFRVDNS 370 (680)
Q Consensus 329 LsD~s~eV~~~al~lLa~Is~~~~~F------~~fm~~LL~lf~~d~~ 370 (680)
|+|+.+.+|..++-+|..++.+.... +...+.|.+.+..+..
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 99999999999999999999655543 3346677777776654
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.84 E-value=1.1 Score=49.34 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=56.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHH
Q 005727 12 IVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQS 91 (680)
Q Consensus 12 ~~~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~ 91 (680)
+++|+. .+++..-...-+.-+...+--..|.|..||..|- -.+...|++ .+...|.|+|.+++.-.|+....
T Consensus 47 LaaQ~I--~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qai---k~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~E~~ 118 (507)
T 3u0r_A 47 LAAQFI--PKFFKHFPELADSAINAQLDLCEDEDVSIRRQAI---KELPQFATG---ENLPRVADILTQLLQTDDSAEFN 118 (507)
T ss_dssp HHHHHH--HHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHH---HHGGGGCCT---TCHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHH--HHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH---HhhHHHhhh---hhhhhHHHHHHHHHhccchHHHH
Confidence 344544 4455555566666778888889999999999764 455666776 56889999999998866665555
Q ss_pred HH-HHHHHHHH
Q 005727 92 AA-HLLDRLVK 101 (680)
Q Consensus 92 gA-~~Ldrllk 101 (680)
.. ..|-.++|
T Consensus 119 ~V~~sL~sllk 129 (507)
T 3u0r_A 119 LVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 54 44444433
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.70 E-value=4.2 Score=41.25 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=88.9
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
.++|+|+++++.+..|++.+||+.....+.+..+ .. .-....+++.|..-+.+.++.+...++.....
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~---~k-~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~-------- 116 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK---VK-VELLPHVINVVSMLLRDNSAQVIKRVIQACGS-------- 116 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH---HC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--------
Confidence 3789999999999999999999876554443332 11 11234455555555555555544444332221
Q ss_pred cccchHhHHHHHhhhhcCCc--hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 231 LVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 231 l~pfLp~LLp~LL~~Lsds~--~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
+-|.++.-+..+. ++--+...+. +.++-+.+...+.+.+..+|..|++.+-.+..
T Consensus 117 -------iY~~~l~~i~~~~~~~~~~~~~W~~----------------m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 117 -------IYKNGLQYLCSLMEPGDSAEQAWNI----------------LSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp -------HHHHHHHHHTTSSSCCHHHHHHHHH----------------HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCCCCcchHHHHHHH----------------HHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 1112222111110 0000011111 11222334444566677778888877766552
Q ss_pred hC---------------------------hhhHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhc-cchHHHHH
Q 005727 309 RH---------------------------RTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAKD-LQHFRQLV 358 (680)
Q Consensus 309 ~~---------------------------p~~~~~~l~~l~p~LL~~LsD~--s~eV~~~al~lLa~Is~~-~~~F~~fm 358 (680)
.. +..+..--.+++..|++.+.++ ++-....++..|+-|... .++...++
T Consensus 174 ~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl 253 (257)
T 3gs3_A 174 LQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVV 253 (257)
T ss_dssp HTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred hhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 21 1122233446777777776655 444555777888888854 34444444
Q ss_pred HH
Q 005727 359 VF 360 (680)
Q Consensus 359 ~~ 360 (680)
+.
T Consensus 254 ~a 255 (257)
T 3gs3_A 254 EA 255 (257)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.43 E-value=0.6 Score=53.94 Aligned_cols=69 Identities=17% Similarity=0.100 Sum_probs=51.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch-hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~-~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
+.|.| +.+.+.++..|..|+..|.++..-+.. .+..+-..+..-+-++++|++.+||.+|..+|+.+..
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 56665 569999999999999999999874432 2333333344445678999999999999999888864
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.38 E-value=6.7 Score=42.17 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=128.6
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH---H
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK---D 102 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk---d 102 (680)
...++.+++.++..-.|++..||+...+-+....+. + ..+.+.+++.|..++.|.|++|.+.+ .+...+.+ .
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~---~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-D---IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-C---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999888877652 1 23458899999999999999888877 54443332 3
Q ss_pred Hhhccc---------cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh--cCCch-----------h------------
Q 005727 103 IVTESD---------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD--SVPDI-----------D------------ 148 (680)
Q Consensus 103 iv~es~---------~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~--sip~~-----------~------------ 148 (680)
.+...+ --.+..+--.+...+.+.|..||..++..+..+. ..++. +
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 333221 1224556667777778889999999998888553 11110 1
Q ss_pred -----hhhchHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC--------HHHH
Q 005727 149 -----MLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--------EFTR 213 (680)
Q Consensus 149 -----Li~~Lp~~L~~Lf~lLsD~--~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d--------~~ir 213 (680)
|-.-=..+++.|++.+.++ ++-.-.+ +++.+.-.++..| ..+..|++.+........ ..++
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a---~lnsLa~Iak~RP-~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~ 289 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTT---ALGSLANIARQRP-MFMSEVIQAYETLHANLPPTLAKSQVSSVR 289 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHH---HHHHHHHHHHHSG-GGHHHHHHHHHHHHHCC----CGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHH---HHHHHHHHHHhcH-HHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 1111125677777777653 2222233 3444444444433 346788888876432211 1122
Q ss_pred HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHH
Q 005727 214 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (680)
Q Consensus 214 l~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR 254 (680)
.+.=.-+..+++.++. .||-++|-..+.. ++-+..|+.
T Consensus 290 KtLR~~Ll~lLK~p~s--~~~~~~I~~~L~~-Lg~s~~Ei~ 327 (386)
T 3o2t_A 290 KNLKLHLLSVLKHPAS--LEFQAQITTLLVD-LGTPQAEIA 327 (386)
T ss_dssp HHHHHHHHHHHTSGGG--GGGHHHHHHHHHH-TTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCc--hhhHHHHHHHHHH-HcccHHHHH
Confidence 2221122233343332 4888888877766 444444433
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.11 E-value=0.99 Score=44.11 Aligned_cols=141 Identities=13% Similarity=0.226 Sum_probs=98.4
Q ss_pred cchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhc------CCCHHHHHHHHHHH
Q 005727 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN------VLNPYVRQFLVGWI 138 (680)
Q Consensus 65 ~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~------~~np~vR~~avswI 138 (680)
.|...||.+|-+++.. ..|++| |..+ -+++| +..++|-+...+. -.|...=..++..+
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~a--L~sL----~~D~g---L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIA--IECL----EKESG---LQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHH--HHHH----HHCSS---CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHH--HHHH----hcCCC---hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3556788888888643 346555 3333 33433 5555666555553 34666667788889
Q ss_pred HHhhcCCchhhhhchHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCC--HHH
Q 005727 139 TVLDSVPDIDMLGFLPDFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPD--EFT 212 (680)
Q Consensus 139 ~~L~sip~~~Li~~Lp~~L~~Lf~lLsD---~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d--~~i 212 (680)
..+..-|...+-+|+..+++.+..++-. ....+|+.|++.++.+++..... ... -+.++..+...+.+++ ...
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~-y~~L~~RI~~tl~k~l~dp~~~l~t 149 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS-YKTLAPRVLKTLKGVWMDPNRSEDS 149 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT-STTHHHHHHHHHHHHHTCTTSCHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc-CchHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999877622 22279999999999999987653 223 3778888888887764 456
Q ss_pred HHHHHHHHHH
Q 005727 213 RLTAITWINE 222 (680)
Q Consensus 213 rl~Al~WL~e 222 (680)
...|+.-+..
T Consensus 150 ~YGAi~GL~~ 159 (196)
T 4atg_A 150 QYGALYCLSI 159 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6667766653
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.98 E-value=8 Score=41.57 Aligned_cols=274 Identities=14% Similarity=0.139 Sum_probs=147.0
Q ss_pred HHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005727 101 KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 101 kdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
++++-..+.--++.|+|.+.+...+++..+|+++++.|...... -..+++..++.|..++.|.++.|-+.+..+..
T Consensus 50 ~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~t 125 (386)
T 3o2t_A 50 QELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMT 125 (386)
T ss_dssp HHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44433233335788999999999999999999999999866542 24567999999999999999999888777766
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHH
Q 005727 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (680)
Q Consensus 181 ~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~ 260 (680)
.+-+. ++.++...=. +......+-+|+. .+-..|+..+...+.-+|-.|.+.
T Consensus 126 slYpl-----------~f~~i~~~~~--~~~~~e~~W~~m~---------------~lK~~Il~~~ds~n~GVrl~aiKF 177 (386)
T 3o2t_A 126 QLYKV-----------ALQWMVKSRV--ISELQEACWDMVS---------------AMAGDIILLLDSDNDGIRTHAIKF 177 (386)
T ss_dssp HHHHH-----------HHHHHHHC-C--CCHHHHHHHHHHH---------------HHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHH-----------HHHHHhcCCC--cchhHHHHHHHHH---------------HHHHHHHHHhccCCcchHHHHHHH
Confidence 55432 2233322111 1111122222332 333344555555677888888877
Q ss_pred HHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hhChhhHhhhhHHHHHHHHHhcCCC--CHHHH
Q 005727 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL-NRHRTEVLHFLNDIFDTLLKALSDP--SDEVV 337 (680)
Q Consensus 261 n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~-~~~p~~~~~~l~~l~p~LL~~LsD~--s~eV~ 337 (680)
.+.+...-......-+-+.- . .+ .-+|.|+--=+ -..+..+..--..++..|++.|.++ ++..+
T Consensus 178 le~VIl~qS~~~~d~~~p~~-----~--~~------d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l 244 (386)
T 3o2t_A 178 VEGLIVTLSPRMADSEIPRR-----Q--EH------DISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINL 244 (386)
T ss_dssp HHHHHHHTSCCCTTCCCCGG-----G--TT------SCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHH
T ss_pred HHHHHHHhCCCCCCcccccc-----c--CC------CCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHH
Confidence 77554433321110000000 0 00 01111111000 0022334444567778888888764 45455
Q ss_pred HHHHHHHHHHhh-ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHH
Q 005727 338 LLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAL 416 (680)
Q Consensus 338 ~~al~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~L 416 (680)
..++..|+-|+. ..+|...+++.++..-.+-..-+ .+ .-++-+- ..+.-.|..++..-.-.+|...+.+.|
T Consensus 245 ~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t~-sk--~qvkSv~-----KtLR~~Ll~lLK~p~s~~~~~~I~~~L 316 (386)
T 3o2t_A 245 TTALGSLANIARQRPMFMSEVIQAYETLHANLPPTL-AK--SQVSSVR-----KNLKLHLLSVLKHPASLEFQAQITTLL 316 (386)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC-----CG--GGHHHHH-----HHHHHHHHHHHTSGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCccH-HH--HHHHHHH-----HHHHHHHHHHHcCCCchhhHHHHHHHH
Confidence 567788888885 45666778887775432212111 11 0011111 123334444554334457877777777
Q ss_pred HHHHhchHHHH
Q 005727 417 NLILLTSSELS 427 (680)
Q Consensus 417 n~iLLTa~EL~ 427 (680)
...--+-.|..
