Query 005729
Match_columns 680
No_of_seqs 777 out of 3551
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 12:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.2E-72 2.7E-77 646.4 60.8 571 78-673 48-669 (857)
2 PLN03218 maturation of RBCL 1; 100.0 3E-71 6.4E-76 621.9 70.4 531 125-662 369-916 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 6.4E-67 1.4E-71 587.0 65.6 495 161-672 368-893 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.9E-66 4.2E-71 595.2 57.7 505 125-662 185-691 (857)
5 PLN03081 pentatricopeptide (PP 100.0 7.7E-62 1.7E-66 544.2 55.7 472 126-658 87-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6E-60 1.3E-64 529.0 54.6 511 79-627 85-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-28 5.4E-33 286.0 70.0 519 137-672 305-882 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-28 3.5E-33 287.6 66.5 498 138-653 374-898 (899)
9 PRK11447 cellulose synthase su 99.9 4.4E-20 9.5E-25 217.6 67.2 506 136-656 37-701 (1157)
10 PRK11447 cellulose synthase su 99.9 7.1E-19 1.5E-23 207.5 65.4 497 136-654 121-739 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.9E-20 6.3E-25 185.6 39.5 434 196-662 51-490 (966)
12 PRK09782 bacteriophage N4 rece 99.9 2.5E-17 5.5E-22 185.7 61.8 483 135-661 52-710 (987)
13 PRK11788 tetratricopeptide rep 99.9 6.2E-20 1.3E-24 193.0 36.8 304 309-661 44-353 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 8E-19 1.7E-23 175.5 37.9 432 139-636 60-500 (966)
15 PRK11788 tetratricopeptide rep 99.9 3E-19 6.5E-24 187.7 36.7 278 272-556 42-326 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-17 6E-22 182.2 50.3 406 231-656 130-572 (615)
17 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-16 5.6E-21 174.4 50.5 399 195-620 129-571 (615)
18 PRK15174 Vi polysaccharide exp 99.8 5E-16 1.1E-20 171.6 48.1 287 273-567 50-340 (656)
19 PRK09782 bacteriophage N4 rece 99.8 1.8E-14 3.8E-19 162.9 59.5 479 141-654 122-739 (987)
20 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.6E-20 168.6 47.7 332 196-539 45-381 (656)
21 PRK10049 pgaA outer membrane p 99.8 4.4E-15 9.6E-20 167.7 52.1 419 192-672 14-471 (765)
22 KOG2002 TPR-containing nuclear 99.8 2.2E-14 4.7E-19 151.8 49.4 494 142-658 251-801 (1018)
23 PRK14574 hmsH outer membrane p 99.8 1.7E-13 3.6E-18 151.9 56.3 443 200-669 41-525 (822)
24 PRK10049 pgaA outer membrane p 99.8 9.1E-15 2E-19 165.1 47.4 408 166-634 18-468 (765)
25 KOG4422 Uncharacterized conser 99.8 2E-14 4.3E-19 138.5 41.9 441 193-657 116-592 (625)
26 KOG2002 TPR-containing nuclear 99.8 2.2E-13 4.7E-18 144.4 50.1 454 188-663 265-751 (1018)
27 KOG4422 Uncharacterized conser 99.8 5.2E-14 1.1E-18 135.6 38.8 347 186-540 200-591 (625)
28 PRK14574 hmsH outer membrane p 99.7 1.3E-12 2.7E-17 145.0 55.1 429 138-627 45-518 (822)
29 KOG0495 HAT repeat protein [RN 99.7 1.6E-11 3.5E-16 124.7 53.8 400 259-671 473-895 (913)
30 KOG2003 TPR repeat-containing 99.7 3.1E-13 6.7E-18 131.0 34.5 435 195-640 203-708 (840)
31 KOG2076 RNA polymerase III tra 99.7 8.9E-11 1.9E-15 124.2 54.3 356 140-502 152-553 (895)
32 KOG0495 HAT repeat protein [RN 99.6 3.1E-10 6.7E-15 115.5 50.9 482 141-655 329-846 (913)
33 KOG2076 RNA polymerase III tra 99.6 1E-10 2.3E-15 123.6 47.5 476 170-655 146-695 (895)
34 KOG2003 TPR repeat-containing 99.6 2.8E-12 6.1E-17 124.5 32.0 428 168-618 206-720 (840)
35 KOG1155 Anaphase-promoting com 99.6 1.2E-10 2.5E-15 114.2 40.3 386 260-676 159-555 (559)
36 KOG1915 Cell cycle control pro 99.6 3.6E-09 7.9E-14 104.0 48.5 460 189-676 103-607 (677)
37 KOG1155 Anaphase-promoting com 99.5 3.2E-10 6.9E-15 111.2 39.5 361 187-567 158-529 (559)
38 PRK10747 putative protoheme IX 99.5 4.3E-11 9.3E-16 124.9 35.5 280 278-569 97-385 (398)
39 PRK10747 putative protoheme IX 99.5 8.2E-11 1.8E-15 122.7 36.7 253 381-654 129-389 (398)
40 KOG1915 Cell cycle control pro 99.5 5.6E-09 1.2E-13 102.7 45.8 441 189-655 69-536 (677)
41 TIGR00540 hemY_coli hemY prote 99.5 8.4E-11 1.8E-15 123.4 36.2 289 348-654 97-398 (409)
42 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.4E-18 137.8 13.2 262 270-538 13-276 (280)
43 TIGR00540 hemY_coli hemY prote 99.5 1E-10 2.3E-15 122.7 35.9 289 276-570 95-395 (409)
44 PF13429 TPR_15: Tetratricopep 99.5 2.3E-13 4.9E-18 135.6 12.9 261 375-654 13-276 (280)
45 KOG0547 Translocase of outer m 99.5 5.9E-10 1.3E-14 110.0 34.4 229 414-655 335-566 (606)
