Query 005728
Match_columns 680
No_of_seqs 480 out of 2510
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g40_A Na-K-CL cotransporter; 100.0 1.8E-38 6E-43 319.2 19.1 263 312-674 7-281 (294)
2 3l1l_A Arginine/agmatine antip 99.9 8.8E-25 3E-29 241.6 25.7 232 61-297 190-436 (445)
3 4djk_A Probable glutamate/gamm 99.9 7.1E-25 2.4E-29 246.8 24.6 204 64-269 203-430 (511)
4 3gia_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 229.7 23.8 197 61-269 187-390 (444)
5 2jln_A MHP1; hydantoin, transp 93.5 3.7 0.00013 45.1 19.9 105 63-170 208-329 (501)
6 3loq_A Universal stress protei 89.7 4.9 0.00017 40.3 14.4 193 329-550 24-235 (294)
7 3mt0_A Uncharacterized protein 88.7 15 0.00051 36.5 17.2 190 329-550 9-221 (290)
8 3olq_A Universal stress protei 81.0 47 0.0016 33.1 17.9 199 329-550 9-250 (319)
9 3ab8_A Putative uncharacterize 80.6 30 0.001 33.7 14.7 193 330-550 3-220 (268)
10 3idf_A USP-like protein; unive 77.9 19 0.00064 31.0 10.9 94 329-437 3-111 (138)
11 3tnj_A Universal stress protei 72.8 20 0.0007 31.3 9.9 123 329-470 8-147 (150)
12 3s3t_A Nucleotide-binding prot 72.5 27 0.00094 30.2 10.7 96 329-437 7-118 (146)
13 3fdx_A Putative filament prote 72.3 33 0.0011 29.5 11.1 96 329-436 3-115 (143)
14 3fg9_A Protein of universal st 70.5 14 0.00048 32.8 8.2 99 329-437 17-129 (156)
15 3cis_A Uncharacterized protein 70.0 83 0.0028 31.2 15.0 187 329-541 21-239 (309)
16 3dlo_A Universal stress protei 66.9 24 0.00083 31.4 9.1 98 329-437 26-127 (155)
17 3hgm_A Universal stress protei 60.2 41 0.0014 29.0 9.2 97 329-437 4-120 (147)
18 3mt0_A Uncharacterized protein 50.2 60 0.002 32.0 9.5 111 348-469 155-275 (290)
19 1tq8_A Hypothetical protein RV 48.7 69 0.0024 28.6 8.9 96 329-437 19-129 (163)
20 1jmv_A USPA, universal stress 45.4 62 0.0021 27.6 7.8 122 329-470 4-138 (141)
21 3olq_A Universal stress protei 43.4 2.5E+02 0.0085 27.6 13.6 112 348-470 177-305 (319)
22 2dum_A Hypothetical protein PH 40.8 1.6E+02 0.0054 25.9 10.1 124 329-470 7-156 (170)
23 2z08_A Universal stress protei 35.7 1.5E+02 0.0051 25.0 8.6 96 329-437 4-109 (137)
24 3dh4_A Sodium/glucose cotransp 35.7 4.5E+02 0.016 28.4 17.1 40 135-177 316-355 (530)
25 3twe_A Alpha4H; unknown functi 34.9 23 0.00079 21.2 1.9 17 526-542 9-25 (27)
26 1mjh_A Protein (ATP-binding do 33.9 2.3E+02 0.008 24.5 10.0 123 329-470 7-159 (162)
27 2xq2_A Sodium/glucose cotransp 31.1 4.7E+02 0.016 28.7 13.8 39 134-175 344-382 (593)
28 3loq_A Universal stress protei 28.9 1.4E+02 0.0048 29.2 8.2 117 329-470 172-290 (294)
29 3ctr_A Poly(A)-specific ribonu 20.2 30 0.001 28.9 0.9 17 427-443 5-21 (101)
No 1
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.8e-38 Score=319.23 Aligned_cols=263 Identities=14% Similarity=0.161 Sum_probs=199.2
Q ss_pred HHHhcCCCCCCCCCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHH
Q 005728 312 SLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLAT 391 (680)
Q Consensus 312 ~l~~l~~~~~~~k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 391 (680)
...++. .+++|||||++||+++.| ..+..|++|++.++ +++|++.+++|+..+..+.. .++ .+.+++
T Consensus 7 ~~~~~~--~~~~knWrP~iLV~sg~p-------~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~~~l--~~q-l~~l~~ 73 (294)
T 3g40_A 7 KTNSLT--SSSERTWKANLLVPVEDP-------RELMGTFDFLRDIT-YPKGSVKLLGLAGNTDKENL--LSQ-LPSISE 73 (294)
T ss_dssp --------------CCCEEEEEESCH-------HHHHHHHHHHHHHH-TTTCEEEEEECC---CTTCH--HHH-HHHHHH
T ss_pred HHhcCC--CCCccCCCCcEEEecCCc-------hhhhhHHHHHHHhc-cCceeEEEEEEccCCCccHH--HHH-HHHHHH
Confidence 334444 468999999999999754 35789999999999 67999999999755422210 222 377899
Q ss_pred HhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHHhccceEEEEcCC
Q 005728 392 YIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGL 471 (680)
Q Consensus 392 ~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~ 471 (680)
+++++++.+|++++.++|+.+|+..++|++|+|+++||||+||||++.. ..++|+++++.+..+++||++++.-
T Consensus 74 ~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e------~~~~y~~~i~~~~~~~~nVlil~~~ 147 (294)
T 3g40_A 74 GFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD------RDEEIREIIRKASMYRMGVLLFSKH 147 (294)
T ss_dssp HHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG------GHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh------hhHHHHHHHHHHHHhCceEEEEecC
Confidence 9999999999999999999999999999999999999999999997642 3368999999999999999999742
Q ss_pred CCCCcccccCCCcceeE-------EE----ecCChHHHHHHHHhccCCCcCCCeeEEEEeecCcchHHHHHHHHHHHHHh
Q 005728 472 DEWPNEYQRQYGTIDLY-------WI----VRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD 540 (680)
Q Consensus 472 ~~~p~~~~~~~g~IDvw-------W~----~~dGgL~Lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~ 540 (680)
|+....++++|||| |. ..||+||+++||+|+++ | +++||+.++++++++.+++++.|++|++.
