Query 005728
Match_columns 680
No_of_seqs 480 out of 2510
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2082 K+/Cl- cotransporter K 100.0 3E-132 6E-137 1068.7 45.6 667 6-680 342-1075(1075)
2 TIGR00930 2a30 K-Cl cotranspor 100.0 5E-127 1E-131 1127.9 66.9 624 27-680 257-953 (953)
3 KOG1288 Amino acid transporter 100.0 6E-100 1E-104 814.6 41.6 624 11-673 230-939 (945)
4 KOG2083 Na+/K+ symporter [Inor 100.0 1.5E-58 3.2E-63 495.1 20.5 419 26-469 200-634 (643)
5 TIGR00906 2A0303 cationic amin 100.0 3.7E-27 8.1E-32 268.3 25.5 234 61-294 230-556 (557)
6 PRK11357 frlA putative fructos 99.9 3.2E-25 6.9E-30 247.3 22.7 229 61-292 194-438 (445)
7 TIGR00908 2A0305 ethanolamine 99.9 1E-24 2.2E-29 243.0 25.6 229 61-292 190-433 (442)
8 PRK10655 potE putrescine trans 99.9 1.7E-24 3.6E-29 241.0 26.0 232 61-296 188-435 (438)
9 PRK10644 arginine:agmatin anti 99.9 3.5E-24 7.6E-29 238.9 26.2 231 61-296 190-435 (445)
10 TIGR00911 2A0308 L-type amino 99.9 1.6E-24 3.5E-29 245.1 23.8 223 61-287 234-468 (501)
11 TIGR00909 2A0306 amino acid tr 99.9 2.9E-24 6.2E-29 238.5 25.0 225 62-287 195-428 (429)
12 PF00324 AA_permease: Amino ac 99.9 9.8E-27 2.1E-31 261.8 5.2 260 60-331 198-477 (478)
13 PRK10435 cadB lysine/cadaverin 99.9 4.8E-24 1E-28 237.0 25.7 227 61-295 186-430 (435)
14 TIGR00905 2A0302 transporter, 99.9 8.9E-24 1.9E-28 237.3 27.0 227 61-293 198-440 (473)
15 KOG1287 Amino acid transporter 99.9 1.5E-24 3.3E-29 234.1 18.5 232 63-297 205-448 (479)
16 PRK15049 L-asparagine permease 99.9 7.6E-24 1.6E-28 238.8 24.7 207 61-268 219-439 (499)
17 PRK11387 S-methylmethionine tr 99.9 6.2E-24 1.4E-28 238.4 23.4 228 62-290 206-457 (471)
18 PRK11021 putative transporter; 99.9 1.3E-23 2.8E-28 231.9 25.5 218 61-290 176-403 (410)
19 TIGR00913 2A0310 amino acid pe 99.9 1E-23 2.2E-28 237.4 24.6 236 61-297 196-469 (478)
20 PRK10197 gamma-aminobutyrate t 99.9 1.1E-23 2.4E-28 234.7 24.2 236 61-297 180-437 (446)
21 COG0833 LysP Amino acid transp 99.9 2.5E-23 5.4E-28 225.4 21.6 208 61-269 233-464 (541)
22 PRK10836 lysine transporter; P 99.9 4.7E-23 1E-27 232.4 24.8 208 61-269 204-435 (489)
23 PRK10580 proY putative proline 99.9 6.7E-23 1.5E-27 229.3 25.2 228 61-289 198-447 (457)
24 PRK10746 putative transport pr 99.9 7.7E-23 1.7E-27 228.6 25.5 231 61-292 199-452 (461)
25 PRK10249 phenylalanine transpo 99.9 5.8E-23 1.3E-27 229.6 23.9 207 61-268 208-427 (458)
26 PRK11049 D-alanine/D-serine/gl 99.9 9.8E-23 2.1E-27 228.6 24.6 204 61-266 210-429 (469)
27 COG1113 AnsP Gamma-aminobutyra 99.9 1.6E-23 3.5E-28 222.5 17.2 258 23-291 173-452 (462)
28 TIGR01773 GABAperm gamma-amino 99.9 1E-22 2.2E-27 227.6 23.7 205 61-266 200-418 (452)
29 TIGR03810 arg_ornith_anti argi 99.9 2.8E-22 6.1E-27 224.9 27.2 224 60-288 193-430 (468)
30 PRK10238 aromatic amino acid t 99.9 1.9E-22 4.1E-27 225.4 24.1 208 61-269 199-419 (456)
31 KOG1286 Amino acid transporter 99.9 7E-23 1.5E-27 229.3 19.3 207 61-268 231-458 (554)
32 TIGR00910 2A0307_GadC glutamat 99.9 9.9E-22 2.2E-26 221.9 24.4 202 64-267 196-421 (507)
33 TIGR03813 put_Glu_GABA_T putat 99.9 1.6E-21 3.5E-26 219.1 24.5 197 70-268 202-419 (474)
34 TIGR00907 2A0304 amino acid pe 99.9 2.9E-21 6.2E-26 217.7 23.1 204 63-268 218-439 (482)
35 PRK15238 inner membrane transp 99.9 4.6E-20 1E-24 208.4 24.8 200 62-264 211-451 (496)
36 TIGR03428 ureacarb_perm permea 99.9 3.9E-20 8.5E-25 207.9 23.4 203 62-264 213-435 (475)
37 COG0531 PotE Amino acid transp 99.8 8.6E-19 1.9E-23 196.4 25.2 188 62-250 201-400 (466)
38 PF13520 AA_permease_2: Amino 99.8 4.8E-18 1E-22 188.5 22.7 198 63-266 189-400 (426)
39 KOG1289 Amino acid transporter 99.8 7.7E-19 1.7E-23 190.2 15.7 175 62-236 252-442 (550)
40 TIGR00837 araaP aromatic amino 98.8 8.9E-08 1.9E-12 104.8 16.4 181 62-256 178-375 (381)
41 TIGR00796 livcs branched-chain 98.4 1.3E-05 2.8E-10 87.0 19.2 172 63-250 175-365 (378)
42 TIGR00912 2A0309 spore germina 96.7 0.058 1.3E-06 58.5 16.6 106 63-169 179-294 (359)
43 PF13906 AA_permease_C: C-term 96.6 0.0062 1.4E-07 46.1 5.5 46 247-292 1-50 (51)
44 PF03222 Trp_Tyr_perm: Tryptop 96.0 0.96 2.1E-05 49.8 21.2 108 61-168 183-302 (394)
45 COG0814 SdaC Amino acid permea 95.2 1.4 3.1E-05 48.8 19.4 62 61-122 192-255 (415)
46 PF02705 K_trans: K+ potassium 94.8 3.6 7.7E-05 46.7 20.8 157 65-228 204-367 (534)
47 PRK10483 tryptophan permease; 94.4 3.5 7.6E-05 45.5 19.4 107 63-169 193-311 (414)
48 PHA02764 hypothetical protein; 93.9 0.7 1.5E-05 48.2 11.6 144 63-235 182-329 (399)
49 TIGR00814 stp serine transport 93.8 2.9 6.3E-05 46.1 17.5 112 61-172 185-312 (397)
50 PLN03074 auxin influx permease 93.8 3.4 7.3E-05 46.7 18.3 51 61-112 232-282 (473)
51 PF01490 Aa_trans: Transmembra 93.7 0.033 7.2E-07 61.3 2.1 53 60-112 190-244 (409)
52 PRK15132 tyrosine transporter 93.6 9.7 0.00021 42.1 21.0 107 64-170 183-301 (403)
53 KOG1303 Amino acid transporter 93.2 1 2.2E-05 50.1 12.6 47 65-112 231-277 (437)
54 KOG2082 K+/Cl- cotransporter K 92.9 0.045 9.8E-07 62.4 1.4 59 619-679 944-1002(1075)
55 PTZ00206 amino acid transporte 92.8 0.99 2.2E-05 50.9 12.1 50 63-112 257-307 (467)
56 cd01987 USP_OKCHK USP domain i 92.6 1.6 3.5E-05 39.0 11.1 95 330-438 2-96 (124)
57 PRK09664 tryptophan permease T 92.3 15 0.00033 40.6 20.0 60 63-122 194-254 (415)
58 cd01988 Na_H_Antiporter_C The 91.9 3.8 8.3E-05 36.7 12.8 97 330-438 2-105 (132)
59 PRK11375 allantoin permease; P 91.1 30 0.00066 39.2 21.5 133 62-208 227-365 (484)
60 PLN00149 potassium transporter 90.7 5.7 0.00012 46.9 15.2 113 66-181 272-385 (779)
61 KOG1305 Amino acid transporter 89.6 13 0.00029 41.0 16.4 52 62-113 194-246 (411)
62 TIGR00794 kup potassium uptake 89.5 7.8 0.00017 45.3 15.0 110 66-181 242-352 (688)
63 KOG1304 Amino acid transporter 88.9 5.3 0.00012 44.3 12.6 54 61-115 240-297 (449)
64 PF05525 Branch_AA_trans: Bran 88.7 10 0.00022 42.2 14.6 40 131-170 266-305 (427)
65 PRK11017 codB cytosine permeas 87.7 49 0.0011 36.5 21.3 51 63-114 184-236 (404)
66 PLN00150 potassium ion transpo 87.0 8 0.00017 45.6 13.1 110 66-181 288-398 (779)
67 PLN00151 potassium transporter 86.9 10 0.00022 44.9 13.8 110 66-181 348-458 (852)
68 PLN00148 potassium transporter 85.9 13 0.00029 43.9 14.1 110 66-181 271-381 (785)
69 cd00293 USP_Like Usp: Universa 85.8 11 0.00023 33.1 10.9 95 330-437 2-103 (130)
70 COG1457 CodB Purine-cytosine p 84.6 73 0.0016 35.6 20.3 104 62-169 193-299 (442)
71 COG3949 Uncharacterized membra 81.1 44 0.00094 35.6 14.2 87 77-165 194-283 (349)
72 PRK10745 trkD potassium transp 80.9 20 0.00044 41.4 12.6 110 66-181 216-326 (622)
73 PF00582 Usp: Universal stress 80.0 34 0.00073 30.1 12.0 97 329-437 4-112 (140)
74 PRK15433 branched-chain amino 78.6 1.1E+02 0.0024 34.1 17.2 39 132-170 271-309 (439)
75 PF03845 Spore_permease: Spore 78.5 45 0.00097 35.4 14.1 107 62-169 175-290 (320)
76 PRK00701 manganese transport p 76.0 1.4E+02 0.003 33.4 19.7 30 135-164 303-332 (439)
77 TIGR02119 panF sodium/pantothe 74.2 1.6E+02 0.0034 33.2 17.7 83 83-166 257-345 (471)
78 PF01566 Nramp: Natural resist 71.5 37 0.00079 36.8 11.4 39 133-171 246-285 (358)
79 COG0733 Na+-dependent transpor 70.5 1.8E+02 0.0039 32.4 16.0 49 62-111 214-263 (439)
80 COG3158 Kup K+ transporter [In 69.9 59 0.0013 37.0 12.2 148 67-220 222-375 (627)
81 PRK13629 threonine/serine tran 69.3 2E+02 0.0043 32.3 17.1 111 63-173 210-348 (443)
82 cd01989 STK_N The N-terminal d 66.0 83 0.0018 28.6 11.1 95 330-436 2-112 (146)
83 PRK09442 panF sodium/panthothe 62.2 2.7E+02 0.0059 31.4 19.6 36 135-173 315-350 (483)
84 PRK10484 putative transporter; 59.0 3.2E+02 0.007 31.2 18.4 32 135-166 323-354 (523)
85 PRK15005 universal stress prot 56.9 1.5E+02 0.0033 26.7 11.0 96 329-435 4-115 (144)
86 PF04531 Phage_holin_1: Bacter 54.4 39 0.00085 28.5 5.9 66 242-307 3-80 (84)
87 COG1114 BrnQ Branched-chain am 49.7 4E+02 0.0087 29.5 19.8 36 133-168 270-305 (431)
88 PF02990 EMP70: Endomembrane p 48.0 4.3E+02 0.0093 30.3 15.0 27 212-238 368-394 (521)
89 PF10951 DUF2776: Protein of u 47.2 29 0.00064 35.9 4.7 27 243-269 280-308 (347)
90 PRK15118 universal stress glob 47.0 2.2E+02 0.0047 25.7 10.4 122 329-470 5-139 (144)
91 PRK11175 universal stress prot 45.2 1.4E+02 0.003 31.1 9.8 110 349-469 174-299 (305)
92 TIGR00813 sss transporter, SSS 44.4 2.8E+02 0.0061 30.4 12.6 33 134-166 289-321 (407)
93 PRK09982 universal stress prot 43.9 2.5E+02 0.0055 25.5 10.8 122 329-470 5-139 (142)
94 PF01235 Na_Ala_symp: Sodium:a 42.2 2.3E+02 0.0051 31.4 11.1 96 76-171 236-338 (416)
95 PLN03159 cation/H(+) antiporte 41.8 7.4E+02 0.016 30.3 32.5 119 396-522 544-668 (832)
96 TIGR00800 ncs1 NCS1 nucleoside 41.5 5.4E+02 0.012 28.6 16.2 49 61-110 206-255 (442)
97 PF14256 YwiC: YwiC-like prote 40.8 2.9E+02 0.0062 25.3 11.4 21 217-237 30-50 (129)
98 TIGR02121 Na_Pro_sym sodium/pr 40.7 5.8E+02 0.013 28.8 17.2 35 136-173 315-349 (487)
99 COG4025 Predicted membrane pro 40.6 2.4E+02 0.0053 28.5 9.7 18 161-178 54-71 (284)
100 PF11174 DUF2970: Protein of u 40.5 52 0.0011 25.5 4.1 44 65-111 2-45 (56)
101 TIGR00835 agcS amino acid carr 39.3 5.9E+02 0.013 28.4 14.8 94 77-170 264-364 (425)
102 TIGR02711 symport_actP cation/ 36.7 7.1E+02 0.015 28.7 18.0 23 88-111 287-309 (549)
103 COG3965 Predicted Co/Zn/Cd cat 35.4 4.2E+02 0.009 27.4 10.6 106 191-296 23-155 (314)
104 PRK10929 putative mechanosensi 32.4 1.1E+03 0.025 29.7 16.0 28 514-541 992-1019(1109)
105 TIGR02358 thia_cytX probable h 32.0 7.1E+02 0.015 27.2 21.3 84 81-171 192-276 (386)
106 COG5148 RPN10 26S proteasome r 31.9 2.2E+02 0.0049 27.7 7.7 67 324-407 104-171 (243)
107 COG1115 AlsT Na+/alanine sympo 31.0 7.3E+02 0.016 27.8 12.5 95 77-171 281-382 (452)
108 PF12794 MscS_TM: Mechanosensi 30.2 7.2E+02 0.016 26.7 17.1 31 81-111 28-62 (340)
109 PF05297 Herpes_LMP1: Herpesvi 30.0 17 0.00037 37.3 0.0 15 185-199 16-30 (381)
110 PF05297 Herpes_LMP1: Herpesvi 29.2 18 0.00039 37.2 0.0 11 279-289 176-186 (381)
111 PRK11371 hypothetical protein; 29.0 92 0.002 27.0 4.1 30 208-237 37-66 (126)
112 COG0659 SUL1 Sulfate permease 28.4 6.9E+02 0.015 28.9 12.6 42 186-227 318-359 (554)
113 PRK11175 universal stress prot 27.5 7E+02 0.015 25.7 17.8 169 330-522 6-198 (305)
114 COG4858 Uncharacterized membra 27.2 6E+02 0.013 24.9 11.7 19 186-204 89-112 (226)
115 PRK12488 acetate permease; Pro 26.7 1E+03 0.022 27.4 17.8 37 74-111 273-309 (549)
116 COG2271 UhpC Sugar phosphate p 24.7 1E+03 0.022 26.7 14.2 46 151-205 67-112 (448)
117 PF02990 EMP70: Endomembrane p 24.5 3.3E+02 0.0072 31.2 9.1 15 64-78 275-289 (521)
118 PRK10116 universal stress prot 24.3 5.1E+02 0.011 23.1 10.4 122 329-469 5-138 (142)
119 PRK09458 pspB phage shock prot 23.9 2.3E+02 0.0051 23.3 5.4 22 275-296 11-32 (75)
120 PRK10490 sensor protein KdpD; 23.6 5.9E+02 0.013 31.4 11.6 87 327-423 250-337 (895)
121 cd07388 MPP_Tt1561 Thermus the 23.3 2E+02 0.0042 29.1 6.2 45 630-674 30-74 (224)
122 COG3949 Uncharacterized membra 23.1 9.6E+02 0.021 25.8 15.4 69 101-169 40-109 (349)
123 COG0838 NuoA NADH:ubiquinone o 22.5 5.9E+02 0.013 23.2 9.3 16 282-297 105-120 (123)
124 PRK11281 hypothetical protein; 22.4 1.7E+03 0.036 28.3 16.3 21 520-540 1001-1021(1113)
125 TIGR00834 ae anion exchange pr 21.4 1.6E+03 0.034 27.7 16.5 17 62-78 596-612 (900)
126 PRK01021 lpxB lipid-A-disaccha 21.1 9E+02 0.02 28.3 11.5 37 386-423 299-335 (608)
No 1
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-132 Score=1068.69 Aligned_cols=667 Identities=42% Similarity=0.722 Sum_probs=583.9
Q ss_pred cccccchhhhHhhhhhhhhhhcccccccccccccccCCCcccCCC--------CCCCC------CCCcchhHHHHHHHHH
Q 005728 6 FLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNN--------AGIPD------PNGAVDWSFNALVGLF 71 (680)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~N~~~~~~~~~~--------~g~~~------~~g~~~~~f~~~~~i~ 71 (680)
+..++.|++|++. .++..+.||+|+.+++|.+|+||.|...+. .+.+. ..++..++|...++++
T Consensus 342 ~~~~~~c~~y~~~--nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIf 419 (1075)
T KOG2082|consen 342 NNDSATCDEYFSK--NNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIF 419 (1075)
T ss_pred CCCCccccccccc--ccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhh
Confidence 4567999999965 888999999999999999999999954321 11111 1345678999999999
Q ss_pred HHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccc----hhhH---hHhHHHHhhccchhHHHH
Q 005728 72 FPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT----REEL---LTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 72 f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~----~~~~---~~~~~~~~~~~~~~~~ii 144 (680)
|||+|||++++|+||++|||+|+||.|++.|++++..+|+..++++|++.. +|.. ..+.++.+.++||.+|++
T Consensus 420 FPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi 499 (1075)
T KOG2082|consen 420 FPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVI 499 (1075)
T ss_pred ccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceee
Confidence 999999999999999999999999999999999999999998898998876 4443 333556778899999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccccccc-CCCCchHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA-EGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLL 223 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~-k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~~l~ 223 (680)
.+|.++|++|++++++.++||+|||+|||+++|....++|. ++|+|.+|+++|.+||...+++++++.++++.++|||+
T Consensus 500 ~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLM 579 (1075)
T KOG2082|consen 500 VIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLM 579 (1075)
T ss_pred ehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987767665 57899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhH
Q 005728 224 CYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKS 303 (680)
Q Consensus 224 ~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~~iy~~~~~~~~~~~wg~~~~~ 303 (680)
+|.++|++|.+....+.|+|||+|||+||.++++|+.+|+++||..+|.++++++.++.++|.|+.||+.+++|||..++
T Consensus 580 CY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEykGAeKEWGDGiRG 659 (1075)
T KOG2082|consen 580 CYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYKGAEKEWGDGIRG 659 (1075)
T ss_pred HHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHH
Q 005728 304 AYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAK 383 (680)
Q Consensus 304 ~~~~~~~~~l~~l~~~~~~~k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~ 383 (680)
+.++.||++|+++++.++|+||||||+||+... .++..++++.|++|++|+| .|+|+.+++++++|++.+...+++
T Consensus 660 lsLtaArysLlrlEegpPH~KNWRPQlLVll~~---~~~~~vk~p~ll~~asqlK-aGkGltIv~s~l~G~~~e~~~~a~ 735 (1075)
T KOG2082|consen 660 LSLSAARYSLLRLEEGPPHPKNWRPQLLVLLRL---DEDIDVKHPRLLNFASQLK-AGKGLTIVGSVLQGTFLEDKGEAQ 735 (1075)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCceeeeeecc---cchhchhhhhHhhHHHHhh-cCCCeEEEEEeecCCchhhhHHHH
Confidence 999999999999999999999999999999863 2445678999999999998 789999999999999988888888
Q ss_pred HHHHHHHHHhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHHhccc
Q 005728 384 TACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANK 463 (680)
Q Consensus 384 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~ 463 (680)
+++++++..++.+|+++|+++++++++++|+++++|+.|||+|||||++||||..||+++..+.+..|+++++++...++
T Consensus 736 ~a~~t~~~~m~~~r~~Gf~q~vv~~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~v~~~~a~~~ 815 (1075)
T KOG2082|consen 736 RAEETIRTLMEAERVKGFAQTVVASNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIETVRDTTAAHL 815 (1075)
T ss_pred HHHHHHHHHHhHHHhhhhhhhhcccchhhhhhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHHHHHhhccce
Confidence 88899999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred eEEEEcCCCCCCcccccCCCcceeEEEecCChHHHHHHHHhccCCCcCCCeeEEEEeecCcchHHHHHHHHHHHHHhccc
Q 005728 464 AVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRM 543 (680)
Q Consensus 464 ~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~Lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI 543 (680)
++++.||++.||.+.++..|+|||||++||||++||+||+|++|++||+||+|+|++++.+++.++||++++++++++||
T Consensus 816 al~v~K~i~~fP~~~er~~G~IDvwWIVhDGG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl~~flY~LRi 895 (1075)
T KOG2082|consen 816 ALLVAKGIDDFPSNVERFSGHIDVWWIVHDGGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDLQKFLYHLRI 895 (1075)
T ss_pred eEEEecCcccCchhhhhhcCceeEEEEEecCchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHHHHHHHhhcc
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCcccccc---------CCCCChhhHHHHHHHHHhH---hh---------------------------hHH
Q 005728 544 QAEVIVISMKSWDEQTE---------NGPQQDESLDAFIAAQHRI---KN---------------------------YLA 584 (680)
Q Consensus 544 ~aev~vi~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~---------------------------~~~ 584 (680)
+|||.|+++.++|++.+ ++++..+.++.+.+.+++. .+ .|.