46 KOG1173 Anaphase-promoting com 99.5 2.5E-09 5.5E-14 107.7 39.1 498 142-675 31-537 (611)
47 COG2956 Predicted N-acetylgluc 99.5 7.4E-10 1.6E-14 103.9 32.4 275 277-558 47-328 (389)
48 COG2956 Predicted N-acetylgluc 99.4 8.3E-10 1.8E-14 103.6 31.2 289 313-653 48-345 (389)
49 KOG0547 Translocase of outer m 99.4 1.2E-09 2.5E-14 108.0 33.0 404 137-573 125-565 (606)
50 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.5E-14 104.2 33.9 294 313-655 97-390 (400)
51 KOG1126 DNA-binding cell divis 99.4 1E-10 2.3E-15 120.0 24.7 202 439-658 420-623 (638)
52 COG3071 HemY Uncharacterized e 99.4 3.2E-09 7E-14 102.9 33.2 282 278-569 97-385 (400)
53 KOG2047 mRNA splicing factor [ 99.4 4.9E-07 1.1E-11 92.7 49.9 457 195-669 104-663 (835)
54 KOG4318 Bicoid mRNA stability 99.3 1.5E-09 3.2E-14 114.5 30.0 273 214-525 11-286 (1088)
55 KOG1126 DNA-binding cell divis 99.3 7.2E-10 1.6E-14 113.9 26.7 264 266-539 354-620 (638)
56 KOG4318 Bicoid mRNA stability 99.3 5.1E-09 1.1E-13 110.5 32.4 64 592-655 492-557 (1088)
57 KOG1174 Anaphase-promoting com 99.3 1.7E-07 3.8E-12 91.0 37.2 249 401-661 228-504 (564)
58 KOG1156 N-terminal acetyltrans 99.3 5E-07 1.1E-11 92.9 41.2 434 194-657 9-470 (700)
59 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-11 3.4E-16 85.9 6.4 50 191-240 1-50 (50)
60 KOG1840 Kinesin light chain [C 99.2 9.8E-09 2.1E-13 106.8 28.7 244 406-653 200-477 (508)
61 TIGR02521 type_IV_pilW type IV 99.2 1.3E-08 2.8E-13 98.3 27.9 61 266-327 32-92 (234)
62 KOG1156 N-terminal acetyltrans 99.2 1.1E-06 2.3E-11 90.6 41.3 454 139-617 19-508 (700)
63 TIGR02521 type_IV_pilW type IV 99.2 1.7E-08 3.7E-13 97.5 28.0 199 301-537 32-230 (234)
64 PRK12370 invasion protein regu 99.2 1.2E-08 2.6E-13 111.4 29.3 216 280-503 276-501 (553)
65 PRK12370 invasion protein regu 99.2 2.9E-08 6.2E-13 108.4 32.0 234 299-539 255-502 (553)
66 PF13041 PPR_2: PPR repeat fam 99.2 4.9E-11 1.1E-15 83.3 6.4 49 298-346 1-49 (50)
67 KOG2376 Signal recognition par 99.2 2.1E-06 4.6E-11 87.5 40.9 449 169-652 18-517 (652)
68 KOG2047 mRNA splicing factor [ 99.2 1.2E-05 2.5E-10 82.9 51.2 500 140-653 115-717 (835)
69 PF12569 NARP1: NMDA receptor- 99.2 1E-06 2.3E-11 93.1 40.1 68 170-239 11-82 (517)
70 PF12569 NARP1: NMDA receptor- 99.2 9.1E-07 2E-11 93.5 39.4 298 273-585 12-341 (517)
71 KOG1840 Kinesin light chain [C 99.1 5.4E-08 1.2E-12 101.3 29.2 242 370-618 199-477 (508)
72 KOG1129 TPR repeat-containing 99.1 1.4E-08 3E-13 95.4 21.9 229 304-538 227-457 (478)
73 KOG3785 Uncharacterized conser 99.1 6.5E-06 1.4E-10 78.7 39.3 445 139-630 34-498 (557)
74 KOG1173 Anaphase-promoting com 99.1 4.8E-07 1E-11 91.7 33.6 287 296-601 240-532 (611)
75 KOG1129 TPR repeat-containing 99.1 1.1E-08 2.5E-13 96.0 20.2 233 408-660 226-461 (478)
76 KOG1174 Anaphase-promoting com 99.1 6.3E-06 1.4E-10 80.4 38.2 292 313-626 209-504 (564)
77 KOG4162 Predicted calmodulin-b 99.1 8.3E-06 1.8E-10 85.9 41.3 387 260-655 318-783 (799)
78 KOG3617 WD40 and TPR repeat-co 99.0 6.8E-05 1.5E-09 79.4 45.2 467 140-662 741-1366(1416)
79 KOG3616 Selective LIM binding 99.0 5.1E-06 1.1E-10 86.4 35.1 194 342-569 739-932 (1636)
80 PRK11189 lipoprotein NlpI; Pro 99.0 7.4E-07 1.6E-11 89.0 27.7 232 384-631 40-275 (296)
81 KOG4162 Predicted calmodulin-b 98.9 3.9E-05 8.3E-10 81.1 40.0 408 189-619 319-782 (799)
82 KOG0624 dsRNA-activated protei 98.9 2.5E-05 5.5E-10 74.5 34.7 338 306-677 44-391 (504)
83 PRK11189 lipoprotein NlpI; Pro 98.9 1.1E-06 2.4E-11 87.8 27.7 193 338-539 67-265 (296)
84 KOG3785 Uncharacterized conser 98.9 9.2E-06 2E-10 77.7 30.8 374 269-675 61-475 (557)
85 KOG3617 WD40 and TPR repeat-co 98.9 5.7E-05 1.2E-09 79.9 38.7 181 139-362 812-994 (1416)
86 cd05804 StaR_like StaR_like; a 98.9 2.2E-05 4.7E-10 81.4 36.0 299 267-569 8-331 (355)
87 cd05804 StaR_like StaR_like; a 98.9 1.4E-05 3.1E-10 82.7 34.5 312 300-619 6-335 (355)
88 COG3063 PilF Tfp pilus assembl 98.9 2E-06 4.3E-11 77.8 23.5 191 446-652 41-233 (250)
89 KOG4340 Uncharacterized conser 98.9 6.4E-06 1.4E-10 76.9 27.5 292 267-570 46-371 (459)
90 COG3063 PilF Tfp pilus assembl 98.8 2.2E-06 4.9E-11 77.4 23.3 184 377-564 42-226 (250)
91 KOG1125 TPR repeat-containing 98.8 2.6E-07 5.6E-12 94.0 19.1 241 416-676 296-557 (579)
92 KOG0548 Molecular co-chaperone 98.8 7.8E-05 1.7E-09 75.8 35.2 382 139-539 14-455 (539)
93 KOG3616 Selective LIM binding 98.8 3.1E-05 6.7E-10 80.7 32.5 228 269-533 619-847 (1636)