T Consensus 317 ~~Lg~s~~Ei~ 327 (386)
T 3o2t_A 317 VDLGTPQAEIA 327 (386)
T ss_dssp HHTTCCHHHHH
T ss_pred HHHcccHHHHH
Confidence 66444444443
No 119
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=93.96 E-value=6.3 Score=41.28 Aligned_cols=216 Identities=12% Similarity=0.157 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHhcCc---ccccchHhHHHHHhhhhcCCchhHH-----HHHHHHHHHHHHhccCCCCCCChHhHHHH
Q 005727 212 TRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEKIR-----VVARETNEELRAIKADPADGFDVGPILSI 283 (680)
Q Consensus 212 irl~Al~WL~e~~~l~~~---~l~pfLp~LLp~LL~~Lsds~~eIR-----~~A~~~n~~Ll~~v~~~~~~ldl~~iL~v 283 (680)
+|.+.+.-+..+++-+++ ..-.++|.++.+++.--..+.|+.| ......-..+-+.+.+ .++.|++.
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~-----~vp~Il~~ 119 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA-----EIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG-----GHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh-----hHHHHHHH
Confidence 344455555555443322 1244677777766664444544444 3322222222222211 13333332
Q ss_pred H----HHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHH----HHHHHhcCCCCHHHHHHHHHHHHHHh----
Q 005727 284 A----TRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIF----DTLLKALSDPSDEVVLLVLEVHACIA---- 348 (680)
Q Consensus 284 L----~~~L~---~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~----p~LL~~LsD~s~eV~~~al~lLa~Is---- 348 (680)
+ ..+.. ++-++.|+.=..+|.++...|...+...-++-+ ..++=..+++..+|-..++..+..+-
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 2 22222 456889999999999999999998876655544 45555589999999888887665443
Q ss_pred hc--------cchHHHHHHHHHHhhccc-chhHHhHHHHHHHHHHhhc----------------ChhhHHHHHHHhhccc
Q 005727 349 KD--------LQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLL----------------DAERVYRELSTILEGE 403 (680)
Q Consensus 349 ~~--------~~~F~~fm~~LL~lf~~d-~~lLe~rg~~IIrqLc~~L----------------~~e~Iy~~La~iL~~~ 403 (680)
++ ..||-.++..++..+-|. .+-.=+.-..|+++|.... |.+.+...+++.|...
T Consensus 200 ~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~ 279 (321)
T 1w9c_A 200 QEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSA 279 (321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHh
Confidence 21 234555666665555332 2211123456788877443 2356677777777553
Q ss_pred -CCh--hHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q 005727 404 -ADL--DFACTMVQALNLILLTSSELSELRDLLKK 435 (680)
Q Consensus 404 -~Dl--~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~ 435 (680)
..+ .-+...|+-| .-...+..+||+.||+
T Consensus 280 Fp~l~~~qi~~fv~gl---f~~~~d~~~Fk~~lrD 311 (321)
T 1w9c_A 280 FPHLQDAQVKLFVTGL---FSLNQDIPAFKEHLRD 311 (321)
T ss_dssp CTTSCHHHHHHHHHHH---HHTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---HHccCCHHHHHHHHHH
Confidence 332 2222333333 2234567788888887
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.84 E-value=1.6 Score=46.13 Aligned_cols=229 Identities=15% Similarity=0.196 Sum_probs=136.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005727 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVD----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (680)
Q Consensus 154 p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~--~~~d----~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~ 227 (680)
.+++..|...+..=+-|.|+-+......+++.=... +.++ -++++.+|+..-.++| ++..+=..+++.++-.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhHHHHHHHHHHHhH
Confidence 355666677777778899998888877776521111 0111 2667777777766544 4444444455544321
Q ss_pred Ccccccc--hHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC-CC--CCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005727 228 GDQLVPY--YADILGAILPCISDKEEKIRVVARETNEELRAIKADP-AD--GFDVGPILSIATRQLSSEWEATRIEALHW 302 (680)
Q Consensus 228 ~~~l~pf--Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~-~~--~ldl~~iL~vL~~~L~~~~~~tR~aaL~W 302 (680)
. +..| -+..+--++.-+..++-||-.-|-.+-.+++.--... ++ .-+|+.+.......+.+++-.||..+++.
T Consensus 155 ~--la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 155 P--LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp H--HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H--HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 0 0000 0111223344556667777655555444433210000 01 13688888888888899999999999999
Q ss_pred HHHHHhh--ChhhHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc---hH-------HHHHHHHHHhhcc-
Q 005727 303 ISTLLNR--HRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ---HF-------RQLVVFLVHNFRV- 367 (680)
Q Consensus 303 L~~L~~~--~p~~~~~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~---~F-------~~fm~~LL~lf~~- 367 (680)
||.+..- .-.-|..|. ++-+..++..|+|++..|.-.|.-+..-...|.. -. +.-+-..+.-|.+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d 312 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQND 312 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9988765 444566664 4577899999999999998888887776653211 00 1122233444443
Q ss_pred ---cchhHHhHHHHHHHHHHhhc
Q 005727 368 ---DNSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 368 ---d~~lLe~rg~~IIrqLc~~L 387 (680)
|....++| +++|+++..+=
T Consensus 313 ~~eDeqF~dEK-~~lI~~I~~L~ 334 (341)
T 1upk_A 313 RTEDEQFNDEK-TYLVKQIRDLK 334 (341)
T ss_dssp C-CCSHHHHHH-HHHHHHHHTCC
T ss_pred CcchhhHHHHH-HHHHHHHHhCC
Confidence 34566666 88999887763
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.00 E-value=9 Score=46.54 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=117.3
Q ss_pred HhHHHHHhhhhcC----CchhHHHHHHHHHHHHHHh-ccCCCC-C-CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 236 ADILGAILPCISD----KEEKIRVVARETNEELRAI-KADPAD-G-FDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 236 p~LLp~LL~~Lsd----s~~eIR~~A~~~n~~Ll~~-v~~~~~-~-ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
++++..+...+.. +++.+|..|.-+.+.+..- +.+... . -.++.+.+.+.+.+...+...+..+|+.||.+..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 4566666665554 3567888887777765543 332111 1 1156777777777777777788888888888775
Q ss_pred hChhhHhhhhHHHHHHHHHhcCC-----C--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHH
Q 005727 309 RHRTEVLHFLNDIFDTLLKALSD-----P--SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIR 381 (680)
Q Consensus 309 ~~p~~~~~~l~~l~p~LL~~LsD-----~--s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIr 381 (680)
+..++.|.+.+.. . ...|+..|+++|.++... +=+.+-..+++.|.+...--|-|..- +-
T Consensus 470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA-~~ 536 (1056)
T 1lsh_A 470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRS-CI 536 (1056)
T ss_dssp ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHH-HH
T ss_pred ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHH-HH
Confidence 2345666666642 2 346888999999999842 33345566777776554444556333 33
Q ss_pred HHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHHHH-hchHHHHHHHH
Q 005727 382 RLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLIL-LTSSELSELRD 431 (680)
Q Consensus 382 qLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iL-LTa~EL~~lR~ 431 (680)
.|-..-++..+...++..+..|.+....+-+...|..+. .+.|...+++.
T Consensus 537 ~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~ 587 (1056)
T 1lsh_A 537 VFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAA 587 (1056)
T ss_dssp HHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 333334667899999999999988766666666666655 45677767654
No 122
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=88.61 E-value=8.8 Score=41.44 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=116.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d 193 (680)
.|+-.|.+.+.++||+=|.++-+.+..+.+.-. . -.+-+|++..+.+-+|+-+.. .+..
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~--------~-----------~R~~Irk~innif~~fiye~e--~~~G 187 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL--------G-----------LRAYIRKQINNIFYRFIYETE--HHNG 187 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH--------H-----------HHHHHHHHHHHHHHHHHHTTC--CCTT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhh--------h-----------hHHHHHHHHHHHHHHHhcCcc--cCCC
Confidence 478889999999999999999888876542110 0 113456665566666665432 2344
Q ss_pred hHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhc-C-----------------Cc
Q 005727 194 YGRMAEILVQRAA---SPD-EFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCIS-D-----------------KE 250 (680)
Q Consensus 194 ~~~II~iLl~~~~---s~d-~~irl~Al~WL~e~~~l~-~~~l~pfLp~LLp~LL~~Ls-d-----------------s~ 250 (680)
++++++++-.-+. -|- ++-+. .+.+.++-+- +..+..|-+++.-.+...+. | ++
T Consensus 188 IaeLLeilgsIinGfa~PLkeehk~---fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn 264 (403)
T 3fga_B 188 IAELLEILGSIINGFALPLKEEHKI---FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH 264 (403)
T ss_dssp HHHHHHHHHHHHHHCCSSCCHHHHH---HHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHcccCCCchHHHHH---HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC
Confidence 5666666544332 222 33222 1233333332 23344455555555444443 1 12
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCChH----hHHHHHHHhcCCCcHHHHHHHHHHH-----HHHHhhChhhHhhhhHHH
Q 005727 251 EKIRVVARETNEELRAIKADPADGFDVG----PILSIATRQLSSEWEATRIEALHWI-----STLLNRHRTEVLHFLNDI 321 (680)
Q Consensus 251 ~eIR~~A~~~n~~Ll~~v~~~~~~ldl~----~iL~vL~~~L~~~~~~tR~aaL~WL-----~~L~~~~p~~~~~~l~~l 321 (680)
.....+...-.+++++.+. .-++. .+...+...+.+++..+-++|+..+ ..+.....+.+ ++-+
T Consensus 265 s~KevlFL~Ele~iLe~~~----~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~I---lPii 337 (403)
T 3fga_B 265 SPKEVMFLNELEEILDVIE----PSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI---LPIM 337 (403)
T ss_dssp HHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHH---HHHH
T ss_pred cHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHH---HHHH
Confidence 1111112222222222221 11233 4555677777899999888888532 33333333333 3346
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHhh-ccchHHHHHHHH
Q 005727 322 FDTLLKALSDP-SDEVVLLVLEVHACIAK-DLQHFRQLVVFL 361 (680)
Q Consensus 322 ~p~LL~~LsD~-s~eV~~~al~lLa~Is~-~~~~F~~fm~~L 361 (680)
+|+|.+....- ++.|+..+..++.-+.+ +.+-|+......