T Consensus 896 ~Aev~vVem~~~dis~~~~ertl~mE~rsq~~~~m~~~k~~~~r~~l~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t 975 (1075)
T KOG2082|consen 896 DAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRQMRLSKNERERAQLIHDRNAPRRPSSLHSDEARPFETAPTKVQMTWT 975 (1075)
T ss_pred cceEEEEEecchhhhHHHHHHHHHHHhhHHHHHHHHhhhhhhhccccchhcCCccccccccccccccCCCCCcceechhh
Confidence 99999999999988753 1111112222222211110 00 000
Q ss_pred HhhHhhhhcCCC--CCCCCCC---cccChHHHHHHHHHhHHHHHHHHhcCCCccEEEEeCCCCCCCC-CchhhHhHHHHH
Q 005728 585 EMKAEAQKSGTP--LMADGKP---VVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINH-PAYCYMEYMDLL 658 (680)
Q Consensus 585 ~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~lneli~~~S~~a~Lv~~~LP~p~~~~-~~~~Ym~~le~l 658 (680)
..+..+ ...++ .....++ .+. ++...++||+++||||+|++||+||+||++|||.||++. .+..||+|||+|
T Consensus 976 ~~k~~~-~~~~~~~~~~~~k~~~~~~~-~~snv~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~Ymeylevl 1053 (1075)
T KOG2082|consen 976 RDKYMA-STSNPAFSLSGFKDLFSMKP-DQSNVRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDENYMEYLEVL 1053 (1075)
T ss_pred hhhHHH-hccCCcchhccCCcccccCh-hhHHHHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhhHHHHHHHH
Confidence 000000 00011 1111111 112 234446699999999999999999999999999999996 468999999999
Q ss_pred hcCCCceEEEccCCceeeeecC
Q 005728 659 VENVPRLLIVRGYRRDVVTLFT 680 (680)
Q Consensus 659 t~~lpp~llVrG~~~~VlT~ys 680 (680)
|++|||||||||.|+||||+||
T Consensus 1054 te~l~Rvl~VrG~greViTi~s 1075 (1075)
T KOG2082|consen 1054 TEGLPRVLLVRGGGREVITIYS 1075 (1075)
T ss_pred HcCCCeEEEEccCCceEEEecC
Confidence 9999999999999999999998
No 2
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=5.3e-127 Score=1127.90 Aligned_cols=624 Identities=40% Similarity=0.689 Sum_probs=547.5
Q ss_pred cccccccccccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHH
Q 005728 27 AGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTT 106 (680)
Q Consensus 27 ~g~~g~~~~~~~~N~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~ 106 (680)
.|++|++..+|.+|+.|++..+. .+|+++++++||||+|||+++++|||+|||+|+||||++++++++
T Consensus 257 ~g~~~~~~~~f~~n~~p~~~~~~------------~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~ 324 (953)
T TIGR00930 257 KGFFGLGNEIFSENFIPGIPGPE------------GGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTT 324 (953)
T ss_pred cceeeccchhhhhccCCCCCCcc------------cHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHH
Confidence 45677788888889888765321 148999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhhH-------hH---------------------hHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 005728 107 TALYVISVLLFGAAATREEL-------LT---------------------DRLLTATIAWPFPAVIHIGIILSTLGAALQ 158 (680)
Q Consensus 107 ~v~Yil~~~~~g~~~~~~~~-------~~---------------------~~~~~~~~~~~~~~ii~ig~~~s~lss~~~ 158 (680)
+++|++..++++.+.+++.. .. +.+......+++++++.+++++++++++++
T Consensus 325 ~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la 404 (953)
T TIGR00930 325 TVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALA 404 (953)
T ss_pred HHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999777777777654431 11 111111122334689999999999999999
Q ss_pred HHhhHHHHHHHHHhCCCCC--ccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhHHHHHHHHh
Q 005728 159 SLTGAPRLLAAIANDDILP--VLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLD 236 (680)
Q Consensus 159 ~l~~~sR~l~amArDg~lP--~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~~l~~y~li~~a~~~lr 236 (680)
+++++||++|+|||||++| +++...++|+++|++|++++++++++++++++++.++++++++++++|+++|+++++++
T Consensus 405 ~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~ 484 (953)
T TIGR00930 405 SLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHAS 484 (953)
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 44444456789999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHhc
Q 005728 237 LLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSL 316 (680)
Q Consensus 237 ~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~~iy~~~~~~~~~~~wg~~~~~~~~~~~~~~l~~l 316 (680)
..+.|+|||.||+++|+++++|+++|+++|+.++|.++++++++++++|+|+.+++++++|||+.|++.|++||+++++|
T Consensus 485 ~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i~w~~ali~~~i~~~ly~~~~~~~~~~~wg~~~~~~~~~~a~~~ll~l 564 (953)
T TIGR00930 485 LLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLISWWAALVAMVIALFLYKYVTYKKPDVNWGSSTQALSYSLALYSLLRL 564 (953)
T ss_pred hccCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHHHhhhc
Q 005728 317 GANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYK 396 (680)
Q Consensus 317 ~~~~~~~k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (680)
+++++|+||||||+||++++| +++++|++||++++ +|+|+++++||++|++++..++.++.++++++|++++
T Consensus 565 ~~~~~h~knwrPqiLvl~~~p-------~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (953)
T TIGR00930 565 EEVEDHVKNWRPQCLVLTGPP-------VCRPALLDFASQFT-KGKGLMICGSVIQGPRLECVKEAQAAEAKIQTWLEKN 636 (953)
T ss_pred cCCCCCccccCCeEEEEeCCC-------cCcHHHHHHHHHhc-cCCcEEEEEEEecCchhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999743 46889999999998 5689999999999998777777777788999999999
Q ss_pred cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHHhccceEEEEcCCCCCCc
Q 005728 397 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPN 476 (680)
Q Consensus 397 ~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~ 476 (680)
|+|||+++++++|+++|+++++|++|||+||||||+||||++|++++. +.+++|+++++||+++++||+|+|+.+.+|.
T Consensus 637 ~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~-~~~~~y~~~i~~a~~~~~~v~i~r~~~~~~~ 715 (953)
T TIGR00930 637 KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEP-RAWETYIGIIHDAFDAHLAVVVVRNSEGLPI 715 (953)
T ss_pred CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccc-hhHHHHHHHHHHHHHcCCcEEEEcccccCCc
Confidence 999999999999999999999999999999999999999999998764 4468999999999999999999999887774
Q ss_pred c-------------------------------------c-ccC-CCcceeEEEecCChHHHHHHHHhccCCCcCCCeeEE
Q 005728 477 E-------------------------------------Y-QRQ-YGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQV 517 (680)
Q Consensus 477 ~-------------------------------------~-~~~-~g~IDvwW~~~dGgL~Lll~~lL~~~~~W~~~klRv 517 (680)
+ + +++ +|||||||++|||||||||||||++|+.||+|||||
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDvwW~~~dggL~lll~~ll~~~~~W~~~kiRv 795 (953)
T TIGR00930 716 SVLQVQEELENDCSEDSIELNDGKISTQPDMHLEASTQFQKKQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRI 795 (953)
T ss_pred hhhccccccccccccccccccccccccccccchhhhhhhhccCCCceEEEEEecCCCcHHHHHHHHHhcCccccCceEEE
Confidence 4 2 223 589999999999999999999999999999999999
Q ss_pred EEeecCcchHHHHHHHHHHHHHhcccccEEEEEecCCccccccCCCCChhhHHHHHHHHHhHhhhHHHhhHhhhhcCCCC
Q 005728 518 FCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPL 597 (680)
Q Consensus 518 f~~~~~~~~~~~~~~~l~~ll~~~RI~aev~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (680)
|++++++++.+++|++|+++|++|||+||+++|++ |+ +.+|++++++.|+++.++++....+.+.. ..++.
T Consensus 796 f~~~~~~~~~~~~~~~~~~lL~~~RI~a~~~~v~~---di---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 866 (953)
T TIGR00930 796 FVGAQKDDRSEQEKKDMATLLYKFRIDAEVIVVLM---DI---NAKPQTESMEAFEEMIRPFRLHKTEKDRE---AKDPK 866 (953)
T ss_pred EEEecCCchHHHHHHHHHHHHHHhCCCCEEEEEec---cC---CCCcchhHHHHHHHHHhhhhhcccccccc---ccccc
Confidence 99999999999999999999999999999999986 33 34588899999988766554433221111 12234
Q ss_pred CCCCCCcccChHH---HHHHHHHhHHHHHHHHhcCCCccEEEEeCCCCCCC-CCchhhHhHHHHHhcCCCceEEEccCCc
Q 005728 598 MADGKPVVVNEQQ---VEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPIN-HPAYCYMEYMDLLVENVPRLLIVRGYRR 673 (680)
Q Consensus 598 ~~~~~~~~~~~~~---~~~~~~~~~~lneli~~~S~~a~Lv~~~LP~p~~~-~~~~~Ym~~le~lt~~lpp~llVrG~~~ 673 (680)
+..++|+.++|++ .++.++|++||||+|+|||+||+||++|||+||++ +++.+||+|||+||+||||+|||||||+
T Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~rlneli~~~S~~a~lv~~~lp~p~~~~~~~~~Ym~~l~~lt~~l~p~llvrGn~~ 946 (953)
T TIGR00930 867 MTWTKPWKITDAELQSNVRKSYRQVRLNELLLEYSRDAALVVLSLPVPRKGSISDELYMAWLEVLSEDLPPVLLVRGNHR 946 (953)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEecCCc
Confidence 4556677777654 44557999999999999999999999999999998 7889999999999999999999999999
Q ss_pred eeeeecC
Q 005728 674 DVVTLFT 680 (680)
Q Consensus 674 ~VlT~ys 680 (680)
|||||||
T Consensus 947 ~vlt~~s 953 (953)
T TIGR00930 947 NVLTFYS 953 (953)
T ss_pred eeeeecC
Confidence 9999998
No 3
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-100 Score=814.61 Aligned_cols=624 Identities=28% Similarity=0.443 Sum_probs=514.3
Q ss_pred chhhhHhhhhhhhhh--------------------hcccccccccccccccCCCcccCCCCCCCCCCCcchhHHHHHHHH
Q 005728 11 CCMEYDSLFLSFYFY--------------------TAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGL 70 (680)
Q Consensus 11 ~~~~~~~~~~~~~~~--------------------~~g~~g~~~~~~~~N~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i 70 (680)
...+++|+.+|+++. ...|||++++|+.+|+.|+|+.++..+ ...+|...|++
T Consensus 230 is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~-------~~~~F~~~FgV 302 (945)
T KOG1288|consen 230 ISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGG-------GYEDFASTFGV 302 (945)
T ss_pred HHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCC-------Cceehhhhhee
Confidence 345677777776652 357999999999999999999987533 34589999999
Q ss_pred HHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHhHHHH-hhccchhHHHHHHHHH
Q 005728 71 FFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLT-ATIAWPFPAVIHIGII 149 (680)
Q Consensus 71 ~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ii~ig~~ 149 (680)
+|++.+|++++++||||+|+|+|+||||++.++..++++|++.+++++++.++..+.+|..+. ....| ++++.+|++
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~isl~--p~fi~iGi~ 380 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHISLH--PPFILIGIL 380 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeecccc--chHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888875444 44444 489999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCCCcccccccc--CCCCchHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 005728 150 LSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA--EGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSG 227 (680)
Q Consensus 150 ~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~--k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~~l~~y~l 227 (680)
.+++++.++.+++++|+|.|+|||+++|..+.+.|. ..+.|+.|+++++++..++.+.|++|.|+.+++++|+++|+.
T Consensus 381 sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~ 460 (945)
T KOG1288|consen 381 STTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGA 460 (945)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776553 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHH
Q 005728 228 VNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQ 307 (680)
Q Consensus 228 i~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~~iy~~~~~~~~~~~wg~~~~~~~~~ 307 (680)
+|++|+.++....|++||.|||++|.++++|++.|+.+|++++...+.+.+++..++...++++.|.++|||+.|+++||
T Consensus 461 vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvVd~~~A~~~~l~~~iLv~~lh~~~pp~swG~VSQaLiyH 540 (945)
T KOG1288|consen 461 VNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVVDRINASISFLLMGILVVVLHYFSPPKSWGDVSQALIYH 540 (945)
T ss_pred HHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhheecchhhhHHHHHHHHHHHHHhhcCCccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCcc-chHHHHHHH
Q 005728 308 LALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE-CAEDAKTAC 386 (680)
Q Consensus 308 ~~~~~l~~l~~~~~~~k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~-~~~~~~~~~ 386 (680)
|+||||++|+.++||+|+||||||++++. |++...|++|||+|||+| +-+++||..||... ..++.++.+
T Consensus 541 QVRKYLL~ld~rkdhVKfWRPQILLlV~n-------Prss~~Lirf~N~LKKgg--LYilGHV~~gd~~~~~~d~l~~q~ 611 (945)
T KOG1288|consen 541 QVRKYLLRLDVRKDHVKFWRPQILLLVSN-------PRSSCNLIRFCNDLKKGG--LYILGHVIVGDDFSASMDELQQQQ 611 (945)
T ss_pred HHHHHHHhcchhhhhcccccceEEEEecC-------CcccchHHHHHHhhcccc--eEEEEEEEeccccccccchhhHHH
Confidence 99999999999999999999999999963 335568999999999875 55779999887543 345566677
Q ss_pred HHHHHHhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhc-----ccc------------------
Q 005728 387 KQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWR-----REN------------------ 443 (680)
Q Consensus 387 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~-----~~~------------------ 443 (680)
+.|.+++++.++|||++++.++|+++|++|++..+|||+|||||+++||.+... +++
T Consensus 612 ~~W~s~vd~~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~~~pq~~~q~~~~~s~~s~~~r~~~se~~ 691 (945)
T KOG1288|consen 612 RAWLSFVDDAGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDLEPPQDRFQNGLQKSSFSKEDRSEESESD 691 (945)
T ss_pred HHHHHHHHHhhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecCCCchhhhhcCccccccccCCcccccccc
Confidence 789999999999999999999999999999999999999999999999954210 000
Q ss_pred ------------cCCCchhHHHHHHHHHhccceEEEEcCCCCCCcccc----cCCCcceeEEEec------CC-------
Q 005728 444 ------------LTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQ----RQYGTIDLYWIVR------DG------- 494 (680)
Q Consensus 444 ------------~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~~~----~~~g~IDvwW~~~------dG------- 494 (680)
.+-.+.+||++++|++.|+||||++||++..+.+.. .++++||||.+.. ++
T Consensus 692 s~~~P~~~~g~~~~~~pq~yVqil~D~l~m~kNv~var~f~~L~~~~~~r~~~~kkyIDvwPi~l~~p~~~~~~~~d~t~ 771 (945)
T KOG1288|consen 692 SNPFPTRKDGNEHDLNPQDYVQILEDMLVMSKNVCVARGFDRLDKPKLSRSCGQKKYIDVWPINLISPVGGEPGENDETY 771 (945)
T ss_pred ccCCCcccCCChhhCCHHHHHHHHHHHHhcccceeeecccccCChhhhhcccCCceeEEeeeeeccccCCCCCCcchhHH
Confidence 011357899999999999999999999998765443 2468999999841 12
Q ss_pred hHHHHHHHHhccCCCcCC-CeeEEEEeecCcc-hHHHHHHHHHHHHHhcccccEEEEEecCCccccccCCCCChhhHHHH
Q 005728 495 GLMLLLSQLLLTKESFES-CKIQVFCIAEEDS-DAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAF 572 (680)
Q Consensus 495 gL~Lll~~lL~~~~~W~~-~klRvf~~~~~~~-~~~~~~~~l~~ll~~~RI~aev~vi~~~~~~~~~~~~~~~~~~~~~~ 572 (680)
-++|||++||.+.+.||. ||||||.+++.++ ..+.+++.|+++|+++||+|||.|++....... .++..++ ..|
T Consensus 772 lfllQLa~IL~m~~~Wk~~~~LRvflcv~~~~~~~~~E~q~m~~mlq~lRI~aev~vv~~~~~~~~--~~e~~~~--~df 847 (945)
T KOG1288|consen 772 LFLLQLAWILHMVSDWKSGRRLRVFLCVEFEEREGTAERQSMKQMLQTLRIEAEVVVVCLDAMNVD--AQEKGDP--IDF 847 (945)
T ss_pred HHHHHHHHHHHhhHHhhccceEEEEEEecchhhhhhhhHHHHHHHHHHheecceEEEEEeeceeee--eeeccCC--ccc
Confidence 369999999999999986 6799999998876 444555669999999999999999975432221 1111111 122
Q ss_pred HHHHHhHhhhHHHhhHhhhhcCCCCCCCCCCcccChHHHHHH----HHHhHHHHHHHHhcCCCccEEEEeCCCCCCC--C
Q 005728 573 IAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKF----LYTTLKLNSTILRHSRMAAVVLVSLPPPPIN--H 646 (680)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lneli~~~S~~a~Lv~~~LP~p~~~--~ 646 (680)
... ++ .+.. +++.. .. ..+.+++.. +....+.||..+++|.++++-+++||.||+. .
T Consensus 848 ~~~-~r--~~~~----~a~~~-----~~-----s~~~~v~~~~~rs~~y~s~~~e~~~~~~~~Tals~~~l~~Pp~~sd~ 910 (945)
T KOG1288|consen 848 DYV-DR--RYTA----KAEAV-----AP-----SASPEVEALFTRSLKYDSGWQEEGKRRGMNTALSLLYLPFPPRMSDP 910 (945)
T ss_pred ccc-cc--ccCc----ccccc-----cC-----CCChhhhccccccccccccchhhhhhcCccccccccccCCCccccCc
Confidence 210 00 0100 00000 00 011122211 2234688999999999999999999999974 2
Q ss_pred C--chhhHhHHHHHhcCCCceEEEccCCc
Q 005728 647 P--AYCYMEYMDLLVENVPRLLIVRGYRR 673 (680)
Q Consensus 647 ~--~~~Ym~~le~lt~~lpp~llVrG~~~ 673 (680)
. ...||+-++.||.+|||+|+|||.+.
T Consensus 911 d~r~~sy~~~~~~lT~~L~ptLlvhgvt~ 939 (945)
T KOG1288|consen 911 DFRSASYLELLPPLTVDLGPTLLVHGVTS 939 (945)
T ss_pred ccccHHHHHhhhhhcccCCCceeeccccc
Confidence 2 46899999999999999999999853
No 4
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-58 Score=495.08 Aligned_cols=419 Identities=30% Similarity=0.550 Sum_probs=379.7
Q ss_pred hcccccccccccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHH
Q 005728 26 TAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLT 105 (680)
Q Consensus 26 ~~g~~g~~~~~~~~N~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i 105 (680)
.+|+.|++.+.|.+|++|+|++++ +|+++|+++|++++|+.+++|++|++|+|+++||+|++.++.+
T Consensus 200 ~~g~~~~~a~~~~~n~~~~~~~~~-------------tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~v 266 (643)
T KOG2083|consen 200 SSGFFGYRADIFVENLNPDIDPGY-------------TFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGV 266 (643)
T ss_pred cccccccchhhcccCCCCCcCCCC-------------ceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhh
Confidence 459999999999999999998643 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhhHhH--------------hHHHHhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005728 106 TTALYVISVLLFGAAATREELLT--------------DRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIA 171 (680)
Q Consensus 106 ~~v~Yil~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amA 171 (680)
++.+|+..+...|.++.++.+.. +.+.....-..+.+.+..|++.+.++++.+++.++++++|+++
T Consensus 267 st~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~ 346 (643)
T KOG2083|consen 267 STLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALC 346 (643)
T ss_pred hhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999988888888887766311 1111111111224688999999999999999999999999999
Q ss_pred hCCCCCcccccc--ccCCCCchHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCccc
Q 005728 172 NDDILPVLNYFK--VAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKF 249 (680)
Q Consensus 172 rDg~lP~~~~~~--~~k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~ 249 (680)
+|+..|.+.++. .+++..|.++.+++..++..++.++++|.++++.+.+++.+|+++|++|+..+....+.|||+|++
T Consensus 347 kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp~f~~ 426 (643)
T KOG2083|consen 347 KDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEGWRPSFKF 426 (643)
T ss_pred hcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhccccccCchhhh
Confidence 999999865554 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCcCCc
Q 005728 250 HHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPI 329 (680)
Q Consensus 250 ~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~~iy~~~~~~~~~~~wg~~~~~~~~~~~~~~l~~l~~~~~~~k~~RPq 329 (680)
+.+|++++|++.|+.+||.+.|+++++.+.....+|+|..+++++.+||+++|+..|..++.++.++++.++|+|++|||
T Consensus 427 yn~wVSllGalKOG~ImFli~w~aaLi~~~~~~~Ly~yv~~~~pdvnwGsStqa~sy~~al~~~~~l~sles~v~~~~pq 506 (643)
T KOG2083|consen 427 YNAWVSLLGALLCLAIMFLISWWAALITFSVLSALYLYVGRRKPDVNWGSSTQASSYLNALSHSLQLNSLESHVKNIRPQ 506 (643)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcCchHHHHHHHHHHHhhccccchhhhhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHHHhhhccccceEEEEecCC
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPN 409 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 409 (680)
+++++++++ .++.+++++++++| +.++.+|+|+..++++....+..+..++..+|++++++|+||..+.+++
T Consensus 507 ~l~lsG~p~-------~r~~l~d~~~~~tr-~~~l~icg~v~~~p~~~~~~~~~~~~~~~~~wl~~~~v~aFy~~v~~~~ 578 (643)
T KOG2083|consen 507 VLLLSGDPA-------SRPALVDPDHSITR-NYSLSICGHVEPLPYSRSYKELLKIDKQINDWLRKRKVKAFYAAVANTD 578 (643)
T ss_pred eeeecCChh-------hcccccCcchhhhh-ccceeeecceeccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Confidence 999998642 47889999999996 5789999999999877666666777788999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHHhccceEEEEc
Q 005728 410 MSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVK 469 (680)
Q Consensus 410 ~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r 469 (680)
+++|++.++|.. +||||++++||+++|++.++++. ++|.+++||++|.+.+|++.|
T Consensus 579 ~~~G~~~l~q~~---r~kpn~~~~g~k~~w~~~~~~~~-~~y~~~~~~afd~~~~v~i~r 634 (643)
T KOG2083|consen 579 FREGAQILLQAG---RMKPNILVLGYKTNWEKASPEEI-SEYYGLLHDAFDFQVGVIIFR 634 (643)
T ss_pred hhhHHHHHHHHh---cCCCcEEEEeeccchhhCChhhH-hHHHhhhhhhhccccceEEEE
Confidence 999999999986 99999999999999999877655 789999999999999999999
No 5
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.95 E-value=3.7e-27 Score=268.30 Aligned_cols=234 Identities=20% Similarity=0.230 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHH-HHHHhcccchhhHhHhHHHH--hhcc
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVIS-VLLFGAAATREELLTDRLLT--ATIA 137 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~-~~~~g~~~~~~~~~~~~~~~--~~~~ 137 (680)
+.+++.+++..+|+|.|+|++++++||+|||+|++|||++.++++++++|++. .++.+.+++.+...++++.. ...+
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g 309 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG 309 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999999999954 45555555433222223221 1222
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhHHhH
Q 005728 138 W-PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPT 216 (680)
Q Consensus 138 ~-~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l 216 (680)
+ ....++.++++++.+++.++.+++.+|++++|||||.+|+++.+.++|+++|++|++++++++.++.++.+++.+.++
T Consensus 310 ~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l 389 (557)
T TIGR00906 310 WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDL 389 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 2 235678889999999999999999999999999999999987766778999999999999999888888889999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcC---------------------------------------------------------
Q 005728 217 ITMFFLLCYSGVNLSCFLLDLLD--------------------------------------------------------- 239 (680)
Q Consensus 217 ~s~~~l~~y~li~~a~~~lr~~~--------------------------------------------------------- 239 (680)
.+++.+++|++++++++.+|++.
T Consensus 390 ~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (557)
T TIGR00906 390 LSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAI 469 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999998532
Q ss_pred --------------------------CCCC--CCCcccc-hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005728 240 --------------------------APSW--RPRWKFH-HWSLSLLGSVFCIVIMFLI---SWSFTVVSLALASLIYYY 287 (680)
Q Consensus 240 --------------------------~p~~--rp~fk~~-~~~~~llg~v~~~~~~~~i---~~~~~~i~~~i~~~iy~~ 287 (680)
.|+. +++||.| .|+++.+++++|+++|..+ +|..+.+|+++|+++|+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~ 549 (557)
T TIGR00906 470 AEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFL 549 (557)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 2332 4559998 7899999999999999886 689999999999999999
Q ss_pred HhhcCCC
Q 005728 288 VCLKGKA 294 (680)
Q Consensus 288 ~~~~~~~ 294 (680)
|.+|+.+
T Consensus 550 yg~~~s~ 556 (557)
T TIGR00906 550 YGIRHSL 556 (557)
T ss_pred hhhhccC
Confidence 9888653
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.93 E-value=3.2e-25 Score=247.27 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHhH--hHHH---Hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELLT--DRLL---TA 134 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~~--~~~~---~~ 134 (680)
..++..++...+|+|.|||.+++++||+|||+|++|||++.++++++++|++..+ ..+..+ .+.+.. .++. ..