94 PRK04841 transcriptional regul 98.8 8.9E-05 1.9E-09 87.2 40.7 374 269-656 345-761 (903)
95 KOG1127 TPR repeat-containing 98.8 0.00037 8E-09 75.8 40.1 493 141-647 472-1028(1238)
96 PRK04841 transcriptional regul 98.8 0.00011 2.5E-09 86.3 40.9 339 275-620 384-760 (903)
97 KOG0548 Molecular co-chaperone 98.7 9.5E-05 2.1E-09 75.2 33.7 398 200-633 9-466 (539)
98 KOG2376 Signal recognition par 98.7 0.0003 6.5E-09 72.3 37.1 375 174-567 90-513 (652)
99 KOG0624 dsRNA-activated protei 98.7 0.00025 5.4E-09 67.9 33.9 315 263-619 36-369 (504)
100 KOG0985 Vesicle coat protein c 98.7 0.0001 2.2E-09 79.8 34.7 401 199-675 844-1263(1666)
101 KOG0985 Vesicle coat protein c 98.7 0.0004 8.6E-09 75.4 37.4 341 140-534 851-1218(1666)
102 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.1E-11 85.7 17.2 112 310-431 112-227 (290)
103 PF04733 Coatomer_E: Coatomer 98.6 4.1E-06 8.9E-11 82.5 19.7 117 440-561 131-251 (290)
104 KOG4340 Uncharacterized conser 98.6 9E-05 2E-09 69.5 26.5 285 166-465 13-335 (459)
105 KOG1125 TPR repeat-containing 98.6 7.5E-06 1.6E-10 83.6 21.2 257 345-612 295-563 (579)
106 KOG1127 TPR repeat-containing 98.6 0.00088 1.9E-08 73.0 37.3 145 142-292 507-657 (1238)
107 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 2.9E-12 59.1 4.0 31 296-326 3-33 (34)
108 KOG1070 rRNA processing protei 98.5 5.7E-05 1.2E-09 84.5 26.7 227 402-643 1455-1688(1710)
109 KOG1914 mRNA cleavage and poly 98.5 0.002 4.4E-08 65.7 40.8 411 152-569 11-496 (656)
110 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.9E-12 58.6 4.0 32 586-617 2-33 (34)
111 KOG1070 rRNA processing protei 98.5 0.00012 2.6E-09 82.1 27.9 202 300-508 1458-1667(1710)
112 KOG1914 mRNA cleavage and poly 98.5 0.0028 6.1E-08 64.7 43.2 418 183-619 10-500 (656)
113 PLN02789 farnesyltranstransfer 98.5 0.00028 6.1E-09 70.6 27.9 203 314-522 51-267 (320)
114 KOG1128 Uncharacterized conser 98.4 5.5E-05 1.2E-09 79.5 22.9 220 367-619 395-615 (777)
115 PLN02789 farnesyltranstransfer 98.4 0.00042 9E-09 69.3 28.5 213 268-487 40-267 (320)
116 KOG1128 Uncharacterized conser 98.4 2.6E-05 5.7E-10 81.8 20.3 239 298-557 396-635 (777)
117 KOG2053 Mitochondrial inherita 98.4 0.0062 1.3E-07 66.1 45.6 216 140-366 22-257 (932)
118 KOG3081 Vesicle coat complex C 98.4 0.00058 1.2E-08 63.5 25.1 119 306-434 114-236 (299)
119 TIGR03302 OM_YfiO outer membra 98.3 0.00013 2.7E-09 70.6 21.0 186 263-469 31-232 (235)
120 PRK14720 transcript cleavage f 98.3 0.00031 6.8E-09 78.2 26.1 220 263-521 29-268 (906)
121 PRK14720 transcript cleavage f 98.3 0.00081 1.7E-08 75.1 29.1 82 441-539 117-198 (906)
122 TIGR03302 OM_YfiO outer membra 98.3 0.00014 3E-09 70.3 20.8 65 299-364 32-99 (235)
123 PRK10370 formate-dependent nit 98.2 0.00026 5.7E-09 65.8 20.9 120 383-505 52-174 (198)
124 PRK10370 formate-dependent nit 98.2 0.00029 6.3E-09 65.5 20.6 154 377-546 23-179 (198)
125 KOG3081 Vesicle coat complex C 98.2 0.0034 7.3E-08 58.5 25.7 144 411-565 114-261 (299)
126 KOG2053 Mitochondrial inherita 98.2 0.019 4.1E-07 62.5 47.7 224 203-435 19-256 (932)
127 COG5010 TadD Flp pilus assembl 98.2 0.00057 1.2E-08 63.6 20.7 159 374-536 70-228 (257)
128 PRK15179 Vi polysaccharide bio 98.2 0.0011 2.4E-08 73.3 26.6 219 187-433 22-244 (694)
129 COG4783 Putative Zn-dependent 98.1 0.00096 2.1E-08 67.5 23.1 146 450-629 316-462 (484)
130 PRK15179 Vi polysaccharide bio 98.1 0.0015 3.3E-08 72.2 26.6 235 230-488 30-268 (694)
131 TIGR00756 PPR pentatricopeptid 98.1 5.6E-06 1.2E-10 52.6 4.4 34 195-228 2-35 (35)
132 COG5010 TadD Flp pilus assembl 98.1 0.0013 2.7E-08 61.3 21.0 157 409-569 70-226 (257)
133 PRK15359 type III secretion sy 98.0 0.0003 6.4E-09 61.8 15.6 89 413-503 32-120 (144)
134 PRK15359 type III secretion sy 98.0 0.00074 1.6E-08 59.3 17.4 93 340-434 29-121 (144)
135 KOG3060 Uncharacterized conser 98.0 0.0084 1.8E-07 55.6 23.7 187 279-469 26-220 (289)
136 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 50.5 4.1 33 194-226 2-34 (34)
137 TIGR02552 LcrH_SycD type III s 97.9 0.00045 9.8E-09 60.1 15.3 97 441-539 18-114 (135)
138 COG4783 Putative Zn-dependent 97.9 0.0046 9.9E-08 62.7 23.5 139 344-504 315-454 (484)
139 KOG3060 Uncharacterized conser 97.9 0.012 2.7E-07 54.5 23.8 186 350-539 27-220 (289)
140 TIGR00756 PPR pentatricopeptid 97.9 2.6E-05 5.6E-10 49.5 4.5 33 593-625 2-34 (35)