T Consensus 148 ---~~~~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~ 221 (294)
T 3g40_A 148 ---PQAGLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAEL 221 (294)
T ss_dssp ---TTTTTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---CccCCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 33334456899999 72 57999999999999886 8 99999999999999999999999999999
Q ss_pred cccccEEEEEecCCccccccCCCCChhhHHHHHHHHHhHhhhHHHhhHhhhhcCCCCCCCCCCcccChHHHHHHHHHhHH
Q 005728 541 LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLK 620 (680)
Q Consensus 541 ~RI~aev~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (680)
+||.|+..+|. .+++
T Consensus 222 ~Ri~a~~~vv~-~~F~---------------------------------------------------------------- 236 (294)
T 3g40_A 222 ARIPNVKMQVL-RENP---------------------------------------------------------------- 236 (294)
T ss_dssp HTCCSCEEEEE-SSCT----------------------------------------------------------------
T ss_pred hcCCceEEEec-CchH----------------------------------------------------------------
Confidence 99999987663 2211
Q ss_pred HHHHHHhcCCCccEEEEeCCCCCCCCCchhhHhHHHHHhcCC-CceEEEccCCce
Q 005728 621 LNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENV-PRLLIVRGYRRD 674 (680)
Q Consensus 621 lneli~~~S~~a~Lv~~~LP~p~~~~~~~~Ym~~le~lt~~l-pp~llVrG~~~~ 674 (680)
|+|++ |++|+|+|+.||.-++ .+.++.+++.. .-+||||++|+|
T Consensus 237 --~il~~-s~~ADL~flGl~~~~d-------f~~~~~~~~~~~ssc~f~~dsg~e 281 (294)
T 3g40_A 237 --IKSSK-LPFASLHIFSLDPNPD-------LDLARHLMEKAGSSCIFALDSGEE 281 (294)
T ss_dssp --TTSSS-CCCCSEEEEECCSSCC-------HHHHHHHHHHHTSEEEEEECCSCC
T ss_pred --HHHhh-CcCCCEEEEcCCCCCc-------HHHHHHHHHhcCCeEEEEecCchh
Confidence 12233 5789999999966553 45566666555 378999999987
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.93 E-value=8.8e-25 Score=241.63 Aligned_cols=232 Identities=14% Similarity=0.182 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHH-HHHhcccchhhH-hHhHH---HHhh
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISV-LLFGAAATREEL-LTDRL---LTAT 135 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~-~~~g~~~~~~~~-~~~~~---~~~~ 135 (680)
..+++.++...+|+|+|+|.+++++||+|||+|++|||++.++++++++|++.. ...+..++.+.. ..+++ ....
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 269 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA 269 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999999644 444444433221 11122 2233
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHh-------h
Q 005728 136 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-------G 208 (680)
Q Consensus 136 ~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~-------~ 208 (680)
.+.....++.++++++++++.++.+++++|++++|||||.+|+.+. +.+|+++|++|++++++++.++.++ .
T Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~-~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
T 3l1l_A 270 LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA-RVNKAGTPVAGLIIVGILMTIFQLSSISPNATK 348 (445)
T ss_dssp HCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGG-CCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH-hcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 3333467889999999999999999999999999999999998765 4557899999999999987766543 3
Q ss_pred hhhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 005728 209 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLIS---WSFTVVSLALASLIY 285 (680)
Q Consensus 209 ~~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~---~~~~~i~~~i~~~iy 285 (680)
.++.+.++.+++.+++|++++++++++|+++ | +++++ ..++++++|.+.|+++++..+ +...++++++++++|
T Consensus 349 ~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~-~--~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y 424 (445)
T 3l1l_A 349 EFGLVSSVSVIFTLVPYLYTCAALLLLGHGH-F--GKARP-AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMY 424 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-S--GGGCT-TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-c--ccccc-hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999998764 3 33332 256788999999988887754 345566777888888
Q ss_pred HHHhhcCCCCCC
Q 005728 286 YYVCLKGKAGDW 297 (680)
Q Consensus 286 ~~~~~~~~~~~w 297 (680)
++.+++++++..
T Consensus 425 ~~~~~~~~~~~~ 436 (445)
T 3l1l_A 425 ALNYNRLHKNPY 436 (445)
T ss_dssp HHHHSTTCCCSS
T ss_pred HHHhhhcccCcc
Confidence 887766655543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.93 E-value=7.1e-25 Score=246.81 Aligned_cols=204 Identities=16% Similarity=0.220 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHH-hcccchhhHhH----hHHHH--hhc
Q 005728 64 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLF-GAAATREELLT----DRLLT--ATI 136 (680)
Q Consensus 64 f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~-g~~~~~~~~~~----~~~~~--~~~ 136 (680)
++.++...+|+|+|+|++++++||+|||+|++|||++.++++++++|++..+.+ +..++.+.... +++.. ...
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHV 282 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHh
Confidence 345677889999999999999999999999999999999999999999654444 44443332211 12211 223
Q ss_pred c---chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHH-HHHHHhhh---
Q 005728 137 A---WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFIC-IGCVIIGN--- 209 (680)
Q Consensus 137 ~---~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~-~i~~l~~~--- 209 (680)
+ .....++.++++++.+++.+++++++||++++|||||.+|+.+. +.+|+++|++|++++.++. ++++.+++
T Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~-~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~ 361 (511)
T 4djk_A 283 APEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFA-KMNKNGVPVTLVISQLVITSIALIILTNTGG 361 (511)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCC-CCCSSSCCCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHH-hcCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 3 22367888889999999999999999999999999999998764 4567899999999985443 33444444
Q ss_pred -----hhhHHhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccc-h----hhHHHHHHHHHHHHHHHH
Q 005728 210 -----LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-H----WSLSLLGSVFCIVIMFLI 269 (680)
Q Consensus 210 -----~~~i~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~-~----~~~~llg~v~~~~~~~~i 269 (680)
++.+.++.+++++++|++++++++++|+++ |+.+++||.+ . +.+++++++.|++.++..
T Consensus 362 ~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (511)
T 4djk_A 362 GNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKH-PDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVS 430 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCeecCCCchHHHHHHHHHHHHHHHHHHee
Confidence 688999999999999999999999998875 4444458876 1 456777888887777653
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.91 E-value=2.7e-23 Score=229.75 Aligned_cols=197 Identities=16% Similarity=0.218 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHH-HHhcccchhhHhH---hHHH---H
Q 005728 61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFGAAATREELLT---DRLL---T 133 (680)
Q Consensus 61 ~~~f~~~~~i~f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~-~~g~~~~~~~~~~---~~~~---~ 133 (680)
..+++.++...+|+|+|+|++++++||+|||+|++|||++.++++++++|++..+ ..+..+ .+.... .++. .