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~-~~~l~~~~~p~~~~~~~ 272 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMP-FDKLANSETPISDALTW 272 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHhcCCchHHHHHHH
Confidence 4578888999999999999999999999999999999999999999999996444 444444 343321 2221 11
Q ss_pred --hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhh
Q 005728 135 --TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDL 212 (680)
Q Consensus 135 --~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~ 212 (680)
..+.....++.++++++++++.++.+.+++|++++|||||.+|+.+.+.|+|+++|++|+++++++++++.+.++++.
T Consensus 273 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~ 352 (445)
T PRK11357 273 IPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTS 352 (445)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 133333566777888899999999999999999999999999998776677899999999999999988888888999
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 005728 213 ITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-HWSLSLLGSVFCIVIMFLI-------SWSFTVVSLALASLI 284 (680)
Q Consensus 213 i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~-~~~~~llg~v~~~~~~~~i-------~~~~~~i~~~i~~~i 284 (680)
+..+.+..+++.|.+...+++++|++ ++++++||.| .+.+++++++.++++++.. ++...++++++++.+
T Consensus 353 l~~~~~~~~~~~~~~~~~a~i~lr~~--~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 430 (445)
T PRK11357 353 LLGYFTLVMCFKNTLTFGSIIWCRKR--DDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPA 430 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeecC--CCCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhH
Confidence 99999999999999998888887754 3455669988 6778888888887665432 234556777788888
Q ss_pred HHHHhhcC
Q 005728 285 YYYVCLKG 292 (680)
Q Consensus 285 y~~~~~~~ 292 (680)
|+++++|+
T Consensus 431 y~~~~~~~ 438 (445)
T PRK11357 431 YAFWAKRS 438 (445)
T ss_pred Hhheechh
Confidence 88765553
No 7
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.93 E-value=1e-24 Score=242.97 Aligned_cols=229 Identities=16% Similarity=0.131 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHh--HhHHH---Hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELL--TDRLL---TA 134 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~--~~~~~---~~ 134 (680)
..+++.++...+|+|.|+|.+++++||+|||+|++|||++.++.++.++|++..+ ..+..+ .+.+. ++++. ..
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~-~~~l~~~~~p~~~~~~~ 268 (442)
T TIGR00908 190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAAD-AKELMGSNNPLPEALES 268 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHhCCCcchHHHHHHH
Confidence 4578888889999999999999999999999999999999999999999985443 334444 33331 22322 22
Q ss_pred hccc--hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhh
Q 005728 135 TIAW--PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDL 212 (680)
Q Consensus 135 ~~~~--~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~ 212 (680)
..+. ....++.+..+++.+++.++.+++++|++++|||||.+|+++.+.+ |+++|++|+++++++++++.+.++.+.
T Consensus 269 ~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~ 347 (442)
T TIGR00908 269 IYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTAL 347 (442)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHH
Confidence 2221 1245666777888899999999999999999999999999866444 999999999999999888887777788
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc-hhhHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHH
Q 005728 213 ITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-HWSLSLLGSVFCIVIMFL---ISW---SFTVVSLALASLIY 285 (680)
Q Consensus 213 i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~-~~~~~llg~v~~~~~~~~---i~~---~~~~i~~~i~~~iy 285 (680)
+..+.++..++.|++++++++++|++ .|+.+++||.| .++.++++++.|+++++. .++ ....++++++.+.|
T Consensus 348 l~~~~~~~~~~~y~~~~~a~i~lr~~-~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (442)
T TIGR00908 348 IILVSVFGAIISYVLSMAAHFTLRIR-RPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYY 426 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999876 57777779987 566777777766654433 333 22344455555556
Q ss_pred HHHhhcC
Q 005728 286 YYVCLKG 292 (680)
Q Consensus 286 ~~~~~~~ 292 (680)
+.+.|++
T Consensus 427 ~l~~~~~ 433 (442)
T TIGR00908 427 FLYSRHH 433 (442)
T ss_pred Hhhhhch
Confidence 5554443
No 8
>PRK10655 potE putrescine transporter; Provisional
Probab=99.93 E-value=1.7e-24 Score=241.02 Aligned_cols=232 Identities=12% Similarity=0.182 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHH-HHHHhcccchhhHhH--hHHH---Hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVIS-VLLFGAAATREELLT--DRLL---TA 134 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~-~~~~g~~~~~~~~~~--~~~~---~~ 134 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++. ....+..++.+ +.. +++. ..
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~-l~~~~~p~~~~~~~ 266 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNME-LANSTAPFGLAFAQ 266 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HhhccchHHHHHHH
Confidence 35788889999999999999999999999999999999999999999999964 44445544433 322 2322 22
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh-------
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------- 207 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------- 207 (680)
..+.....++.++++++.+++.++++.+++|+++++||||.+|+++. +.+|+++|++|++++++++.++.++
T Consensus 267 ~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~-~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~ 345 (438)
T PRK10655 267 MFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFS-RVTKVDAPVQGMLIIVVIQSLLSLMTISPSLN 345 (438)
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH-hhCcCCCCHHHHHHHHHHHHHHHHHHhCccHH
Confidence 33433456778888899999999999999999999999999999765 4457899999999999887655442
Q ss_pred hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 005728 208 GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW---SFTVVSLALASLI 284 (680)
Q Consensus 208 ~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~---~~~~i~~~i~~~i 284 (680)
..++.+.++.++..++.|++++++.+++|+++ |+.+++||.+ ..+++++.+.|++.++...+ ....+++++++++
T Consensus 346 ~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 423 (438)
T PRK10655 346 SQFNVLVNLAVVTNIIPYILSMAALVIIQKVA-NVPPSKAKVA-NFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTL 423 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcchhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999998875 4333346643 36778888888766555433 3356677788888
Q ss_pred HHHHhhcCCCCC
Q 005728 285 YYYVCLKGKAGD 296 (680)
Q Consensus 285 y~~~~~~~~~~~ 296 (680)
|.+..+|...+|
T Consensus 424 y~~~~~~~~~~~ 435 (438)
T PRK10655 424 YGLISPRFELKN 435 (438)
T ss_pred HHHHHHhhhhcc
Confidence 877666654443
No 9
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.93 E-value=3.5e-24 Score=238.86 Aligned_cols=231 Identities=15% Similarity=0.179 Sum_probs=177.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHH-HHHhcccchhhHhH-hHHH---Hhh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISV-LLFGAAATREELLT-DRLL---TAT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~-~~~g~~~~~~~~~~-~~~~---~~~ 135 (680)
+.++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++.. ...+..++.+...+ .++. ...
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~ 269 (445)
T PRK10644 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMA 269 (445)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHH
Confidence 446778888999999999999999999999999999999999999999999654 44455544332211 2332 222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh-------h
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-------G 208 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~-------~ 208 (680)
.+.....++.++++++++++.++.+.+++|++++|||||.+|+++. +.+|+++|++|++++++++.++.+. .
T Consensus 270 ~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~-~v~~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~ 348 (445)
T PRK10644 270 LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA-RVNKAGTPVAGLLIVGVLMTIFQLSSISPNASK 348 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH-hhCcCCCCHHHHHHHHHHHHHHHHHHHccchHH
Confidence 3333356777788899999999999999999999999999998765 4457899999999999988766543 2
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW---SFTVVSLALASLIY 285 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~---~~~~i~~~i~~~iy 285 (680)
.++.+.++.++..+++|++++++++++|+++ +++++++ ++++++++++.|+++++..++ .+..++++++.++|
T Consensus 349 ~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~-~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 424 (445)
T PRK10644 349 EFGLVSSVSVIFTLVPYLYTCAALLLLGHGH-FGKARPA---YLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFY 424 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccccc---hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999998764 3332222 467899999999988876553 44555667777777
Q ss_pred HHHhhcCCCCC
Q 005728 286 YYVCLKGKAGD 296 (680)
Q Consensus 286 ~~~~~~~~~~~ 296 (680)
++.++||.+..
T Consensus 425 ~~~~~~~~~~~ 435 (445)
T PRK10644 425 ALNYNRLHKNP 435 (445)
T ss_pred HHHHHhhcCCC
Confidence 76655544443
No 10
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.93 E-value=1.6e-24 Score=245.10 Aligned_cols=223 Identities=15% Similarity=0.151 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHhH-h----HHHHh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELLT-D----RLLTA 134 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~~-~----~~~~~ 134 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+ ..+..+ .+...+ + .+...
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 312 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLS-PEELLASLAVAVDFGER 312 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHhcChHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999996544 344444 333322 1 12222
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhHH
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLIT 214 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~i~ 214 (680)
..++ ...++.+.+.++++++.++.+.+++|++++|||||.+|+.+.+.++|+++|++|+++++++++++.+.+++..+.
T Consensus 313 ~~g~-~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~ 391 (501)
T TIGR00911 313 LLGV-MSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLI 391 (501)
T ss_pred Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3342 356778888899999999999999999999999999999876566688999999999998888777777777788
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHH
Q 005728 215 PTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLI---S---WSFTVVSLALASLIYYY 287 (680)
Q Consensus 215 ~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i---~---~~~~~i~~~i~~~iy~~ 287 (680)
.+.+..+++.|++++++++++|++ +|+.+++||.|. +.+.++++.|+++++.. + .....+++++++++|++
T Consensus 392 ~~~~~~~~i~y~l~~~a~i~lR~~-~p~~~rp~r~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 468 (501)
T TIGR00911 392 NLISFANWLFNALAVAGLLWLRYK-RPEMNRPIKVPL-FFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFF 468 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHheecc-CCCCCCCccCch-HHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHH
Confidence 888889999999999999999886 466666788875 35666666666555332 1 23344556677777764
No 11
>TIGR00909 2A0306 amino acid transporter.
Probab=99.93 E-value=2.9e-24 Score=238.50 Aligned_cols=225 Identities=20% Similarity=0.263 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhH--hHH---HHhhc
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRL---LTATI 136 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~--~~~---~~~~~ 136 (680)
.++..++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+......+.+...+ +++ .....
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (429)
T TIGR00909 195 GGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG 274 (429)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC
Confidence 4788899999999999999999999999999999999999999999999965444333333343321 122 12223
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhHHhH
Q 005728 137 AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPT 216 (680)
Q Consensus 137 ~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l 216 (680)
+.....++.++++++++++.++++.+.||+++++||||.+|+.+.+.|+|+++|++|+++++++++++.+.+.++.+.++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~ 354 (429)
T TIGR00909 275 QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAEL 354 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 33346788999999999999999999999999999999999987656668999999999999998888777888999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 005728 217 ITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-HWSLSLLGSVFCIVIMFLIS---WSFTVVSLALASLIYYY 287 (680)
Q Consensus 217 ~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~-~~~~~llg~v~~~~~~~~i~---~~~~~i~~~i~~~iy~~ 287 (680)
.++..++.|++++++++++|++ +|+.+++||.+ .+..+.+..+.|++++...+ +...++++++|.++|.+
T Consensus 355 ~~~~~~~~y~~~~~a~~~lr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 355 TSIGTLIAFAAVNVAVIILRRR-RPDIQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999876 46666778877 56666666666766555443 45667888888888764
No 12
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.93 E-value=9.8e-27 Score=261.76 Aligned_cols=260 Identities=21% Similarity=0.230 Sum_probs=195.6
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhH--hH-----hHHH
Q 005728 60 VDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL--LT-----DRLL 132 (680)
Q Consensus 60 ~~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~--~~-----~~~~ 132 (680)
.+.+++.++...+++|+|+|+++.++||+|||+|+||||+..++++++++|++.........+.+.. .. +++.
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 277 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFV 277 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchh
Confidence 4678999999999999999999999999999999999999999999999999766655554444332 11 1222
Q ss_pred H---hhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhh
Q 005728 133 T---ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGN 209 (680)
Q Consensus 133 ~---~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~ 209 (680)
. ...+.....++.++++.++++++++.++++||++++|||||.+|+.+..+++|+|+|++|++++++++.+..+...
T Consensus 278 ~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~ 357 (478)
T PF00324_consen 278 IAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGS 357 (478)
T ss_pred hhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeecc
Confidence 1 1222233678899999999999999999999999999999999955566889999999999999998877665433
Q ss_pred ------hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCC----CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005728 210 ------LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRP----RWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLA 279 (680)
Q Consensus 210 ------~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp----~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~ 279 (680)
++.+..+.++..++.|.+++++.+++|++.+...++ +|+.+ . ..+....+......+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~i~ 425 (478)
T PF00324_consen 358 FSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSP--F----------GPMFAILGIAALIIIL 425 (478)
T ss_pred chhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhh--h----------hHHhHHHHHHHHHHHh
Confidence 345677888999999999999999887762211111 12221 1 1111111222223333
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCcCCceE
Q 005728 280 LASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPL 331 (680)
Q Consensus 280 i~~~iy~~~~~~~~~~~wg~~~~~~~~~~~~~~l~~l~~~~~~~k~~RPqiL 331 (680)
+...++.+...+.++.+|+...+...+......+..+-..+.|.|+||||+|
T Consensus 426 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k~~~~~~~ 477 (478)
T PF00324_consen 426 IFLGFYPFVPYPGPPDNWGAISFIAAYIIVVIFLLLYVGYKIIKKTKRPQLL 477 (478)
T ss_pred hhhhhcccccccCCCcccCHHHHHHHHHHHHHHHhhheeEEEEEECCccccc
Confidence 4444555566778889999999999999888888888888899999999975
No 13
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.93 E-value=4.8e-24 Score=236.97 Aligned_cols=227 Identities=14% Similarity=0.139 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHh--HhHHH---Hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELL--TDRLL---TA 134 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~--~~~~~---~~ 134 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+ ..+..+ .+.+. .+++. ..
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p-~~~~~~~~~p~~~~~~~ 264 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFP-ASVMAASGAPFAISAST 264 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHhcCCCcHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999996544 444554 44331 22332 22
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHH----h---
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI----I--- 207 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l----~--- 207 (680)
..+.....++.++++++++++.+++++..+|..++|||||.+|+++. +.||+|+|++|++++++++.++.. +
T Consensus 265 ~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~-k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~ 343 (435)
T PRK10435 265 ILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYG-EVDKNGIPKKGLLLAAVKMTALMILITLMNSS 343 (435)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH-hhCcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23333467778888999999999999999999999999999999865 557899999999998877644331 1
Q ss_pred -----hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005728 208 -----GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALAS 282 (680)
Q Consensus 208 -----~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~ 282 (680)
..++.+.++.+...++.|++++++.+++|+ +++++++ .++.+.++.+.+++.+.-.+|.....++.++.
T Consensus 344 ~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (435)
T PRK10435 344 GGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG---VNIRNFV---SLICSVLGCVFCFIALMGASSFELAGTFIVSL 417 (435)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 246789999999999999999999886542 2222211 35677777777777777778888888888888
Q ss_pred HHHHHHhhcCCCC
Q 005728 283 LIYYYVCLKGKAG 295 (680)
Q Consensus 283 ~iy~~~~~~~~~~ 295 (680)
+.|+.+.+|+.++
T Consensus 418 ~~~~~~~~~~~~~ 430 (435)
T PRK10435 418 IILMFYARKMHER 430 (435)
T ss_pred HHHHHHHHHhcch
Confidence 8888887776554
No 14
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.92 E-value=8.9e-24 Score=237.32 Aligned_cols=227 Identities=16% Similarity=0.220 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHH-HHHHhcccchhhHhH--hH-H---HH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVIS-VLLFGAAATREELLT--DR-L---LT 133 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~-~~~~g~~~~~~~~~~--~~-~---~~ 133 (680)
..++..++...+|+|.|||.+++++||+|| +|++|||++.++++++++|++. .+..+..++ +.+.+ ++ . ..
T Consensus 198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~-~~l~~~~~p~~~~~~~ 275 (473)
T TIGR00905 198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQ-QELANLPNPSMAAVLE 275 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCH-HHHhhCCCchHHHHHH
Confidence 457888899999999999999999999999 9999999999999999999954 445555443 33321 23 1 22
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh-----h
Q 005728 134 ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----G 208 (680)
Q Consensus 134 ~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~-----~ 208 (680)
...+.....++.++++++++++.++.+.+.||++|+|||||.+|+++. +.+++++|++|++++++++.++.++ +
T Consensus 276 ~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~-~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~ 354 (473)
T TIGR00905 276 MIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFG-RVNKNGAPSVALLLTNILIQLFLLLTLLTSS 354 (473)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH-hhCccCCCHHHHHHHHHHHHHHHHHHHccHH
Confidence 333433457788889999999999999999999999999999998765 4456799999999999887654432 5
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKF-HHWSLSLLGSVFCIVIMFLISW---SFTVVSLALASLI 284 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~-~~~~~~llg~v~~~~~~~~i~~---~~~~i~~~i~~~i 284 (680)
.++.+.++.++.+++.|++++++.+++|+++. +++ .+. ..+++++++.+.|+++.+..++ .+.++++++|+++
T Consensus 355 ~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (473)
T TIGR00905 355 AYNVLVSLAVVMILVPYLLSAAYLLKLAKVGT--YPK-IKNRKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIF 431 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ccc-cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999987641 111 222 2567889999998887776654 4556667788888
Q ss_pred HHHHhhcCC
Q 005728 285 YYYVCLKGK 293 (680)
Q Consensus 285 y~~~~~~~~ 293 (680)
|.+..++++
T Consensus 432 y~~~~~~~~ 440 (473)
T TIGR00905 432 YGRARKERG 440 (473)
T ss_pred HHHHHHhcC
Confidence 887666543
No 15
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=234.07 Aligned_cols=232 Identities=17% Similarity=0.225 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHhHhH----HHHhhcc
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELLTDR----LLTATIA 137 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~~~~----~~~~~~~ 137 (680)
.+..+|-..+|+|.||+.....+||+|||+||+|||+.+|+.+++++|++..+ .+++..+++...++. +.....|
T Consensus 205 ~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G 284 (479)
T KOG1287|consen 205 NIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILG 284 (479)
T ss_pred HHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999996544 455555444433332 3334455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 005728 138 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTI 217 (680)
Q Consensus 138 ~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~ 217 (680)
.. ++++-+.+.++++|+.|+.+.+.||+++++||+|.+|..+...+.++.+|+.|+++++.++++..++++++.+.+..
T Consensus 285 ~~-~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~ 363 (479)
T KOG1287|consen 285 VF-AWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYV 363 (479)
T ss_pred ch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44 58899999999999999999999999999999999999988778788899999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhh
Q 005728 218 TMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFL---IS----WSFTVVSLALASLIYYYVCL 290 (680)
Q Consensus 218 s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~---i~----~~~~~i~~~i~~~iy~~~~~ 290 (680)
++.+.+.+.+..++.+++|+++++ ..|++|.|-. ++++-.+.|+.+... .+ ..+.++.++.|+.+|+...+
T Consensus 364 sf~~~l~~~l~~~gll~lR~k~p~-~~rPiKvpl~-~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~ 441 (479)
T KOG1287|consen 364 SFAYWLFRGLSMAGLLWLRWKHPP-LPRPIKVPLF-IPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIH 441 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-CCCCEeeeee-hHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEE
Confidence 999999999999999999998644 6667998732 234444444443332 12 34555666777888877766
Q ss_pred cCCCCCC
Q 005728 291 KGKAGDW 297 (680)
Q Consensus 291 ~~~~~~w 297 (680)
.+.++.|
T Consensus 442 ~~~~p~~ 448 (479)
T KOG1287|consen 442 WKKKPKW 448 (479)
T ss_pred ecCCcHH
Confidence 6655554
No 16
>PRK15049 L-asparagine permease; Provisional
Probab=99.92 E-value=7.6e-24 Score=238.80 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHh-cccchhhHh-HhHHHH--hhc
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFG-AAATREELL-TDRLLT--ATI 136 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g-~~~~~~~~~-~~~~~~--~~~ 136 (680)
..+++.++...+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++....+. ..++.+... .+++.. ...
T Consensus 219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~ 298 (499)
T PRK15049 219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL 298 (499)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc
Confidence 3456677778999999999999999999999999999999999999999996555444 444333211 123322 222
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh------hh
Q 005728 137 A-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------GN 209 (680)
Q Consensus 137 ~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------~~ 209 (680)
+ ...+.++.+.++++.+++.++.+++++|++|+|||||.+|+++. +.+|+++|++|++++++++++..++ ..
T Consensus 299 g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~-kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~ 377 (499)
T PRK15049 299 GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMA-KMSRQHVPYAGILATLVVYVVGVFLNYLVPSRV 377 (499)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH-HhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 2 22357888999999999999999999999999999999998765 4568999999999998876554322 23
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCC--CCCCCcccc-hhhHHHHHHHHHHHHHHH
Q 005728 210 LDLITPTITMFFLLCYSGVNLSCFLLDLLDAP--SWRPRWKFH-HWSLSLLGSVFCIVIMFL 268 (680)
Q Consensus 210 ~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p--~~rp~fk~~-~~~~~llg~v~~~~~~~~ 268 (680)
++.+.++.+++.+++|++++++.+++|++.++ ..+++||.| .|+.++++++++++++..
T Consensus 378 f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~ 439 (499)
T PRK15049 378 FEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVL 439 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999875322 223468887 777888888777655544
No 17
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.92 E-value=6.2e-24 Score=238.43 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHH-HhcccchhhH-hHhHHH---Hhhc
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLL-FGAAATREEL-LTDRLL---TATI 136 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~-~g~~~~~~~~-~~~~~~---~~~~ 136 (680)
.+++.++...+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++..+. .+..+..+.. ..+++. ....
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g 285 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG 285 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC
Confidence 4688888999999999999999999999999999999999999999999965444 4444433322 122332 2222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhh------hh
Q 005728 137 AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG------NL 210 (680)
Q Consensus 137 ~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~------~~ 210 (680)
+.....++.++++++++++.+++++++||++++|||||.+|+++. +.+|+++|++|++++.+++++..+.. .+
T Consensus 286 ~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~-~~~~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~ 364 (471)
T PRK11387 286 IPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFA-RLTKRGIPLTALSVSMLGGLLALFSSVVAPDTVF 364 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHH-HhCCCCCcHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 223357788899999999999999999999999999999998765 44688999999998876654433321 24
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCC----CCCcccc-hhhHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 005728 211 DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW----RPRWKFH-HWSLSLLGSVFCIVIMFLIS--------WSFTVVS 277 (680)
Q Consensus 211 ~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~----rp~fk~~-~~~~~llg~v~~~~~~~~i~--------~~~~~i~ 277 (680)
+.+.++.++..++.|++++++.+++|+++++.. +++||.+ ++++++++++.|+++++... .+..+.+
T Consensus 365 ~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T PRK11387 365 VALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPF 444 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567788999999999999999999988753221 2458876 67888888888876655331 1233444
Q ss_pred HHHHHHHHHHHhh
Q 005728 278 LALASLIYYYVCL 290 (680)
Q Consensus 278 ~~i~~~iy~~~~~ 290 (680)
++++++.|.++++
T Consensus 445 ~~~~~~~~~~~~~ 457 (471)
T PRK11387 445 VALCYGAYYLTQR 457 (471)
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555433
No 18
>PRK11021 putative transporter; Provisional
Probab=99.92 E-value=1.3e-23 Score=231.94 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHhH-hH---HHHhh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELLT-DR---LLTAT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~~-~~---~~~~~ 135 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++... ..+..+..+.... .+ .....