141 PF13812 PPR_3: Pentatricopept 97.8 4.2E-05 9.1E-10 48.1 4.5 33 592-624 2-34 (34)
142 TIGR02552 LcrH_SycD type III s 97.8 0.0013 2.9E-08 57.1 15.4 95 408-504 20-114 (135)
143 PF01535 PPR: PPR repeat; Int 97.7 3.1E-05 6.6E-10 47.5 3.1 31 194-224 1-31 (31)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.002 4.3E-08 65.9 16.2 83 310-397 179-261 (395)
145 PF09976 TPR_21: Tetratricopep 97.6 0.0031 6.6E-08 55.6 15.6 113 278-394 24-142 (145)
146 PF09976 TPR_21: Tetratricopep 97.6 0.0035 7.5E-08 55.2 15.5 21 378-398 56-76 (145)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0025 5.5E-08 65.1 16.1 121 375-501 174-294 (395)
148 KOG0550 Molecular chaperone (D 97.6 0.011 2.5E-07 58.5 19.1 297 341-679 55-372 (486)
149 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.3E-08 52.5 10.7 88 195-311 27-115 (120)
150 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.2E-08 52.5 10.4 76 306-381 31-115 (120)
151 PF10037 MRP-S27: Mitochondria 97.5 0.0019 4E-08 66.4 13.8 123 401-523 62-186 (429)
152 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.8E-09 44.7 3.2 30 593-622 2-31 (31)
153 PF10037 MRP-S27: Mitochondria 97.4 0.0022 4.7E-08 65.9 13.4 125 364-488 60-186 (429)
154 cd00189 TPR Tetratricopeptide 97.4 0.0035 7.6E-08 49.8 11.9 89 447-537 7-95 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0089 1.9E-07 50.3 14.3 22 376-397 45-66 (119)
156 PF06239 ECSIT: Evolutionarily 97.3 0.0044 9.5E-08 56.4 12.5 50 298-347 45-99 (228)
157 PF06239 ECSIT: Evolutionarily 97.3 0.0061 1.3E-07 55.5 13.2 95 507-603 44-150 (228)
158 cd00189 TPR Tetratricopeptide 97.3 0.0045 9.7E-08 49.2 11.6 91 411-503 6-96 (100)
159 KOG2041 WD40 repeat protein [G 97.3 0.35 7.6E-06 51.4 29.2 186 279-503 748-951 (1189)
160 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.011 2.4E-07 49.7 14.1 27 478-504 79-105 (119)
161 PF14938 SNAP: Soluble NSF att 97.3 0.073 1.6E-06 52.8 21.7 27 195-221 37-63 (282)
162 PF05843 Suf: Suppressor of fo 97.2 0.0089 1.9E-07 59.1 14.6 130 407-539 3-136 (280)
163 KOG0553 TPR repeat-containing 97.2 0.0053 1.1E-07 58.5 11.9 80 485-567 91-171 (304)
164 CHL00033 ycf3 photosystem I as 97.1 0.017 3.6E-07 52.3 14.6 105 475-584 35-148 (168)
165 PF07079 DUF1347: Protein of u 97.1 0.37 8E-06 48.9 44.6 372 276-665 90-529 (549)
166 PF05843 Suf: Suppressor of fo 97.1 0.017 3.6E-07 57.1 15.4 96 442-539 3-99 (280)
167 PRK15363 pathogenicity island 97.1 0.025 5.4E-07 49.2 14.3 89 479-569 39-127 (157)
168 PRK02603 photosystem I assembl 97.1 0.033 7.2E-07 50.6 16.2 91 264-355 34-126 (172)
169 PRK02603 photosystem I assembl 97.1 0.032 7E-07 50.7 16.0 90 475-565 35-126 (172)
170 KOG0550 Molecular chaperone (D 97.1 0.15 3.3E-06 50.9 20.8 276 305-620 54-350 (486)
171 PRK10153 DNA-binding transcrip 97.1 0.035 7.5E-07 59.7 18.3 71 544-629 419-489 (517)
172 KOG2041 WD40 repeat protein [G 97.1 0.5 1.1E-05 50.3 25.5 187 206-433 747-951 (1189)
173 PRK10153 DNA-binding transcrip 97.1 0.039 8.5E-07 59.3 18.4 73 589-665 418-490 (517)
174 PLN03088 SGT1, suppressor of 97.1 0.018 3.9E-07 59.1 15.4 93 411-505 8-100 (356)
175 PLN03088 SGT1, suppressor of 97.0 0.019 4.1E-07 59.0 15.4 93 376-470 8-100 (356)
176 PF14938 SNAP: Soluble NSF att 97.0 0.018 3.9E-07 57.1 14.4 119 547-673 116-247 (282)
177 PF12895 Apc3: Anaphase-promot 97.0 0.0016 3.4E-08 51.1 5.6 20 481-500 31-50 (84)
178 PRK10866 outer membrane biogen 97.0 0.2 4.3E-06 48.2 21.0 58 480-537 180-239 (243)
179 KOG1130 Predicted G-alpha GTPa 97.0 0.0088 1.9E-07 59.1 11.5 139 511-655 196-344 (639)
180 PF03704 BTAD: Bacterial trans 97.0 0.038 8.2E-07 48.7 14.7 75 593-669 64-144 (146)
181 CHL00033 ycf3 photosystem I as 96.9 0.018 4E-07 52.1 12.9 94 441-535 36-138 (168)
182 PF12895 Apc3: Anaphase-promot 96.9 0.0021 4.5E-08 50.5 5.7 20 376-395 31-50 (84)
183 COG4700 Uncharacterized protei 96.9 0.25 5.4E-06 43.8 18.4 135 507-653 86-220 (251)
184 PRK15363 pathogenicity island 96.9 0.068 1.5E-06 46.6 15.0 96 442-539 37-132 (157)
185 KOG1130 Predicted G-alpha GTPa 96.9 0.03 6.4E-07 55.5 14.1 135 478-618 198-342 (639)
186 PRK10866 outer membrane biogen 96.7 0.34 7.4E-06 46.6 20.5 54 515-568 180-235 (243)
187 KOG0553 TPR repeat-containing 96.7 0.022 4.8E-07 54.4 11.2 93 452-548 93-185 (304)
188 PF04840 Vps16_C: Vps16, C-ter 96.7 0.85 1.8E-05 45.7 29.4 105 443-567 180-284 (319)
