BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005729
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEA-EAVFEE 325
+ N V++G+A+ G + + L M + GL+P +YAA + + + E E+
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 326 LKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE-HTYSLLIDAYANAG 384
+ + GLK + LL + LK V LP +T LL D YA G
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 385 R 385
R
Sbjct: 287 R 287
>pdb|3CT4|A Chain A, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
pdb|3CT4|B Chain B, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
pdb|3CT4|C Chain C, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
Length = 332
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE------DVKRLLGNMRAQGLLPN 544
Y+ A EL +++E F Y I++N +G E DV +LL + L
Sbjct: 234 YELATELVGKLKEEFKFEAGQKYGILVNGMGATPLMEQFIFMNDVAKLLTEENIEILFKK 293
Query: 545 VVTYTTLVDIYGQS 558
V Y T +D+ G S
Sbjct: 294 VGNYMTSIDMAGLS 307
>pdb|1FEX|A Chain A, Solution Structure Of Myb-Domain Of Human Rap1
Length = 59
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 607 DAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636
DA+ A+L Y+KEN P VT L KA+
Sbjct: 7 DADDVAILTYVKENARSPSSVTGNALWKAM 36
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624
S L +N+LIN G AE F L K +GL P
Sbjct: 450 SGLTINTLINTVGIHPTTAEEFTRLAITKRSGLDP 484
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624
S L +N+LIN G AE F L K +GL P
Sbjct: 446 SGLTINTLINTVGIHPTTAEEFTRLAITKRSGLDP 480
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
pdb|3MDO|B Chain B, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
Length = 389
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 173 LGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYS 232
+G + + + + + + L P +ISA D L++++R+ G C
Sbjct: 96 VGAVDNILVSSTIGRNKLLVP---GEVISAIINGTD-----ELLAELREXGVGCYATGGE 147
Query: 233 LV-IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMA 291
+ L RT +DS++ + + D + G DVIVG A +G A+ + G
Sbjct: 148 TADVGDLVRTIIVDSTVTCRXKRSDVIDNKNIQG---GDVIVGLASSGQATYEKEYNGGX 204
Query: 292 QGVGLS 297
GL+
Sbjct: 205 GSNGLT 210
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 151 SWLQKHNLCYSYELLYSIL--IHALGRSEKLY-----EAFLLSQRQRLTPLTY---NALI 200
+ ++K Y YS+L + A+ RSE + E ++ Q +R+ + A++
Sbjct: 251 AGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV 310
Query: 201 SACARNDDLEKALNLMSKMRQD-GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECD 259
+ D ++K + M + ++ H F++Y+ ++ T K +L+ + K E
Sbjct: 311 IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370
Query: 260 KIELDGQLLNDVIV 273
+ + +LNDVI+
Sbjct: 371 SLRVQTNVLNDVIM 384
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-GRWESARIVLKEMEV 398
ALL GY + G+L A ER G P + + + Y A G E AR V +E E
Sbjct: 42 ALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAER 101
Query: 399 SHAKP--------NSFIYSRILA-GYRDRG 419
P +F+ +LA G+R RG
Sbjct: 102 RFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS--------------SGVEPDTHF 442
+V +A P + +YS L G ++ +WQ+ ++ + S +G + F
Sbjct: 193 DVLYALPTTLLYS--LEGLQEIVDWQKIMKLQSKDGSFLSSPASTAAVFMRTGNKKCLDF 250
Query: 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502
N ++ FG + H+ + F+R+ + DT+ ID HFK + + ++
Sbjct: 251 LNFVLKKFGNHVPCHYPLDLFERLWA----VDTVE-RLGIDRHFKEEIKEALDYVYSHWD 305
Query: 503 ERG 505
ERG
Sbjct: 306 ERG 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,518,033
Number of Sequences: 62578
Number of extensions: 679181
Number of successful extensions: 2025
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2006
Number of HSP's gapped (non-prelim): 22
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)