T Consensus 176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (410)
T PRK11021 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQL 255 (410)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999996443 3334433332111 11 12233
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh-----hhh
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----GNL 210 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~-----~~~ 210 (680)
.+.....++.+.++++++++.++.+.+.+|++++|||||.+|+++. +.+|+++|++|++++.+++.++.++ .++
T Consensus 256 ~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~-k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~ 334 (410)
T PRK11021 256 FGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLA-RLSARGVPVNALNAVLGCCAVSILLIYALGLNL 334 (410)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHH-hhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3433456777788899999999999999999999999999998765 4468899999999998877655433 467
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005728 211 DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCL 290 (680)
Q Consensus 211 ~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~~iy~~~~~ 290 (680)
+.+..+.+..+++.|++++++.+++++++ .+++++++++.|+++++..+|......+...+.+++.+.+
T Consensus 335 ~~l~~~~~~~~li~y~~~~~a~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T PRK11021 335 EALIAYANGIFVLIYLLCMLAACKLLKGR-----------YRPLAVLGCLLCLLLLVMLGWKMLYALIMLALLWLFLPKR 403 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999887542 1468999999999998888776544444444444444433
No 19
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.92 E-value=1e-23 Score=237.38 Aligned_cols=236 Identities=15% Similarity=0.130 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccc-hh-hHhH---------h
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT-RE-ELLT---------D 129 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~-~~-~~~~---------~ 129 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+.++...+ .+ .+.+ +
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 275 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAAS 275 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCC
Confidence 56788999999999999999999999999999999999999999999999976554444333 22 1111 2
Q ss_pred HHH--Hhhcc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHH
Q 005728 130 RLL--TATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI 206 (680)
Q Consensus 130 ~~~--~~~~~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l 206 (680)
++. ....+ .....++.++++++++++.++++++++|++++|||||.+|+++. +.+|+++|++|++++++++++..+
T Consensus 276 p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~-k~~~~~~P~~Ai~~~~~~~~l~~l 354 (478)
T TIGR00913 276 PFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFA-YVDRRGVPYVAVIVSSLFGLLAFL 354 (478)
T ss_pred cHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHH-hhCCCCCCHHHHHHHHHHHHHHHH
Confidence 222 12222 22356788889999999999999999999999999999998765 456889999999999988765443
Q ss_pred h-h-----hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcC----CCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHH----
Q 005728 207 I-G-----NLDLITPTITMFFLLCYSGVNLSCFLLDLLD----APSWRPRWKFH-HWSLSLLGSVFCIVIMFLISW---- 271 (680)
Q Consensus 207 ~-~-----~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~----~p~~rp~fk~~-~~~~~llg~v~~~~~~~~i~~---- 271 (680)
. + .++.+.++.+...++.|++++++.+++|++. .|+.+++||.| .++.++++++.|++++....+
T Consensus 355 ~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (478)
T TIGR00913 355 AVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFA 434 (478)
T ss_pred HHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 1 3677888999999999999999999988752 33445568887 677888888888766655422
Q ss_pred ---------HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 005728 272 ---------SFTVVSLALASLIYYYVCLKGKAGDW 297 (680)
Q Consensus 272 ---------~~~~i~~~i~~~iy~~~~~~~~~~~w 297 (680)
....+.+.+.+++|.+++.+++++.|
T Consensus 435 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (478)
T TIGR00913 435 PVKFSAKSFFEAYLSLPIFIALYIGHKVYKRDKLI 469 (478)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 22334445555566555554444444
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.92 E-value=1.1e-23 Score=234.70 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHH-HhcccchhhHh--HhHH--HHhh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLL-FGAAATREELL--TDRL--LTAT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~-~g~~~~~~~~~--~~~~--~~~~ 135 (680)
..+++.++...+|+|.|+|.++.++||+|||+|++|||+..++..+.++|++..+. .+.+++.+... ..++ ....
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 259 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLEL 259 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999975544 44444432111 1111 1222
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh------h
Q 005728 136 IA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------G 208 (680)
Q Consensus 136 ~~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------~ 208 (680)
.+ .....++.++++++.+++.|+++++++|++|+|||||.+|+.+. +.+|+++|++|++++++++++..+. .
T Consensus 260 ~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~-~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~ 338 (446)
T PRK10197 260 LNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMG-KINRSKTPYVAVLLSTGAAFLTVVVNYYAPAK 338 (446)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHH-hhCcCCCcHHHHHHHHHHHHHHHHHHhcChHH
Confidence 22 22357788888999999999999999999999999999998765 4568899999999998877655443 2
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhc-CCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLL-DAPSWRPRWKFH-HWSLSLLGSVFCIVIMFLIS-------WSFTVVSLA 279 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~-~~p~~rp~fk~~-~~~~~llg~v~~~~~~~~i~-------~~~~~i~~~ 279 (680)
.++.+.++.+..+++.|+++.++.+++|++ +.++.+.+||.| +|+.++++++.|++++.... ..+..+.++
T Consensus 339 ~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (446)
T PRK10197 339 VFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLA 418 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 478889999999999999999999999985 233334457776 77788888777765443321 223445556
Q ss_pred HHHHHHH-HHhhcCCCCCC
Q 005728 280 LASLIYY-YVCLKGKAGDW 297 (680)
Q Consensus 280 i~~~iy~-~~~~~~~~~~w 297 (680)
+++..|+ ...|-++.+.|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (446)
T PRK10197 419 IGIICTVPIMARWKKLVLW 437 (446)
T ss_pred HHHHhhhHHHhhhcccccC
Confidence 6666666 33333333333
No 21
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=225.40 Aligned_cols=208 Identities=15% Similarity=0.180 Sum_probs=175.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhH----------hHhH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL----------LTDR 130 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~----------~~~~ 130 (680)
+.++.+++...-|+|.|.|.+...|+|.+||+|++|||+...+..+.++|++.++++|.+.|.+.. ..+|
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SP 312 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASP 312 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCC
Confidence 779999999999999999999999999999999999999999999999999999999988776541 1224
Q ss_pred HHH--hhccch-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh
Q 005728 131 LLT--ATIAWP-FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII 207 (680)
Q Consensus 131 ~~~--~~~~~~-~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~ 207 (680)
++. ...|.+ .+.++++.++.+++|++|++++++||++|+||+||..|+.+. +.+|+|+|++|++++.+++++..+.
T Consensus 313 Fvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~-~~~r~GvP~~al~vt~~fg~lafl~ 391 (541)
T COG0833 313 FVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFA-KVDRRGVPLVALLVTLLFGLLAFLN 391 (541)
T ss_pred hhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHH-hhCCCCCchHHHHHHHHHHHHHHHH
Confidence 432 223332 378999999999999999999999999999999999999864 7899999999999999988766553
Q ss_pred h------hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCC----CCCCcccc-hhhHHHHHHHHHHHHHHHH
Q 005728 208 G------NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS----WRPRWKFH-HWSLSLLGSVFCIVIMFLI 269 (680)
Q Consensus 208 ~------~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~----~rp~fk~~-~~~~~llg~v~~~~~~~~i 269 (680)
. .++.+.+++++..+++|+.++++++++|++-... .+-+||.| .|+.+++|+++|+++++..
T Consensus 392 ~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q 464 (541)
T COG0833 392 SSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQ 464 (541)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHc
Confidence 1 4788999999999999999999999999863221 12347776 7899999999999887773
No 22
>PRK10836 lysine transporter; Provisional
Probab=99.91 E-value=4.7e-23 Score=232.36 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=162.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhh--Hh-------HhH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREE--LL-------TDR 130 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~--~~-------~~~ 130 (680)
+.+++.++...+|+|.|||.+++++||+|||+|++|||++.++++++++|++... +.+.++..+. .. .++
T Consensus 204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp 283 (489)
T PRK10836 204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSP 283 (489)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCc
Confidence 3456666777789999999999999999999999999999999999999996544 4444443221 11 122
Q ss_pred HHH--hhcc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh
Q 005728 131 LLT--ATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII 207 (680)
Q Consensus 131 ~~~--~~~~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~ 207 (680)
+.. ...+ ...+.++.++++++++++.|+.++++||++|+|||||.+|+.+. +.+|+++|++|+++++++++++.+.
T Consensus 284 ~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~-kv~~~~~P~~All~~~~~~~l~~l~ 362 (489)
T PRK10836 284 FTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFA-KLSRGGVPRNALYATTVIAGLCFLT 362 (489)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHH-hhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 221 1111 12356788888999999999999999999999999999998765 4568899999999999988766654
Q ss_pred h------hhhhHHhHHHHHHHHHHHhHHHHHHHHhhc---CCCCC-CCCcccc-hhhHHHHHHHHHHHHHHHH
Q 005728 208 G------NLDLITPTITMFFLLCYSGVNLSCFLLDLL---DAPSW-RPRWKFH-HWSLSLLGSVFCIVIMFLI 269 (680)
Q Consensus 208 ~------~~~~i~~l~s~~~l~~y~li~~a~~~lr~~---~~p~~-rp~fk~~-~~~~~llg~v~~~~~~~~i 269 (680)
. .++.+.++.++..++.|++++++.+++|++ +.|+. +++||.| .|+.++++.+.|+++++..
T Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~ 435 (489)
T PRK10836 363 SMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQ 435 (489)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 2 246678888999999999999999999885 23554 4679988 7788999999998877653
No 23
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.91 E-value=6.7e-23 Score=229.27 Aligned_cols=228 Identities=14% Similarity=0.164 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHh--HhHHHH--hhc
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRLLT--ATI 136 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~--~~~~~~--~~~ 136 (680)
..+++.++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+.+....+.+... .+++.. ...
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~ 277 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHM 277 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHc
Confidence 4478889999999999999999999999999999999999999999999996554444333333221 123221 222
Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh------hh
Q 005728 137 AWP-FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------GN 209 (680)
Q Consensus 137 ~~~-~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------~~ 209 (680)
+.+ ...++.+.++++.+++.++++++.+|++++|||||.+|+++. +.+|+++|++|++++.+++++..++ ..
T Consensus 278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~-kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~ 356 (457)
T PRK10580 278 GITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFS-KTSRRGIPWVTVLVMTTALLFAVYLNYIMPENV 356 (457)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHH-hhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 222 346677778889999999999999999999999999998765 4567899999999997655443322 23
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCC-C-CCCcccc-hhhHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 005728 210 LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-W-RPRWKFH-HWSLSLLGSVFCIVIMFLI--------SWSFTVVSL 278 (680)
Q Consensus 210 ~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~-~-rp~fk~~-~~~~~llg~v~~~~~~~~i--------~~~~~~i~~ 278 (680)
++.+.++.+...+++|++++++.+++|++.+++ + +++||.| .++.+++++++|++++... .....++++
T Consensus 357 ~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 436 (457)
T PRK10580 357 FLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWI 436 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHH
Confidence 567888999999999999999999999774332 2 2468877 6778888888887766543 224455666
Q ss_pred HHHHHHHHHHh
Q 005728 279 ALASLIYYYVC 289 (680)
Q Consensus 279 ~i~~~iy~~~~ 289 (680)
+++.+.|..++
T Consensus 437 ~~~~~~y~~~~ 447 (457)
T PRK10580 437 VLLLIGWMFKR 447 (457)
T ss_pred HHHHHHHHHHh
Confidence 67777776543
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=99.91 E-value=7.7e-23 Score=228.64 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=171.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHh--HhHHHH--hhc
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRLLT--ATI 136 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~--~~~~~~--~~~ 136 (680)
+.++..++...+|+|.|+|.++..+||+|||+|++|||+..++..+.++|++..+++..+.+.+... .+++.. ...
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~ 278 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI 278 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999997555444444333332 123322 122
Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHH---H-h----
Q 005728 137 AWP-FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCV---I-I---- 207 (680)
Q Consensus 137 ~~~-~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~---l-~---- 207 (680)
+.+ .+.++.+.++++.+++.|+.++++||++++|||||.+|+++. +.+|+|+|++|++++.++..+.. + .
T Consensus 279 g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~-~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~ 357 (461)
T PRK10746 279 GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMA-KVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQ 357 (461)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHH-HhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 222 246788888999999999999999999999999999999865 55689999999998865433221 1 1
Q ss_pred hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCC-CCCCcccc-hhhHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 005728 208 GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-WRPRWKFH-HWSLSLLGSVFCIVIMFLI--------SWSFTVVS 277 (680)
Q Consensus 208 ~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~-~rp~fk~~-~~~~~llg~v~~~~~~~~i--------~~~~~~i~ 277 (680)
..++.+.+++++..++.|++++++.+++|++.+.+ .+++||.+ .|+.+++++++++++++.. +....+++
T Consensus 358 ~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (461)
T PRK10746 358 RVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIF 437 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHH
Confidence 13577888999999999999999999999875433 23458866 6677777777776654433 23344455
Q ss_pred HHHHHHHHHHHhhcC
Q 005728 278 LALASLIYYYVCLKG 292 (680)
Q Consensus 278 ~~i~~~iy~~~~~~~ 292 (680)
++++.+.|+++++.+
T Consensus 438 ~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 438 LLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHhhh
Confidence 556666666655443
No 25
>PRK10249 phenylalanine transporter; Provisional
Probab=99.91 E-value=5.8e-23 Score=229.64 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHH-HHHhcccchhhHh-HhHHHH---hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISV-LLFGAAATREELL-TDRLLT---AT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~-~~~g~~~~~~~~~-~~~~~~---~~ 135 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++.. ...+..++.+... ++++.. ..
T Consensus 208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 287 (458)
T PRK10249 208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNL 287 (458)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHc
Confidence 457889999999999999999999999999999999999999999999999644 4444444433211 123321 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhh------h
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG------N 209 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~------~ 209 (680)
.+...+.++.+.++++.+++.+++++++||++|+|||||.+|+.+. +.+|+++|++|++++++++.++.++. .
T Consensus 288 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~-kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~ 366 (458)
T PRK10249 288 DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLT-RVSRRGVPINSLMLSGAITSLVVLINYLLPQKA 366 (458)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHH-HhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 2222356778888899999999999999999999999999998765 44688999999999999887655432 3
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHhhc-CCCCCCCCcccc-hhhHHHHHHHHHHHHHHH
Q 005728 210 LDLITPTITMFFLLCYSGVNLSCFLLDLL-DAPSWRPRWKFH-HWSLSLLGSVFCIVIMFL 268 (680)
Q Consensus 210 ~~~i~~l~s~~~l~~y~li~~a~~~lr~~-~~p~~rp~fk~~-~~~~~llg~v~~~~~~~~ 268 (680)
++.+.++.+...+++|+++.++++++|++ ++++..++||.+ +|+.++++++.++++++.
T Consensus 367 f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~ 427 (458)
T PRK10249 367 FGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLL 427 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999998864 233334568877 677787877777765544
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.91 E-value=9.8e-23 Score=228.58 Aligned_cols=204 Identities=16% Similarity=0.242 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhH--hHHHH--hh-
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT--AT- 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~--~~~~~--~~- 135 (680)
..+++.++...+|+|.|+|.+++++||+|||+|++|||+..+++.+.++|++....+....+.+.... +++.. ..
T Consensus 210 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 289 (469)
T PRK11049 210 LSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLV 289 (469)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHc
Confidence 34689999999999999999999999999999999999998888999999976555554444443321 23321 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHH---HHh-----
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGC---VII----- 207 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~---~l~----- 207 (680)
.+.....++.+.++++.+++.++.+++.+|++++|||||.+|+.+. +.+|+++|++|++++++++.+. ..+
T Consensus 290 g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~-kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~ 368 (469)
T PRK11049 290 GLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFA-KLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVI 368 (469)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH-hhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 2222356788888999999999999999999999999999998765 4567899999999988765432 112
Q ss_pred hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCC-C-CCcccc-hhhHHHHHHHHHHHHH
Q 005728 208 GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW-R-PRWKFH-HWSLSLLGSVFCIVIM 266 (680)
Q Consensus 208 ~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~-r-p~fk~~-~~~~~llg~v~~~~~~ 266 (680)
..++.+.++.++.+++.|+++.++.+++|+++ |+. | ++||.| +++.++++.+++.+++
T Consensus 369 ~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~-p~~~~~~pf~~p~~~~~~~~~~~~~~~~~ 429 (469)
T PRK11049 369 GAFTLVTTVSAILFMFVWTIILCSYLVYRKQR-PHLHEKSIYKMPLGKLMCWVCMAFFAFVL 429 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCccCcCcchHHHHHHHHHHHHH
Confidence 23677778888899999999999999998874 443 3 358876 5566666666665443
No 27
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-23 Score=222.50 Aligned_cols=258 Identities=19% Similarity=0.185 Sum_probs=188.6
Q ss_pred hhhhcccccccccccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHH
Q 005728 23 YFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAA 102 (680)
Q Consensus 23 ~~~~~g~~g~~~~~~~~N~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~a 102 (680)
+....|+.+-...+-.+|++.+ |+..|+| ..+++.++.+.+|||.|+|.+...++|+|||+|++|||+-.-
T Consensus 173 ~ll~~g~~~~~~~~g~snl~~h-------GGffP~G--~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V 243 (462)
T COG1113 173 VLLFGGFGGGGGAAGFSNLWDH-------GGFFPNG--FLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSV 243 (462)
T ss_pred HHHhhccCCCCCCccccccccC-------CCcCCCc--hHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhh
Confidence 3344455444334445677754 3345667 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHhcccchhhH-hHhHHHHh----hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC
Q 005728 103 TLTTTALYVISVL-LFGAAATREEL-LTDRLLTA----TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDIL 176 (680)
Q Consensus 103 i~i~~v~Yil~~~-~~g~~~~~~~~-~~~~~~~~----~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~l 176 (680)
+....++|+...+ ++...|+++.. ..+|+++. ..++. +.++++.++.+.+|+.|+.+++.+|++|++|++|..
T Consensus 244 ~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~A-a~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~A 322 (462)
T COG1113 244 IWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFA-AGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDA 322 (462)
T ss_pred hHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCccc-ccceeEEEeechhhcccccccccchHHHHHhhcCcc
Confidence 9999999996554 44555554322 22355432 23333 567888999999999999999999999999999999
Q ss_pred CccccccccCCCCchHHHHHHHHHHHHHHHh------hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCC-CCCCccc
Q 005728 177 PVLNYFKVAEGREPHIATFFTAFICIGCVII------GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-WRPRWKF 249 (680)
Q Consensus 177 P~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~-~rp~fk~ 249 (680)
|+.+ .+.+|+++|++|++++.++..+..++ ..++.+.+.++..++..|+++.++.+++|+.++.. .+++||+
T Consensus 323 Pk~~-~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm 401 (462)
T COG1113 323 PKAF-AKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKM 401 (462)
T ss_pred cHhH-hhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccccc
Confidence 9975 47899999999999998876655544 34688889999999999999999999999853222 3456888
Q ss_pred c-hhhHHHHHHHHHHHH---HHHH-----HHHHHHHHHHHHHHHHHHHhhc
Q 005728 250 H-HWSLSLLGSVFCIVI---MFLI-----SWSFTVVSLALASLIYYYVCLK 291 (680)
Q Consensus 250 ~-~~~~~llg~v~~~~~---~~~i-----~~~~~~i~~~i~~~iy~~~~~~ 291 (680)
| .++...++.++.+.+ |++. ......+|+++..+.|++.++|
T Consensus 402 ~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~ 452 (462)
T COG1113 402 PLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKK 452 (462)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 7 565555555444433 3331 2344455555555555544433
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.90 E-value=1e-22 Score=227.57 Aligned_cols=205 Identities=13% Similarity=0.099 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHH-HhcccchhhH-hH-hHHH--Hhh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLL-FGAAATREEL-LT-DRLL--TAT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~-~g~~~~~~~~-~~-~~~~--~~~ 135 (680)
..++..++...+|+|.|+|.+++++||+|||+|++|||+..++..++++|++.... .+..++++.. .+ +++. ...
T Consensus 200 ~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~ 279 (452)
T TIGR01773 200 IGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLEL 279 (452)
T ss_pred HHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999965443 4444433221 11 1222 122
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhh------
Q 005728 136 IA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG------ 208 (680)
Q Consensus 136 ~~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~------ 208 (680)
.+ .....++.++++++++++.++.+++++|++++|||||.+|+.+. +.+|+++|++|++++++++++..++.
T Consensus 280 ~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~-~v~~~~~P~~Ail~~~~~~~~~~l~~~~~~~~ 358 (452)
T TIGR01773 280 LGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFM-KLNKKGVPVQAVLASTFFSFLTVVVNYFAPDK 358 (452)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHH-hhCCCCCcHHHHHHHHHHHHHHHHHHccCHHH
Confidence 22 22356778888999999999999999999999999999998765 44688999999999998887665441
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCC-Ccccc-hhhHHHHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRP-RWKFH-HWSLSLLGSVFCIVIM 266 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp-~fk~~-~~~~~llg~v~~~~~~ 266 (680)
.++.+.++.+...++.|+++.++.+++|++.++..|| +++.+ .|+.++++++.+++++
T Consensus 359 ~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (452)
T TIGR01773 359 VFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGIL 418 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHH
Confidence 2466777888888999999999999988764332233 24434 5566666655554443
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.90 E-value=2.8e-22 Score=224.90 Aligned_cols=224 Identities=18% Similarity=0.191 Sum_probs=171.9
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhH-hHhH----HHH
Q 005728 60 VDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREEL-LTDR----LLT 133 (680)
Q Consensus 60 ~~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~-~~~~----~~~ 133 (680)
...++..++...+|+|.|+|.++.++||.|| +|++||++..++++++++|++ ..+..+..+..+.. ..++ ...
T Consensus 193 ~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~ 271 (468)
T TIGR03810 193 VMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE 271 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH
Confidence 3456778889999999999999999999998 799999999999999999995 45555655533321 1122 222
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh-----h
Q 005728 134 ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----G 208 (680)
Q Consensus 134 ~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~-----~ 208 (680)
...+.....++.++++++++++.++++.+++|++++|||||.+|+++. +.+|+++|++|++++++++.++.++ .
T Consensus 272 ~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~-k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~ 350 (468)
T TIGR03810 272 HMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFG-KENANGAPTNALWLTNGLIQIFLLTTLFSEQ 350 (468)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH-hhCCCCCCHHHHHHHHHHHHHHHHHHHccHH
Confidence 333434467889999999999999999999999999999999999865 4568899999999998887655433 4
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFT---VVSLALASLIY 285 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~---~i~~~i~~~iy 285 (680)
.++.+.++.+..+++.|++++++.+++|++++++..++ +.+.++.++.+.|+++++..++... .+.+++++.+|
T Consensus 351 ~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y 427 (468)
T TIGR03810 351 AYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRR---KQLLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFY 427 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999987642221111 2356788899999888888776433 34445566666
Q ss_pred HHH
Q 005728 286 YYV 288 (680)
Q Consensus 286 ~~~ 288 (680)
++.
T Consensus 428 ~~~ 430 (468)
T TIGR03810 428 ARA 430 (468)
T ss_pred HHH
Confidence 553
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.90 E-value=1.9e-22 Score=225.40 Aligned_cols=208 Identities=12% Similarity=0.141 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHh--HhHHHH---hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRLLT---AT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~--~~~~~~---~~ 135 (680)
+.++..+++..+|+|.|+|.+++++||+|||+|++|||++.++..+.++|++.........+.+.+. .+|+.. ..
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~ 278 (456)
T PRK10238 199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL 278 (456)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc
Confidence 4567788888999999999999999999999999999999999999999996544333333333321 123322 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh------hh
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------GN 209 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------~~ 209 (680)
.....+.++.+.++++.+++.+++++++||++|+|||||.+|+++. +.+|+++|++|++++++++.++.++ ..
T Consensus 279 g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~-kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~ 357 (456)
T PRK10238 279 GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALA-SVDKRGVPVNTILVSALVTALCVLINYLAPESA 357 (456)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH-hhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 2222356778888999999999999999999999999999998765 4568899999999999988766543 34
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCC-CCCcccc-hhhHHHHHHHHHHHHHHHH
Q 005728 210 LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW-RPRWKFH-HWSLSLLGSVFCIVIMFLI 269 (680)
Q Consensus 210 ~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~-rp~fk~~-~~~~~llg~v~~~~~~~~i 269 (680)
++.+.++++.+.+++|+++.++.+++|+++++.- .++|+.+ .|+.+++++++++++++..