189 KOG1538 Uncharacterized conser 96.7 0.17 3.6E-06 53.3 18.1 53 442-503 749-801 (1081)
190 KOG1538 Uncharacterized conser 96.6 0.21 4.6E-06 52.6 18.8 93 298-395 554-657 (1081)
191 PF12688 TPR_5: Tetratrico pep 96.6 0.13 2.8E-06 43.1 14.5 88 273-362 9-102 (120)
192 PF14559 TPR_19: Tetratricopep 96.6 0.0067 1.5E-07 45.2 6.0 63 602-667 2-64 (68)
193 PF13281 DUF4071: Domain of un 96.5 0.61 1.3E-05 47.3 20.9 191 480-676 146-353 (374)
194 KOG2280 Vacuolar assembly/sort 96.5 1.7 3.6E-05 47.2 25.6 334 197-568 441-793 (829)
195 KOG2796 Uncharacterized conser 96.5 0.39 8.5E-06 45.0 17.7 131 303-434 180-315 (366)
196 PF04840 Vps16_C: Vps16, C-ter 96.5 1.1 2.4E-05 44.9 27.8 109 372-500 179-287 (319)
197 PF13432 TPR_16: Tetratricopep 96.4 0.0093 2E-07 43.9 6.0 61 597-660 3-63 (65)
198 PF12688 TPR_5: Tetratrico pep 96.4 0.19 4.2E-06 42.0 14.3 87 482-568 8-98 (120)
199 PF13414 TPR_11: TPR repeat; P 96.4 0.011 2.3E-07 44.2 6.2 64 590-655 2-67 (69)
200 PF09205 DUF1955: Domain of un 96.4 0.35 7.5E-06 40.3 14.9 147 487-676 14-160 (161)
201 PF13414 TPR_11: TPR repeat; P 96.4 0.017 3.7E-07 43.1 7.2 63 475-538 3-66 (69)
202 PF14559 TPR_19: Tetratricopep 96.3 0.014 2.9E-07 43.5 6.4 51 487-538 3-53 (68)
203 PF13371 TPR_9: Tetratricopept 96.3 0.019 4.1E-07 43.4 7.2 69 598-669 2-70 (73)
204 COG4700 Uncharacterized protei 96.3 0.73 1.6E-05 41.0 19.1 129 437-569 86-217 (251)
205 PF13432 TPR_16: Tetratricopep 96.3 0.019 4.2E-07 42.2 6.9 55 483-538 5-59 (65)
206 COG4235 Cytochrome c biogenesi 96.1 0.26 5.6E-06 47.5 15.1 47 507-554 153-199 (287)
207 KOG2796 Uncharacterized conser 96.1 1.3 2.8E-05 41.8 25.3 64 336-399 178-241 (366)
208 PF13525 YfiO: Outer membrane 96.1 1 2.2E-05 42.1 19.1 57 273-329 13-71 (203)
209 PRK10803 tol-pal system protei 96.0 0.13 2.8E-06 50.0 12.9 102 546-664 144-253 (263)
210 PF13281 DUF4071: Domain of un 96.0 2.2 4.7E-05 43.4 23.9 128 488-620 195-334 (374)
211 PF13424 TPR_12: Tetratricopep 96.0 0.023 4.9E-07 43.7 6.2 69 545-619 5-74 (78)
212 COG4235 Cytochrome c biogenesi 96.0 0.42 9E-06 46.2 15.7 101 437-539 153-256 (287)
213 PF13525 YfiO: Outer membrane 95.9 0.76 1.6E-05 43.0 17.4 49 516-564 147-197 (203)
214 PRK10803 tol-pal system protei 95.6 0.26 5.6E-06 47.9 13.3 14 384-397 157-170 (263)
215 PF03704 BTAD: Bacterial trans 95.6 0.088 1.9E-06 46.3 9.2 70 477-547 64-138 (146)
216 KOG2066 Vacuolar assembly/sort 95.5 4.8 0.0001 44.1 29.3 99 170-277 363-467 (846)
217 PRK15331 chaperone protein Sic 95.4 0.84 1.8E-05 40.1 14.2 84 484-569 46-129 (165)
218 PF13371 TPR_9: Tetratricopept 95.4 0.12 2.5E-06 39.0 8.1 54 484-538 4-57 (73)
219 PF13424 TPR_12: Tetratricopep 95.4 0.042 9.1E-07 42.2 5.6 63 592-654 6-74 (78)
220 PF07079 DUF1347: Protein of u 95.2 4.3 9.4E-05 41.6 43.5 442 140-633 19-532 (549)
221 PF13170 DUF4003: Protein of u 95.1 3.9 8.4E-05 40.6 21.1 135 492-635 79-226 (297)
222 COG3898 Uncharacterized membra 95.1 4.1 9E-05 40.8 32.0 291 303-621 85-393 (531)
223 KOG3941 Intermediate in Toll s 95.1 0.53 1.1E-05 44.7 12.5 57 188-244 62-123 (406)
224 PF04053 Coatomer_WDAD: Coatom 95.0 0.97 2.1E-05 47.6 16.0 156 308-499 269-426 (443)
225 PF12921 ATP13: Mitochondrial 94.9 0.16 3.5E-06 42.9 8.3 54 586-639 47-101 (126)
226 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.34 7.5E-06 49.8 11.9 66 262-329 72-141 (453)
227 KOG0543 FKBP-type peptidyl-pro 94.7 0.38 8.1E-06 48.3 11.4 79 591-672 257-335 (397)
228 KOG1585 Protein required for f 94.7 3.7 8E-05 38.5 18.2 87 266-362 32-118 (308)
229 KOG0543 FKBP-type peptidyl-pro 94.7 2.1 4.6E-05 43.2 16.4 138 200-363 215-354 (397)
230 KOG3941 Intermediate in Toll s 94.6 0.27 5.9E-06 46.5 9.5 51 297-347 64-119 (406)
231 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.68 1.5E-05 47.7 13.1 66 437-504 72-141 (453)
232 smart00299 CLH Clathrin heavy 94.6 2.7 5.8E-05 36.4 15.6 40 307-347 14-53 (140)
233 PF12921 ATP13: Mitochondrial 94.6 0.67 1.5E-05 39.2 11.1 56 505-560 47-103 (126)
234 PRK15331 chaperone protein Sic 94.5 2.9 6.3E-05 36.8 15.0 89 378-468 45-133 (165)
235 KOG2114 Vacuolar assembly/sort 94.5 9.7 0.00021 42.2 28.4 177 166-362 337-517 (933)
236 COG5107 RNA14 Pre-mRNA 3'-end 94.4 6.8 0.00015 40.1 40.0 139 510-665 397-539 (660)
237 KOG1941 Acetylcholine receptor 94.3 1.8 3.8E-05 42.8 14.4 173 477-653 85-273 (518)
238 KOG2280 Vacuolar assembly/sort 94.3 10 0.00022 41.5 30.0 107 512-648 686-792 (829)