T Consensus 187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ 265 (444)
T 3gia_A 187 VSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLP-IDELIKASENALAVAAK 265 (444)
T ss_dssp HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-HHHHHHTGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHhcccchhHHHHHH
Confidence 3468888999999999999999999999999999999999999999999996544 444444 333321 1221 1
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhH
Q 005728 134 ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLI 213 (680)
Q Consensus 134 ~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~k~~~P~~Aill~~~i~~i~~l~~~~~~i 213 (680)
...+.....++.++++++++++.++.++++||++++|||||.+|+.+. +.+ +++|.+|++++++++.++.++.+++.+
T Consensus 266 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~-~~~-~~~P~~a~~~~~~~~~~~~~~~~~~~l 343 (444)
T 3gia_A 266 PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFE-RKV-WFKSTEGLYITSALGVLFALLFNMEGV 343 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCC-TTS-CCSCTHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHh-CCC-CCCCcHHHHHHHHHHHHHHHHcCHHHH
Confidence 222333356788899999999999999999999999999999998764 334 467999999999999988888899999
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 005728 214 TPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLI 269 (680)
Q Consensus 214 ~~l~s~~~l~~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i 269 (680)
.++.+++++++|++++++++++|+++ |+ .++.+++|++.|+++++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~~~~~~~~~~~~~ 390 (444)
T 3gia_A 344 ASITSAVFMVIYLFVILSHYILIDEV-GG--------RKEIVIFSFIVVLGVFLLL 390 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH-CC--------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CC--------cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 21 2367888888888776664
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=93.50 E-value=3.7 Score=45.13 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=52.0
Q ss_pred HHHHHHHHH-HHhhhhhhhhhcccccccccccC-----------hhHHHHHHHHHHHHHHH-HHHHHHhcccchhhHhHh
Q 005728 63 SFNALVGLF-FPAVTGIMAGSNRSASLKDTQRS-----------IPIGTLAATLTTTALYV-ISVLLFGAAATREELLTD 129 (680)
Q Consensus 63 ~f~~~~~i~-f~af~G~e~~a~~s~E~knP~r~-----------IP~a~~~ai~i~~v~Yi-l~~~~~g~~~~~~~~~~~ 129 (680)
+|+.++..+ -+..++.-..+.++-..|+++.. .-.+...+..+..++.. +.+++.......+ + .+
T Consensus 208 ~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~d-p-~~ 285 (501)
T 2jln_A 208 PFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWN-P-VI 285 (501)
T ss_dssp CHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC-H-HH
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-H-HH
Confidence 566665542 33334556677888888886551 33444444443333322 3222211111111 0 11
Q ss_pred HHHHhhc-cchh-HHHHH-HHHHHHHHHHHH-HHHhhHHHHHHHH
Q 005728 130 RLLTATI-AWPF-PAVIH-IGIILSTLGAAL-QSLTGAPRLLAAI 170 (680)
Q Consensus 130 ~~~~~~~-~~~~-~~ii~-ig~~~s~lss~~-~~l~~~sR~l~am 170 (680)
...... +... ..+.. +.++++++++.. +.+++++--++.+
T Consensus 286 -~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 286 -AITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp -HHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred -HHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 112211 2222 35556 667777777666 4788888877776
No 6
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=89.69 E-value=4.9 Score=40.30 Aligned_cols=193 Identities=9% Similarity=0.018 Sum_probs=99.0
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCc---------cc-hH----HHHHHHHHHHHHhh
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH---------EC-AE----DAKTACKQLATYID 394 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~---------~~-~~----~~~~~~~~~~~~~~ 394 (680)
.|||.++.. +.....+++|..+.+....-+.++||+..+.. +. .+ +.++..++..+.++
T Consensus 24 ~ILv~vD~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (294)
T 3loq_A 24 AMLLPTDLS-------ENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIE 96 (294)
T ss_dssp EEEEECCSC-------TGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCC-------HHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888532 12346779999998765566777888765321 00 01 11122233344444
Q ss_pred hccccceEEEEe-cCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHH-HhccceEEEEcCC
Q 005728 395 YKRCEGVAEIVV-APNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDC-IVANKAVVIVKGL 471 (680)
Q Consensus 395 ~~~~~~f~~~~~-~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~-~~~~~~v~i~r~~ 471 (680)
..+++.-...+. ..+..+++ ..+. .+.+.|+||...... ....+. .+.+.+ ....+-|++++.-
T Consensus 97 ~~g~~~~~~~v~~~g~~~~~I--~a~~-----~~~DliV~G~~g~~~------~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 163 (294)
T 3loq_A 97 AAGIKAEVIKPFPAGDPVVEI--IKAS-----ENYSFIAMGSRGASK------FKKILLGSVSEGVLHDSKVPVYIFKHD 163 (294)
T ss_dssp HTTCEEEECSSCCEECHHHHH--HHHH-----TTSSEEEEECCCCCH------HHHHHHCCHHHHHHHHCSSCEEEECCC
T ss_pred HcCCCcceeEeeccCChhHhe--eecc-----CCCCEEEEcCCCCcc------ccceeeccHHHHHHhcCCCCEEEecCc
Confidence 444433220133 56788888 5554 679999999865311 001111 112222 2467889998853
Q ss_pred CCCCcccccCCCcceeEEEecCChH--HHHHHHHhccCCCcCCCeeEEEEeecCcchHHHHHHHHHHHHHhcccccEEEE
Q 005728 472 DEWPNEYQRQYGTIDLYWIVRDGGL--MLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIV 549 (680)
Q Consensus 472 ~~~p~~~~~~~g~IDvwW~~~dGgL--~Lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI~aev~v 549 (680)
..+ ....++|=+=| ||+= .-.+.+.+..-+. .+++++++.+.+... .++..+++.+.+.+.-++.+..+
T Consensus 164 ~~~----~~~~~~Ilv~~---d~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~-~~~~l~~~~~~l~~~~~~~~~~~ 234 (294)
T 3loq_A 164 MVV----NSLFDRVLVAY---DFSKWADRALEYAKFVVKK-TGGELHIIHVSEDGD-KTADLRVMEEVIGAEGIEVHVHI 234 (294)
T ss_dssp TTT----TCTTSEEEEEC---CSSHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSC-CHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccc----CccCCEEEEEE---CCCHHHHHHHHHHHHHhhh-cCCEEEEEEEccCch-HHHHHHHHHHHHHHcCCcEEEEE
Confidence 211 12234453333 3321 1112222221111 268999999887654 33444556666666666666554
Q ss_pred E
Q 005728 550 I 550 (680)
Q Consensus 550 i 550 (680)
.
T Consensus 235 ~ 235 (294)
T 3loq_A 235 E 235 (294)
T ss_dssp E
T ss_pred e
Confidence 4
No 7
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=88.71 E-value=15 Score=36.53 Aligned_cols=190 Identities=9% Similarity=-0.010 Sum_probs=103.2
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHHHhhhccccceEEEEecC
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAP 408 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 408 (680)
.+||.++.. +.....+++|..+.+....-+.++|+... ++ .++..++..+.++..+++.-..+....
T Consensus 9 ~ILv~~D~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~--~~----~~~~l~~~~~~~~~~~~~~~~~~~~~g 75 (290)
T 3mt0_A 9 SILVVIEPD-------QLEGLALKRAQLIAGVTQSHLHLLVCEKR--RD----HSAALNDLAQELREEGYSVSTNQAWKD 75 (290)
T ss_dssp EEEEECCSS-------CSCCHHHHHHHHHHHHHCCEEEEEEECSS--SC----CHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCC-------ccchHHHHHHHHHHHhcCCeEEEEEeeCc--HH----HHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 478887532 12335678988888754455677788752 11 122223334444555665544444467
Q ss_pred CHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHH-HhccceEEEEcCCCCCCcccccCCCccee
Q 005728 409 NMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDC-IVANKAVVIVKGLDEWPNEYQRQYGTIDL 487 (680)
Q Consensus 409 ~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~-~~~~~~v~i~r~~~~~p~~~~~~~g~IDv 487 (680)
+..+++....+. ...+.|+||....-.-.. .. +-.+.... ...++-|++++.-..+ ..++|=+
T Consensus 76 ~~~~~i~~~a~~-----~~~dliV~G~~~~~~~~~--~~---~gs~~~~vl~~~~~PVlvv~~~~~~------~~~~Ilv 139 (290)
T 3mt0_A 76 SLHQTIIAEQQA-----EGCGLIIKQHFPDNPLKK--AI---LTPDDWKLLRFAPCPVLMTKTARPW------TGGKILA 139 (290)
T ss_dssp SHHHHHHHHHHH-----HTCSEEEEECCCSCTTST--TS---CCHHHHHHHHHCSSCEEEECCCSCS------TTCEEEE
T ss_pred CHHHHHHHHHHh-----cCCCEEEEecccCCchhh--cc---cCHHHHHHHhcCCCCEEEecCCCCC------CCCeEEE
Confidence 889998888776 568999999875311110 00 11222222 2467889998832211 2345644
Q ss_pred EEEecCC--------hHHHHHHHHhccCCCcCCCeeEEEEeecCcc-------------hHHHHHHHHHHHHHhcccc-c
Q 005728 488 YWIVRDG--------GLMLLLSQLLLTKESFESCKIQVFCIAEEDS-------------DAEVLKADVKKFLYDLRMQ-A 545 (680)
Q Consensus 488 wW~~~dG--------gL~Lll~~lL~~~~~W~~~klRvf~~~~~~~-------------~~~~~~~~l~~ll~~~RI~-a 545 (680)
=|...+. --.+-.+.-|.+. .+++|.++.+.+... ..++.++.++++++++-++ .