T Consensus 358 f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (456)
T PRK10238 358 FGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIM 419 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999988643221 2235543 6667777777766555443
No 31
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.90 E-value=7e-23 Score=229.32 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=166.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhh--Hh-----HhHHHH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREE--LL-----TDRLLT 133 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~--~~-----~~~~~~ 133 (680)
+.|++++++.++|+|+|+|.++..+||+|||+|+||+|+..++.+++++|++..++++...+.+. +. .+++..
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~i 310 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVI 310 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHH
Confidence 66899999999999999999999999999999999999999999999999988777777766654 32 234442
Q ss_pred h-hccch--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 005728 134 A-TIAWP--FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNL 210 (680)
Q Consensus 134 ~-~~~~~--~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~ 210 (680)
+ ...+. .+.++++++++++++++|+++++.||.+++||+||++|+++.. .+|+|+|++|++++++++.+..+..+.
T Consensus 311 ai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~-v~~~g~P~~a~~v~~~~~~l~~~~~~~ 389 (554)
T KOG1286|consen 311 AIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFAR-VDRRGVPLVAVLVSGLFGALAALNFSL 389 (554)
T ss_pred HHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhh-cCCCCCchhHHHHHHHHHHHHHHHhcc
Confidence 2 11111 1349999999999999999999999999999999999998764 455599999999999999888777655
Q ss_pred ------hhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCC----CCCcccc-hhhHHHHHHHHHHHHHHH
Q 005728 211 ------DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW----RPRWKFH-HWSLSLLGSVFCIVIMFL 268 (680)
Q Consensus 211 ------~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~----rp~fk~~-~~~~~llg~v~~~~~~~~ 268 (680)
+.+.++.++..++.|.+++++++++|+....+- +-+|+-+ .++.+..+.+++..+...
T Consensus 390 ~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~ 458 (554)
T KOG1286|consen 390 GAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLA 458 (554)
T ss_pred ccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999987642221 1124433 456666666666554433
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.89 E-value=9.9e-22 Score=221.92 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhH-hHh----HHHH--hhc
Q 005728 64 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL-LTD----RLLT--ATI 136 (680)
Q Consensus 64 f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~-~~~----~~~~--~~~ 136 (680)
....+..++|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+.++...+.+.. ..+ ++.. ...
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 275 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHF 275 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhh
Confidence 445666678999999999999999999999999999999999999999765555555443332 111 1111 111
Q ss_pred c---chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh------
Q 005728 137 A---WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------ 207 (680)
Q Consensus 137 ~---~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~------ 207 (680)
+ .....++.+.++++.+++.++++++.+|+++++||||.+|+.+. +.+|+++|++|++++++++.++.++
T Consensus 276 ~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~-k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~ 354 (507)
T TIGR00910 276 AHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFA-KMNKHEVPVPLVIIQGIITSIAGAILTFGGG 354 (507)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHH-hhCcCCCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1 11244677778888999999999999999999999999998765 4568999999999999887654322
Q ss_pred ---hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc-h----hhHHHHHHHHHHHHHH
Q 005728 208 ---GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-H----WSLSLLGSVFCIVIMF 267 (680)
Q Consensus 208 ---~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~-~----~~~~llg~v~~~~~~~ 267 (680)
..++.+.++.++.+++.|+++.++.+++|+++ |+.+++||.| . +.++.++++.+++.++
T Consensus 355 ~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~-p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 355 GNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKH-PDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCeEecCCccchhhHHHHHHHHHHHHHh
Confidence 12345566788899999999999999998874 5555668875 2 3456666666655444
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.89 E-value=1.6e-21 Score=219.12 Aligned_cols=197 Identities=16% Similarity=0.250 Sum_probs=146.2
Q ss_pred HHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHH-hcccchhhHhHhH----HHH--hhcc-chhH
Q 005728 70 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLF-GAAATREELLTDR----LLT--ATIA-WPFP 141 (680)
Q Consensus 70 i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~-g~~~~~~~~~~~~----~~~--~~~~-~~~~ 141 (680)
.++|+|.|+|.++..+||+|||+|++|||++.++++++++|++..+.+ +..++.+....++ +.. ...+ ....
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLG 281 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHH
Confidence 468899999999999999999999999999999999999999654444 4444333222111 111 1112 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh--------hhhhhH
Q 005728 142 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII--------GNLDLI 213 (680)
Q Consensus 142 ~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~--------~~~~~i 213 (680)
.++.+.+.++.+++.++.+.+.+|+++++||||.+|+.+. +.+|+++|++|++++++++.++.++ ..++.+
T Consensus 282 ~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~-kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l 360 (474)
T TIGR03813 282 PILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQ-KTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQIL 360 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5667777888999999999999999999999999998765 4568999999999998875443321 125678
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccch-----hhHHHHHHHHHHHHHHH
Q 005728 214 TPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHH-----WSLSLLGSVFCIVIMFL 268 (680)
Q Consensus 214 ~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~-----~~~~llg~v~~~~~~~~ 268 (680)
.++.+..++++|++++++.+++|+++ |+.+++||.|. |.+..++.+.+++.+..
T Consensus 361 ~~~~~~~~~i~y~~~~~a~i~lr~~~-~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 361 SQLTVILYLVMYLLMFASAIYLRYSQ-PDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVL 419 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCeEecCCccchhHHHHHHHHHHHHHHhe
Confidence 88888999999999999999988764 55555688752 34566666666655443
No 34
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.88 E-value=2.9e-21 Score=217.70 Aligned_cols=204 Identities=12% Similarity=0.071 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHhH----hHHH---Hh
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELLT----DRLL---TA 134 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~~----~~~~---~~ 134 (680)
++..++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+ ......+.+...+ +++. ..
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 297 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYN 297 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHH
Confidence 56667777889999999999999999999999999999999887776553222 1222222222211 1322 12
Q ss_pred hccc-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--ccccccccCCCCchHHHHHHHHHHHHHHHh----
Q 005728 135 TIAW-PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP--VLNYFKVAEGREPHIATFFTAFICIGCVII---- 207 (680)
Q Consensus 135 ~~~~-~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP--~~~~~~~~k~~~P~~Aill~~~i~~i~~l~---- 207 (680)
..+. ....++.+.++++.+++.++++++.||++++|||||.+| +.+.+.++|+++|++|++++++++.++.++
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~ 377 (482)
T TIGR00907 298 ALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGS 377 (482)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 2232 234567788889999999999999999999999999999 665544556699999999999888765544
Q ss_pred -hhhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc--hhhHHHHHHHHHHHHHHH
Q 005728 208 -GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH--HWSLSLLGSVFCIVIMFL 268 (680)
Q Consensus 208 -~~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~--~~~~~llg~v~~~~~~~~ 268 (680)
..++.+.++.+.+++++|+++.++.++.|+ ++..+++||.+ .++++.++++.+.+.+..
T Consensus 378 ~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~--~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~ 439 (482)
T TIGR00907 378 STAFQAIFSVCTVALDVSYVIPIICKLAKGR--NTIAPGPFWLGKYGFFVNAVAVAWTVFSSVL 439 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcCCcchHHHHHHHHHHHHHHHhh
Confidence 257889999999999999998766654332 33334458774 345566666555544433
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.86 E-value=4.6e-20 Score=208.40 Aligned_cols=200 Identities=13% Similarity=0.175 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhH-------h-HHH-
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT-------D-RLL- 132 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~-------~-~~~- 132 (680)
.+++.++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+.++...+.+.... + ++.
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVL 290 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHH
Confidence 4688888899999999999999999999999999999999999999999977666665544332211 0 110
Q ss_pred Hhh------------------ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHH
Q 005728 133 TAT------------------IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIAT 194 (680)
Q Consensus 133 ~~~------------------~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Ai 194 (680)
... .+.....++.++++++.+++.++++++.+|.++++++||.+|+.+. +.+|+|+|++|+
T Consensus 291 ~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~-k~nk~g~P~~a~ 369 (496)
T PRK15238 291 MNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMT-KLNKNGMPANAM 369 (496)
T ss_pred HHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHH-hhCcCCCcHHHH
Confidence 000 0111233567788889999999999999999999999999999865 556999999999
Q ss_pred HHHHHHHHHHHHhhh---------hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc-h----hhHHHHHHH
Q 005728 195 FFTAFICIGCVIIGN---------LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-H----WSLSLLGSV 260 (680)
Q Consensus 195 ll~~~i~~i~~l~~~---------~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~-~----~~~~llg~v 260 (680)
+++++++.++.++.. ++.+.++.++.+++.|++++++.+++|+ +|+.+++|+.+ . ++.++++.+
T Consensus 370 ~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~--~~~~~r~~~~~~~~~~~~~~~~~~~~ 447 (496)
T PRK15238 370 WLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKK--KKDIDRPFVVFKTKKSTLIATIVVVL 447 (496)
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCceecCCcceehhHHHHHHH
Confidence 999887765533211 5778899999999999999999999876 35555455542 2 334444444
Q ss_pred HHHH
Q 005728 261 FCIV 264 (680)
Q Consensus 261 ~~~~ 264 (680)
.+++
T Consensus 448 ~~~~ 451 (496)
T PRK15238 448 VVGF 451 (496)
T ss_pred HHHH
Confidence 4443
No 36
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.85 E-value=3.9e-20 Score=207.94 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhh--HhH--hHH-HHhh
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREE--LLT--DRL-LTAT 135 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~--~~~--~~~-~~~~ 135 (680)
..|..++...+|+|+|+|.+++++||+|||+|++|||++.++++++++|++..+ .+...++.+. ... .+. ....
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 292 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAV 292 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHH
Confidence 457777788899999999999999999999999999999999999887774322 2222222111 111 121 1222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCc--cccccccCCCCchHHHHHHHHHHHHHHHh-----h
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPV--LNYFKVAEGREPHIATFFTAFICIGCVII-----G 208 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~--~~~~~~~k~~~P~~Aill~~~i~~i~~l~-----~ 208 (680)
.+.....++.+.++++.+++.++++.++||++|++||||.+|+ ++.+.++|+++|++|+++++++++++.++ .
T Consensus 293 ~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~ 372 (475)
T TIGR03428 293 LDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSA 372 (475)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHH
Confidence 2222234555667788999999999999999999999999997 34444568899999999999988766554 2
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcC-CC----CCCCCcccch--hhHHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLD-AP----SWRPRWKFHH--WSLSLLGSVFCIV 264 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~-~p----~~rp~fk~~~--~~~~llg~v~~~~ 264 (680)
.++.+.++.+++.+++|+++.+..+..|++. ++ ..+.+|+++. +.+.+++++.+++
T Consensus 373 af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~ 435 (475)
T TIGR03428 373 LFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGAL 435 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence 4678899999999999999887777666542 11 1234477652 3344444444433
No 37
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.83 E-value=8.6e-19 Score=196.38 Aligned_cols=188 Identities=23% Similarity=0.278 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchh-hHhH---hHHH---Hh
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATRE-ELLT---DRLL---TA 134 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~-~~~~---~~~~---~~ 134 (680)
.++..++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+.+....+.+ .... .++. ..
T Consensus 201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 280 (466)
T COG0531 201 GGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALF 280 (466)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHH
Confidence 368889999999999999999999999999999999999999999999996555444444332 2211 2322 22
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhh-----h
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG-----N 209 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~-----~ 209 (680)
..+.....++.++++++++++.+++..+.+|++++|||||.+|+.+.+.++++++|++|++++++++..+.+.. .
T Consensus 281 ~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~ 360 (466)
T COG0531 281 GGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIA 360 (466)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccH
Confidence 23323468889999999999999999999999999999999999766556677899999999999988333322 3
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc
Q 005728 210 LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH 250 (680)
Q Consensus 210 ~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~ 250 (680)
++.+..+.+..+++.|.+.+++.+.+|++ .|+.+++++.+
T Consensus 361 ~~~l~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~ 400 (466)
T COG0531 361 FNALVSLASVAFLIAYLLVALALLVLRRK-KPDLKRPFRLP 400 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccc
Confidence 57899999999999999999999999887 34444444443
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.79 E-value=4.8e-18 Score=188.46 Aligned_cols=198 Identities=21% Similarity=0.281 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhH-hHh-------HHHHh
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL-LTD-------RLLTA 134 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~-~~~-------~~~~~ 134 (680)
+++.++...+|+|.|+|++++++||.|| |++|||++.+++++.++|++....+....+.+.. ..+ .+...
T Consensus 189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
T PF13520_consen 189 GFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASA 266 (426)
T ss_dssp HHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHH
T ss_pred chhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcc
Confidence 5788999999999999999999999777 8999999999999999999754444444333332 211 12223
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHH-h-----h
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI-I-----G 208 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l-~-----~ 208 (680)
..+.....++.++++++++++.++.+.+++|++++|||||.+|+.+.+. +|+++|++|+++.++++.++.+ + .
T Consensus 267 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~-~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~ 345 (426)
T PF13520_consen 267 VGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKV-NKFGTPYNAIILVAVISSILLLLFLFIPQS 345 (426)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTT-SSSSSCHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred ccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhc-cccCCceeeehhhhHHHHHHHHHHHhhhHH
Confidence 3333457888999999999999999999999999999999999876544 4999999999999999865543 2 2
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIM 266 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~ 266 (680)
.++.+.++.++..++.|.+..++++++|+++ |+.++ +.+.+.+++++++.+++.+
T Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r--~~~~~~~~i~~~~~~~~~~ 400 (426)
T PF13520_consen 346 SFDILVSLSSVGYLISYILVILAVLFLRRKR-PDLKR--IPYRPPVGIIGIIIILFVI 400 (426)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTHHHS-CSSGH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcCC--CCcchHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998874 33322 0112445555555554444
No 39
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.79 E-value=7.7e-19 Score=190.19 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHH-Hhccc-chhhHhHh----HH---H
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLL-FGAAA-TREELLTD----RL---L 132 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~-~g~~~-~~~~~~~~----~~---~ 132 (680)
+.|...|....|.++|+|+.+|++||+|||+|++|||++.++.+..++..+..+. ....+ +.+...++ |+ .
T Consensus 252 ~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~ 331 (550)
T KOG1289|consen 252 WAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIY 331 (550)
T ss_pred HHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHH
Confidence 6788888888899999999999999999999999999999999999998854433 33333 34444432 22 2
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccc-cccCC-CCchHHHHHHHHHHHHHHHh---
Q 005728 133 TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYF-KVAEG-REPHIATFFTAFICIGCVII--- 207 (680)
Q Consensus 133 ~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~-~~~k~-~~P~~Aill~~~i~~i~~l~--- 207 (680)
.+..|......+...++++.+.+..+++.+.||+.||.||||.+|.+... +.+++ ++|.+|+++..+++.++.++
T Consensus 332 ~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~ 411 (550)
T KOG1289|consen 332 YQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILA 411 (550)
T ss_pred HHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 33344333456677778888889999999999999999999999987554 44555 99999999999988666543
Q ss_pred --hhhhhHHhHHHHHHHHHHHhHHHHHHHHh
Q 005728 208 --GNLDLITPTITMFFLLCYSGVNLSCFLLD 236 (680)
Q Consensus 208 --~~~~~i~~l~s~~~l~~y~li~~a~~~lr 236 (680)
..++++.+++.++.+++|....+.-+...
T Consensus 412 s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~ 442 (550)
T KOG1289|consen 412 SATAFNALFSAAAIALFIAYAIPIFCRLFFG 442 (550)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhheeec
Confidence 34788999999999999987654444433
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.81 E-value=8.9e-08 Score=104.83 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHhhhhhh-hhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhHh---H----hHH-
Q 005728 62 WSFNALVGLFFPAVTGIM-AGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREELL---T----DRL- 131 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e-~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~~---~----~~~- 131 (680)
.++..++.+.+++| |++ ....+.+|.++++|++||+++.++.+++++|++ ..+..+..+.++... . +++
T Consensus 178 ~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 256 (381)
T TIGR00837 178 PYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLV 256 (381)
T ss_pred HHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHH
Confidence 36778888888888 665 588889999888999999999999999999995 566666666444220 0 121
Q ss_pred --HHhhc-cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhh
Q 005728 132 --LTATI-AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG 208 (680)
Q Consensus 132 --~~~~~-~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~ 208 (680)
..... ++....++.++.++++.++.+++..+.++.+..+ +...+++++ |..+.+++.+..+++..+.
T Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~---------~~~~~~~~~-~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 257 NALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADL---------FKFDDSKKG-RFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCcccCC-CchhhhhhHHhHHHHHHHh
Confidence 11222 2223577888889999999999988888654432 111112223 6677788877777766555
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHH---hhcCCCCCCCCcccc-hhhHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLL---DLLDAPSWRPRWKFH-HWSLSL 256 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~l---r~~~~p~~rp~fk~~-~~~~~l 256 (680)
....+..+...+++.++....+.++.. |++ .|+ ++||.| .+..+.
T Consensus 327 p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~-~~~--~~~~~~~~~~~~~ 375 (381)
T TIGR00837 327 PEGFLYAIGYAGLAATIWAVIIPALLAWKARKK-FPN--AGYRVWGGNKLLL 375 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCccccCChHHHH
Confidence 444555555555666665555555544 432 232 368877 554443
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.43 E-value=1.3e-05 Score=86.97 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhhh-------hhhhhhcccc-cccccccChhHHHHHHH-HHHHHHHH-HHHHHHhcccchhhHh----H
Q 005728 63 SFNALVGLFFPAVT-------GIMAGSNRSA-SLKDTQRSIPIGTLAAT-LTTTALYV-ISVLLFGAAATREELL----T 128 (680)
Q Consensus 63 ~f~~~~~i~f~af~-------G~e~~a~~s~-E~knP~r~IP~a~~~ai-~i~~v~Yi-l~~~~~g~~~~~~~~~----~ 128 (680)
.|..++.--++++. |+-.+.++.+ |.|||++..|+.+..++ ..+.+.|+ .....+|..+...... .
T Consensus 175 ~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~ 254 (378)
T TIGR00796 175 AFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGA 254 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcH
Confidence 47777777777777 8888888888 99999999999999998 55555666 4555666655332111 1
Q ss_pred ---hHHHHhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHH
Q 005728 129 ---DRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCV 205 (680)
Q Consensus 129 ---~~~~~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~ 205 (680)
.......+|..+..++.+.++++|++++++.+.+.++.+..+ ++| .|+++.++...+...++
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~-------------~~k--~~y~~~v~~~~l~s~~i 319 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKL-------------VPK--LSYKTWVIVFTLFSFIV 319 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCC--CCHHHHHHHHHHHHHHH
Confidence 123344566666789999999999999999999988754321 232 89999998888887777
Q ss_pred HhhhhhhHHhHHHHHHHHHHHhHHHHHHH--HhhcCCCCCCCCcccc
Q 005728 206 IIGNLDLITPTITMFFLLCYSGVNLSCFL--LDLLDAPSWRPRWKFH 250 (680)
Q Consensus 206 l~~~~~~i~~l~s~~~l~~y~li~~a~~~--lr~~~~p~~rp~fk~~ 250 (680)
....++.+..+..-...+.|-+.....+. +|++ .|+.+++||.+
T Consensus 320 a~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~-~~~~~~~y~~~ 365 (378)
T TIGR00796 320 ANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKL-WDSKRAVYQIT 365 (378)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeehH
Confidence 77888999888877777777555444444 4443 45545556653
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.68 E-value=0.058 Score=58.51 Aligned_cols=106 Identities=12% Similarity=-0.046 Sum_probs=66.3
Q ss_pred HHHHHHH-HHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhHh-HhHHHH--h--h
Q 005728 63 SFNALVG-LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREELL-TDRLLT--A--T 135 (680)
Q Consensus 63 ~f~~~~~-i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~~-~~~~~~--~--~ 135 (680)
+++.+.. ..+++|.|+|......+++||| |++||++..++++++++|++ ..+.++..++.+... ..|... . .
T Consensus 179 ~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~ 257 (359)
T TIGR00912 179 PILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLIN 257 (359)
T ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhh
Confidence 4444444 7889999999999999999996 56999999999999999995 455566665433211 112111 1 1
Q ss_pred ccc---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005728 136 IAW---PFPAVIHIGIILSTLGAALQSLTGAPRLLAA 169 (680)
Q Consensus 136 ~~~---~~~~ii~ig~~~s~lss~~~~l~~~sR~l~a 169 (680)
.+. -.-.++...-+.+.+......++.+.+.+..
T Consensus 258 ~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 258 IGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0122333334445555566677777776543
No 43
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=96.55 E-value=0.0062 Score=46.09 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=39.9
Q ss_pred cccc-hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcC
Q 005728 247 WKFH-HWSLSLLGSVFCIVIMFLI---SWSFTVVSLALASLIYYYVCLKG 292 (680)
Q Consensus 247 fk~~-~~~~~llg~v~~~~~~~~i---~~~~~~i~~~i~~~iy~~~~~~~ 292 (680)
||.| .|+++.+++++++++|..+ +|..+++|+++|+++|+.+.+|+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeec
Confidence 4556 6789999999999999886 58899999999999999887765
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=95.96 E-value=0.96 Score=49.82 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhH--h--H---hHHH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREEL--L--T---DRLL 132 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~--~--~---~~~~ 132 (680)
....+.++.+++++|.-...+..+....++-.|.+.|+++.+..+..++|++ ....+|..+..+.. . + +.+.
T Consensus 183 ~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~ 262 (394)
T PF03222_consen 183 WSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALV 262 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHH
Confidence 4567789999999999999999999999877889999999999999999995 44556656543321 0 0 1111
Q ss_pred ---Hhhc-cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005728 133 ---TATI-AWPFPAVIHIGIILSTLGAALQSLTGAPRLLA 168 (680)
Q Consensus 133 ---~~~~-~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~ 168 (680)
.... +.....+..+..++|..+|..+...+....+.
T Consensus 263 ~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 263 SALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 22224455666677777777777777666553
No 45
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=95.25 E-value=1.4 Score=48.84 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccC-hhHHHHHHHHHHHHHHHH-HHHHHhcccc
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRS-IPIGTLAATLTTTALYVI-SVLLFGAAAT 122 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~-IP~a~~~ai~i~~v~Yil-~~~~~g~~~~ 122 (680)
...++.++.+++++|++.-....+..|.+++.+. ++|++..+..+..++|+. ....++..+.
T Consensus 192 ~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~ 255 (415)
T COG0814 192 WKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGS 255 (415)
T ss_pred HHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3478899999999999999999999999988887 999999999999999994 5555555553
No 46
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=94.78 E-value=3.6 Score=46.71 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhhhhhhhhcccccccc-cccChhHHHHH-HHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHH
Q 005728 65 NALVGLFFPAVTGIMAGSNRSASLKD-TQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPA 142 (680)
Q Consensus 65 ~~~~~i~f~af~G~e~~a~~s~E~kn-P~r~IP~a~~~-ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 142 (680)
+.+++-++-+.||-|+.-. |+-+ .+|+|-++-.. ......+-|+.....+-..+ ....+++....-.|. .+
T Consensus 204 ~~~LG~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p---~~~~npFf~~~P~~~-~~ 276 (534)
T PF02705_consen 204 FFVLGAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP---EAVSNPFFLLIPEWL-LW 276 (534)
T ss_pred hhhcchHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc---chhhhHHHHHhHHHH-HH
Confidence 4567788889999998754 3333 45677777665 33334444654333332322 122455554433332 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccC---CC--CchHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 005728 143 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE---GR--EPHIATFFTAFICIGCVIIGNLDLITPTI 217 (680)
Q Consensus 143 ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k---~~--~P~~Aill~~~i~~i~~l~~~~~~i~~l~ 217 (680)
.+.+.+.++++-+.-+.+.++--+....-+-|.+|+..-...++ .+ .|..--++......+.+.+.+-+.+++..