239 PF10300 DUF3808: Protein of u 94.2 2.5 5.4E-05 45.2 17.0 161 374-537 192-374 (468)
240 smart00299 CLH Clathrin heavy 94.2 3.2 6.9E-05 36.0 15.1 84 445-536 12-95 (140)
241 PF10300 DUF3808: Protein of u 94.0 6 0.00013 42.4 19.6 164 480-654 193-375 (468)
242 COG5107 RNA14 Pre-mRNA 3'-end 93.9 8.5 0.00018 39.4 37.3 438 160-636 39-545 (660)
243 PRK11906 transcriptional regul 93.9 5.2 0.00011 41.5 17.7 109 526-651 320-432 (458)
244 PF09205 DUF1955: Domain of un 93.8 3.6 7.8E-05 34.5 15.0 138 277-436 14-151 (161)
245 PF04097 Nic96: Nup93/Nic96; 93.8 13 0.00028 41.3 22.2 168 411-583 264-454 (613)
246 PF06552 TOM20_plant: Plant sp 93.6 1.4 3E-05 39.3 11.3 120 526-660 7-141 (186)
247 KOG2114 Vacuolar assembly/sort 93.4 15 0.00033 40.7 22.5 141 272-431 375-516 (933)
248 COG3629 DnrI DNA-binding trans 93.3 0.91 2E-05 44.0 10.6 79 592-672 154-238 (280)
249 KOG2610 Uncharacterized conser 93.1 7.5 0.00016 38.2 16.2 117 382-500 115-234 (491)
250 COG3898 Uncharacterized membra 93.0 11 0.00024 38.0 34.0 302 336-660 83-397 (531)
251 PF04053 Coatomer_WDAD: Coatom 93.0 1.8 3.9E-05 45.6 13.3 130 268-430 298-427 (443)
252 KOG1585 Protein required for f 93.0 8.1 0.00018 36.3 18.1 85 195-291 33-117 (308)
253 KOG4555 TPR repeat-containing 92.8 4.1 8.8E-05 34.1 12.0 91 274-365 52-145 (175)
254 COG4105 ComL DNA uptake lipopr 92.7 9.3 0.0002 36.3 20.6 167 486-654 45-232 (254)
255 COG0457 NrfG FOG: TPR repeat [ 92.6 8.8 0.00019 35.7 31.2 203 335-539 59-265 (291)
256 KOG2610 Uncharacterized conser 92.4 3.2 6.8E-05 40.7 12.7 151 277-430 115-272 (491)
257 KOG1941 Acetylcholine receptor 92.1 14 0.0003 36.8 20.2 162 408-569 86-270 (518)
258 COG1747 Uncharacterized N-term 91.9 18 0.0004 37.8 22.5 96 438-538 64-159 (711)
259 PRK11906 transcriptional regul 91.9 13 0.00029 38.6 17.3 109 455-568 319-430 (458)
260 PF13170 DUF4003: Protein of u 91.9 14 0.00031 36.6 20.5 21 285-305 82-102 (297)
261 KOG4555 TPR repeat-containing 91.9 6.6 0.00014 32.9 12.2 91 309-400 52-145 (175)
262 COG3118 Thioredoxin domain-con 91.6 14 0.0003 35.9 18.7 140 417-560 146-287 (304)
263 COG1729 Uncharacterized protei 91.6 4 8.7E-05 39.1 12.5 104 547-666 144-253 (262)
264 COG0457 NrfG FOG: TPR repeat [ 91.6 11 0.00025 34.9 30.5 224 278-505 36-266 (291)
265 COG3629 DnrI DNA-binding trans 91.6 2.1 4.5E-05 41.6 10.7 78 476-554 154-236 (280)
266 COG3118 Thioredoxin domain-con 91.6 14 0.00031 35.9 17.9 52 310-362 144-195 (304)
267 KOG1586 Protein required for f 91.5 9.6 0.00021 35.6 14.0 96 556-657 84-185 (288)
268 PF13428 TPR_14: Tetratricopep 91.3 0.62 1.3E-05 30.9 5.0 38 593-632 3-41 (44)
269 PF08631 SPO22: Meiosis protei 91.0 17 0.00038 35.8 26.0 102 441-545 85-192 (278)
270 PF13176 TPR_7: Tetratricopept 90.7 0.59 1.3E-05 29.4 4.2 27 195-221 1-27 (36)
271 COG4105 ComL DNA uptake lipopr 90.4 17 0.00036 34.7 21.3 186 333-538 33-232 (254)
272 PF07035 Mic1: Colon cancer-as 90.2 13 0.00028 33.1 14.6 56 338-397 92-147 (167)
273 PF13512 TPR_18: Tetratricopep 90.1 11 0.00025 32.4 12.8 74 484-557 19-94 (142)
274 PF13428 TPR_14: Tetratricopep 90.1 1.2 2.7E-05 29.4 5.6 27 478-504 4-30 (44)
275 PF08631 SPO22: Meiosis protei 89.7 22 0.00048 35.0 26.7 160 407-569 86-270 (278)
276 KOG1920 IkappaB kinase complex 89.6 47 0.001 38.7 22.6 80 376-467 945-1026(1265)
277 PF10602 RPN7: 26S proteasome 89.6 5.4 0.00012 36.2 11.2 63 266-328 37-101 (177)
278 PF13512 TPR_18: Tetratricopep 89.5 11 0.00023 32.5 12.0 55 346-400 21-77 (142)
279 COG1729 Uncharacterized protei 89.4 5.8 0.00013 38.0 11.4 86 454-539 155-244 (262)
280 PF13176 TPR_7: Tetratricopept 89.3 0.87 1.9E-05 28.6 4.2 25 594-618 2-26 (36)
281 PF04184 ST7: ST7 protein; In 89.1 32 0.0007 36.1 18.0 60 339-398 263-323 (539)
282 COG4649 Uncharacterized protei 89.0 16 0.00035 32.5 14.2 123 276-398 69-195 (221)
283 PF04184 ST7: ST7 protein; In 89.0 33 0.00071 36.1 17.6 59 409-467 263-322 (539)
284 PF06552 TOM20_plant: Plant sp 88.9 11 0.00024 33.8 12.0 81 528-622 53-138 (186)
285 KOG1550 Extracellular protein 88.9 41 0.00089 37.0 25.7 116 420-541 308-428 (552)
286 PF13431 TPR_17: Tetratricopep 88.5 0.41 8.9E-06 29.7 2.2 23 160-182 10-32 (34)
287 PF00515 TPR_1: Tetratricopept 88.3 1.2 2.6E-05 27.4 4.3 31 593-625 3-33 (34)
288 COG2909 MalT ATP-dependent tra 88.2 51 0.0011 37.3 22.2 200 451-659 426-651 (894)
289 PRK11619 lytic murein transgly 88.2 49 0.0011 37.0 38.5 273 148-432 84-373 (644)