T Consensus 140 a~D~s~~~~~~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 216 (290)
T 3mt0_A 140 AVDVGNNDGEHRSLHAGIISHAYDIAGL---AKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDE 216 (290)
T ss_dssp EECTTCCSHHHHHHHHHHHHHHHHHHHH---TTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred EECCCCcchhhhHHHHHHHHHHHHHHHH---cCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4433332 1133333333222 269999998876421 1334566777788777664 3
Q ss_pred EEEEE
Q 005728 546 EVIVI 550 (680)
Q Consensus 546 ev~vi 550 (680)
+..+.
T Consensus 217 ~~~v~ 221 (290)
T 3mt0_A 217 QLHIE 221 (290)
T ss_dssp TEEEE
T ss_pred eEEEe
Confidence 44443
No 8
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=81.01 E-value=47 Score=33.12 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=100.8
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCc--------cchHHH-----HHHHHHHHHH---
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH--------ECAEDA-----KTACKQLATY--- 392 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~--------~~~~~~-----~~~~~~~~~~--- 392 (680)
.|||.++.. +.....+++|-.+.+....-+.+.|++..... ...++. ++..+.+++.
T Consensus 9 ~ILv~~D~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (319)
T 3olq_A 9 NLLVVIDPN-------QDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY 81 (319)
T ss_dssp EEEEECCTT-------CSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC-------cccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488887532 12335678888888654455677888753210 001111 1112222222
Q ss_pred hhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHH-HhccceEEEEcCC
Q 005728 393 IDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDC-IVANKAVVIVKGL 471 (680)
Q Consensus 393 ~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~-~~~~~~v~i~r~~ 471 (680)
++..+++.-..+....+..+++....+. ...+.|+||....-. .... -+-.+...+ ...++-|+++++-
T Consensus 82 ~~~~~v~~~~~~~~~g~~~~~i~~~a~~-----~~~DLiV~G~~g~~~---~~~~--~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVIT-----DKHDLLIKMAHQHDK---LGSL--IFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHH-----HTCSEEEEEEBCC-----CCSC--BCCHHHHHHHHHCSSCEEEEESS
T ss_pred HhhcCCeEEEEEEecCChHHHHHHHHHh-----cCCCEEEEecCcCch---hhcc--cccccHHHHHhcCCCCEEEecCc
Confidence 2234454444444367899888888875 457999999875311 1110 011122222 2567889998852
Q ss_pred CCCCcccccCCCcceeEEEecCCh-----H-HHHHHHHhccCCCcC-CCeeEEEEeecCcc------------------h
Q 005728 472 DEWPNEYQRQYGTIDLYWIVRDGG-----L-MLLLSQLLLTKESFE-SCKIQVFCIAEEDS------------------D 526 (680)
Q Consensus 472 ~~~p~~~~~~~g~IDvwW~~~dGg-----L-~Lll~~lL~~~~~W~-~~klRvf~~~~~~~------------------~ 526 (680)
. + ...++|=|=|...+.. + .-.+.+.+..-+.+. +++|+++.+.+... .
T Consensus 152 ~-~-----~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 225 (319)
T 3olq_A 152 E-W-----PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNAL 225 (319)
T ss_dssp C-C-----CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHH
T ss_pred c-c-----ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHH
Confidence 1 1 1234453444332211 1 222333333222231 68999998865421 1
Q ss_pred HHHHHHHHHHHHHhcccc-cEEEEE
Q 005728 527 AEVLKADVKKFLYDLRMQ-AEVIVI 550 (680)
Q Consensus 527 ~~~~~~~l~~ll~~~RI~-aev~vi 550 (680)
.++.++.++++++++.+. .+..+.
T Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~v~ 250 (319)
T 3olq_A 226 RGQHLIAMKELRQKFSIPEEKTHVK 250 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEe
Confidence 233466777777777664 334443
No 9
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=80.58 E-value=30 Score=33.66 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=92.7
Q ss_pred eEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCc------------cch--------HH----HHHH
Q 005728 330 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH------------ECA--------ED----AKTA 385 (680)
Q Consensus 330 iLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~------------~~~--------~~----~~~~ 385 (680)
|||.++.. +.....+++|..+.+....-+.++||+..+.. +.. ++ .++.
T Consensus 3 ILv~vD~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 3 ILLATDGS-------PQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp EEEECCSC-------GGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-------HHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777531 22345778888887643445677888753210 000 00 1111
Q ss_pred HHHHHHHhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHH-hccce
Q 005728 386 CKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKA 464 (680)
Q Consensus 386 ~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~-~~~~~ 464 (680)
.++..+.++...++.-.. +...+..+.+... .-+.+.|+||-..... ..... -+-.+.+.+. ..++-
T Consensus 76 l~~~~~~~~~~g~~~~~~-~~~g~~~~~I~~~-------~~~~dliV~G~~g~~~--~~~~~--~~Gs~~~~v~~~a~~P 143 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAV-LEEGVPHEAILRR-------ARAADLLVLGRSGEAH--GDGFG--GLGSTADRVLRASPVP 143 (268)
T ss_dssp HHHHHHHHHHTTCCEEEE-EEEECHHHHHHHH-------HTTCSEEEEESSCTTS--CTTCC--SCCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCCCCeEEE-EecCCHHHHHHhh-------ccCCCEEEEeccCCCc--ccccc--ccchhHHHHHHhCCCC
Confidence 222333333444543222 3345666666555 4689999999875310 11110 0111222222 46788
Q ss_pred EEEEcCCCCCCcccccCCCcceeEEEecCChHHHHHHHHhccCCCcCCCeeEEEEeecCcchHHHHHHHHHHHHHhcccc
Q 005728 465 VVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQ 544 (680)
Q Consensus 465 v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~Lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI~ 544 (680)
|++.+.-. + ..++|=+=|...+... -.+.+....-+. .+++++++.+.+..++.++.-+++.+.+.+.-++
T Consensus 144 Vlvv~~~~--~-----~~~~ilv~~d~s~~~~-~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~ 214 (268)
T 3ab8_A 144 VLLAPGEP--V-----ELEGALLGYDASESAV-RALHALAPLARA-LGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVE 214 (268)
T ss_dssp EEEECSSC--C-----CCCEEEEECCSCHHHH-HHHHHHHHHHHH-HTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCC--C-----CCCEEEEEECCCHHHH-HHHHHHHHhhhc-CCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCc
Confidence 99988421 1 1234423332111111 123332221111 2689999988876544444445555666655555
Q ss_pred cEEEEE
Q 005728 545 AEVIVI 550 (680)
Q Consensus 545 aev~vi 550 (680)
.+..+.