T Consensus 338 ~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~ 379 (403)
T 3fga_B 338 FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQF 379 (403)
T ss_dssp HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 67777655544 78999999999988874 445555544443
No 123
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=88.36 E-value=45 Score=39.16 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=126.6
Q ss_pred hhhhHHHHhhccCCCCHHHH--HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhh--cCCChhHHHHHHHHHHHHHHHhh
Q 005727 30 LQQIVPPVLNSFSDQDSRVR--YYACEALYNIAKVVRGDFIIFFNQIFDALCKLS--ADSDANVQSAAHLLDRLVKDIVT 105 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR--~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~--aD~d~~Vr~gA~~Ldrllkdiv~ 105 (680)
++.|...+++.|++.-.-.+ ..|--.+|-+.....+.++.++..++.++...+ ++.-.-.+.-+..+..+++..+.
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888888873211111 122212222221112356778888888888775 33333344444555555444332
Q ss_pred ----cc-----------------ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc
Q 005727 106 ----ES-----------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML 164 (680)
Q Consensus 106 ----es-----------------~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lL 164 (680)
|. -..=++.+.|.+...+++++..+...+.+++..|+-+.|.+--..+|.+++.+...|
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sL 389 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTL 389 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHh
Confidence 20 012267889999999999999999999999999999888666677899999888887
Q ss_pred CC---CChhHHHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 005727 165 SD---SSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (680)
Q Consensus 165 sD---~~~dVR~~a~~~L~~fL~ei~~~~--~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~ 225 (680)
.. ..+.=-.+|.++|..+.+.+...+ ..++.+++..++..+...|+.--..++..+..+..
T Consensus 390 e~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 390 ADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 65 333322556677777777775532 23677788888888888887655556666666654
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=88.24 E-value=24 Score=36.44 Aligned_cols=152 Identities=18% Similarity=0.113 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHh-----hhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhcc--
Q 005727 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL-----HFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKDL-- 351 (680)
Q Consensus 280 iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~-----~~l~~l~p~LL~~LsD~-s~eV~~~al~lLa~Is~~~-- 351 (680)
-++.+.+.+ ++....|..+++.+..++. .|..-. +.-+.++..+++.++++ .+.-+..++++++...++.
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 455666655 6666788999988887654 332211 11245666777777654 4556778999999887532
Q ss_pred -----chHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh-------hhHHHHHHHhhcccCChhHHHHHHHHHHHH
Q 005727 352 -----QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------ERVYRELSTILEGEADLDFACTMVQALNLI 419 (680)
Q Consensus 352 -----~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~-------e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~i 419 (680)
..+..++..+.....+.++.++..++..+-++...+.. +.+...+..+++.++|.+-+.++...|.++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 24566777777776667788888888888888887532 456666677777788999999999999999
Q ss_pred HhchHHHHHHHHHH
Q 005727 420 LLTSSELSELRDLL 433 (680)
Q Consensus 420 LLTa~EL~~lR~~L 433 (680)
+-..+++.++-+.+
T Consensus 262 ~~~~~~~~~lak~l 275 (304)
T 3ebb_A 262 ISDDSNAVQLAKSL 275 (304)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HhCChhHHHHHHHc
Confidence 98888776665544
No 125
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=87.31 E-value=32 Score=36.21 Aligned_cols=193 Identities=12% Similarity=0.050 Sum_probs=135.3
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc---hhhh---HHHHHHHHHHhhcCCChhHHHHHHHH-----
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD---FIIF---FNQIFDALCKLSADSDANVQSAAHLL----- 96 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~---il~~---f~eIfd~L~kL~aD~d~~Vr~gA~~L----- 96 (680)
-|-..++..++.++..=+-..|+-++....++.+.-.|+ ...| -++|++.|+++..++|...--|.-+-
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence 355677788889999889999998887777765432221 1122 38999999999999987665554211
Q ss_pred HHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh----hhhchHHHHHHHHHhcCCCChhHH
Q 005727 97 DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID----MLGFLPDFLDGLFNMLSDSSHEIR 172 (680)
Q Consensus 97 drllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~----Li~~Lp~~L~~Lf~lLsD~~~dVR 172 (680)
..+++-+. +++ .+-.+++.+..++..|-.-|.+.+.-+....+.- +..+.+.|+...-+++..+|=-.|
T Consensus 154 e~la~~iL-~~~------~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 154 EPLAKIIL-WSE------QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHHHHHH-HSG------GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHh-ccH------HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 11222122 222 2335667888888898888888888665543322 445778899988899999999999
Q ss_pred HHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005727 173 QQADSALWEFLQEIKNS----PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (680)
Q Consensus 173 ~~a~~~L~~fL~ei~~~----~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~ 227 (680)
+.+-.+|++++-.=.+. ..++=+.-+.+++..++++...||..|.+-...|+.-+
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99999999998532110 01223566778888999999999999999999888654
No 126
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=85.18 E-value=65 Score=37.80 Aligned_cols=115 Identities=12% Similarity=0.175 Sum_probs=75.8
Q ss_pred hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc---cchhhhHHHHHHHHHHhhcC---CChhHHHHH-HHHH
Q 005727 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSAD---SDANVQSAA-HLLD 97 (680)
Q Consensus 25 ~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~---~~il~~f~eIfd~L~kL~aD---~d~~Vr~gA-~~Ld 97 (680)
....+.+.+.|.++.++..++..+..++..++.+++-+.. +-++ |.+++-+-..++. .+++--.+| ..|.
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl---P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY---DKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH---HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh---HHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 3467778888999999999999999999999999987555 4443 4444444433444 566655555 7788
Q ss_pred HHHHHHhhcccc-ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 005727 98 RLVKDIVTESDQ-FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (680)
Q Consensus 98 rllkdiv~es~~-f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~ 142 (680)
.++.-++....- ..+..++..+...|...|+.--...++.+..+.
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 777777764321 124444555555566677765566666666553
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.77 E-value=7 Score=41.89 Aligned_cols=173 Identities=10% Similarity=0.128 Sum_probs=101.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc--c-hHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHH
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAKDL--Q-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~--~-~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~L 396 (680)
..+..|..+|..+.+.++..++++|+-+|.-. . -++.++.++-. +.. .. ++ .-|..+
T Consensus 162 ~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~-~~~-~~---e~---------------~RF~~l 221 (383)
T 3eg5_B 162 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE-RAE-MD---EV---------------ERFQPL 221 (383)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH-HHH-HH---TS---------------CTTHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH-HHH-hC---CC---------------CcHHHH
Confidence 45677888898889999999999999998422 2 48888888754 322 11 11 124555
Q ss_pred HHhhcccCChhHHHHHHHHHHHHHhchHHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhh--hhHH--
Q 005727 397 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQ--TYHH-- 472 (680)
Q Consensus 397 a~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~--~Y~~-- 472 (680)
-+.|....+.++...+.+.+|.++-+.+++. +|..||..+..-.-..++.. ++. +.|+. |..| .|+.
T Consensus 222 v~~L~~~~~~e~~~~~m~lIN~li~~~~dl~-~R~~lR~ef~~~Gl~~il~~-lr~-~~~~~------L~~Qi~~fe~~~ 292 (383)
T 3eg5_B 222 LDGLKSGTSIALKVGCLQLINALITPAEELD-FRVHIRSELMRLGLHQVLQE-LRE-IENED------MKVQLCVFDEQG 292 (383)
T ss_dssp HHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-HHHHHHHHHHHTTHHHHHHH-HTT-SCCHH------HHHHHHHHHHHH
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHCChHHHHHH-Hhc-CCChh------HHHHHHHHHHHH
Confidence 5566666788998888999998887776653 46666652211222233332 121 12222 1111 2222
Q ss_pred ---HHHHHHHHhhcCcchhhHHhHHHHHHhhccchhHHHHHHhcCCCCCchHHHHHHHHHhhh
Q 005727 473 ---ASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 532 (680)
Q Consensus 473 ---a~~ll~~~~~~~~~~~~l~qid~LVqLlEsPif~~lRlqLLe~~~~~~l~k~l~gllm~l 532 (680)
-..+.+.|....++.+...+ +|..|+-++=.-..+||+.-.|..||++-
T Consensus 293 ~eD~~el~~r~~~~~~d~~d~~~-----------~~~~l~~~~~~t~a~~~flSiLQhLlli~ 344 (383)
T 3eg5_B 293 DEDFFDLKGRLDDIRMEMDDFGE-----------VFQIILNTVKDSKAEPHFLSILQHLLLVR 344 (383)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHH-----------HHHHHHHHTTTSTTHHHHHHHHHHTTCSC
T ss_pred HHhHHHHHhhccccCcCcCCHHH-----------HHHHHHHHhcCCcchHHHHHHHHHHHhcc
Confidence 12344444432222222221 35556666666677899999999998774
No 128
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=83.36 E-value=50 Score=36.07 Aligned_cols=239 Identities=15% Similarity=0.202 Sum_probs=117.4
Q ss_pred HHHHHHHHhhhhh----hhhhhhhhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHhh---ccchhhhHHHHHHHHHHh
Q 005727 10 EIIVEQFLLYADL----FFYSETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKL 81 (680)
Q Consensus 10 ~~~~~~~~~~~~~----~~~~~~yL~~-Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~---~~~il~~f~eIfd~L~kL 81 (680)
|.+-|-++.|..- ....++|++. ++-.++..|..+|+|-|.+....+..|-... |.-+...++.+ +.+.
T Consensus 135 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni---f~~f 211 (449)
T 2npp_B 135 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI---FYRF 211 (449)
T ss_dssp HHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4555555544321 1234667666 7899999999999999999998887774322 22233333333 3444
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhhcc--------ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005727 82 SADSDANVQSAAHLLDRLVKDIVTES--------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (680)
Q Consensus 82 ~aD~d~~Vr~gA~~Ldrllkdiv~es--------~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L 153 (680)
+-.++.. +|...|=.++..|+..- ..|-...++|+...... +.--+.+..++..+....+ ..-
T Consensus 212 i~e~e~~--nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l---~~y~~qL~ycv~qf~eKDp----~L~ 282 (449)
T 2npp_B 212 IYETEHH--NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSL---SVYHPQLAYCVVQFLEKDS----TLT 282 (449)
T ss_dssp HHTCSCC--SCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCG---GGTHHHHHHHHHHHHHHCG----GGH
T ss_pred hcccCCC--CCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchh---HHhHHHHHHHHHHHHhcCc----HhH
Confidence 4333321 23211222222333211 01112223333221110 0011123334443332221 122
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHH-HHHHH-HHhc
Q 005727 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY----GRMAEILVQRAASPDEFTRLTAIT-WINEF-VKLG 227 (680)
Q Consensus 154 p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~----~~II~iLl~~~~s~d~~irl~Al~-WL~e~-~~l~ 227 (680)
..++.||++.= |.....+++. -|+.+-..+...+..++ .++...+-.++.+++-.|+..|+. |-++- +.+
T Consensus 283 ~~vi~~LLk~W--P~tns~Kevl-FL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l- 358 (449)
T 2npp_B 283 EPVVMALLKYW--PKTHSPKEVM-FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL- 358 (449)
T ss_dssp HHHHHHHHHTC--CSSCHHHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH-
T ss_pred HHHHHHHHHhC--CCCCchHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH-
Confidence 34555665443 2222333331 23333222221112234 445556667788999999999988 76553 222
Q ss_pred CcccccchHhHHHHHhhhhcC-----CchhHHHHHHHHHHHHHHh
Q 005727 228 GDQLVPYYADILGAILPCISD-----KEEKIRVVARETNEELRAI 267 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Lsd-----s~~eIR~~A~~~n~~Ll~~ 267 (680)
+..+-..++|.+++.+-. =+..||..|..+...++++
T Consensus 359 ---i~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 359 ---ISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp ---HHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred ---HHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 123445566666666532 2688999999988766554
No 129
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=83.20 E-value=54 Score=35.29 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=116.7
Q ss_pred HHHHHHHHhhhhh----hhhhhhhhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHhh---ccchhhhHHHHHHHHHHh
Q 005727 10 EIIVEQFLLYADL----FFYSETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKL 81 (680)
Q Consensus 10 ~~~~~~~~~~~~~----~~~~~~yL~~-Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~---~~~il~~f~eIfd~L~kL 81 (680)
|.+-|-++.+..- ....++|++. ++-.++..|..+|+|=|.+....+..|-... |.-+...++.+ +.+.