T Consensus 277 p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AY 356 (534)
T PF02705_consen 277 PMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAY 356 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHH
Confidence 33333344444444555566666666777889999864321122 22 34332222222222333456667777766
Q ss_pred HHHHHHHHHhH
Q 005728 218 TMFFLLCYSGV 228 (680)
Q Consensus 218 s~~~l~~y~li 228 (680)
.++......++
T Consensus 357 GiAVt~tM~iT 367 (534)
T PF02705_consen 357 GIAVTGTMLIT 367 (534)
T ss_pred HHHHHHHHHHH
Confidence 66555554443
No 47
>PRK10483 tryptophan permease; Provisional
Probab=94.43 E-value=3.5 Score=45.55 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhHh---H----hHHHH-
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREELL---T----DRLLT- 133 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~~---~----~~~~~- 133 (680)
..+.++.+++++|.=-..+..+....++-.|.+.|+++.+..+..++|++ ...++|..++++... . +.+..
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~ 272 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQA 272 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHH
Confidence 46788888888888777888888877764569999999999999999996 566667666433210 1 11111
Q ss_pred --hhccc-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005728 134 --ATIAW-PFPAVIHIGIILSTLGAALQSLTGAPRLLAA 169 (680)
Q Consensus 134 --~~~~~-~~~~ii~ig~~~s~lss~~~~l~~~sR~l~a 169 (680)
...+. ....++.+...+|..+|.++...+....+..
T Consensus 273 l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 273 LSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 1233444555556666666666665555444
No 48
>PHA02764 hypothetical protein; Provisional
Probab=93.86 E-value=0.7 Score=48.24 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHH
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPA 142 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 142 (680)
....+.....-+|.=+++....++|.||-+|+-..|-..+.+.+.++-+.-. ..+ . .
T Consensus 182 t~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s-------y~n-~---------------~ 238 (399)
T PHA02764 182 TLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS-------YSN-L---------------N 238 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh-------hhh-H---------------H
Confidence 3445555566677889999999999999999988888887777665544321 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhh---hhHHhHHH-
Q 005728 143 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNL---DLITPTIT- 218 (680)
Q Consensus 143 ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~---~~i~~l~s- 218 (680)
+..+.+..-.+|-.....--.||+.++||-|+.+|..+. +-+.++|. +..++..+..++-++ +.-..+-+
T Consensus 239 il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~--k~~~nv~~----l~f~~~~~~~~~en~l~~~~sf~ldg~ 312 (399)
T PHA02764 239 ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFS--KINPNVLL----LIFIAETIANVLENLLGFNISFGLDGL 312 (399)
T ss_pred HHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHh--ccCCCcee----HHHHHHHHHHHHHHHhCCeeeeecccc
Confidence 001111112222233334457999999999999998643 44567887 333344444333221 11111222
Q ss_pred HHHHHHHHhHHHHHHHH
Q 005728 219 MFFLLCYSGVNLSCFLL 235 (680)
Q Consensus 219 ~~~l~~y~li~~a~~~l 235 (680)
.+....|.++.++..+.
T Consensus 313 lf~~wn~~~~a~~~~k~ 329 (399)
T PHA02764 313 LFIFWNFIIVAFAYLKL 329 (399)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 23445677776664443
No 49
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=93.84 E-value=2.9 Score=46.07 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhccc----cccccc---ccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhHh---Hh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRS----ASLKDT---QRSIPIGTLAATLTTTALYVI-SVLLFGAAATREELL---TD 129 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s----~E~knP---~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~~---~~ 129 (680)
..+++.+..+.++||.|+|.++.++ +|.+|| .|.+-|++..+.++..++|+. ...+++..++.+... ++
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 3578899999999999999999999 777755 567788888888889999985 455555555433211 11
Q ss_pred -HHH---Hhhccch-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 005728 130 -RLL---TATIAWP-FPAVIHIGIILSTLGAALQSLTGAPRLLAAIAN 172 (680)
Q Consensus 130 -~~~---~~~~~~~-~~~ii~ig~~~s~lss~~~~l~~~sR~l~amAr 172 (680)
... ......+ ...+..+...++..+|.++...+....+..+-+
T Consensus 265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 1111111 133334444556666667777776666666553
No 50
>PLN03074 auxin influx permease; Provisional
Probab=93.80 E-value=3.4 Score=46.73 Aligned_cols=51 Identities=16% Similarity=-0.036 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI 112 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil 112 (680)
+..++.+++.+.|+|.|.-....+-.|+|||+ +.|+....+.+.++++|+.
T Consensus 232 ~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~ 282 (473)
T PLN03074 232 LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLP 282 (473)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHH
Confidence 44677777889999999999999999999996 4888877778777777774
No 51
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=93.74 E-value=0.033 Score=61.25 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhccccccccccc--ChhHHHHHHHHHHHHHHHH
Q 005728 60 VDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQR--SIPIGTLAATLTTTALYVI 112 (680)
Q Consensus 60 ~~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r--~IP~a~~~ai~i~~v~Yil 112 (680)
...+++.+++++.|||.|......+..|+|+|++ ++-++...++.+++++|++
T Consensus 190 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~ 244 (409)
T PF01490_consen 190 SFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLL 244 (409)
T ss_pred hhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhh
Confidence 3468999999999999999999999999999886 5679999999999999994
No 52
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=93.60 E-value=9.7 Score=42.05 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhH--hH-h----HHH---
Q 005728 64 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREEL--LT-D----RLL--- 132 (680)
Q Consensus 64 f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~--~~-~----~~~--- 132 (680)
.+.++.++++||.=-..+..++.-.++-.|.+.|+++.+..+..++|++ ...+++..+.++.. .. + ...
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l 262 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQAL 262 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHH
Confidence 6788888999988888888888888887899999999999999999996 55666666643311 11 1 111
Q ss_pred Hhhcc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 005728 133 TATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 170 (680)
Q Consensus 133 ~~~~~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~am 170 (680)
....+ .....++.+...+|..+|.++...+....+..+
T Consensus 263 ~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~ 301 (403)
T PRK15132 263 REVVASPHVELAVHLFADLALATSFLGVALGLFDYLADL 301 (403)
T ss_pred HHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 112344555556677777777777766666554
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.20 E-value=1 Score=50.09 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH
Q 005728 65 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI 112 (680)
Q Consensus 65 ~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil 112 (680)
+.+++.+.|+|.|--...++=..+|+|++ .+|+.+.+..+++++|+.
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~ 277 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFP 277 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999 999999999999999993
No 54
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=92.91 E-value=0.045 Score=62.37 Aligned_cols=59 Identities=8% Similarity=-0.143 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCCCchhhHhHHHHHhcCCCceEEEccCCceeeeec
Q 005728 619 LKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLF 679 (680)
Q Consensus 619 ~~lneli~~~S~~a~Lv~~~LP~p~~~~~~~~Ym~~le~lt~~lpp~llVrG~~~~VlT~y 679 (680)
...|+.++..|.+++..-.+=|.|.+-.....|+++++.++++ ++.+.+|....+++.+
T Consensus 944 ~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t~~k~~~~~~~~--~~~~~~~k~~~~~~~~ 1002 (1075)
T KOG2082|consen 944 HDRNAPRRPSSLHSDEARPFETAPTKVQMTWTRDKYMASTSNP--AFSLSGFKDLFSMKPD 1002 (1075)
T ss_pred hhcCCccccccccccccccCCCCCcceechhhhhhHHHhccCC--cchhccCCcccccChh
Confidence 4456777777888888777722222223457899999999887 8999999998888765
No 55
>PTZ00206 amino acid transporter; Provisional
Probab=92.83 E-value=0.99 Score=50.92 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccc-cChhHHHHHHHHHHHHHHHH
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQ-RSIPIGTLAATLTTTALYVI 112 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~-r~IP~a~~~ai~i~~v~Yil 112 (680)
++..+++++.|||.+......+-.|+|||+ ++..+.+..++.+++++|.+
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~ 307 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVL 307 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999975 57888888999999999984
No 56
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=92.57 E-value=1.6 Score=38.96 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=61.7
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHHHhhhccccceEEEEecCC
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPN 409 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 409 (680)
+||.++.. +....+++.|..+.+.....+.++||...+.....++.++..+.+.+..++.++. +.++...+
T Consensus 2 Ilv~vd~s-------~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~ 72 (124)
T cd01987 2 ILVCISGG-------PNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAE--VVTLPGDD 72 (124)
T ss_pred EEEEECCC-------cchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCE--EEEEeCCc
Confidence 67777531 1234678999888876556677889987653222233333344455555444442 34556778
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEccCcch
Q 005728 410 MSEGFRGIVQTMGLGNLKPNIVVMRYPEI 438 (680)
Q Consensus 410 ~~~g~~~liq~~GlG~l~PNtv~lg~~~~ 438 (680)
..+++....+. .+.+.++||....
T Consensus 73 ~~~~I~~~~~~-----~~~dllviG~~~~ 96 (124)
T cd01987 73 VAEAIVEFARE-----HNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHH-----cCCCEEEeCCCCC
Confidence 99999999986 6789999998753
No 57
>PRK09664 tryptophan permease TnaB; Provisional
Probab=92.29 E-value=15 Score=40.60 Aligned_cols=60 Identities=5% Similarity=-0.021 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccc
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAAT 122 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~ 122 (680)
..+.++.++++||.=-..+..+..-.++-.|.+.|+++.+..+..++|++ ....+|..++
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~ 254 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPR 254 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 46778888888887666777777777766688999999999999999995 4555565653
No 58
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=91.92 E-value=3.8 Score=36.68 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=60.5
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccc-------hHHHHHHHHHHHHHhhhccccceE
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHEC-------AEDAKTACKQLATYIDYKRCEGVA 402 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~f~ 402 (680)
+||+++.. +....++++|..+.+...+-+.+.|+++...... .++.++..+...+..++..++.=.
T Consensus 2 ILv~vd~s-------~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 74 (132)
T cd01988 2 ILVPVANP-------NTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHT 74 (132)
T ss_pred EEEecCCc-------hhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEE
Confidence 67777521 2355788999999976667778889987542211 111122233344444445554322
Q ss_pred EEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcch
Q 005728 403 EIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEI 438 (680)
Q Consensus 403 ~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~ 438 (680)
.+..+.+..+.+....+. .+.+.|+||....
T Consensus 75 ~~~~~~~~~~~I~~~a~~-----~~~dlIV~G~~~~ 105 (132)
T cd01988 75 IIRIDHDIASGILRTAKE-----RQADLIIMGWHGS 105 (132)
T ss_pred EEEecCCHHHHHHHHHHh-----cCCCEEEEecCCC
Confidence 333467888888888875 6789999999764
No 59
>PRK11375 allantoin permease; Provisional
Probab=91.09 E-value=30 Score=39.22 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhhh-hhhhhhcccccccccccChhHHHHHHHHHHHHHHH-HHHH-HHhcccchhhHhHhHHH-Hhh-c
Q 005728 62 WSFNALVGLFFPAVT-GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYV-ISVL-LFGAAATREELLTDRLL-TAT-I 136 (680)
Q Consensus 62 ~~f~~~~~i~f~af~-G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yi-l~~~-~~g~~~~~~~~~~~~~~-~~~-~ 136 (680)
..|..++...+=++. +.-..+..+--.|+|+ +.-++...++.+...+.. +.++ ..+..........|+.. ... .
T Consensus 227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~ 305 (484)
T PRK11375 227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD 305 (484)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhcccCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc
Confidence 445554433332333 5456667777778764 344455555555444332 2222 11111100001112211 111 1
Q ss_pred cchhHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhh
Q 005728 137 AWPFPAVIHIGIILSTLGAAL-QSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG 208 (680)
Q Consensus 137 ~~~~~~ii~ig~~~s~lss~~-~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~ 208 (680)
..+...+..+..+++++++-. +.+++++=-+ .+++|+.. + -.++.++.++++.++...+
T Consensus 306 ~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l-----~~l~pk~i----~----~~~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 306 SLFASFFAVLVILMTTISTNATGNIIPAGYQI-----AALAPTKL----T----YKNGVLIASIISLLICPWK 365 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-----HHhCcCcc----c----hhhHHHHHHHHHHHhccHH
Confidence 112223344556667777644 5677766444 45567532 1 2246666666665554333
No 60
>PLN00149 potassium transporter; Provisional
Probab=90.72 E-value=5.7 Score=46.86 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhhhhhhcccccccccccChhHHHHH-HHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHH
Q 005728 66 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 66 ~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~-ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii 144 (680)
.+++-++-++||-|+.-.=-|-. .+|+|-+|-.. ..-...+-|+.....+...+.......+++....-.|.. |-+
T Consensus 272 ~~LGgV~L~iTG~EALyADlGHF--~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~-~P~ 348 (779)
T PLN00149 272 MSLGGILLCITGSEAMFADLGHF--SQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLR-WPV 348 (779)
T ss_pred EeecchhhcccchhhhhhcccCC--CccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhH-HHH
Confidence 45667788889999864422222 45677766553 333444456654443333332111233455544433332 333
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccc
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~ 181 (680)
.+.+.+|++-+.-+.+.++=-+....-+-|.+|+..-
T Consensus 349 ~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkI 385 (779)
T PLN00149 349 LVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKI 385 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 3333333333334444444445555557799998653
No 61
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=89.58 E-value=13 Score=41.05 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhccccccccccc-ChhHHHHHHHHHHHHHHHHH
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQR-SIPIGTLAATLTTTALYVIS 113 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r-~IP~a~~~ai~i~~v~Yil~ 113 (680)
.+++.++.++++||+.-..+..+-.|+|||++ ++-+....++..+.++|.+.
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~ 246 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLT 246 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999986 78888888888889999853
No 62
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=89.55 E-value=7.8 Score=45.32 Aligned_cols=110 Identities=12% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhhhhhhcccccccccccChhHHHH-HHHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHH
Q 005728 66 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTL-AATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 66 ~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~-~ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii 144 (680)
.+++-++-+.||-|+.-.=-|-. .+|+|-.|-. ...-...+-|+.....+...+ + ...+++....-.|. .+.+
T Consensus 242 ~~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p--~-~~~NpFf~~~P~~~-~~p~ 315 (688)
T TIGR00794 242 VSLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP--E-AIKNPFFLSIPDWA-LWPL 315 (688)
T ss_pred eeccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhcCc--c-hhcCcHHHhCchHH-HHHH
Confidence 46677888899999864422222 4566766665 333344445664333222222 1 23456555443333 2223
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccc
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~ 181 (680)
.+.+.+|++-+.-+.+.++=-+....-+-|.+|+..-
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I 352 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKI 352 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 3333333333334444454455555667899998643
No 63
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=88.92 E-value=5.3 Score=44.25 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChh---HHHHHHHHHHHHHHH-HHHH
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIP---IGTLAATLTTTALYV-ISVL 115 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP---~a~~~ai~i~~v~Yi-l~~~ 115 (680)
..++...++.+.|||.|+-.+--+=+++|+|++ .| ...-.++.+++++|+ ++.+
T Consensus 240 ~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~ 297 (449)
T KOG1304|consen 240 WSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFF 297 (449)
T ss_pred hhhhHHHHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999975 44 778889999999998 4444
No 64
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=88.69 E-value=10 Score=42.16 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=32.9
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 005728 131 LLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 170 (680)
Q Consensus 131 ~~~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~am 170 (680)
.....+|..+..++.+.++++|+.++.+-+.+++..+..+
T Consensus 266 i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~ 305 (427)
T PF05525_consen 266 IANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL 305 (427)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677766788899999999999999999999977664
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=87.65 E-value=49 Score=36.51 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHh-hhhhhhhhcccccccccccChhHHHHHHHHHHHH-HHHHHH
Q 005728 63 SFNALVGLFFPA-VTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTA-LYVISV 114 (680)
Q Consensus 63 ~f~~~~~i~f~a-f~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v-~Yil~~ 114 (680)
+|..++..++=. .++.-..+..+-..|+|++. -.+...+..+..+ ++++.+
T Consensus 184 ~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~-~~~~~lg~~i~~~~~~~~G~ 236 (404)
T PRK11017 184 DFSAALTLVVGSFISGGTLTADFVRFGRSAKIA-VLATMVAFFLGNSLMFIFGA 236 (404)
T ss_pred cHHHHHHHHHHHHHHhHhcCCChHhhccCccce-eehhHHHHHHHHHHHHHHHH
Confidence 455555443322 34555677778888876543 3555555544333 344433
No 66
>PLN00150 potassium ion transporter family protein; Provisional
Probab=87.05 E-value=8 Score=45.63 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhhhhhhcccccccccccChhHHHH-HHHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHH
Q 005728 66 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTL-AATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 66 ~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~-~ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii 144 (680)
.+++-++-++||-|+.-.=-|-. .+|+|-+|-. ...-...+-|+.....+...+ ....+++....-.|. .|-+
T Consensus 288 ~~LG~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p---~~~~npFf~~iP~~~-~~P~ 361 (779)
T PLN00150 288 ESLGGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM---EDVNDPFYRSLPKPI-YWPI 361 (779)
T ss_pred EEecceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc---ccccCcHHHhCCchh-HHHH
Confidence 35566777889988754422222 4566766655 333333444554333322222 123445554443333 2333
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccc
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~ 181 (680)
.+.+.+|++-+.-+.+.++=-+....-+-|.+|+..-
T Consensus 362 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI 398 (779)
T PLN00150 362 FVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKI 398 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 3333334443344444444445555557899998653
No 67
>PLN00151 potassium transporter; Provisional
Probab=86.86 E-value=10 Score=44.92 Aligned_cols=110 Identities=14% Similarity=0.031 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhhhhhhcccccccccccChhHHHHH-HHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHH
Q 005728 66 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 66 ~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~-ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii 144 (680)
.+++-++-++||-|+.-.=-|-. .+++|-.|-.. ..-...+-|+.....+...+ + ...+++....-.+.. |-+
T Consensus 348 ~~LGgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p--~-~~~npFy~svP~~~~-wP~ 421 (852)
T PLN00151 348 SALGGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP--D-SAEQIFFSSVPSSLF-WPV 421 (852)
T ss_pred EEecceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc--c-cccCcHHHhCCchhH-HHH
Confidence 34566777888888754322222 45666666543 23333444554333322222 1 134455544433332 223
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccc
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~ 181 (680)
.+.+.+|++-+.-+.+.++=-+....-+-|.+|+..-
T Consensus 422 ~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkI 458 (852)
T PLN00151 422 FLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKI 458 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 3333333333333344444444445556799998753
No 68
>PLN00148 potassium transporter; Provisional
Probab=85.87 E-value=13 Score=43.87 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhhhhhhhcccccccccccChhHHHHHH-HHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHH
Q 005728 66 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAA-TLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 66 ~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~a-i~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii 144 (680)
.+++-++-++||-|+.-.=-|-. .+|+|-+|-..- .-...+-|+.....+..-+ + ...+++....-.|. .|-+
T Consensus 271 ~~LGgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p--~-~~~npFf~~iP~~~-~~P~ 344 (785)
T PLN00148 271 ISLGGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQAAFLSKNI--P-SIPNSFYDSIPDPV-FWPV 344 (785)
T ss_pred EeecchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcchHHHHhcCc--c-cccCcHHHhCCchh-HHHH
Confidence 45667778889999864422222 456666665432 3333444664333332222 1 23455554443333 2333
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccc
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~ 181 (680)
.+.+.+|++-+.-+.+.++=-+....-+-|.+|+..-
T Consensus 345 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI 381 (785)
T PLN00148 345 FVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKV 381 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 3333334433334444444445555557799998653
No 69
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=85.83 E-value=11 Score=33.07 Aligned_cols=95 Identities=9% Similarity=0.060 Sum_probs=55.9
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccc----hHHHHHHHHHHHHHhh---hccccceE
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHEC----AEDAKTACKQLATYID---YKRCEGVA 402 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~f~ 402 (680)
+||.++.. +....++++|..+.+...+-+.++||..+..... .....+.++.++.+.. ..+++.-.
T Consensus 2 ilv~i~~~-------~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 74 (130)
T cd00293 2 ILVAVDGS-------EESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVET 74 (130)
T ss_pred EEEEeCCC-------HHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 67777531 2345788999998876556677788876542211 1111222233333333 34454444
Q ss_pred EEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 403 EIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 403 ~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
.+... +..+++...++. -+++.+++|...
T Consensus 75 ~~~~~-~~~~~i~~~~~~-----~~~dlvvig~~~ 103 (130)
T cd00293 75 VVLEG-DPAEAILEAAEE-----LGADLIVMGSRG 103 (130)
T ss_pred EEecC-CCHHHHHHHHHH-----cCCCEEEEcCCC
Confidence 44444 447788888886 679999999864
No 70
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=84.61 E-value=73 Score=35.58 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhhhhhh-hhhcccccccccc--cChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHhHHHHhhccc
Q 005728 62 WSFNALVGLFFPAVTGIM-AGSNRSASLKDTQ--RSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAW 138 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e-~~a~~s~E~knP~--r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~ 138 (680)
.+|.++++.++-.+.+|- .++..+-=.|.|+ +.+=-+.....+-..+.+++.++...+...++ ...+ .....|.
T Consensus 193 ~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~-~~~~--~~~~~G~ 269 (442)
T COG1457 193 LSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD-SIAD--VMLGLGG 269 (442)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHH--HHHhccc
Confidence 367777776665554443 2444444455554 33333333333334444555555555555444 1111 1122221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005728 139 PFPAVIHIGIILSTLGAALQSLTGAPRLLAA 169 (680)
Q Consensus 139 ~~~~ii~ig~~~s~lss~~~~l~~~sR~l~a 169 (680)
+.....+.+.+++.++---.+++++=-+..
T Consensus 270 -~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 270 -FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred -HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 234555566666666555556666544433
No 71
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=81.10 E-value=44 Score=35.62 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=48.6
Q ss_pred hhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHh-HH--HHhhccchhHHHHHHHHHHHHH
Q 005728 77 GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-RL--LTATIAWPFPAVIHIGIILSTL 153 (680)
Q Consensus 77 G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~ii~ig~~~s~l 153 (680)
+.-....+++|+++++...--|...+++.+.++.+....+.+..+ +....| |. .....++....++.+.+++...
T Consensus 194 ~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~Iy 271 (349)
T COG3949 194 AVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVNYDIPLLTIAKNFSPLIGLVMSVIIWLEIY 271 (349)
T ss_pred HhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhccCCcHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 334456678999997666655566666666666554444433332 111111 22 2233444434566666777777
Q ss_pred HHHHHHHhhHHH
Q 005728 154 GAALQSLTGAPR 165 (680)
Q Consensus 154 ss~~~~l~~~sR 165 (680)
++..+.+++-++
T Consensus 272 tT~vg~iy~l~~ 283 (349)
T COG3949 272 TTTVGLIYGLAS 283 (349)
T ss_pred HHHHHHHHHHHH
Confidence 788777777443
No 72
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=80.89 E-value=20 Score=41.39 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHH-HHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHH
Q 005728 66 ALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATL-TTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVI 144 (680)
Q Consensus 66 ~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~-i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii 144 (680)
.+++-++-+.||-|+--.=-|-. .+|+|-+|-..-+. ...+-|+.....+..-+ + ...+++....-.|. .+.+
T Consensus 216 ~~LG~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p--~-~~~NpFf~~~P~~~-~~p~ 289 (622)
T PRK10745 216 FALGAVVLAITGVEALYADMGHF--GKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP--E-AIKNPFFLLAPDWA-LIPL 289 (622)
T ss_pred EEecceeeeccchHHHhhccCCC--CccceeeeehhhHHHHHHHHhcchHHHHhcCc--h-hhcCcHHHhCChhH-HHHH
Confidence 35667788889999864422222 45677776654443 44555664333222222 1 23455554433332 2223
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccc
Q 005728 145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181 (680)
Q Consensus 145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~ 181 (680)
.+.+.++++-+.-+.+.++=-+....-+-|.+|+..-
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I 326 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRI 326 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceE
Confidence 3333333333334444455455555667899998643
No 73
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=80.02 E-value=34 Score=30.07 Aligned_cols=97 Identities=8% Similarity=0.054 Sum_probs=62.6
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHH-HHHHHH-----------HHhhhc
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKT-ACKQLA-----------TYIDYK 396 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~ 396 (680)
.+||.++.. +....++++|-.+.+...+-+.++||++............ ...... ......