T Consensus 215 ~~~~~~ 220 (268)
T 3ab8_A 215 ASALVL 220 (268)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 555543
No 10
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=77.95 E-value=19 Score=31.02 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=54.9
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhh-hCCCeeEEEEEEEeCCCccch--------------HHHHHHHHHHHHHh
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMK-KKGRGMSIFVSILDGDYHECA--------------EDAKTACKQLATYI 393 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~-k~~~g~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~ 393 (680)
.+||.++.. +.....+++|..+. +....-+.++||...+..... ++.++..+++.+.+
T Consensus 3 ~ILv~~D~s-------~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (138)
T 3idf_A 3 KLLFAIDDT-------EACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF 75 (138)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777431 22446789999998 765667778899876432110 11122223344445
Q ss_pred hhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 394 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 394 ~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
+..+++.-..+ ...+..+.+....+ +.+.++||-..
T Consensus 76 ~~~g~~~~~~v-~~g~~~~~I~~~a~-------~~dliV~G~~~ 111 (138)
T 3idf_A 76 TEKGINPFVVI-KEGEPVEMVLEEAK-------DYNLLIIGSSE 111 (138)
T ss_dssp HTTTCCCEEEE-EESCHHHHHHHHHT-------TCSEEEEECCT
T ss_pred HHCCCCeEEEE-ecCChHHHHHHHHh-------cCCEEEEeCCC
Confidence 54455543333 34467766666555 89999999864
No 11
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=72.76 E-value=20 Score=31.28 Aligned_cols=123 Identities=10% Similarity=0.015 Sum_probs=70.0
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCC--------------ccchHH-HHHHHHHHHHHh
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY--------------HECAED-AKTACKQLATYI 393 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~--------------~~~~~~-~~~~~~~~~~~~ 393 (680)
.+||.++.. +.....+++|..+.+....-+.++||..... .+..++ .++..+.++++.
T Consensus 8 ~ILv~vD~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (150)
T 3tnj_A 8 HILLAVDFS-------SEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG 80 (150)
T ss_dssp EEEEECCCS-------TTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 478887531 1244677888888865345567788875421 111122 223445666666
Q ss_pred hhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHHH-hccceEEEEcC
Q 005728 394 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDCI-VANKAVVIVKG 470 (680)
Q Consensus 394 ~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~~-~~~~~v~i~r~ 470 (680)
++.+++.....+...+..+.+....+. .+.+.|+||-...-.-. .+. .+.+.++ ...+-|+++|.
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~~~~~~~-------~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 81 NTLGIDPAHRWLVWGEPREEIIRIAEQ-----ENVDLIVVGSHGRHGLA-------LLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HHHTCCGGGEEEEESCHHHHHHHHHHH-----TTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEEC
T ss_pred HHcCCCcceEEEecCCHHHHHHHHHHH-----cCCCEEEEecCCCCCcC-------eEecchHHHHHHhCCCCEEEEeC
Confidence 666666544455667888898888886 67899999976431100 011 1222222 46788888874
No 12
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=72.52 E-value=27 Score=30.18 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=54.7
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccch----------H----HHHHHHHHHHHHhh
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECA----------E----DAKTACKQLATYID 394 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~----------~----~~~~~~~~~~~~~~ 394 (680)
.|||.++.. +.....+++|..+.+....-+.++||+........ + +.++..+++.+.++
T Consensus 7 ~ILv~~D~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (146)
T 3s3t_A 7 NILVPVDSS-------DAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVA 79 (146)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCCC-------HHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478887531 12346778888887653455677898865421110 1 11112223334444
Q ss_pred hccc-cceEEEEecCCHHHHHHH-HHHHcCCCCCcccEEEccCcc
Q 005728 395 YKRC-EGVAEIVVAPNMSEGFRG-IVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 395 ~~~~-~~f~~~~~~~~~~~g~~~-liq~~GlG~l~PNtv~lg~~~ 437 (680)
+.++ +.-.. +...+..+.+.. ..+. .+.+.++||-..
T Consensus 80 ~~g~~~~~~~-~~~g~~~~~I~~~~a~~-----~~~dliV~G~~~ 118 (146)
T 3s3t_A 80 TTSAPNLKTE-ISYGIPKHTIEDYAKQH-----PEIDLIVLGATG 118 (146)
T ss_dssp TSSCCCCEEE-EEEECHHHHHHHHHHHS-----TTCCEEEEESCC
T ss_pred hcCCcceEEE-EecCChHHHHHHHHHhh-----cCCCEEEECCCC
Confidence 4445 33233 344478888777 7764 678999999764
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=72.34 E-value=33 Score=29.53 Aligned_cols=96 Identities=8% Similarity=0.009 Sum_probs=57.6
Q ss_pred ceEEeeCCCCCCCCCCCC--chhHhhhHHHhhhCCCeeEEEEEEEeCCCc------------cch-HHHHHHHHHHHHHh
Q 005728 329 IPLIFCRPWGKLPENVPC--HPKLADFANCMKKKGRGMSIFVSILDGDYH------------ECA-EDAKTACKQLATYI 393 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~--~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~------------~~~-~~~~~~~~~~~~~~ 393 (680)
.+||.++.. +. ....+++|..+.+....-+.++||...... +.. +..++..+++++++
T Consensus 3 ~ILv~vD~s-------~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (143)
T 3fdx_A 3 AILVPIDIS-------DKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIA 75 (143)
T ss_dssp EEEEECCTT-------CSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC-------hHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 377777531 12 235678888887643455677888765211 001 12233445666777
Q ss_pred hhccccc--eEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCc
Q 005728 394 DYKRCEG--VAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYP 436 (680)
Q Consensus 394 ~~~~~~~--f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~ 436 (680)
++....+ ....+...+..+.+....+. .+.+.++||-.
T Consensus 76 ~~~~~~~~~v~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~ 115 (143)
T 3fdx_A 76 KKFSIPEDRMHFHVAEGSPKDKILALAKS-----LPADLVIIASH 115 (143)
T ss_dssp TTSCCCGGGEEEEEEESCHHHHHHHHHHH-----TTCSEEEEESS
T ss_pred HHcCCCCCceEEEEEecChHHHHHHHHHH-----hCCCEEEEeCC
Confidence 6665544 22334455888888888886 67899999986
No 14
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=70.46 E-value=14 Score=32.77 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=56.9
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCcc----ch--------HHHHHHHHHHHHHhhhc
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE----CA--------EDAKTACKQLATYIDYK 396 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~----~~--------~~~~~~~~~~~~~~~~~ 396 (680)
.|||.++.. .. +.....+++|..+.+....-+.++||+...... .. ++.++..+++.+.++..
T Consensus 17 ~ILv~vD~~----~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (156)
T 3fg9_A 17 RILLTVDED----DN-TSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR 91 (156)
T ss_dssp -EEEECCSC----CC-HHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC----CC-HHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 588888510 11 223456788888876544556788988653210 00 11112223334445555
Q ss_pred cccceEEEEec-CCHHHHHHHH-HHHcCCCCCcccEEEccCcc
Q 005728 397 RCEGVAEIVVA-PNMSEGFRGI-VQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 397 ~~~~f~~~~~~-~~~~~g~~~l-iq~~GlG~l~PNtv~lg~~~ 437 (680)
+++.+...+.. .+..+.+... .+. .+.+.|+||-..