T Consensus 102 qlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni---f~~f 178 (403)
T 3fga_B 102 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI---FYRF 178 (403)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHH
Confidence 4455555444332 1223567666 6788999999999999999998887763222 22233333333 4444
Q ss_pred hcCCC--hhHHHHHHHHHHHHHHHhhcc----ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH
Q 005727 82 SADSD--ANVQSAAHLLDRLVKDIVTES----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD 155 (680)
Q Consensus 82 ~aD~d--~~Vr~gA~~Ldrllkdiv~es----~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~ 155 (680)
+-.++ ..|-+-=+.|...+.+..... ..|-...++|+-...-. ..--+.+..++..+.+..+ ..-..
T Consensus 179 iye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~---~~y~~qL~ycv~qf~eKDp----~L~~~ 251 (403)
T 3fga_B 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSL---SVYHPQLAYCVVQFLEKDS----TLTEP 251 (403)
T ss_dssp HHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTG---GGTHHHHHHHHHHHHHHCG----GGHHH
T ss_pred hcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHHHhCc----hhHHH
Confidence 43333 222221133344444332110 11112223332211110 0111223334443332222 12334
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChH----HHHHHHHHhcCCCCHHHHHHHHH-HHHHH-HHhcCc
Q 005727 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG----RMAEILVQRAASPDEFTRLTAIT-WINEF-VKLGGD 229 (680)
Q Consensus 156 ~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~----~II~iLl~~~~s~d~~irl~Al~-WL~e~-~~l~~~ 229 (680)
++.||++.= |.....+++ --|+.+-..+...+..++. ++...+-.++.+++-.|+..|+. |-++. +.+-
T Consensus 252 vi~~LLk~W--P~tns~Kev-lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li-- 326 (403)
T 3fga_B 252 VVMALLKYW--PKTHSPKEV-MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-- 326 (403)
T ss_dssp HHHHHHHTC--CSSCHHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH--
T ss_pred HHHHHHHhC--CCCCcHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH--
Confidence 455555433 222233333 1233332222211122344 34555666778899889998887 65442 2221
Q ss_pred ccccchHhHHHHHhhhh----c-CCchhHHHHHHHHHHHHHHh
Q 005727 230 QLVPYYADILGAILPCI----S-DKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 230 ~l~pfLp~LLp~LL~~L----s-ds~~eIR~~A~~~n~~Ll~~ 267 (680)
..+-..++|.+.+.+ . +=++.||..|..+...++++
T Consensus 327 --~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 327 --SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp --HTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred --HHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 223444555555544 3 22789999999998877665
No 130
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=82.84 E-value=13 Score=36.66 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=100.1
Q ss_pred HhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005727 140 VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITW 219 (680)
Q Consensus 140 ~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~W 219 (680)
.|....+.+-..++..++++-+.+++=..|++|+.|-.. .++.+.....++..++..|. +++..+.|..|+.+
T Consensus 12 ~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~----~k~~~~~~~~~~~~~~~~L~---~~~~~E~r~~ai~~ 84 (232)
T 3jxy_A 12 HFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDI----IQIHTLPDQKDFQIIIRELW---DLPEREFQAAALDI 84 (232)
T ss_dssp HHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHH----HHHHCCCCGGGHHHHHHHHH---TSSBHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHH----HHhccccchhhHHHHHHHHh---cCcHHHHHHHHHHH
Confidence 344444444455555555555677777888999876443 33332211224444444444 45667899999998
Q ss_pred HHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHH-HHHHHHHHHHhccCCCCCCChHh-HHHHHHHhcCCCcHHHHH
Q 005727 220 INEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVV-ARETNEELRAIKADPADGFDVGP-ILSIATRQLSSEWEATRI 297 (680)
Q Consensus 220 L~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~-A~~~n~~Ll~~v~~~~~~ldl~~-iL~vL~~~L~~~~~~tR~ 297 (680)
+.....-...+-++++-..++ . .++=++-+. |..+.+.+..- .+. +.+.+.+-..+++..+|.
T Consensus 85 l~~~~k~~~~~~l~~~~~~l~----~--~~nWd~~D~~a~~~~g~~~~~---------~p~~~~~~l~~W~~s~~~w~rR 149 (232)
T 3jxy_A 85 MQKYKKHINETHIPFLEELIV----T--KSWWDSVDSIVPTFLGDIFLK---------HPELISAYIPKWIASDNIWLQR 149 (232)
T ss_dssp HHHTGGGCCGGGHHHHHHHHT----S--SCCHHHHHHHTTTHHHHHHHH---------CGGGGGGTHHHHHHSSCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----c--CCChHHHHHhhHHHHHHHHHH---------CHHHHHHHHHHHhcCCchHHHH
Confidence 874322211122222222222 1 223233222 22332322221 123 556677777788877777
Q ss_pred HHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 298 EALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 298 aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
+|+.-+ +.. ......+.+++.+...+.|++.-|+..+-|.|..++.
T Consensus 150 ~ai~~~--l~~----~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 150 AAILFQ--LKY----KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp HHHHTT--TTC----GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH--HHH----HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 765432 111 1122344566777788899999999999999999994
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.65 E-value=4.8 Score=36.94 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=60.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
-+..|..|+...||.+-..++..+..+.+-.+..+...+ -+|++.|.+++..++++||+.+.+++...-..++..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 466677888899999999999999988888776655433 567777878887789999999888888888777654
No 132
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=81.87 E-value=35 Score=36.38 Aligned_cols=175 Identities=10% Similarity=0.169 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccc-hHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHH
Q 005727 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRE 395 (680)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~~~-~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~ 395 (680)
+..+..|..+|.-+.+.++..++++|+-+|- ++. .++.++..+-..-.. .++ .-|..
T Consensus 99 ~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~-----~e~---------------~RF~~ 158 (386)
T 2bnx_A 99 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM-----DEV---------------ERFQP 158 (386)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH-----HTS---------------CTTHH
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh-----Cch---------------hhHHH
Confidence 3457888899988889999999999999883 222 388888887653111 111 12444
Q ss_pred HHHhhcccCChhHHHHHHHHHHHHHhchHHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhh--hhHHH
Q 005727 396 LSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQ--TYHHA 473 (680)
Q Consensus 396 La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~--~Y~~a 473 (680)
+-+.+....+.++...+.+..|.++-+.+++ ++|..||+.+..-.-..++..| +.. .||. |-.| .|+..
T Consensus 159 lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl-~~R~~LR~Ef~~~GL~~il~~L-r~~-~~~~------L~~Qi~~fe~~ 229 (386)
T 2bnx_A 159 LLDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRSELMRLGLHQVLQEL-REI-ENED------MKVQLCVFDEQ 229 (386)
T ss_dssp HHHHTSTTSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHTTHHHHHHHH-TTC-CCHH------HHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCChHHHHHHH-hcc-CChh------HHHHHHHHHHH
Confidence 4455555677889888999999988887775 4577777522111222222222 221 2222 1111 22222
Q ss_pred -----HHHHHHHhhcCcchhhHHhHHHHHHhhccchhHHHHHHhcCCCCCchHHHHHHHHHhhhc
Q 005727 474 -----SAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLP 533 (680)
Q Consensus 474 -----~~ll~~~~~~~~~~~~l~qid~LVqLlEsPif~~lRlqLLe~~~~~~l~k~l~gllm~lp 533 (680)
..+.+.|.++.++++...+ +|..+.-++=+-+.+||+...|..||++=+
T Consensus 230 ~~eD~~el~~r~~~i~~d~~d~~~-----------~~~~l~~~~~~t~~~~~flSiLQhLLli~~ 283 (386)
T 2bnx_A 230 GDEDFFDLKGRLDDIRMEMDDFGE-----------VFQIILNTVKDSKAEPHFLSILQHLLLVRN 283 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHH-----------HHHHHHHHHTTSTHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHH-----------HHHHHHHHHcCCCchhHHHHHHHHHHhCCC
Confidence 1233333333222222222 344455555555668999999999987743
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.84 E-value=8 Score=36.39 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=59.3
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
..-+..|..|+...||.+...++..+..+.+-.+..+...+ -+|++.|.+++.. +++.||+.+.+++..--..++..
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33466778889999999999999999999888776554333 3577777777765 67899998888888777777653
No 134
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=77.95 E-value=19 Score=38.45 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=43.9
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-hh----HhhhhHHH--------HHHHHHhcCCC-CHHHHHHHHHH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHR-TE----VLHFLNDI--------FDTLLKALSDP-SDEVVLLVLEV 343 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p-~~----~~~~l~~l--------~p~LL~~LsD~-s~eV~~~al~l 343 (680)
+..+..|..-+.+....+|..|++.|.++..... ++ +..-++.+ |-.++..|... +.+....++.+
T Consensus 161 ~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~l 240 (383)
T 3eg5_B 161 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQL 240 (383)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHH
Confidence 5678888899999999999999999988776552 22 33333333 45566666653 33333333344
Q ss_pred HHHHh
Q 005727 344 HACIA 348 (680)
Q Consensus 344 La~Is 348 (680)
+..+.