290 PF10602 RPN7: 26S proteasome 88.1 7.5 0.00016 35.3 11.0 61 337-397 38-100 (177)
291 KOG1920 IkappaB kinase complex 88.0 61 0.0013 37.9 23.6 75 482-567 972-1048(1265)
292 PRK09687 putative lyase; Provi 87.8 30 0.00065 34.1 27.8 203 438-672 66-278 (280)
293 KOG1586 Protein required for f 87.4 25 0.00055 32.9 14.5 22 602-623 165-186 (288)
294 KOG0403 Neoplastic transformat 87.4 38 0.00082 34.9 27.7 64 594-658 512-575 (645)
295 COG2976 Uncharacterized protei 87.1 23 0.00051 32.2 13.1 59 596-656 131-189 (207)
296 PF13929 mRNA_stabil: mRNA sta 86.0 20 0.00044 34.8 12.9 112 205-316 140-254 (292)
297 PF07719 TPR_2: Tetratricopept 86.0 1.9 4.1E-05 26.3 4.3 27 593-619 3-29 (34)
298 PF07035 Mic1: Colon cancer-as 85.8 25 0.00055 31.3 15.4 101 286-396 15-115 (167)
299 KOG4648 Uncharacterized conser 85.8 3 6.4E-05 40.9 7.2 103 553-671 105-208 (536)
300 COG4649 Uncharacterized protei 85.5 26 0.00056 31.2 15.3 123 346-468 69-195 (221)
301 cd00923 Cyt_c_Oxidase_Va Cytoc 85.1 7.3 0.00016 30.7 7.7 63 609-672 25-87 (103)
302 KOG4234 TPR repeat-containing 85.0 9 0.00019 34.8 9.3 62 592-655 135-197 (271)
303 KOG1258 mRNA processing protei 84.7 62 0.0013 34.8 34.6 189 439-640 296-489 (577)
304 PF02284 COX5A: Cytochrome c o 84.7 14 0.0003 29.6 9.1 63 609-672 28-90 (108)
305 COG4785 NlpI Lipoprotein NlpI, 83.7 37 0.0008 31.5 16.5 29 627-655 238-266 (297)
306 PF13374 TPR_10: Tetratricopep 83.0 3.1 6.8E-05 26.7 4.6 29 193-221 2-30 (42)
307 KOG4570 Uncharacterized conser 82.5 21 0.00046 34.9 11.2 50 490-539 115-164 (418)
308 PF02259 FAT: FAT domain; Int 82.1 63 0.0014 32.9 24.3 66 473-538 144-212 (352)
309 PF04097 Nic96: Nup93/Nic96; 81.8 93 0.002 34.8 19.3 28 371-398 325-355 (613)
310 KOG0687 26S proteasome regulat 81.7 57 0.0012 32.2 14.2 99 546-653 105-208 (393)
311 PF09477 Type_III_YscG: Bacter 81.1 27 0.00059 28.2 10.0 81 139-223 18-99 (116)
312 KOG2471 TPR repeat-containing 81.1 63 0.0014 33.8 14.6 115 519-639 249-382 (696)
313 PF00515 TPR_1: Tetratricopept 81.1 4.6 0.0001 24.6 4.6 29 194-222 2-30 (34)
314 KOG2066 Vacuolar assembly/sort 80.5 1E+02 0.0022 34.4 29.9 102 272-382 363-467 (846)
315 PF10345 Cohesin_load: Cohesin 80.4 1E+02 0.0023 34.4 34.6 69 602-670 372-456 (608)
316 TIGR02508 type_III_yscG type I 80.2 28 0.00061 27.8 10.3 85 142-231 20-105 (115)
317 PF13374 TPR_10: Tetratricopep 79.5 4.8 0.0001 25.8 4.5 28 592-619 3-30 (42)
318 PF13431 TPR_17: Tetratricopep 79.1 2.8 6E-05 25.9 3.0 20 545-564 13-32 (34)
319 KOG0276 Vesicle coat complex C 78.8 48 0.001 35.7 13.2 150 277-466 598-747 (794)
320 PRK10941 hypothetical protein; 78.7 24 0.00053 34.4 10.8 79 593-675 183-262 (269)
321 COG3947 Response regulator con 78.7 68 0.0015 31.3 18.0 72 593-665 281-357 (361)
322 KOG4570 Uncharacterized conser 78.7 34 0.00074 33.6 11.3 102 295-398 59-163 (418)
323 KOG4648 Uncharacterized conser 78.6 9.5 0.00021 37.6 7.7 54 448-502 105-158 (536)
324 COG1747 Uncharacterized N-term 78.1 98 0.0021 32.8 25.1 182 261-450 62-249 (711)
325 PF07719 TPR_2: Tetratricopept 77.8 6.7 0.00015 23.7 4.6 29 194-222 2-30 (34)
326 PRK09687 putative lyase; Provi 77.6 76 0.0017 31.3 29.4 235 297-556 34-278 (280)
327 PF11207 DUF2989: Protein of u 77.5 23 0.0005 32.5 9.4 73 492-565 123-198 (203)
328 KOG1464 COP9 signalosome, subu 77.3 70 0.0015 30.7 20.9 178 480-674 150-350 (440)
329 PF13181 TPR_8: Tetratricopept 76.5 4.3 9.3E-05 24.7 3.4 27 593-619 3-29 (34)
330 TIGR03504 FimV_Cterm FimV C-te 76.3 3.4 7.3E-05 27.4 2.8 26 631-656 4-29 (44)
331 COG4455 ImpE Protein of avirul 76.1 19 0.0004 33.4 8.3 75 479-554 5-81 (273)
332 COG5187 RPN7 26S proteasome re 75.4 78 0.0017 30.8 12.5 28 510-537 115-142 (412)
333 KOG1258 mRNA processing protei 75.0 1.3E+02 0.0028 32.6 32.3 189 403-605 295-489 (577)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 74.8 26 0.00056 27.8 7.7 45 388-432 25-69 (103)
335 PF02284 COX5A: Cytochrome c o 74.1 44 0.00096 26.8 8.9 44 249-292 29-72 (108)
336 KOG0403 Neoplastic transformat 73.9 1.2E+02 0.0025 31.6 18.5 74 479-557 513-586 (645)
337 PF09613 HrpB1_HrpK: Bacterial 73.8 64 0.0014 28.5 14.4 103 451-562 21-126 (160)
338 KOG0276 Vesicle coat complex C 73.5 45 0.00098 35.8 11.4 97 452-569 649-745 (794)
339 PF11207 DUF2989: Protein of u 73.5 32 0.00069 31.6 9.3 71 575-646 125-198 (203)