T Consensus 92 g~~~~~~~v~~~g~~~~~I~~~~a~~-----~~~DlIV~G~~g 129 (156)
T 3fg9_A 92 GVNQVEPLVYEGGDVDDVILEQVIPE-----FKPDLLVTGADT 129 (156)
T ss_dssp TCSSEEEEEEECSCHHHHHHHTHHHH-----HCCSEEEEETTC
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHh-----cCCCEEEECCCC
Confidence 66433333444 7899998887 665 678999999864
No 15
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=70.04 E-value=83 Score=31.25 Aligned_cols=187 Identities=7% Similarity=-0.027 Sum_probs=88.6
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCcc------chH-------HHHHHHHHHHHHhhh
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE------CAE-------DAKTACKQLATYIDY 395 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~------~~~-------~~~~~~~~~~~~~~~ 395 (680)
.|||.++.. +.....+++|..+.+....-+.++||+..+... ..+ +.++..++..+.+++
T Consensus 21 ~ILv~~D~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (309)
T 3cis_A 21 GIIVGIDDS-------PAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQ 93 (309)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC-------HHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 478877531 123457788888876433456778887532110 101 111222233444443
Q ss_pred c-----cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHH-HhccceEEEE
Q 005728 396 K-----RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDC-IVANKAVVIV 468 (680)
Q Consensus 396 ~-----~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~-~~~~~~v~i~ 468 (680)
. +++.-.. +...+..+.+....+ +.+.|+||...... .. ..++ .+.+.+ ...++-|+++
T Consensus 94 ~~~~~~~~~~~~~-~~~g~~~~~I~~~a~-------~~DliV~G~~g~~~---~~---~~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 94 ASLRAGPPTVHSE-IVPAAAVPTLVDMSK-------DAVLMVVGCLGSGR---WP---GRLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HCSSSCCSCEEEE-EESSCHHHHHHHHGG-------GEEEEEEESSCTTC---CT---TCCSCHHHHHHHHHCSSCEEEE
T ss_pred hcccCCCceEEEE-EecCCHHHHHHHHhc-------CCCEEEECCCCCcc---cc---ccccCcHHHHHHHhCCCCEEEE
Confidence 3 3333222 334566666555532 79999999875311 11 1111 122222 2467899999
Q ss_pred cCCCCCCcccccCCCcceeEEEecCChH-HHHHHHHhccCCCcCCCeeEEEEeecCcc-----------hHHHHHHHHHH
Q 005728 469 KGLDEWPNEYQRQYGTIDLYWIVRDGGL-MLLLSQLLLTKESFESCKIQVFCIAEEDS-----------DAEVLKADVKK 536 (680)
Q Consensus 469 r~~~~~p~~~~~~~g~IDvwW~~~dGgL-~Lll~~lL~~~~~W~~~klRvf~~~~~~~-----------~~~~~~~~l~~ 536 (680)
+.-...+ .....++|=|=|...+... .+-.+.-+.+. .+++|.++.+.+... ..++.++.+++
T Consensus 160 ~~~~~~~--~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (309)
T 3cis_A 160 HDEDSVM--PHPQQAPVLVGVDGSSASELATAIAFDEASR---RNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAE 234 (309)
T ss_dssp CTTCCCS--CSSCCCCEEEECCSSHHHHHHHHHHHHHHHH---TTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHH
T ss_pred cCCcccC--CCCCCCeEEEEeCCChHHHHHHHHHHHHHHh---cCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHH
Confidence 8532100 0112244533332211111 22222222221 268999998865421 22344556666
Q ss_pred HHHhc
Q 005728 537 FLYDL 541 (680)
Q Consensus 537 ll~~~ 541 (680)
++..+
T Consensus 235 ~~~~~ 239 (309)
T 3cis_A 235 RLAGW 239 (309)
T ss_dssp HHTTH
T ss_pred HHHHH
Confidence 66655
No 16
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=66.89 E-value=24 Score=31.42 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=59.1
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccch---HHHHHHHHHHHHHhhhccccceEEE-
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECA---EDAKTACKQLATYIDYKRCEGVAEI- 404 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~- 404 (680)
.|||.++.. .+.....+++|..+.+....-+.++||.+.+..... ++.++..++..+.+++..++.=.++
T Consensus 26 ~ILv~vD~~------s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 99 (155)
T 3dlo_A 26 PIVVAVDKK------SDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLL 99 (155)
T ss_dssp CEEEECCSS------SHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCC------CHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 478887530 123446778888887643445678898865422111 1222333344555555555543333
Q ss_pred EecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 405 VVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 405 ~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
+...+..+.+....+. .+.+.|+||-..
T Consensus 100 v~~G~~~~~I~~~a~~-----~~~DLIV~G~~g 127 (155)
T 3dlo_A 100 VRGKEPPDDIVDFADE-----VDAIAIVIGIRK 127 (155)
T ss_dssp ESSSCHHHHHHHHHHH-----TTCSEEEEECCE
T ss_pred ecCCCHHHHHHHHHHH-----cCCCEEEECCCC
Confidence 3346888888888886 678999999764
No 17
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=60.22 E-value=41 Score=28.97 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=57.9
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCC-----------------ccc-hHHHHHHHHHHH
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY-----------------HEC-AEDAKTACKQLA 390 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~-----------------~~~-~~~~~~~~~~~~ 390 (680)
.+||.++.. +.....+++|..+.+....-+.++||...+. .+. .++.++..++..
T Consensus 4 ~ILv~vD~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 4 RIMVPVDGS-------KGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAK 76 (147)
T ss_dssp EEEEECCSB-------HHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHH
Confidence 477777531 2234667888888764445567788876421 000 112223334455
Q ss_pred HHhhhccccc--eEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 391 TYIDYKRCEG--VAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 391 ~~~~~~~~~~--f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
+.++..+++. ....+...+..+.+....+. .+.+.++||-..