T Consensus 4 ~Ilv~~d~~-------~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (140)
T PF00582_consen 4 RILVAIDGS-------EESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAE 76 (140)
T ss_dssp EEEEEESSS-------HHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCC-------HHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhh
Confidence 477777531 2344788888888876556678889987653322211110 000111 112234
Q ss_pred cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 397 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 397 ~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
........+...+..+++....+. .+++.|+||...
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~dliv~G~~~ 112 (140)
T PF00582_consen 77 GGIVIEVVIESGDVADAIIEFAEE-----HNADLIVMGSRG 112 (140)
T ss_dssp TTSEEEEEEEESSHHHHHHHHHHH-----TTCSEEEEESSS
T ss_pred ccceeEEEEEeeccchhhhhcccc-----ccceeEEEeccC
Confidence 566778888899999999999987 789999999986
No 74
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=78.58 E-value=1.1e+02 Score=34.14 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=31.1
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 005728 132 LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 170 (680)
Q Consensus 132 ~~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~am 170 (680)
.....|..+..++.+.++++|++++.+.+.+.++.+...
T Consensus 271 ~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 271 VQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666788899999999999999999999876543
No 75
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=78.53 E-value=45 Score=35.38 Aligned_cols=107 Identities=14% Similarity=0.009 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhHh-HhHHH----Hhh
Q 005728 62 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREELL-TDRLL----TAT 135 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~~-~~~~~----~~~ 135 (680)
..++.+.....+.|.|++....+..-+|+|+ ...|+...++++++++|.+ ....++..++..... .-|.. ...
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~ 253 (320)
T PF03845_consen 175 KPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIE 253 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhH
Confidence 3566667777888999999999999999975 5689999999999999984 445555555332210 00111 011
Q ss_pred cc---chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005728 136 IA---WPFPAVIHIGIILSTLGAALQSLTGAPRLLAA 169 (680)
Q Consensus 136 ~~---~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~a 169 (680)
.+ -..-.++...-+.+.+......++++++.+..
T Consensus 254 i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 254 IGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00122333333445555566667777766544
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=75.95 E-value=1.4e+02 Score=33.44 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=18.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAP 164 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~s 164 (680)
..|....+++.+|.+.+.+++......++.
T Consensus 303 ~~G~~a~~lFaiGL~aag~sS~i~~~~a~~ 332 (439)
T PRK00701 303 LLGAAAATLFGIALLASGLSSTVVGTLAGQ 332 (439)
T ss_pred HHhHHHHHHHHHHHHHhHhHHHhHHHHHHH
Confidence 334334677788888887777665544443
No 77
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=74.15 E-value=1.6e+02 Score=33.18 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=42.9
Q ss_pred cccccccccccChhHHHHHHHHHHHHHHHHH-HH-HHhcccchhhHhHh---H-HHHhhccchhHHHHHHHHHHHHHHHH
Q 005728 83 NRSASLKDTQRSIPIGTLAATLTTTALYVIS-VL-LFGAAATREELLTD---R-LLTATIAWPFPAVIHIGIILSTLGAA 156 (680)
Q Consensus 83 ~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~-~~-~~g~~~~~~~~~~~---~-~~~~~~~~~~~~ii~ig~~~s~lss~ 156 (680)
+..--.||+ |+..|+..++.+...++++.. .. +.+....++....| + +.....+.....++.++++.+.+|++
T Consensus 257 ~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~ 335 (471)
T TIGR02119 257 VRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTV 335 (471)
T ss_pred HHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 344455664 677788877766555554421 11 11111011110011 2 22333443345667777888888888
Q ss_pred HHHHhhHHHH
Q 005728 157 LQSLTGAPRL 166 (680)
Q Consensus 157 ~~~l~~~sR~ 166 (680)
.+.+.+.+=+
T Consensus 336 ~s~l~~~ss~ 345 (471)
T TIGR02119 336 NSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHH
Confidence 8877776644
No 78
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=71.53 E-value=37 Score=36.77 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=30.8
Q ss_pred Hhhcc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005728 133 TATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIA 171 (680)
Q Consensus 133 ~~~~~-~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amA 171 (680)
....| .....++.+|.+.+.+++..+...+.++.+...-
T Consensus 246 ~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 246 EPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 44556 3447889999999999999999999888776543
No 79
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=70.45 E-value=1.8e+02 Score=32.43 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhh-hhhhhhcccccccccccChhHHHHHHHHHHHHHHH
Q 005728 62 WSFNALVGLFFPAVT-GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYV 111 (680)
Q Consensus 62 ~~f~~~~~i~f~af~-G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yi 111 (680)
..+..+++..||+.+ |+-...+.|.=+++ +.|+|+......+.-+.+-+
T Consensus 214 ~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~ 263 (439)
T COG0733 214 KVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISL 263 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHH
Confidence 368899999999976 77777777776654 77888887766665555544
No 80
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=69.91 E-value=59 Score=37.04 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHH-HHHHHHHHHHHHHhcccchhhHhHhHHHHhhccchhHHHHH
Q 005728 67 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATL-TTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIH 145 (680)
Q Consensus 67 ~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~-i~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~ 145 (680)
+++.+|-+.||-|+.-.=-|-. -+|.|-+|-..-+. ...+=|+..-..+-.. + ....+++....-.|..-+.+.
T Consensus 222 vLGaVfLavTGaEALYADmGHf--Gr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~--p-~a~~npFF~~~P~~aliP~vi 296 (627)
T COG3158 222 VLGAVFLAVTGAEALYADMGHF--GRKPIRVAWFFVVLPCLLLNYFGQGALLLSN--P-EAIGNPFFLLAPDWALIPLVI 296 (627)
T ss_pred EeeeeeeeeccHHHHHhhcccc--CCccHHHHHHHHHHHHHHHHHccccceeccC--c-ccccCcHHHhChhhHHHHHHH
Confidence 3556777889988865433333 35666666554444 3333344211111111 1 112334444444443222222
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccC---CC--CchHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 005728 146 IGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE---GR--EPHIATFFTAFICIGCVIIGNLDLITPTITMF 220 (680)
Q Consensus 146 ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k---~~--~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~ 220 (680)
+. .+++.-+.-+.+.++=-+....-+-|++|+..-...+. .+ .|..-.++...+..+...+++-+.++...++.
T Consensus 297 LA-T~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiA 375 (627)
T COG3158 297 LA-TAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIA 375 (627)
T ss_pred HH-HHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChh
Confidence 22 22222222233333333333444789999864322221 22 35333333222222223345556666644443
No 81
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=69.25 E-value=2e+02 Score=32.27 Aligned_cols=111 Identities=9% Similarity=-0.042 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccc----c------cccccChhHHHHHHHHHHHHHHHH-HHHHHhcccchhhH--h-H
Q 005728 63 SFNALVGLFFPAVTGIMAGSNRSAS----L------KDTQRSIPIGTLAATLTTTALYVI-SVLLFGAAATREEL--L-T 128 (680)
Q Consensus 63 ~f~~~~~i~f~af~G~e~~a~~s~E----~------knP~r~IP~a~~~ai~i~~v~Yil-~~~~~g~~~~~~~~--~-~ 128 (680)
..+.++.++++||.=.-.++.++-. . ++..|..-|++..+.++..++|++ ...+++..++.+.. . +
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4677788888887655555555444 3 234578889999999999999995 45556666544321 1 1
Q ss_pred h-H----HHHhhcc---c-----h-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Q 005728 129 D-R----LLTATIA---W-----P-FPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 173 (680)
Q Consensus 129 ~-~----~~~~~~~---~-----~-~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArD 173 (680)
+ + ++....+ . + ...+..+...+|..+|.++...+.--.+..+.+.
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2221111 0 1 2344445556677777788888877777777743
No 82
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=65.98 E-value=83 Score=28.58 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=49.1
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCc-cc-------hHH-HH----HHHHHHHHHh---
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH-EC-------AED-AK----TACKQLATYI--- 393 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~-~~-------~~~-~~----~~~~~~~~~~--- 393 (680)
+||.++. .+ .....+++|..+.+...+-+.++||++.... .. .++ .+ +..+.+++..
T Consensus 2 ILVavD~------S~-~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 74 (146)
T cd01989 2 VAVAVDK------DK-KSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFC 74 (146)
T ss_pred EEEEecC------cc-ccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677643 11 2335679998887644456677888754211 00 000 01 1111222222
Q ss_pred hhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCc
Q 005728 394 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYP 436 (680)
Q Consensus 394 ~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~ 436 (680)
+...++.-..++...+..+.+-...+. .+.+.|+||=.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~I~~~a~~-----~~~dlIV~Gs~ 112 (146)
T cd01989 75 SRKGVQCEDVVLEDDDVAKAIVEYVAD-----HGITKLVMGAS 112 (146)
T ss_pred hhcCCeEEEEEEeCCcHHHHHHHHHHH-----cCCCEEEEecc
Confidence 223333333333445777777777665 67889999854
No 83
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=62.18 E-value=2.7e+02 Score=31.38 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=23.5
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 173 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArD 173 (680)
..+.....++.++++.+..|++.+.+.+.+=+ +++|
T Consensus 315 ~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~---~~~D 350 (483)
T PRK09442 315 VLPPFAAGIFLAAPMAAIMSTVDSQLLQSSST---IIKD 350 (483)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34434456777788888888887777666543 4455
No 84
>PRK10484 putative transporter; Provisional
Probab=58.97 E-value=3.2e+02 Score=31.20 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=22.5
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRL 166 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~ 166 (680)
..+.....++.++++.+..|++.+.+.+.+=+
T Consensus 323 ~lp~~l~Gl~~a~ilAA~mST~~s~l~s~st~ 354 (523)
T PRK10484 323 VLPVPLVGFFAAVLFGAILSTFNGFLNSASTL 354 (523)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456778888888888888888777654
No 85
>PRK15005 universal stress protein F; Provisional
Probab=56.88 E-value=1.5e+02 Score=26.72 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=53.8
Q ss_pred ceEEeeCCCCCCCCCCCC-chhHhhhHHHhhhCCCeeEEEEEEEeCC-Cc--------cc---hHH-HHHHHHHHHHHhh
Q 005728 329 IPLIFCRPWGKLPENVPC-HPKLADFANCMKKKGRGMSIFVSILDGD-YH--------EC---AED-AKTACKQLATYID 394 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~-~~~L~~fa~~l~k~~~g~~~~~~v~~~~-~~--------~~---~~~-~~~~~~~~~~~~~ 394 (680)
.+|+.++.. +.. ....+++|..+.+...+-+.++||++.. .. .. .++ .++..+.+++..+
T Consensus 4 ~ILv~~D~s------~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (144)
T PRK15005 4 TILVPIDIS------DSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIK 77 (144)
T ss_pred cEEEecCCC------chhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 478887531 111 2367789988887555667778888531 10 00 011 1122334555555
Q ss_pred hccccc--eEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccC
Q 005728 395 YKRCEG--VAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRY 435 (680)
Q Consensus 395 ~~~~~~--f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~ 435 (680)
..+..+ +...+...+..+.+....+. ..++.|+||=
T Consensus 78 ~~~~~~~~~~~~v~~G~p~~~I~~~a~~-----~~~DLIV~Gs 115 (144)
T PRK15005 78 KFKLPTDRVHVHVEEGSPKDRILELAKK-----IPADMIIIAS 115 (144)
T ss_pred HhCCCCCceEEEEeCCCHHHHHHHHHHH-----cCCCEEEEeC
Confidence 444333 22334455777777777765 6888999983
No 86
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=54.37 E-value=39 Score=28.46 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=34.9
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHH--HH----------HHHHHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHH
Q 005728 242 SWRPRWKFHHWSLSLLGSVFCIVIMFLI--SW----------SFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQ 307 (680)
Q Consensus 242 ~~rp~fk~~~~~~~llg~v~~~~~~~~i--~~----------~~~~i~~~i~~~iy~~~~~~~~~~~wg~~~~~~~~~ 307 (680)
+|+-+||-+.+|++++++++.++-.+.. +| +...+..+++++..+-..--.-.+..+|+.|++.|+
T Consensus 3 NwKvR~kN~~~w~ali~~i~l~vq~~~~~fg~~~~~~~~~~~i~~~v~~vl~iL~~~Gii~DPTT~G~sDS~~al~y~ 80 (84)
T PF04531_consen 3 NWKVRFKNKAFWVALISAILLLVQQVGGLFGWGADFDVLLDQISNIVNAVLTILVILGIINDPTTKGISDSEQALTYK 80 (84)
T ss_pred chhhcccCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHheeeeCCCCCCCCcHHHHHhcc
Confidence 4666677777788888887776544432 22 111222222222222122223356678888887664
No 87
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=49.69 E-value=4e+02 Score=29.51 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=28.0
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005728 133 TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLA 168 (680)
Q Consensus 133 ~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~ 168 (680)
+..+|..+..+..+.+.++|+.++.+.+.+++-.+.
T Consensus 270 ~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 270 QHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445565556788888999999999999999887653
No 88
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=47.97 E-value=4.3e+02 Score=30.28 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=13.9
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHhhc
Q 005728 212 LITPTITMFFLLCYSGVNLSCFLLDLL 238 (680)
Q Consensus 212 ~i~~l~s~~~l~~y~li~~a~~~lr~~ 238 (680)
.+..+..+.++++.-++.++.+.-+++
T Consensus 368 t~~~l~~lw~~v~~PL~~lG~~~g~k~ 394 (521)
T PF02990_consen 368 TILFLIALWFFVSIPLTFLGGYFGFKN 394 (521)
T ss_pred HHHHHHHHHHHHhhhhhhcchhhhcCc
Confidence 344444444555555555666655443
No 89
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=47.21 E-value=29 Score=35.88 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=18.9
Q ss_pred CCCCcccc--hhhHHHHHHHHHHHHHHHH
Q 005728 243 WRPRWKFH--HWSLSLLGSVFCIVIMFLI 269 (680)
Q Consensus 243 ~rp~fk~~--~~~~~llg~v~~~~~~~~i 269 (680)
||+.|++- -|.+|++.++.|+++..++
T Consensus 280 Wr~~f~LAnRIPlIPV~TaL~CLFlaAFl 308 (347)
T PF10951_consen 280 WRREFKLANRIPLIPVLTALACLFLAAFL 308 (347)
T ss_pred HHhhcchhccCCchHHHHHHHHHHHHHHH
Confidence 56666654 4678888888988766553
No 90
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=47.02 E-value=2.2e+02 Score=25.75 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=64.8
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCC-Cc------cchHH-HHHHH----HHHHHHhhhc
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD-YH------ECAED-AKTAC----KQLATYIDYK 396 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~-~~------~~~~~-~~~~~----~~~~~~~~~~ 396 (680)
+||+.++.. + .....++.|..+.+...+-+.+.||.... .. ...++ .++.. +.++++.+..
T Consensus 5 ~ILvavD~S------~-~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (144)
T PRK15118 5 HILIAVDLS------P-ESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA 77 (144)
T ss_pred EEEEEccCC------h-hHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC
Confidence 478887531 1 23356688888876434456677874321 00 00011 11111 2233333333
Q ss_pred cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHH-hccceEEEEcC
Q 005728 397 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG 470 (680)
Q Consensus 397 ~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~-~~~~~v~i~r~ 470 (680)
.+......+...+..+.+....+. .+++.|+||=.... ...+.++-+... ..++.|++.|.
T Consensus 78 ~~~~~~~~~~~G~p~~~I~~~a~~-----~~~DLIV~Gs~~~~--------~~~lgSva~~v~~~a~~pVLvv~~ 139 (144)
T PRK15118 78 GYPITETLSGSGDLGQVLVDAIKK-----YDMDLVVCGHHQDF--------WSKLMSSARQLINTVHVDMLIVPL 139 (144)
T ss_pred CCCceEEEEEecCHHHHHHHHHHH-----hCCCEEEEeCcccH--------HHHHHHHHHHHHhhCCCCEEEecC
Confidence 344323344456888888888876 78899999864321 112333444433 45788888874
No 91
>PRK11175 universal stress protein UspE; Provisional
Probab=45.20 E-value=1.4e+02 Score=31.14 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=61.5
Q ss_pred hHhhhHHHhhhCC-CeeEEEEEEEeCCCcc--------chHH----HH-HHHHHHHHHhhhccccceEEEEecCCHHHHH
Q 005728 349 KLADFANCMKKKG-RGMSIFVSILDGDYHE--------CAED----AK-TACKQLATYIDYKRCEGVAEIVVAPNMSEGF 414 (680)
Q Consensus 349 ~L~~fa~~l~k~~-~g~~~~~~v~~~~~~~--------~~~~----~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~ 414 (680)
..+++|..+.+.. .+-+.++||....... ..++ .+ +..+.++++.+..++......+...+..+.+
T Consensus 174 ~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I 253 (305)
T PRK11175 174 KLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVI 253 (305)
T ss_pred HHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHH
Confidence 4678888887654 4556778887532110 0011 11 1223455565555554433334456788888
Q ss_pred HHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHHH-hccceEEEEc
Q 005728 415 RGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDCI-VANKAVVIVK 469 (680)
Q Consensus 415 ~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~~-~~~~~v~i~r 469 (680)
....+. .+++.|+||-..... ..+-+. ++.+... ..++.|++.|
T Consensus 254 ~~~a~~-----~~~DLIVmG~~~~~~------~~~~llGS~a~~v~~~~~~pVLvv~ 299 (305)
T PRK11175 254 PDLAEH-----LDAELVILGTVGRTG------LSAAFLGNTAEHVIDHLNCDLLAIK 299 (305)
T ss_pred HHHHHH-----hCCCEEEECCCccCC------CcceeecchHHHHHhcCCCCEEEEc
Confidence 888886 689999999864311 111111 1222222 4678899887
No 92
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=44.40 E-value=2.8e+02 Score=30.37 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=24.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005728 134 ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRL 166 (680)
Q Consensus 134 ~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~ 166 (680)
...+.+...++.++++.+.+|++.+.+.+.+=.
T Consensus 289 ~~lp~~l~gl~~agilaA~mST~~s~l~a~ss~ 321 (407)
T TIGR00813 289 ELMPPGLAGLFLAAILAAVMSTLSSQLNSASTV 321 (407)
T ss_pred HHcCcchHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344544567888888899999888887777654
No 93
>PRK09982 universal stress protein UspD; Provisional
Probab=43.94 E-value=2.5e+02 Score=25.51 Aligned_cols=122 Identities=14% Similarity=0.030 Sum_probs=64.8
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCc-------cchHHH-HHH----HHHHHHHhhhc
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH-------ECAEDA-KTA----CKQLATYIDYK 396 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~-------~~~~~~-~~~----~~~~~~~~~~~ 396 (680)
.|||.++.. . .....++.|..+.+...+-+.++||++.... ...++. +.. .+.+++..+..
T Consensus 5 ~ILvavD~S------~-~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK09982 5 HIGVAISGN------E-EDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI 77 (142)
T ss_pred EEEEEecCC------c-chHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 378887531 1 2345678888888755566788898754210 010111 111 11233332222
Q ss_pred cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHH-hccceEEEEcC
Q 005728 397 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG 470 (680)
Q Consensus 397 ~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~-~~~~~v~i~r~ 470 (680)
+.......+..-+..+.+....+. .+.+.++||= . +.. . ..++.+-+.+. ..+.-|++.|-
T Consensus 78 ~~~~~~~~v~~G~p~~~I~~~A~~-----~~aDLIVmG~--~-~~~----~-~~~~~va~~V~~~s~~pVLvv~~ 139 (142)
T PRK09982 78 QWPKTKLRIERGEMPETLLEIMQK-----EQCDLLVCGH--H-HSF----I-NRLMPAYRGMINKMSADLLIVPF 139 (142)
T ss_pred CCCcceEEEEecCHHHHHHHHHHH-----cCCCEEEEeC--C-hhH----H-HHHHHHHHHHHhcCCCCEEEecC
Confidence 222232334456888888888876 6789999993 2 211 1 22333333333 35677888763
No 94
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=42.18 E-value=2.3e+02 Score=31.41 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=56.8
Q ss_pred hhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccc---chhhH----hHhHHHHhhccchhHHHHHHHH
Q 005728 76 TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA---TREEL----LTDRLLTATIAWPFPAVIHIGI 148 (680)
Q Consensus 76 ~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~---~~~~~----~~~~~~~~~~~~~~~~ii~ig~ 148 (680)
.|....++.+.|+++|.|.==.+++...+-+.++-.++.+.+..+. ..+.. +.........+....+++.+.+
T Consensus 236 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l 315 (416)
T PF01235_consen 236 LGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIAL 315 (416)
T ss_pred CChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3666677777889999887666665555544443333222222221 11111 1111122233433467888999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 005728 149 ILSTLGAALQSLTGAPRLLAAIA 171 (680)
Q Consensus 149 ~~s~lss~~~~l~~~sR~l~amA 171 (680)
++-.+++.+++.+.+-+.+.-+-
T Consensus 316 ~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 316 FLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888776654
No 95
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=41.80 E-value=7.4e+02 Score=30.30 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=65.8
Q ss_pred ccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhccccc-CCCchhHHHHHHHHHh-ccceEEEE--cCC
Q 005728 396 KRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENL-TEIPATFVGIINDCIV-ANKAVVIV--KGL 471 (680)
Q Consensus 396 ~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~-~~~~~~~~~~i~~~~~-~~~~v~i~--r~~ 471 (680)
..++.|..+..-++.++++-++... .+.+.++++|.+.|+.+.. +.....|-+..+..++ +.+.|.|+ ||.
T Consensus 544 v~v~~~t~vs~~~~mh~dIc~~A~d-----~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~ 618 (832)
T PLN03159 544 VSVQPLTAISPYSTMHEDVCNLAED-----KRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGL 618 (832)
T ss_pred eEEEEEEEEeCcccHHHHHHHHHHh-----cCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCC
Confidence 3355555555555999999999986 8999999999998875432 1222344444555553 45655555 764
Q ss_pred CCCCcccc-cCCCcceeEEE-ecCChHHHHHHHHhccCCCcCCCeeEEEEeec
Q 005728 472 DEWPNEYQ-RQYGTIDLYWI-VRDGGLMLLLSQLLLTKESFESCKIQVFCIAE 522 (680)
Q Consensus 472 ~~~p~~~~-~~~g~IDvwW~-~~dGgL~Lll~~lL~~~~~W~~~klRvf~~~~ 522 (680)
........ .....|=+-.+ ..|.--.|-++.=+.+|+ +.++-|+....
T Consensus 619 ~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p---~v~lTVirf~~ 668 (832)
T PLN03159 619 SGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHP---GITLTVMRFIP 668 (832)
T ss_pred CccccccccccceeEEEEecCCcchHHHHHHHHHHhcCC---CeEEEEEEEEc
Confidence 42100000 00112222222 234445555555556665 56666665543
No 96
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=41.54 E-value=5.4e+02 Score=28.63 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhh-hhhhhhhcccccccccccChhHHHHHHHHHHHHHH
Q 005728 61 DWSFNALVGLFFPAV-TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALY 110 (680)
Q Consensus 61 ~~~f~~~~~i~f~af-~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Y 110 (680)
..+|..++.+.+=.+ ++.-.++..+--.|+|+ +-.++...+.....+..