T Consensus 241 IN~li 245 (383)
T 3eg5_B 241 INALI 245 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 135
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=77.44 E-value=51 Score=36.00 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred cCcccccchHhHHHHHhhhhcCCchhHHHHHHHH--HHHHHHhccCCCCCCChHhHHHHHHHhc-----CCCcHHHHHHH
Q 005727 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARET--NEELRAIKADPADGFDVGPILSIATRQL-----SSEWEATRIEA 299 (680)
Q Consensus 227 ~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~--n~~Ll~~v~~~~~~ldl~~iL~vL~~~L-----~~~~~~tR~aa 299 (680)
.+..+......+...+-.|++.++-.|-+.|... |..++.++.+. -..+++++...+ .+++..+|..+
T Consensus 316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n-----~~~IlPii~p~L~~~s~~HWn~~V~~la 390 (449)
T 2npp_B 316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHGLI 390 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHTSCTTCCSSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc-----hhhhHHhhHHHHHHHHHHhcCHHHHHHH
Confidence 4556777778888888899998888777766542 45566666542 244556655544 36777799999
Q ss_pred HHHHHHHHhhChhhHh
Q 005727 300 LHWISTLLNRHRTEVL 315 (680)
Q Consensus 300 L~WL~~L~~~~p~~~~ 315 (680)
...+..+.+.+|.-+.
T Consensus 391 ~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 391 YNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCHHHHH
Confidence 9999999998865443
No 136
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=77.22 E-value=74 Score=33.18 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhcCC-chhh--hhchHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc
Q 005727 130 VRQFLVGWITVLDSVP-DIDM--LGFLPDFLDGLFNMLSDSSHEIR-QQADSALWEFLQEIKNSPSVDYGRMAEILVQRA 205 (680)
Q Consensus 130 vR~~avswI~~L~sip-~~~L--i~~Lp~~L~~Lf~lLsD~~~dVR-~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~ 205 (680)
+|+-++..+..+.+.. +.+. ..++|.+++.++.==.++.|+.| -++-+++..++..++......++.|.+.+-.++
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~T 124 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT 124 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444555555444332 2222 23444444433221122556666 234455555666565544456666666655443
Q ss_pred ----C---CCCHHHHHHHHHHHHHHHHhcCcccccc----hHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC-
Q 005727 206 ----A---SPDEFTRLTAITWINEFVKLGGDQLVPY----YADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD- 273 (680)
Q Consensus 206 ----~---s~d~~irl~Al~WL~e~~~l~~~~l~pf----Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~- 273 (680)
. +.-|+.|..=..+++.+..-+-..+... +..++..++-+..+++.+|.+.+.+...++++-+.+..+
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~ 204 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAA 204 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHH
Confidence 2 2238899988889998888777666554 445566666677889999999988888777776653111
Q ss_pred --C------CC-hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 274 --G------FD-VGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 274 --~------ld-l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
. .+ +..++.+++.-.....-......|.-+..+.+
T Consensus 205 ~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve 248 (321)
T 1w9c_A 205 AQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVE 248 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHH
Confidence 0 11 24566667766655554444444555555554
No 137
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=77.10 E-value=1.5e+02 Score=36.72 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=82.1
Q ss_pred cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 229 ~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
..+..|+|.++...-..+...++.+++-+......+.+...+ ..=.++++.|..+..+.+...--+|++.|..++.
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 355677777777777777777777777766655544444311 1115788888888776666666679999999999
Q ss_pred hChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 309 ~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
..|..+.++.. .+..+|..+.+=++.=+.+...+|+.++
T Consensus 468 ~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 468 LNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 99999988655 5566777777777666667788887766
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=76.60 E-value=16 Score=33.81 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=59.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc--hHHHHHHHHHhcCC------CChhHHHHHHHHHHHHHH
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSD------SSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~--Lp~~L~~Lf~lLsD------~~~dVR~~a~~~L~~fL~ 184 (680)
..-+..|..|+.+.||.+-..++..+..+.+-.+..+-.. =-+|++.|.+++++ ++++||+.+.+++..--.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3457778889999999999999999999888777655332 24688888889876 578999988888887777
Q ss_pred Hhhc
Q 005727 185 EIKN 188 (680)
Q Consensus 185 ei~~ 188 (680)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 6654
No 139
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=74.01 E-value=70 Score=32.43 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC-------ChHH-HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccch--HhHHHH
Q 005727 173 QQADSALWEFLQEIKNSPSV-------DYGR-MAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYY--ADILGA 241 (680)
Q Consensus 173 ~~a~~~L~~fL~ei~~~~~~-------d~~~-II~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~~l~pfL--p~LLp~ 241 (680)
+-+|++|.-| +.+..+|+. +++- +-|+|-...++. -|..|++++.-|+.+++....+.+.|+ .+++|.
T Consensus 71 nRVcnaLaLl-QcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALL-QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHH-HHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHH-HHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 4457777744 556555432 2222 223322111111 156999999999999999888888884 589999
Q ss_pred HhhhhcCCchhHHHHHHHHHH
Q 005727 242 ILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 242 LL~~Lsds~~eIR~~A~~~n~ 262 (680)
.++.|....+--|.+|.-..+
T Consensus 150 CLrime~GselSKtvAtfIlq 170 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQ 170 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHH
Confidence 999999887777777665554
No 140
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=73.68 E-value=8.5 Score=38.13 Aligned_cols=96 Identities=9% Similarity=0.180 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccch-HHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHH
Q 005727 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQH-FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRE 395 (680)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~~~~-F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~ 395 (680)
+..+..|..+|..+++.++..++++|+-+|- ++.- ++.++..+-.. ... .+ ..-|..
T Consensus 95 ~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~-~~~----~e---------------~~RF~~ 154 (233)
T 2f31_A 95 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER-AEM----DE---------------VERFQP 154 (233)
T ss_dssp SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH-HHH----HT---------------SCTTHH
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-HHh----CC---------------cchHHH
Confidence 3456888889988899999999999999883 2234 77787777642 110 01 112444
Q ss_pred HHHhhcccCChhHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q 005727 396 LSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (680)
Q Consensus 396 La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~ 435 (680)
+-+.+....+.++.....+..|.++-+.+++. +|..||+
T Consensus 155 lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-~R~~lR~ 193 (233)
T 2f31_A 155 LLDGLKSGTSIALKVGCLQLINALITPAEELD-FRVHIRS 193 (233)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-HHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-HHHHHHH
Confidence 44555556778898888888888887766554 5777776
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=73.13 E-value=1.2e+02 Score=33.49 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=87.8
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchH------HHHHHHHHhcCC--CChhHHHHHHHHHHHHHHHhh
Q 005727 117 PLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLP------DFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 117 P~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp------~~L~~Lf~lLsD--~~~dVR~~a~~~L~~fL~ei~ 187 (680)
+.|.+-+. +....|-+.++..+.++.+..+.+-...++ ..++.|-.+-.. .++|+...-..+.+.+-+.++
T Consensus 274 ~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 274 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44444333 456788888888888888766322111222 222322222222 577777665444444444443
Q ss_pred cCC-------------------CC--------------ChHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHH
Q 005727 188 NSP-------------------SV--------------DYGRMAEILVQRAA----------SPDEFTRLTAITWINEFV 224 (680)
Q Consensus 188 ~~~-------------------~~--------------d~~~II~iLl~~~~----------s~d~~irl~Al~WL~e~~ 224 (680)
.-. +. +=-+++..|+.-+. +.|+.+-..||.=|++|+
T Consensus 354 ~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv 433 (480)
T 1ho8_A 354 ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 433 (480)
T ss_dssp TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence 321 00 11235555555544 246778888999999999
Q ss_pred HhcCccc--ccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 225 KLGGDQL--VPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 225 ~l~~~~l--~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
+..|..- +.-+ +.=..++..|.+++++||..|..|.+.+|.
T Consensus 434 r~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 434 ELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9876541 1111 235678889999999999999998887653
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.36 E-value=14 Score=36.15 Aligned_cols=78 Identities=10% Similarity=0.113 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
..-+..|..++...||.+...++..+..+.+-.+..+-..+ -+|++.|.+++.+ ++.+||+.+.+.+..-...++..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 34466677889999999999999999988877765443222 2367777666654 57899998888888887777654
Q ss_pred C
Q 005727 190 P 190 (680)
Q Consensus 190 ~ 190 (680)
+
T Consensus 121 ~ 121 (220)
T 1dvp_A 121 D 121 (220)
T ss_dssp S
T ss_pred h
Confidence 3
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=72.10 E-value=23 Score=32.61 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=58.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHh
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD------~~~dVR~~a~~~L~~fL~ei 186 (680)
-+..|..|+.+.||.+-..++..+..+.+-.+..+...+ -+|++.|.+++.+ ++++||+.+.+++..--..+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 356677888999999999999999999888776654333 4888899999875 47899998877777776665
Q ss_pred hc
Q 005727 187 KN 188 (680)
Q Consensus 187 ~~ 188 (680)
+.
T Consensus 119 ~~ 120 (148)
T 1mhq_A 119 PE 120 (148)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 144
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=67.20 E-value=35 Score=31.62 Aligned_cols=76 Identities=8% Similarity=0.105 Sum_probs=56.9
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHH-HHHhcC---CCChhHHHHHHHHHHHHHHHh
Q 005727 114 EFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDG-LFNMLS---DSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 114 ~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~-Lf~lLs---D~~~dVR~~a~~~L~~fL~ei 186 (680)
.-+..|..|+. ..||.+...++..+..+.+-.+..+...+ -+|++. |.+++. +++..||+.+.+++..--..+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 34566778887 58999999999999999888776655433 357777 677774 456789998888888887777
Q ss_pred hcC
Q 005727 187 KNS 189 (680)
Q Consensus 187 ~~~ 189 (680)
+..
T Consensus 133 ~~~ 135 (157)
T 1elk_A 133 RSS 135 (157)
T ss_dssp TTC
T ss_pred CCC
Confidence 643
No 145
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=62.35 E-value=2.7e+02 Score=33.61 Aligned_cols=168 Identities=12% Similarity=0.109 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHHHHHHhhcCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005727 155 DFLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (680)
Q Consensus 155 ~~L~~Lf~lLsD----~~~dVR~~a~~~L~~fL~ei~~~~----~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l 226 (680)
+.++.++.++.+ .++.+|+.+.-+++.+++...... .-.++++.+.+.+.+...+++-+..++..|+.+
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~--- 467 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--- 467 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc---
Confidence 455566666655 567899998889999988765431 123788888888888888877777777777754
Q ss_pred cCcccccchHhHHHHHhhhhcC------C-chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhc--CCCcHHHHH
Q 005727 227 GGDQLVPYYADILGAILPCISD------K-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRI 297 (680)
Q Consensus 227 ~~~~l~pfLp~LLp~LL~~Lsd------s-~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L--~~~~~~tR~ 297 (680)
+ .|..++.+.+++.. + ...+|..|..+.. ++.. .+-..+-+++.+.+ ..++.++|+
T Consensus 468 g-------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr---~~~~-----~~p~~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 468 G-------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALR---NIAK-----RDPRKVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp T-------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTT---TGGG-----TCHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred C-------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHH---Hhhh-----hchHHHHHHHHHHhcCCCCChHHHH
Confidence 2 25667777777642 1 3467777766543 2211 11234567777777 456788999
Q ss_pred HHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhh
Q 005727 298 EALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 298 aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L-sD~s~eV~~~al~lLa~Is~ 349 (680)
+|+.-| .+.+|.. .++..+...+ .|++.+|.+-+...|..+++
T Consensus 533 aA~~~L---m~t~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 533 RSCIVF---FESKPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHH---HHTCCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH---HHHCcCH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 987655 3444322 2233333333 46789999888888888884
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=61.30 E-value=71 Score=29.40 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=55.7
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD------~s~eV~~~al~lLa~Is 348 (680)
...+..|...+.+.+..+.+.||..|-.+...|+..+... ..+++..|.+.+++ ..+.|+.+.++++..-+
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999876332 23455667788875 46789888887766554
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.41 E-value=29 Score=31.61 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
...+..|...+.+.+..+.+.||..|-.+...|+..+...+ .+.+..|.+.++..++.|+.+.+.++..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 56778899999998888999999999999999988765221 233334444444567899998887766544
No 148
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=59.35 E-value=71 Score=31.00 Aligned_cols=176 Identities=9% Similarity=-0.063 Sum_probs=96.8
Q ss_pred chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 005727 146 DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (680)
Q Consensus 146 ~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~ 225 (680)
+.+-..++..++++-+.+++=..|++|+.+-... ++... ..-..-...+....+++..|.|..|+.++...-.