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~~ 120 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARK-----RECDLVVIGAQG 120 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHH-----TTCSEEEECSSC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHH-----hCCCEEEEeCCC
Confidence 5555555554 12334455888888888875 678999999865
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=50.21 E-value=60 Score=31.99 Aligned_cols=111 Identities=8% Similarity=0.007 Sum_probs=64.2
Q ss_pred hhHhhhHHHhhhCCCeeEEEEEEEeCCCcc-------chHH-HHHHHHHHHHHhhhccccceEEEEecCCHHHHHHHHHH
Q 005728 348 PKLADFANCMKKKGRGMSIFVSILDGDYHE-------CAED-AKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQ 419 (680)
Q Consensus 348 ~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~liq 419 (680)
...+++|..+.+....-+.++||...+... ..++ .++..+.++++.++.+++.....+...+..+.+....+
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~ 234 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQ 234 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHH
Confidence 456788888886544567788987643210 1111 12334466677776666543334455689999999888
Q ss_pred HcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHHH-hccceEEEEc
Q 005728 420 TMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDCI-VANKAVVIVK 469 (680)
Q Consensus 420 ~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~~-~~~~~v~i~r 469 (680)
. .+.+.|+||-...-. ..+-+. ++.+..+ ..++.|+++|
T Consensus 235 ~-----~~~dLiVmG~~g~~~------~~~~~~Gsv~~~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 235 K-----LDAVVTVIGTVARTG------LSGALIGNTAEVVLDTLESDVLVLK 275 (290)
T ss_dssp H-----HTCSEEEEECCSSCC------GGGCCSCHHHHHHHTTCSSEEEEEC
T ss_pred h-----cCCCEEEECCCCCcC------CcceecchHHHHHHhcCCCCEEEEC
Confidence 7 468999999754311 111111 2223333 4567888877
No 19
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=48.69 E-value=69 Score=28.57 Aligned_cols=96 Identities=7% Similarity=-0.009 Sum_probs=53.3
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEE--EEEeCCCc--c-----------chHHHHHHHHHHHHHh
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFV--SILDGDYH--E-----------CAEDAKTACKQLATYI 393 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~--~v~~~~~~--~-----------~~~~~~~~~~~~~~~~ 393 (680)
.|||.++.. +.....+++|..+.+ ...-+.++ ||++.+.. . ..++.++..+++.+.+
T Consensus 19 ~ILv~vD~s-------~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (163)
T 1tq8_A 19 TVVVGTDGS-------DSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA 90 (163)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHH
T ss_pred EEEEEcCCC-------HHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 488887531 123457799988886 44455666 76543210 0 0011222233344444
Q ss_pred hhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 394 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 394 ~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
+...++.....+...+..+.+....+. .+.+.|+||-..
T Consensus 91 ~~~gv~~v~~~v~~G~~~~~I~~~a~~-----~~~DLIV~G~~g 129 (163)
T 1tq8_A 91 HNAGAKNVEERPIVGAPVDALVNLADE-----EKADLLVVGNVG 129 (163)
T ss_dssp HTTTCCEEEEEEECSSHHHHHHHHHHH-----TTCSEEEEECCC
T ss_pred HHcCCCeEEEEEecCCHHHHHHHHHHh-----cCCCEEEECCCC
Confidence 444555222334456788888888775 679999999764
No 20
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=45.44 E-value=62 Score=27.63 Aligned_cols=122 Identities=8% Similarity=0.023 Sum_probs=68.7
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeC-C--Cccc----hHH-----HHHHHHHHHHHhhhc
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDG-D--YHEC----AED-----AKTACKQLATYIDYK 396 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~-~--~~~~----~~~-----~~~~~~~~~~~~~~~ 396 (680)
.+||.++.. +.....+++|..+.+....-+.++||... + +... .++ .++..+.++++.++.
T Consensus 4 ~ILv~~D~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (141)
T 1jmv_A 4 HILVAVDLS-------EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV 76 (141)
T ss_dssp EEEEEECCS-------TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS
T ss_pred eEEEEecCc-------hhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 478887531 12345678888887643345677888743 1 1100 000 012334555565555
Q ss_pred cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHH-hccceEEEEcC
Q 005728 397 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG 470 (680)
Q Consensus 397 ~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~-~~~~~v~i~r~ 470 (680)
+++.....+...+..+.+....+. .+.+.|+||-. .. .. ..+-.+.+.++ ..++.|+++|.
T Consensus 77 ~~~~~~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~-~~------~~-~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 77 DYPISEKLSGSGDLGQVLSDAIEQ-----YDVDLLVTGHH-QD------FW-SKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp SSCCCCEEEEEECHHHHHHHHHHH-----TTCCEEEEEEC-CC------CH-HHHHHHHHHHHTTCCSEEEEEEC
T ss_pred CCCceEEEEecCCHHHHHHHHHHh-----cCCCEEEEeCC-Cc------hh-hhhcchHHHHHhcCCCCEEEeeC
Confidence 555422344456788888888876 67899999965 21 11 22334444443 35677888764
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=43.43 E-value=2.5e+02 Score=27.58 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=66.6
Q ss_pred hhHhhhHHHhhhCC--CeeEEEEEEEeCCCcc--------c----hHH-HHHHHHHHHHHhhhccccceEEEEecCCHHH
Q 005728 348 PKLADFANCMKKKG--RGMSIFVSILDGDYHE--------C----AED-AKTACKQLATYIDYKRCEGVAEIVVAPNMSE 412 (680)
Q Consensus 348 ~~L~~fa~~l~k~~--~g~~~~~~v~~~~~~~--------~----~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 412 (680)
...+++|..+.+.. ..-+.++||....... . .++ .++..+.+++++++..+......+...+..+
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~ 256 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQ 256 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHH
Confidence 45678888877643 3456778887653211 0 111 1233456677777766654334455668888
Q ss_pred HHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHH-HHHHH-hccceEEEEcC
Q 005728 413 GFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGI-INDCI-VANKAVVIVKG 470 (680)
Q Consensus 413 g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~-i~~~~-~~~~~v~i~r~ 470 (680)
++....+. .+.+.|+||-... ....+-+.+- .+..+ ...+.|+++|.
T Consensus 257 ~I~~~a~~-----~~~dLiV~G~~g~------~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 257 VIPQVCEE-----LNAGIVVLGILGR------TGLSAAFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHHHH-----TTEEEEEEECCSC------CSTHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHH-----hCCCEEEEeccCc------cCCccccccHHHHHHHhhCCCCEEEECC
Confidence 99888886 6789999997542 1121223332 33333 45788999884
No 22
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=40.82 E-value=1.6e+02 Score=25.93 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=67.2
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCc-------------------cchHH----HHHH
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH-------------------ECAED----AKTA 385 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~-------------------~~~~~----~~~~ 385 (680)
.|||.++.. +.....+++|..+.+....-+.++||+..+.. +..++ .++.
T Consensus 7 ~ILv~vD~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T 2dum_A 7 KVLFPTDFS-------EGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRK 79 (170)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHH
T ss_pred eEEEEecCC-------HHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 478887531 12346789999998754456677888754311 00011 1112
Q ss_pred HHHHHHHhhhccccceE-EEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHHH-hcc
Q 005728 386 CKQLATYIDYKRCEGVA-EIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDCI-VAN 462 (680)
Q Consensus 386 ~~~~~~~~~~~~~~~f~-~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~~-~~~ 462 (680)
.+++.+.++..+++.-. ..+...+..+.+....+. .+.+.|+||-..... .. +.+. .+.+.++ ..+
T Consensus 80 l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~-----~~~DlIV~G~~g~~~---~~---~~~~Gsv~~~vl~~~~ 148 (170)
T 2dum_A 80 LQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEE-----ENVSLIILPSRGKLS---LS---HEFLGSTVMRVLRKTK 148 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHH-----TTCSEEEEESCCCCC--------TTCCCHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHH-----cCCCEEEECCCCCCc---cc---cceechHHHHHHHhCC
Confidence 22333333344444322 134455888888888875 678999999764311 10 1111 2223332 467
Q ss_pred ceEEEEcC
Q 005728 463 KAVVIVKG 470 (680)
Q Consensus 463 ~~v~i~r~ 470 (680)
+-|+++|.