T Consensus 206 ~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~-~~~~~~~~~~~~~~~~~ 255 (442)
T TIGR00800 206 AWAFLYALSLVIGSFATWATNAPDFTRFGKSKK-TAIWGQFLALPGGFTLT 255 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc-chHHHHHHHHHHHHHHH
Confidence 346666665544332 34445667777777654 44455555544444433
No 97
>PF14256 YwiC: YwiC-like protein
Probab=40.82 E-value=2.9e+02 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhh
Q 005728 217 ITMFFLLCYSGVNLSCFLLDL 237 (680)
Q Consensus 217 ~s~~~l~~y~li~~a~~~lr~ 237 (680)
...+.++.|....-....++.
T Consensus 30 L~~aw~~~yl~~~p~~~~~k~ 50 (129)
T PF14256_consen 30 LLLAWLFGYLAFYPFLLWLKQ 50 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555566554444444443
No 98
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=40.71 E-value=5.8e+02 Score=28.79 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=24.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 173 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArD 173 (680)
.+.....++.++++.+..|++.+.+.+.+=+ +++|
T Consensus 315 ~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~---~~~D 349 (487)
T TIGR02121 315 FHPWIAGILLAAILAAIMSTISSQLLVSSSA---LTED 349 (487)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3333456777888888888888888877654 4455
No 99
>COG4025 Predicted membrane protein [Function unknown]
Probab=40.57 E-value=2.4e+02 Score=28.47 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHhCCCCCc
Q 005728 161 TGAPRLLAAIANDDILPV 178 (680)
Q Consensus 161 ~~~sR~l~amArDg~lP~ 178 (680)
.+.-|-..+++||+.+|.
T Consensus 54 ~~~ve~v~e~~re~~i~~ 71 (284)
T COG4025 54 ASKVEKVMEKVREFQIPL 71 (284)
T ss_pred HHHHHHHHHHHhcCCCcC
Confidence 345677889999999873
No 100
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=40.50 E-value=52 Score=25.52 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHH
Q 005728 65 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYV 111 (680)
Q Consensus 65 ~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yi 111 (680)
+.++-.+++||.|.....+.-.|.++.+ |...+.+-++.+++++
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV 45 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFV 45 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHH
Confidence 4567788999999999999888876533 4444444333333333
No 101
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=39.29 E-value=5.9e+02 Score=28.43 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=54.1
Q ss_pred hhhhhhcccccccccccChhHHHHHHHHHHHHHHHHH---HHHHhccc-chh---hHhHhHHHHhhccchhHHHHHHHHH
Q 005728 77 GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVIS---VLLFGAAA-TRE---ELLTDRLLTATIAWPFPAVIHIGII 149 (680)
Q Consensus 77 G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~---~~~~g~~~-~~~---~~~~~~~~~~~~~~~~~~ii~ig~~ 149 (680)
|....++.+.++++|.|.==.+++...+=+.++-.++ +++.+.-. +.+ ..+.........+..+.+++.+.++
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5666677788889998876666555544333333222 22222211 101 1111111222234224688899999
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 005728 150 LSTLGAALQSLTGAPRLLAAI 170 (680)
Q Consensus 150 ~s~lss~~~~l~~~sR~l~am 170 (680)
+-.+++.+++.+.+-+.+.-+
T Consensus 344 lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888877655
No 102
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=36.73 E-value=7.1e+02 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=14.9
Q ss_pred ccccccChhHHHHHHHHHHHHHHH
Q 005728 88 LKDTQRSIPIGTLAATLTTTALYV 111 (680)
Q Consensus 88 ~knP~r~IP~a~~~ai~i~~v~Yi 111 (680)
.|| .|+..|++.++.....++|+
T Consensus 287 aks-~k~ar~s~~~~~~~~~~~~~ 309 (549)
T TIGR02711 287 VSD-AKEARKSVFYATGFMGYFYI 309 (549)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHH
Confidence 355 35677777777766666665
No 103
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=35.42 E-value=4.2e+02 Score=27.44 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhh--hhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchh-----hHHHHHHHHHH
Q 005728 191 HIATFFTAFICIGCVIIGNL--DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHW-----SLSLLGSVFCI 263 (680)
Q Consensus 191 ~~Aill~~~i~~i~~l~~~~--~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~-----~~~llg~v~~~ 263 (680)
..+++.+.+++...++.|-+ +..+.+-.+..++.-.+..+++.+-|.-...+...+|.+..| .+.+=|.++.+
T Consensus 23 ~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~ll~l 102 (314)
T COG3965 23 RISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTLLAL 102 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhccHHHHH
Q ss_pred HHHHHH------------------HHHHHHHHHHHHHHHHHHHhh--cCCCCC
Q 005728 264 VIMFLI------------------SWSFTVVSLALASLIYYYVCL--KGKAGD 296 (680)
Q Consensus 264 ~~~~~i------------------~~~~~~i~~~i~~~iy~~~~~--~~~~~~ 296 (680)
...+.. ...+.++....+..+|+..++ |+-+++
T Consensus 103 l~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~ 155 (314)
T COG3965 103 LCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSP 155 (314)
T ss_pred HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
No 104
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.45 E-value=1.1e+03 Score=29.74 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=18.3
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHHhc
Q 005728 514 KIQVFCIAEEDSDAEVLKADVKKFLYDL 541 (680)
Q Consensus 514 klRvf~~~~~~~~~~~~~~~l~~ll~~~ 541 (680)
++.+-.-+..+++.++.++-+.+.+++-
T Consensus 992 Rv~i~VgV~Y~sDie~v~~iL~eaa~~~ 1019 (1109)
T PRK10929 992 RVVLTIPAPADANSEEVTEILLTAARRC 1019 (1109)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3334333556678999998888776653
No 105
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=31.99 E-value=7.1e+02 Score=27.19 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=41.8
Q ss_pred hhcccccccccccChhHHHHHHHHHHHHHHH-HHHHHHhcccchhhHhHhHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Q 005728 81 GSNRSASLKDTQRSIPIGTLAATLTTTALYV-ISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQS 159 (680)
Q Consensus 81 ~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yi-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~ig~~~s~lss~~~~ 159 (680)
.+..+--.|+| |+.=+++..+..+...+-. +.++........| + .+.+ ...+ ...+..+..++++.++....
T Consensus 192 ~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d-~-~~~~--~~~g--~~~~~~~~~~l~~~~~n~~N 264 (386)
T TIGR02358 192 IADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTD-I-ISIL--AGAG--LGIPALLIILLSTVTTTFMD 264 (386)
T ss_pred ccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHhcCCCC-H-HHHH--Hhcc--HHHHHHHHHHHhHHHHHHHH
Confidence 55666666765 4455566655555544444 4443333333221 1 1111 1112 12334455566777766677
Q ss_pred HhhHHHHHHHHH
Q 005728 160 LTGAPRLLAAIA 171 (680)
Q Consensus 160 l~~~sR~l~amA 171 (680)
+++++=-+.++.
T Consensus 265 ~ys~~l~l~~l~ 276 (386)
T TIGR02358 265 IYSAAISTGNLL 276 (386)
T ss_pred HHHHHHHHHHHH
Confidence 777776666653
No 106
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=2.2e+02 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEE-eCCCccchHHHHHHHHHHHHHhhhccccceE
Q 005728 324 KNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSIL-DGDYHECAEDAKTACKQLATYIDYKRCEGVA 402 (680)
Q Consensus 324 k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 402 (680)
|--|-.++++++.+-. +++..|+++|.+|+|+| ++..++ .|+..+ ..-+.++++..+-..-+
T Consensus 104 k~q~qriVaFvgSpi~-----esedeLirlak~lkknn----VAidii~fGE~~n--------~~~l~efIda~N~~dss 166 (243)
T COG5148 104 KGQRQRIVAFVGSPIQ-----ESEDELIRLAKQLKKNN----VAIDIIFFGEAAN--------MAGLFEFIDATNFSDSS 166 (243)
T ss_pred CccceEEEEEecCccc-----ccHHHHHHHHHHHHhcC----eeEEEEehhhhhh--------hhHHHHHHHhhccccce
Confidence 3344458888876432 35678999999999887 233333 454221 12344566655544434
Q ss_pred EEEec
Q 005728 403 EIVVA 407 (680)
Q Consensus 403 ~~~~~ 407 (680)
++.+-
T Consensus 167 hl~~~ 171 (243)
T COG5148 167 HLEVK 171 (243)
T ss_pred eeEec
Confidence 44443
No 107
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=31.03 E-value=7.3e+02 Score=27.83 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=54.3
Q ss_pred hhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccc---hh----hHhHhHHHHhhccchhHHHHHHHHH
Q 005728 77 GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT---RE----ELLTDRLLTATIAWPFPAVIHIGII 149 (680)
Q Consensus 77 G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~---~~----~~~~~~~~~~~~~~~~~~ii~ig~~ 149 (680)
|....++.+.++++|.|.==..++...+=+.++-..+.+.+-.... .+ ..+........++.....++.++++
T Consensus 281 Gsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~ 360 (452)
T COG1115 281 GSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALF 360 (452)
T ss_pred CcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 4455566677788888765555444443233333222222222221 11 1111112233444344789999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 005728 150 LSTLGAALQSLTGAPRLLAAIA 171 (680)
Q Consensus 150 ~s~lss~~~~l~~~sR~l~amA 171 (680)
+-.+++.+++.+.+-|.+.-+.
T Consensus 361 lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 361 LFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988876654
No 108
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=30.22 E-value=7.2e+02 Score=26.72 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=20.8
Q ss_pred hhcccccccccccC----hhHHHHHHHHHHHHHHH
Q 005728 81 GSNRSASLKDTQRS----IPIGTLAATLTTTALYV 111 (680)
Q Consensus 81 ~a~~s~E~knP~r~----IP~a~~~ai~i~~v~Yi 111 (680)
....++++.+++++ -|+|+..+++.+.-.-+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl 62 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPL 62 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHH
Confidence 45566777777766 78887777776655544
No 109
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.01 E-value=17 Score=37.33 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=0.0
Q ss_pred cCCCCchHHHHHHHH
Q 005728 185 AEGREPHIATFFTAF 199 (680)
Q Consensus 185 ~k~~~P~~Aill~~~ 199 (680)
+|.-.|...+++..+
T Consensus 16 pr~p~~~a~l~~~~l 30 (381)
T PF05297_consen 16 PRCPQPHASLLFGLL 30 (381)
T ss_dssp ---------------
T ss_pred CCCCCcchhHHHHHH
Confidence 344455555555443
No 110
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.24 E-value=18 Score=37.19 Aligned_cols=11 Identities=55% Similarity=0.736 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh
Q 005728 279 ALASLIYYYVC 289 (680)
Q Consensus 279 ~i~~~iy~~~~ 289 (680)
.+++++|.|++
T Consensus 176 FlaiLIWlY~H 186 (381)
T PF05297_consen 176 FLAILIWLYVH 186 (381)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 44566666654
No 111
>PRK11371 hypothetical protein; Provisional
Probab=29.02 E-value=92 Score=26.99 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=20.4
Q ss_pred hhhhhHHhHHHHHHHHHHHhHHHHHHHHhh
Q 005728 208 GNLDLITPTITMFFLLCYSGVNLSCFLLDL 237 (680)
Q Consensus 208 ~~~~~i~~l~s~~~l~~y~li~~a~~~lr~ 237 (680)
.+.....-......++-|+++|.-|=++|-
T Consensus 37 ~~~~~~~l~i~~tillhylvinmncqr~rd 66 (126)
T PRK11371 37 NDGEAGFLVIVSTILLHYLVINMNCQRLRD 66 (126)
T ss_pred hcCCceehhHHHHHHHHHHheecchHhhhh
Confidence 333444445556678899999999987764
No 112
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=28.43 E-value=6.9e+02 Score=28.92 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=26.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 005728 186 EGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSG 227 (680)
Q Consensus 186 k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~~l~~y~l 227 (680)
..++|..+++-..++.+++.++..+-.-.+.++...++.++.
T Consensus 318 GarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~ 359 (554)
T COG0659 318 GARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVG 359 (554)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 357898888877777776666666655555555444444433
No 113
>PRK11175 universal stress protein UspE; Provisional
Probab=27.51 E-value=7e+02 Score=25.71 Aligned_cols=169 Identities=12% Similarity=0.026 Sum_probs=80.8
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCcc-----chHH---H-----HHHHHHHHHHh---
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE-----CAED---A-----KTACKQLATYI--- 393 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~-----~~~~---~-----~~~~~~~~~~~--- 393 (680)
|||.++.. + .....++.|-.+.+....-+.+.|++...... ..++ . ++..+.+++..
T Consensus 6 ILv~~D~s------~-~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (305)
T PRK11175 6 ILVVIDPN------Q-DDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPY 78 (305)
T ss_pred EEEEcCCC------c-cccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887542 1 22356688888876544445556766432100 0000 0 01111222222
Q ss_pred hhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHH-HHHHH-HhccceEEEEcCC
Q 005728 394 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVG-IINDC-IVANKAVVIVKGL 471 (680)
Q Consensus 394 ~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~-~i~~~-~~~~~~v~i~r~~ 471 (680)
+...++.-..+....+..+.+....+. -.++.|++|....- ...+.+.+ +-+.. ....+-|++.+.
T Consensus 79 ~~~~~~~~~~v~~~g~~~~~i~~~a~~-----~~~DLiV~G~~~~~------~~~~~~~gs~~~~l~~~~~~pvlvv~~- 146 (305)
T PRK11175 79 LDAGIPIEIKVVWHNRPFEAIIQEVIA-----GGHDLVVKMTHQHD------KLESVIFTPTDWHLLRKCPCPVLMVKD- 146 (305)
T ss_pred hhcCCceEEEEecCCCcHHHHHHHHHh-----cCCCEEEEeCCCCc------HHHhhccChhHHHHHhcCCCCEEEecc-
Confidence 223333323333346788888888876 67999999986420 01111111 11222 246788999885
Q ss_pred CCCCcccccCCCcceeEEEecC-C----hH-HHHHHHHhccCCCcCCCeeEEEEeec
Q 005728 472 DEWPNEYQRQYGTIDLYWIVRD-G----GL-MLLLSQLLLTKESFESCKIQVFCIAE 522 (680)
Q Consensus 472 ~~~p~~~~~~~g~IDvwW~~~d-G----gL-~Lll~~lL~~~~~W~~~klRvf~~~~ 522 (680)
+.++ ....|=+=+...+ + .| ...+-+.+..-+.+.++++.++.+.+
T Consensus 147 ~~~~-----~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~ 198 (305)
T PRK11175 147 QDWP-----EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYP 198 (305)
T ss_pred cccC-----CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEec
Confidence 2222 1233412221111 1 12 22344444433334478999988754
No 114
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=27.25 E-value=6e+02 Score=24.88 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=10.6
Q ss_pred CCCCchH-----HHHHHHHHHHHH
Q 005728 186 EGREPHI-----ATFFTAFICIGC 204 (680)
Q Consensus 186 k~~~P~~-----Aill~~~i~~i~ 204 (680)
++..|+. ++++.++++++-
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLls 112 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLS 112 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHH
Confidence 4455654 566666665443
No 115
>PRK12488 acetate permease; Provisional
Probab=26.74 E-value=1e+03 Score=27.38 Aligned_cols=37 Identities=22% Similarity=0.140 Sum_probs=19.1
Q ss_pred hhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHH
Q 005728 74 AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYV 111 (680)
Q Consensus 74 af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yi 111 (680)
.+.|.....+..=-.|| .|+.-|++.++.....++|+
T Consensus 273 g~~~~p~~~qR~~aaks-~k~ar~s~~~~~~~~~~~~~ 309 (549)
T PRK12488 273 GTAGLPHILMRFFTVSD-AREARKSVLYATGFIGYFYL 309 (549)
T ss_pred HhccCcHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333455 35677777777655544444
No 116
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=24.75 E-value=1e+03 Score=26.67 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHH
Q 005728 151 STLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCV 205 (680)
Q Consensus 151 s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~ 205 (680)
+.++++....++.|+.+..+=-|+.=|+.+. | .++++++++.+++-
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm--------~-~gLilsai~nil~G 112 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYFM--------A-FGLILSAIVNILFG 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCceee--------h-HHHHHHHHHHHHHh
Confidence 4556677778899999988888887777542 1 35555655554443
No 117
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=24.50 E-value=3.3e+02 Score=31.19 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhhh
Q 005728 64 FNALVGLFFPAVTGI 78 (680)
Q Consensus 64 f~~~~~i~f~af~G~ 78 (680)
++.++.+++++..|+
T Consensus 275 l~~~~~~~~~a~~g~ 289 (521)
T PF02990_consen 275 LFMALVTLFFAALGF 289 (521)
T ss_pred hHHHHHHHHHHHhhh
Confidence 344555666666664
No 118
>PRK10116 universal stress protein UspC; Provisional
Probab=24.33 E-value=5.1e+02 Score=23.06 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=61.6
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCC-----cc-chHHH-HHHHHHHHHHhhh----cc
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY-----HE-CAEDA-KTACKQLATYIDY----KR 397 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~-----~~-~~~~~-~~~~~~~~~~~~~----~~ 397 (680)
.|||.++.. . ....++++|..|.+....-+.++|++.... .. ..++. ++..++.++++++ .+
T Consensus 5 ~ILv~~D~s------~-~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (142)
T PRK10116 5 NILVAVAVT------P-ESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDAD 77 (142)
T ss_pred eEEEEccCC------c-chHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477777532 1 233577888888764334566677764321 00 00111 1222233333432 22
Q ss_pred ccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHH-hccceEEEEc
Q 005728 398 CEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVK 469 (680)
Q Consensus 398 ~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~-~~~~~v~i~r 469 (680)
+..-...+...+..+++....+. ..++.|++|=... . . ...+..+-+.++ ..++.|+++|
T Consensus 78 ~~~~~~~~~~G~~~~~I~~~a~~-----~~~DLiV~g~~~~---~---~-~~~~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 78 YPIEKTFIAYGELSEHILEVCRK-----HHFDLVICGNHNH---S---F-FSRASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred CCeEEEEEecCCHHHHHHHHHHH-----hCCCEEEEcCCcc---h---H-HHHHHHHHHHHHhcCCCCEEEEe
Confidence 22222344456778888888875 6788999985432 0 0 111222222222 4567788776
No 119
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.94 E-value=2.3e+02 Score=23.34 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC
Q 005728 275 VVSLALASLIYYYVCLKGKAGD 296 (680)
Q Consensus 275 ~i~~~i~~~iy~~~~~~~~~~~ 296 (680)
++++++.+.+|.+.+|+.+.+.
T Consensus 11 iiF~ifVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 11 TIFVLFVAPIWLWLHYRSKRQG 32 (75)
T ss_pred HHHHHHHHHHHHHHhhcccccC
Confidence 3445566677777777765443
No 120
>PRK10490 sensor protein KdpD; Provisional
Probab=23.63 E-value=5.9e+02 Score=31.39 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=53.1
Q ss_pred CCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHHHhh-hccccceEEEE
Q 005728 327 YPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYID-YKRCEGVAEIV 405 (680)
Q Consensus 327 RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 405 (680)
|..+||.+++. +....|++-+..+++...+-..++||..++.+...++.+ +++.+.++ .++..|=...+
T Consensus 250 ~eriLV~v~~~-------~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~---~~l~~~~~lA~~lGa~~~~~ 319 (895)
T PRK10490 250 RDAILLCIGHN-------TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKR---RAILSALRLAQELGAETATL 319 (895)
T ss_pred CCeEEEEECCC-------cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHH---HHHHHHHHHHHHcCCEEEEE
Confidence 34588888642 234579999999987766677888987654322222211 12222222 23344445677
Q ss_pred ecCCHHHHHHHHHHHcCC
Q 005728 406 VAPNMSEGFRGIVQTMGL 423 (680)
Q Consensus 406 ~~~~~~~g~~~liq~~Gl 423 (680)
..+|+.+.+....+..|.
T Consensus 320 ~~~dva~~i~~~A~~~~v 337 (895)
T PRK10490 320 SDPAEEKAVLRYAREHNL 337 (895)
T ss_pred eCCCHHHHHHHHHHHhCC
Confidence 788888888888887654
No 121
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=23.29 E-value=2e+02 Score=29.08 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCccEEEEeCCCCCCCCCchhhHhHHHHHhcCCCceEEEccCCce
Q 005728 630 RMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRD 674 (680)
Q Consensus 630 ~~a~Lv~~~LP~p~~~~~~~~Ym~~le~lt~~lpp~llVrG~~~~ 674 (680)
.++++||+.==..........|.++++.|.+--.|++.|+||+..
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 467777765222222222446889999997433699999999874
No 122
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=23.11 E-value=9.6e+02 Score=25.83 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHH-HHHHhcccchhhHhHhHHHHhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005728 101 AATLTTTALYVIS-VLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAA 169 (680)
Q Consensus 101 ~ai~i~~v~Yil~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~a 169 (680)
.++++++++|.+. .+.+-..-.-+...-.+......+..++.+..+.+++..++++...+.+++-.+..
T Consensus 40 ~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e 109 (349)
T COG3949 40 LGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEE 109 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 4566667777643 22221111111111113334444444577888889999999988888888755433
No 123
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=22.47 E-value=5.9e+02 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=8.5
Q ss_pred HHHHHHHhhcCCCCCC
Q 005728 282 SLIYYYVCLKGKAGDW 297 (680)
Q Consensus 282 ~~iy~~~~~~~~~~~w 297 (680)
+.+.+.+.+|+..-+|
T Consensus 105 l~vg~~Y~~kkgaL~W 120 (123)
T COG0838 105 LLVGFVYAWKKGALEW 120 (123)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3344455566655555
No 124
>PRK11281 hypothetical protein; Provisional
Probab=22.39 E-value=1.7e+03 Score=28.34 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=15.1
Q ss_pred eecCcchHHHHHHHHHHHHHh
Q 005728 520 IAEEDSDAEVLKADVKKFLYD 540 (680)
Q Consensus 520 ~~~~~~~~~~~~~~l~~ll~~ 540 (680)
-+..+++.++.++.+.+...+
T Consensus 1001 gV~Y~sDi~~v~~iL~eaa~~ 1021 (1113)
T PRK11281 1001 GVAYGSDLEKVRELLLQAATE 1021 (1113)
T ss_pred EeCCCCCHHHHHHHHHHHHHc
Confidence 345567888888888777655
No 125
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=21.43 E-value=1.6e+03 Score=27.73 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHhhhhh
Q 005728 62 WSFNALVGLFFPAVTGI 78 (680)
Q Consensus 62 ~~f~~~~~i~f~af~G~ 78 (680)
.+|...+++++|....+
T Consensus 596 sDfgv~iaI~~~t~v~~ 612 (900)
T TIGR00834 596 GDFGVPISILIMVLVDI 612 (900)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 35555666666544433
No 126
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.09 E-value=9e+02 Score=28.30 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=25.2
Q ss_pred HHHHHHHhhhccccceEEEEecCCHHHHHHHHHHHcCC
Q 005728 386 CKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGL 423 (680)
Q Consensus 386 ~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~liq~~Gl 423 (680)
.++..+.+++++-..+ -.+.+|+++--+...++..|+
T Consensus 299 ~~~l~~~i~~~kPD~v-IlID~PgFNlrLAK~lkk~Gi 335 (608)
T PRK01021 299 YRKLYKTILKTNPRTV-ICIDFPDFHFLLIKKLRKRGY 335 (608)
T ss_pred HHHHHHHHHhcCCCEE-EEeCCCCCCHHHHHHHHhcCC
Confidence 3455566666665554 457789888888888888764
Done!