T Consensus 12 d~~~a~~~~~y~k~~~~flGV~~P~lR~laK~~~----k~~~~---~~~~~~~~~~~~L~~s~~~E~r~la~~~l~~~~~ 84 (220)
T 2b6c_A 12 NPETAAKMSAYMKHQFVFAGIPAPERQALSKQLL----KESHT---WPKEKLCQEIEAYYQKTEREYQYVAIDLALQNVQ 84 (220)
T ss_dssp CHHHHHHHHHHTTTSSCCCCCCHHHHHHHTHHHH----HHHTT---SCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGG
T ss_pred CHHHHHHHHHHcCCCCeeeCCChHHHHHHHHHHH----HHhcc---CcccchHHHHHHHHcCchhHHHHHHHHHHHHHHh
Confidence 3333444444444445666767788888765432 22100 0111111333333455677888888888864321
Q ss_pred hcCcccccchHhHHHHHhhhhcC-CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005727 226 LGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIS 304 (680)
Q Consensus 226 l~~~~l~pfLp~LLp~LL~~Lsd-s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~ 304 (680)
-. .++.++.+-..+.+ ++=++-+....+.+.+...- -+.+.+.+.+-..+++.-+|.+|+.-+.
T Consensus 85 ~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~--------~~~~~~~i~~W~~s~~~w~rR~ai~~~l 149 (220)
T 2b6c_A 85 RF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH--------LTELPTIFALFYGAENFWNRRVALNLQL 149 (220)
T ss_dssp GC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS--------GGGHHHHHHHHTTCSSHHHHHHHHHTTT
T ss_pred hC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC--------hHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 23334333333322 22233333223344332220 1346677888888888887777765321
Q ss_pred HHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 305 TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 305 ~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
+..-..+.+.+++.+-..+.|++.-|+..+-|.|..++.
T Consensus 150 ------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 150 ------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp ------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred ------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 111124556677777778899999999999999999995
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=58.21 E-value=19 Score=33.10 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC---c--------hhHHHHHHHHHH
Q 005727 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK---E--------EKIRVVARETNE 262 (680)
Q Consensus 194 ~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds---~--------~eIR~~A~~~n~ 262 (680)
+..|+++|..++++.++.++..|+.-|.-++.-+.+.++..+-+=+..|-.+..+. + ..||+.|.++..
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999888888777766666666655555432 1 358888877765
Q ss_pred HH
Q 005727 263 EL 264 (680)
Q Consensus 263 ~L 264 (680)
.+
T Consensus 127 ll 128 (140)
T 1vdy_A 127 AI 128 (140)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.95 E-value=34 Score=32.30 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=56.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHH
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD------~~~dVR~~a~~~L~~fL~e 185 (680)
.-+..|..++...||.+...++..+..+.+-.+..+...+ -+|++.|.+++.. .+++||+.+.+++..--..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999999888775554322 4678888888863 4679999888877777766
Q ss_pred hh
Q 005727 186 IK 187 (680)
Q Consensus 186 i~ 187 (680)
++
T Consensus 130 f~ 131 (171)
T 1juq_A 130 LP 131 (171)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=56.71 E-value=1e+02 Score=28.15 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=56.0
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD------~s~eV~~~al~lLa~Is 348 (680)
...+..|...+.+.+..+.+.||..|-.+...|+..+... ..+++..|.+.+++ ..++|+.+.++++..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999999877433 24566677888775 36789998887666544
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.87 E-value=43 Score=32.92 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=56.3
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc--hHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhc
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~--Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
-..-+..|..++...||.+...++..+..+.+-.+..+... =-+|++.|.+++.. ++++||+.+.+++..--..++.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 34557788899999999999999999998877666443221 23556666666643 6788999888888877777755
Q ss_pred C
Q 005727 189 S 189 (680)
Q Consensus 189 ~ 189 (680)
.
T Consensus 123 ~ 123 (226)
T 3zyq_A 123 E 123 (226)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=53.47 E-value=55 Score=32.09 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch
Q 005727 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (680)
Q Consensus 156 ~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL 235 (680)
.++.+...+.|.+.=+|+.+..++ +. .....|...+.+++...+.+++..||...--|++++..-.++.+.+|+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~---l~---~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ---LK---YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT---TT---CGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---HH---HHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 445566788888888888775442 21 112347788888888899999999999777778777666666666665
Q ss_pred H
Q 005727 236 A 236 (680)
Q Consensus 236 p 236 (680)
.
T Consensus 206 ~ 206 (232)
T 3jxy_A 206 Q 206 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 154
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.52 E-value=50 Score=30.86 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=51.1
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD-~s~eV~~~al~lLa~Is 348 (680)
...+..|.+.+.+.+..+.+.||..|-.+...|+..+...+ .+++..|.+.++. .++.|+.++++++..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999988665221 2233344444443 46789888887655443
No 155
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.62 E-value=1.3e+02 Score=28.10 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=54.5
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD------~s~eV~~~al~lLa~Is 348 (680)
...+..|.+.+.+.+..+...||..|-.+...|+..+... ..+++..|.+.++. ..++|+.++++++..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999876532 23455566666652 35789999888766554
No 156
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.05 E-value=2e+02 Score=30.75 Aligned_cols=184 Identities=17% Similarity=0.259 Sum_probs=102.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d 193 (680)
.|+-.|.+.+.++||+=|.++.+.+..+-. -..+-.+-+|++..+.+-+|+-+.. .+..
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~-------------------Kf~~~R~~Irk~i~nif~~fiye~e--~~~G 232 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYG-------------------KFLGLRAYIRKQINNIFYRFIYETE--HHNG 232 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-------------------HCGGGHHHHHHHHHHHHHHHHTSSC--CCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhccC--CCCC
Confidence 588899999999999999998887765432 1112234567776666666665432 2345
Q ss_pred hHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhc
Q 005727 194 YGRMAEILVQRAA---SP-DEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (680)
Q Consensus 194 ~~~II~iLl~~~~---s~-d~~irl~Al~WL~e~~~l~-~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v 268 (680)
+.++++++-.-++ .| .++-+.. +.+.++-+- ...+..|-+++.-.+...+. .++.+
T Consensus 233 IaeLLeilgsIIngfa~PLKeehk~F---l~~vLlPLhk~~~l~~y~~qL~ycv~qf~e-KDp~L--------------- 293 (392)
T 2jak_A 233 IAELLEILGSIINGFALPLKEEHKIF---LLKVLLPLHKVKSLSVYHPQLAYCVVQFLE-KDSTL--------------- 293 (392)
T ss_dssp HHHHHHHHHHHHHTCCSSCCHHHHHH---HHHTTGGGGTSGGGGGTHHHHHHHHHHHHH-HCGGG---------------
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHH---HHHHhHhhccCCcHHHhHHHHHHHHHHHHh-cCchh---------------
Confidence 6777777644333 22 2443332 223222222 12233333333333222221 11111
Q ss_pred cCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-hhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (680)
Q Consensus 269 ~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p-~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa 345 (680)
.+.++..|.++-=-.+..-.+.-|.-+..+.+..+ +++......+|..+-+|++.++-.|...|+.+|.
T Consensus 294 --------~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 294 --------TEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp --------HHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred --------HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 12233333333222222233455566777777764 4567788999999999999999999999887664
No 157
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.33 E-value=38 Score=31.07 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=48.6
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH---HHHHHH--HhcCCC------ChhHHHHHHHHHH
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD---FLDGLF--NMLSDS------SHEIRQQADSALW 180 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~---~L~~Lf--~lLsD~------~~dVR~~a~~~L~ 180 (680)
...+++.|.+|+.+.+|.++.-++..|..+.......+...+=. +++.+. +-.-|+ ...||..|.+++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47799999999999999999999999999987666554332222 222222 222232 2579999887766
Q ss_pred HH
Q 005727 181 EF 182 (680)
Q Consensus 181 ~f 182 (680)
.+
T Consensus 127 ll 128 (140)
T 1vdy_A 127 AI 128 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 158
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=43.47 E-value=1.5e+02 Score=26.05 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=64.9
Q ss_pred hHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh--
Q 005727 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT-- 312 (680)
Q Consensus 235 Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~-- 312 (680)
+..-+...|..|..+.+.|...+.=+... .-..+.++..+.+.+.......|+..+=.+-.+...+..
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~ 75 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN----------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKN 75 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccC
Confidence 34455566777777777777766555431 112478899999999888888899988777777777633
Q ss_pred --hHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 005727 313 --EVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHA 345 (680)
Q Consensus 313 --~~~~~l~~l~p~LL~~LsD~s~-eV~~~al~lLa 345 (680)
.+.+.+...+|.++....|++. ..+.+.+.+|.
T Consensus 76 ~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 76 AIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWE 111 (132)
T ss_dssp CTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 4555566667777776666542 22224444444
No 159
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=41.52 E-value=3.3e+02 Score=28.48 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhc-cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTE-SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~e-s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
+..|.+.+.+.+.|..+=+ .+|..+..- +.. .+-.+-+.||..+...+.+.++.|-+.+++.+.++....+....-.
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv 240 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLF 240 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHH
Confidence 5566677778888887766 555444321 000 0111235578888888888888888899999988876554222111
Q ss_pred hHH-----------HHHHHHHhcC---CCChhHHHHHHHHHHHHHHHh
Q 005727 153 LPD-----------FLDGLFNMLS---DSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 153 Lp~-----------~L~~Lf~lLs---D~~~dVR~~a~~~L~~fL~ei 186 (680)
.-. .++.|.+.|. ..+.++...|-.+++.++...