T Consensus 149 ~PVlvv~~ 156 (170)
T 2dum_A 149 KPVLIIKE 156 (170)
T ss_dssp SCEEEECC
T ss_pred CCEEEEcc
Confidence 88999874
No 23
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=35.67 E-value=1.5e+02 Score=25.01 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=53.2
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCC---Ccc----ch-HH-HHHHHHHHHHHhhhccc-
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD---YHE----CA-ED-AKTACKQLATYIDYKRC- 398 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~---~~~----~~-~~-~~~~~~~~~~~~~~~~~- 398 (680)
.+||.++.. +.....+++|..+.+....-+.++||.... +.. .. ++ .++..+.++++.+..++
T Consensus 4 ~ILv~~D~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 76 (137)
T 2z08_A 4 TILLAYDGS-------EHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVP 76 (137)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCC
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 477777531 123357788888876433456778887532 110 00 01 11222334444333344
Q ss_pred cceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcc
Q 005728 399 EGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 437 (680)
Q Consensus 399 ~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~ 437 (680)
+.-.. +...+..+.+....+. .+.+.|+||-..
T Consensus 77 ~~~~~-~~~g~~~~~I~~~a~~-----~~~dliV~G~~~ 109 (137)
T 2z08_A 77 KEDAL-LLEGVPAEAILQAARA-----EKADLIVMGTRG 109 (137)
T ss_dssp GGGEE-EEESSHHHHHHHHHHH-----TTCSEEEEESSC
T ss_pred ccEEE-EEecCHHHHHHHHHHH-----cCCCEEEECCCC
Confidence 33223 3456888888888876 678999999865
No 24
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=35.66 E-value=4.5e+02 Score=28.39 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=28.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC
Q 005728 135 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP 177 (680)
Q Consensus 135 ~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP 177 (680)
..+.....++.++++.+.+|++.+.+.+.+-+ +++|=+-|
T Consensus 316 ~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~---~~~Diy~~ 355 (530)
T 3dh4_A 316 FLPVGVKGVVFAALAAAIVSSLASMLNSTATI---FTMDIYKE 355 (530)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTCCC
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHhHHHHH
Confidence 44444566778888888899888888887764 45665544
No 25
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.90 E-value=23 Score=21.16 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhcc
Q 005728 526 DAEVLKADVKKFLYDLR 542 (680)
Q Consensus 526 ~~~~~~~~l~~ll~~~R 542 (680)
+.+..+++++++.+++|
T Consensus 9 eledlqerlrklrkklr 25 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56778888888888887
No 26
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=33.86 E-value=2.3e+02 Score=24.48 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCC---------Cc--c----ch-----HHH-----H
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD---------YH--E----CA-----EDA-----K 383 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~---------~~--~----~~-----~~~-----~ 383 (680)
.+||.++.. +.....+++|..+.+....-+.++||+... +. . .. ++. +
T Consensus 7 ~ILv~vD~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T 1mjh_A 7 KILYPTDFS-------ETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTE 79 (162)
T ss_dssp EEEEECCSC-------HHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHH
Confidence 478877531 123457899999987544567778887532 10 0 10 011 1
Q ss_pred HHHHHHHH---HhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHH-HHHHHHH
Q 005728 384 TACKQLAT---YIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDCI 459 (680)
Q Consensus 384 ~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~-~~i~~~~ 459 (680)
+.++.+++ .++..+++.-.. +...+..+.+....+. .+.+.|+||-...- ... +.++ .+.+.++
T Consensus 80 ~~~~~l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~-----~~~dlIV~G~~g~~---~~~---~~~~GSv~~~vl 147 (162)
T 1mjh_A 80 EAKNKMENIKKELEDVGFKVKDI-IVVGIPHEEIVKIAED-----EGVDIIIMGSHGKT---NLK---EILLGSVTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHHH-----TTCSEEEEESCCSS---CCT---TCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCceEEE-EcCCCHHHHHHHHHHH-----cCCCEEEEcCCCCC---Ccc---ceEecchHHHHH
Confidence 11222333 233334443223 3445788888888876 67899999986431 111 1111 1223322
Q ss_pred -hccceEEEEcC
Q 005728 460 -VANKAVVIVKG 470 (680)
Q Consensus 460 -~~~~~v~i~r~ 470 (680)
..++.|++.|.
T Consensus 148 ~~~~~pVlvv~~ 159 (162)
T 1mjh_A 148 KKSNKPVLVVKR 159 (162)
T ss_dssp HHCCSCEEEECC
T ss_pred HhCCCCEEEEeC
Confidence 45788888874
No 27
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=31.11 E-value=4.7e+02 Score=28.75 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=26.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Q 005728 134 ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDI 175 (680)
Q Consensus 134 ~~~~~~~~~ii~ig~~~s~lss~~~~l~~~sR~l~amArDg~ 175 (680)
...+.+...++.++++.+.+|++.+.+.+.+-++ ++|=+
T Consensus 344 ~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~---~~Diy 382 (593)
T 2xq2_A 344 QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 382 (593)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTH
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3344444667778888888888888887777643 45543
No 28
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=28.86 E-value=1.4e+02 Score=29.16 Aligned_cols=117 Identities=11% Similarity=0.098 Sum_probs=69.1
Q ss_pred ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHHHhhhccccceEEEEecC
Q 005728 329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAP 408 (680)
Q Consensus 329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 408 (680)
.+|+.++. . +.....+++|..+.+....-+.++||...+. .++..+...+++++..++....+ ...
T Consensus 172 ~Ilv~~d~------s-~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~~~~~~~~~-~~g 237 (294)
T 3loq_A 172 RVLVAYDF------S-KWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAEGIEVHVHI-ESG 237 (294)
T ss_dssp EEEEECCS------S-HHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHTTCCEEEEE-ECS
T ss_pred EEEEEECC------C-HHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHcCCcEEEEE-ecC
Confidence 46766642 1 1234567888888754334567788876542 12233455666776777744433 455
Q ss_pred CHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHH-HHHHHH-hccceEEEEcC
Q 005728 409 NMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVG-IINDCI-VANKAVVIVKG 470 (680)
Q Consensus 409 ~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~-~i~~~~-~~~~~v~i~r~ 470 (680)
+..+++....+. .+.+.++||-...- ...+-+.+ +.++.+ ..++.|+++|.
T Consensus 238 ~~~~~I~~~a~~-----~~~dLlV~G~~~~~------~~~~~~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 238 TPHKAILAKREE-----INATTIFMGSRGAG------SVMTMILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp CHHHHHHHHHHH-----TTCSEEEEECCCCS------CHHHHHHHCHHHHHHHHCSSCEEEECS
T ss_pred CHHHHHHHHHHh-----cCcCEEEEeCCCCC------CccceeeCcHHHHHHhcCCCCEEEECC
Confidence 899999998886 56889999976431 11111222 223332 46788988875
No 29
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=20.24 E-value=30 Score=28.93 Aligned_cols=17 Identities=12% Similarity=0.690 Sum_probs=14.0
Q ss_pred cccEEEccCcchhcccc
Q 005728 427 KPNIVVMRYPEIWRREN 443 (680)
Q Consensus 427 ~PNtv~lg~~~~w~~~~ 443 (680)
|+..+.++||..|+..+
T Consensus 5 R~HV~~l~FP~ewKt~D 21 (101)
T 3ctr_A 5 SDHVLHVTFPKEWKTSD 21 (101)
T ss_dssp EEEEEEEECCTTCCHHH
T ss_pred CCeEEEEeCChhhhhHH
Confidence 67888899999998753
Done!