T Consensus 241 ~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 241 IRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC
Confidence 111 1445666775 468888888888888777644
No 160
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=41.42 E-value=2.2e+02 Score=29.89 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=62.8
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHhhcc--chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHH----------
Q 005727 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD---------- 102 (680)
Q Consensus 36 ~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~--~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkd---------- 102 (680)
.++....+.+.....||..|+.++..-..| ++.. -++.+.-+..+++..+.+|-+.| ++|-.++.-
T Consensus 164 ~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~ 242 (339)
T 3dad_A 164 CLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIR 242 (339)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHH
Confidence 445555677999999999998887533222 2222 36777888888888889998888 655443321
Q ss_pred Hhh----ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005727 103 IVT----ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL 141 (680)
Q Consensus 103 iv~----es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L 141 (680)
-++ +.+..+...++..|.+. ...|..+..+++..|+.+
T Consensus 243 av~~v~~~~~~~p~~~Lv~~L~~~-~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 243 AVNSVASTTGAPPWANLVSILEEK-NGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHTTT-TSCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHH
Confidence 111 11112233333333221 267888888888888844
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.08 E-value=2.7e+02 Score=26.79 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc------cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV------PYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~------pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
.-...+..|..+++++++.+++.|+.-+..++.-+|..|. .|+..+...+ +. ..++++|+.+.+....-..
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~-~~--~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL-ES--TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHH-HH--CSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHh-cC--CCcHHHHHHHHHHHHHHHH
Confidence 4556777778888999999999999999998888775442 3555554433 22 4467888777666655555
Q ss_pred hcc
Q 005727 267 IKA 269 (680)
Q Consensus 267 ~v~ 269 (680)
...
T Consensus 116 ~f~ 118 (220)
T 1dvp_A 116 AFR 118 (220)
T ss_dssp HTT
T ss_pred Hhc
Confidence 444
No 162
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=37.38 E-value=43 Score=38.66 Aligned_cols=46 Identities=28% Similarity=0.516 Sum_probs=35.8
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
+.+.-+.+|-..+ .+|.||++||+||... ++.++..|||.+++.|.
T Consensus 108 ~~~dALeLL~~~f--~~~~VR~yAV~~L~~~---~de~L~~YLlQLVQALK 153 (696)
T 2x6h_A 108 DVEDALELLSPTF--THPQVRKYAVSRLAQA---PDEDLLLYLLQLVQALK 153 (696)
T ss_dssp CHHHHHHHHSTTC--CCHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHhcccC--CCHHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHH
Confidence 3444455555444 6899999999999864 78999999999999774
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.68 E-value=1.3e+02 Score=27.71 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=52.2
Q ss_pred HhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHH-HHHhcC---CCCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDT-LLKALS---DPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~-LL~~Ls---D~s~eV~~~al~lLa~Is 348 (680)
...+..|...+. +.+..+...||..|-.+...|+..+...+ .+.+.. |++.++ ++...|+.++++++..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 567788999997 47888899999999999999988775421 234444 556664 455689888887666544
No 164
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=32.78 E-value=4e+02 Score=26.89 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----------cchHHH---H
Q 005727 293 EATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD----------LQHFRQ---L 357 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~----------~~~F~~---f 357 (680)
+-.|+++|..+|++.+....++..|+ .+++|..++.+.-.++.-...|.-.+.+|-.+ .+-|.. +
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~v 195 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMI 195 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHH
Confidence 55899999999999999888888874 46999999999988888777888777777632 233443 3
Q ss_pred HHHHHHhhccc--chhHHhHHHHHHHHHHhhcChhhHHHHHHHhh
Q 005727 358 VVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (680)
Q Consensus 358 m~~LL~lf~~d--~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL 400 (680)
+.+++..+.++ .+++ ..|||=--.+-...+.+..+..++
T Consensus 196 L~~mV~~l~~~ps~RLL----KhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 196 LGKMVLQLSKEPSARLL----KHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHHHTTTSCCHHHH----HHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCChHHH----HHHHHHHHHHhcCHHHHHHHHHhC
Confidence 33444433332 2222 346664444444445555555555
No 165
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=29.63 E-value=9e+02 Score=29.98 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=104.5
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCC--------------chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 123 MNVLNPYVRQFLVGWITVLDSVP--------------DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 123 i~~~np~vR~~avswI~~L~sip--------------~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
|++.+...|..+-..+..-.... ..-+-.|+|.++.-.=.++.-.++.||.-+..+-..+-+...
T Consensus 354 i~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd- 432 (1323)
T 3s4w_B 354 IYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD- 432 (1323)
T ss_dssp HHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC-
T ss_pred HHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc-
Confidence 35556666777766666544331 123456777777766677777888898877655444433221
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC-chhHHHHHHHHHHHHHHh
Q 005727 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAI 267 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~ 267 (680)
...=++|+..|+.++.+++..-..+|+.-+.+++...+..+.||-. .+.+||..+.+- ...||....- ...+. .
T Consensus 433 --~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~i-L~~la-f 507 (1323)
T 3s4w_B 433 --TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCI-LSTLA-F 507 (1323)
T ss_dssp --HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHH-HHHHH-H
T ss_pred --chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHH-HHHHH-c
Confidence 1123789999999987776655556888788888888888888755 677888888754 5788877433 22221 1
Q ss_pred ccCCCCCCCh-HhHHHHHHHhcCCCcHHHH
Q 005727 268 KADPADGFDV-GPILSIATRQLSSEWEATR 296 (680)
Q Consensus 268 v~~~~~~ldl-~~iL~vL~~~L~~~~~~tR 296 (680)
.......... +++-=++.+++.+.+...|
T Consensus 508 ~~~~~~~~~i~ddl~ivIRKQLs~~~~~~K 537 (1323)
T 3s4w_B 508 SQQPGTSNHIQDDMHLVIRKQLSSTVFKYK 537 (1323)
T ss_dssp HHCSSCCCHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCCCcchhhHHhHHHHHHHHHhCCchhhh
Confidence 1111111112 4455578889988886654
No 166
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=29.53 E-value=92 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhhcc-cCChhH
Q 005727 377 ALIIRRLCVLLDAERVYRELSTILEG-EADLDF 408 (680)
Q Consensus 377 ~~IIrqLc~~L~~e~Iy~~La~iL~~-~~Dl~F 408 (680)
..+.++||..|++..-++.|+..+.. ...++|
T Consensus 16 ~~~r~~L~~~LD~~~~W~~La~~i~~~~~~~ky 48 (113)
T 2a9i_A 16 VGILRKLSDFIDPQEGWKKLAVAIKKPSGDDRY 48 (113)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHHCBCTTSSBSS
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHcCccccCCC
Confidence 45789999999998899999988755 333555
No 167
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=28.22 E-value=2.1e+02 Score=25.10 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=48.1
Q ss_pred chHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005727 152 FLPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 152 ~Lp~~L~~Lf~lLsD--~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
-+-.||..|.++.+| .++||-..+.++...++. ..+..+++-.-|-..+++ -...
T Consensus 21 Kck~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~-----~~i~~EeFt~~Lq~~lns------------------~pqP 77 (114)
T 2p6v_A 21 XCXNFLSTLIXLASSGXQSTETAANVXELVQNLLD-----GXIEAEDFTSRLYRELNS------------------SPQP 77 (114)
T ss_dssp HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHTTC------------------CCCT
T ss_pred HHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHcC------------------CCCc
Confidence 345688888888888 677776665554444442 122333333222222221 2345
Q ss_pred ccccchHhHHHHHhhhhcCCchhHHH
Q 005727 230 QLVPYYADILGAILPCISDKEEKIRV 255 (680)
Q Consensus 230 ~l~pfLp~LLp~LL~~Lsds~~eIR~ 255 (680)
.++||+-+-+|.+-..+.+...-|+.
T Consensus 78 ~LvPFLK~sLP~LR~~l~~~~~~i~Q 103 (114)
T 2p6v_A 78 YLVPFLXRSLPALRQLTPDSAAFIQQ 103 (114)
T ss_dssp THHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred chHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 68899999999998888776554443
No 168
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.77 E-value=1.9e+02 Score=28.20 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=51.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~Ls-D~s~eV~~~al~lLa~Is 348 (680)
-...+.+|.+.+.+.+..+.+.||..|-.+...|+..+... ..+.+..|.+.++ ...++|+.++++++..-+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999998865322 1122223333332 346788888888666544
No 169
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.35 E-value=1.4e+02 Score=27.52 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=53.4
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchH--HHHHH-HHHhcCCC---ChhHHHHHHHHHHHHHHHhh
Q 005727 115 FIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSDS---SHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 115 fIP~L~e~i~~-~np~vR~~avswI~~L~sip~~~Li~~Lp--~~L~~-Lf~lLsD~---~~dVR~~a~~~L~~fL~ei~ 187 (680)
-+..|..|+.. .|+.+-..++..+..+.+-.+..+-..+- +|+.. |.+++++. ..+||+.+.+++..--..++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45666777764 68888888999999888878776655554 67765 77777763 35799888777777766565
Q ss_pred cC
Q 005727 188 NS 189 (680)
Q Consensus 188 ~~ 189 (680)
..
T Consensus 134 ~~ 135 (152)
T 3rru_A 134 GG 135 (152)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 170
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.99 E-value=4.8e+02 Score=25.65 Aligned_cols=113 Identities=28% Similarity=0.394 Sum_probs=74.8
Q ss_pred hHHHHHHHhhccc---------CChhHHHHHHHHHHHHH----hchHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCh
Q 005727 391 RVYRELSTILEGE---------ADLDFACTMVQALNLIL----LTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSP 457 (680)
Q Consensus 391 ~Iy~~La~iL~~~---------~Dl~F~~~mVq~Ln~iL----LTa~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~ 457 (680)
+|+.-|+.|-+.+ +.+.-+...+-+++.|- ++.....+.|+.++
T Consensus 61 ri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~~~l~e~i~~llk----------------------- 117 (235)
T 3bu8_A 61 RVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVK----------------------- 117 (235)
T ss_dssp HHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH-----------------------
Confidence 4777788876542 22344666777777775 22333455566665
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHhHHHHHHhhccchhHHHHHHhcC--CCCCchHHHHHHHHHhhhccc
Q 005727 458 MAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLE--PGRYTWLLKALYGLLMLLPQV 535 (680)
Q Consensus 458 v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~qid~LVqLlEsPif~~lRlqLLe--~~~~~~l~k~l~gllm~lpq~ 535 (680)
++|+..|+=...|+.|..+++.+-+ ++|.-.+||.-|+- ..|.|
T Consensus 118 ~qAV~VCiek~~f~kA~eiLkr~~~------------------~~~s~~kLr~kL~~II~~Kd~---------------- 163 (235)
T 3bu8_A 118 EAAVIICIKNKEFEKASKILKKHMS------------------KDPTTQKLRNDLLNIIREKNL---------------- 163 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHST------------------TCGGGHHHHHHHHHHHHHTCT----------------
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhc------------------CCCCchHHHHHHHHHHhccCc----------------
Confidence 6889999999999999999988743 45565778877763 23333
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhchhhHhHhh
Q 005727 536 SLLYLKIQAQLFCVFLLELHSFMFNLSRDTLMQQSAAFKILRT 578 (680)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~af~~l~~ 578 (680)
-|.|.-|.|-+++||-=.+|-.+..
T Consensus 164 ------------------~H~~lqnFSy~~~~~ki~~fve~~~ 188 (235)
T 3bu8_A 164 ------------------AHPVIQNFSYETFQQKMLRFLESHL 188 (235)
T ss_dssp ------------------TSHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred ------------------ccHHHHhccHHHHHHHHHHHHHHHh
Confidence 2566667777888776666655544
No 171
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=24.60 E-value=43 Score=38.11 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 126 ~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
.++.||.+||+|+. ..++.++..||+.+.+.|.
T Consensus 107 ~d~~VR~yAV~~L~---~~~D~eL~lYLlQLVQALK 139 (614)
T 3ls8_A 107 TNPTVRRYAVARLR---QADDEDLLMYLLQLVQALK 139 (614)
T ss_dssp CCHHHHHHHHHHHT---TSCHHHHHHTHHHHHHHGG
T ss_pred CCHHHHHHHHHHHH---hCChHHHHHHHHHHHHhhh
Confidence 67999999999985 5778899999999999884
No 172
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=23.19 E-value=6.6e+02 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=26.4
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~ 310 (680)
+..+..+..-+.+.+..+|..++..|.++....
T Consensus 99 ~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 99 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 456778888888888889999998888877654
No 173
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=22.80 E-value=6.1e+02 Score=25.73 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=68.8
Q ss_pred hhhHHHHhhccCC-CCHHHHHHHHHHHHHHHHhhcc--chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhc
Q 005727 31 QQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 31 ~~Iv~~VL~~l~D-~d~rVR~~A~eaL~nI~kv~~~--~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
..++..++..+.+ ..+.-|-.++..+-|......| -+...+++|++.+.....+++.++|-++ .++-++.--...+
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 3455556666653 3455677777777776543333 3446778899998888888899999887 5554443333332
Q ss_pred cccccHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC
Q 005727 107 SDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVP 145 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip 145 (680)
.+.-....++..+...+. ..++++-+-++-.++.|....
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 211011223333333332 457888888888888877653
No 174
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=21.68 E-value=4.2e+02 Score=28.58 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=84.2
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhhccchHHH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL-KALSDPSDEVVLLVLEVHACIAKDLQHFRQ 356 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL-~~LsD~s~eV~~~al~lLa~Is~~~~~F~~ 356 (680)
+.+...+...+.+ |+.|-.+++.+..++...+.. . ++..++ ..+.+..+..+..++++++...++..|-+.
T Consensus 227 ~~l~~~~~kil~~--WP~~FPaLDLLRl~v~~p~~~--~----~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ 298 (425)
T 3pst_A 227 ELLLSFANTIRSN--WEIKTPAYDIVRLIVKKLPYS--S----DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVK 298 (425)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHGGGCSCG--G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHHHh--CCcccHHHHHHHHHHcCCchH--H----HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHH
Confidence 3344444454544 336888999988888776421 2 222233 334445677788999999999876665444
Q ss_pred HH------HHHHHhhc--------ccchhHHhHHHHHHHHHHhhcChh----hHHHHHHHhhc-----c---cCChhHHH
Q 005727 357 LV------VFLVHNFR--------VDNSLLEKRGALIIRRLCVLLDAE----RVYRELSTILE-----G---EADLDFAC 410 (680)
Q Consensus 357 fm------~~LL~lf~--------~d~~lLe~rg~~IIrqLc~~L~~e----~Iy~~La~iL~-----~---~~Dl~F~~ 410 (680)
+| ..+++.+. ...+.+....+..+-+++..+..+ .+...+.+++. . .+|-+-+.
T Consensus 299 ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~y 378 (425)
T 3pst_A 299 LLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAY 378 (425)
T ss_dssp HHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHH
T ss_pred HhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHH
Confidence 33 23343331 124455556666777777764321 23445555555 1 35777778
Q ss_pred HHHHHHHHHHhchHHHH
Q 005727 411 TMVQALNLILLTSSELS 427 (680)
Q Consensus 411 ~mVq~Ln~iLLTa~EL~ 427 (680)
++...|-+++..+++..
T Consensus 379 RlLVALGtLv~~~~~~~ 395 (425)
T 3pst_A 379 RLTVAYGNLATVEPTLR 395 (425)
T ss_dssp HHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 88888888886665544
No 175
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=21.58 E-value=45 Score=39.96 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=32.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
-+.+|-..+ .++.||++||.|+. +.++.++..|||.+.+.|.
T Consensus 486 ALeLL~~~f--~d~~VR~yAV~~L~---~~~d~~l~~YL~QLVQaLk 527 (961)
T 1e7u_A 486 TMQLLDCNF--SDENVRAIAVQKLE---SLEDDDVLHYLLQLVQAVK 527 (961)
T ss_dssp HHHTTSTTC--CCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHGG
T ss_pred HHHhcCCcC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 344443333 57999999999985 6788999999999998774
No 176
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=21.54 E-value=3.5e+02 Score=27.96 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--hcCCChhHHHHHHHHHHHHH---------HHhh-ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 005727 71 FNQIFDALCKL--SADSDANVQSAAHLLDRLVK---------DIVT-ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWI 138 (680)
Q Consensus 71 f~eIfd~L~kL--~aD~d~~Vr~gA~~Ldrllk---------div~-es~~f~L~~fIP~L~e~i~~~np~vR~~avswI 138 (680)
|.++.+.+-+. +..+|...=..| ||.+.+ .|.. +.+ .+.-|. +.....+.+|+.+-..|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~a--LD~L~ElSHDi~~G~KI~~~ef~------lL~nL~-~~~~~~~~~rE~aarII 94 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDS--FDRIMEFAHDYKHGYKIITHEFA------LLANLS-LNENLPLTLRELSTRVI 94 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHH--HHHHGGGTTSHHHHHHHHHHHHH------HHHHHH-HCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHH--HHHHHHhhhhHHhhhHHHhCcHH------HHHHHH-hhccCChhHHHHHHHHH
Q ss_pred H-HhhcCCc--hhhhhchHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC
Q 005727 139 T-VLDSVPD--IDMLGFLPDFLDGLFNMLSD-------SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (680)
Q Consensus 139 ~-~L~sip~--~~Li~~Lp~~L~~Lf~lLsD-------~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~ 208 (680)
+ .|-+-|+ ..+....|.|+..+|.-|.+ ...-+.+.--.++..+++.-..-...+++.+++++-.. ..
T Consensus 95 ~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~~~--~~ 172 (315)
T 3qml_C 95 TSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYERN--NK 172 (315)
T ss_dssp HHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHHHT--TT
T ss_pred HHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHccC--CC
Q ss_pred CHHHHHHHHHHHHHH
Q 005727 209 DEFTRLTAITWINEF 223 (680)
Q Consensus 209 d~~irl~Al~WL~e~ 223 (680)
++.+|..+++.+..+
T Consensus 173 d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 173 DKQLQIKVLELISKI 187 (315)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
No 177
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=21.23 E-value=8.3e+02 Score=26.68 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=49.7
Q ss_pred HhHHHHHHHhcCC----------CcHHHHHHHHHHHHHHHhhChhhHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 278 GPILSIATRQLSS----------EWEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (680)
Q Consensus 278 ~~iL~vL~~~L~~----------~~~~tR~aaL~WL~~L~~~~p~~~~--~~l~~l~p~LL~~LsD~s~eV~~~al~lLa 345 (680)
-+++..|.+.|.+ .+..+---|..=+|.+++.+|++-. .-+ +.=..+++.+++++++|+..|+.++.
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3677777777752 1233444455778999999998743 222 23567889999999999999998887
Q ss_pred HHh
Q 005727 346 CIA 348 (680)
Q Consensus 346 ~Is 348 (680)
++-
T Consensus 473 klm 475 (480)
T 1ho8_A 473 AII 475 (480)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 178
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.78 E-value=1.6e+02 Score=26.31 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhhcc-cCChhH
Q 005727 377 ALIIRRLCVLLDAERVYRELSTILEG-EADLDF 408 (680)
Q Consensus 377 ~~IIrqLc~~L~~e~Iy~~La~iL~~-~~Dl~F 408 (680)
..+.++||..|++..-++.||..+.. ....+|
T Consensus 23 ~~vr~~L~~~LD~~~~Wr~LA~~i~~~~~~~ry 55 (127)
T 1wh4_A 23 VGILRKLSDFIDPQEGWKKLAVAIKKPSGDDRY 55 (127)
T ss_dssp HHHHHHHHHHHSSTTHHHHHHHHCBCTTCCBSS
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHccccccCCc
Confidence 45789999999998899999998865 233444
No 179
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=20.00 E-value=3.7e+02 Score=24.30 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=53.6
Q ss_pred HHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Q 005727 139 TVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT 218 (680)
Q Consensus 139 ~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~ 218 (680)
..+..+....+.+++| .|+..+.|.|=-|-..+...|..+-. .+++.+..-+++.|+.=+ .
T Consensus 19 ~~L~~~~~~~i~p~lp----~LL~WLQD~NWPvA~~i~~~L~~~~~-----------~l~p~I~~vl~s~D~~W~----y 79 (134)
T 3ut4_A 19 DQLCKLIDNEIEPIIF----DLLKWLQDYNWPIAKDILPVVVLHQS-----------IAMPHILTILQGNDIMWK----Y 79 (134)
T ss_dssp HHHTTCCHHHHHHHHH----HHHGGGSCTTSTTHHHHHHHHHHTHH-----------HHHHHHHHHHHSSCHHHH----H
T ss_pred HHHHhCCHHHHHHHHH----HHHHHHhcCCCccHHHHHHHHHHccH-----------hhHHHHHHHHHcCChHHH----H
Confidence 3455566666666666 55559999886666555555554433 344444444466665422 2
Q ss_pred HHHHHHHhcCcccccchHhHHHHHhhhhcC-----CchhHHHHHHHHHHH
Q 005727 219 WINEFVKLGGDQLVPYYADILGAILPCISD-----KEEKIRVVARETNEE 263 (680)
Q Consensus 219 WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsd-----s~~eIR~~A~~~n~~ 263 (680)
|+-.++ .+..=..-...+.|.+...... ...++.+.|.+....
T Consensus 80 wil~~l--v~~~~~~~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 80 WVIKLM--IPYLIYPNKQLVKSELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HHHHHH--GGGCCHHHHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHH--HHcCCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 443221 1111112233444444444433 245677777776653
Done!