340 COG2976 Uncharacterized protei 73.3 66 0.0014 29.4 10.9 87 273-364 97-188 (207)
341 KOG2063 Vacuolar assembly/sort 73.2 1.8E+02 0.004 33.5 18.4 28 195-222 506-533 (877)
342 PF14853 Fis1_TPR_C: Fis1 C-te 72.4 14 0.0003 25.7 5.2 39 632-672 7-45 (53)
343 KOG3364 Membrane protein invol 70.8 39 0.00085 28.7 8.4 82 588-672 29-115 (149)
344 COG5159 RPN6 26S proteasome re 70.2 1.1E+02 0.0024 29.7 15.0 123 272-394 10-149 (421)
345 PF07721 TPR_4: Tetratricopept 70.1 6.5 0.00014 22.4 2.8 23 195-217 3-25 (26)
346 PF07575 Nucleopor_Nup85: Nup8 70.1 1.8E+02 0.0039 32.2 16.6 27 192-219 148-174 (566)
347 COG0790 FOG: TPR repeat, SEL1 69.8 1.2E+02 0.0026 30.0 21.9 164 490-667 92-278 (292)
348 PF00637 Clathrin: Region in C 69.3 1.6 3.5E-05 38.0 0.1 49 519-567 16-64 (143)
349 PF00637 Clathrin: Region in C 68.6 1.3 2.7E-05 38.7 -0.7 48 346-393 18-65 (143)
350 PF09613 HrpB1_HrpK: Bacterial 67.4 89 0.0019 27.6 14.3 14 348-361 57-70 (160)
351 PF10579 Rapsyn_N: Rapsyn N-te 67.1 24 0.00052 26.8 5.8 21 593-613 45-65 (80)
352 COG4785 NlpI Lipoprotein NlpI, 67.0 1.1E+02 0.0024 28.5 19.5 179 419-621 79-267 (297)
353 PHA02875 ankyrin repeat protei 66.8 1.3E+02 0.0028 31.5 14.1 138 202-357 8-154 (413)
354 PF13174 TPR_6: Tetratricopept 66.3 10 0.00023 22.6 3.4 27 196-222 3-29 (33)
355 KOG4234 TPR repeat-containing 66.2 74 0.0016 29.2 9.7 58 341-399 140-197 (271)
356 PF09986 DUF2225: Uncharacteri 65.9 1.2E+02 0.0025 28.5 11.8 68 593-660 120-199 (214)
357 PF13181 TPR_8: Tetratricopept 65.9 17 0.00036 22.0 4.3 29 194-222 2-30 (34)
358 PF10579 Rapsyn_N: Rapsyn N-te 65.3 35 0.00076 25.9 6.4 48 522-569 18-67 (80)
359 KOG2063 Vacuolar assembly/sort 64.3 2.8E+02 0.006 32.2 18.1 57 166-222 310-375 (877)
360 KOG4077 Cytochrome c oxidase, 63.8 50 0.0011 27.7 7.5 37 617-653 75-111 (149)
361 PF02259 FAT: FAT domain; Int 63.8 1.7E+02 0.0038 29.6 27.2 53 272-328 5-57 (352)
362 PF08424 NRDE-2: NRDE-2, neces 63.2 1.7E+02 0.0038 29.5 19.1 126 491-622 47-185 (321)
363 COG4455 ImpE Protein of avirul 62.3 53 0.0012 30.5 8.2 56 305-361 6-61 (273)
364 COG2909 MalT ATP-dependent tra 62.0 2.9E+02 0.0063 31.6 29.2 230 380-616 425-684 (894)
365 KOG0686 COP9 signalosome, subu 61.9 1.5E+02 0.0033 30.4 12.0 62 442-503 152-215 (466)
366 COG3947 Response regulator con 61.4 1.7E+02 0.0037 28.7 16.8 60 477-537 281-340 (361)
367 TIGR03504 FimV_Cterm FimV C-te 61.1 19 0.00042 23.8 4.0 23 376-398 5-27 (44)
368 PF14689 SPOB_a: Sensor_kinase 60.6 14 0.0003 26.7 3.6 46 607-654 6-51 (62)
369 PF13174 TPR_6: Tetratricopept 60.5 14 0.00031 22.0 3.2 23 597-619 6-28 (33)
370 KOG1550 Extracellular protein 60.3 2.7E+02 0.0058 30.7 29.2 130 372-505 290-427 (552)
371 KOG4642 Chaperone-dependent E3 59.9 78 0.0017 30.0 9.0 83 587-671 39-127 (284)
372 KOG0292 Vesicle coat complex C 59.8 3.2E+02 0.0068 31.3 20.9 130 274-433 652-781 (1202)
373 smart00028 TPR Tetratricopepti 59.7 18 0.00039 20.5 3.7 27 593-619 3-29 (34)
374 PF15297 CKAP2_C: Cytoskeleton 59.6 89 0.0019 31.4 9.9 66 607-674 119-188 (353)
375 PF10366 Vps39_1: Vacuolar sor 59.2 78 0.0017 25.9 8.2 27 593-619 41-67 (108)
376 KOG4521 Nuclear pore complex, 57.8 3.5E+02 0.0077 32.1 15.1 179 200-395 927-1127(1480)
377 TIGR02561 HrpB1_HrpK type III 57.7 1.3E+02 0.0028 26.2 12.0 50 348-399 23-73 (153)
378 PF07163 Pex26: Pex26 protein; 57.2 1.4E+02 0.003 29.1 10.4 85 307-393 90-181 (309)
379 PF13762 MNE1: Mitochondrial s 56.8 1.3E+02 0.0029 26.1 11.3 92 581-672 27-126 (145)
380 PHA02875 ankyrin repeat protei 56.3 2.6E+02 0.0056 29.3 15.5 17 572-588 296-312 (413)
381 COG5159 RPN6 26S proteasome re 55.5 2.1E+02 0.0045 27.9 16.1 90 479-568 129-229 (421)
382 PF11848 DUF3368: Domain of un 54.8 42 0.00091 22.7 5.0 32 637-668 13-44 (48)
383 PF07163 Pex26: Pex26 protein; 54.7 1.6E+02 0.0036 28.6 10.4 57 342-398 90-146 (309)
384 KOG0890 Protein kinase of the 53.1 6.3E+02 0.014 32.8 35.5 61 592-655 1671-1731(2382)
385 KOG0687 26S proteasome regulat 51.7 2.6E+02 0.0056 27.9 11.6 73 592-664 105-182 (393)
386 KOG2500 Uncharacterized conser 50.9 22 0.00049 32.6 4.0 8 3-10 186-193 (253)
387 PF13762 MNE1: Mitochondrial s 50.6 1.7E+02 0.0037 25.4 12.0 24 338-361 42-65 (145)
388 PF11848 DUF3368: Domain of un 49.1 59 0.0013 22.0 5.0 36 201-236 10-45 (48)
389 KOG2168 Cullins [Cell cycle co 49.0 4.6E+02 0.01 30.0 25.6 24 199-222 331-354 (835)
390 KOG4507 Uncharacterized conser 48.8 1.3E+02 0.0028 32.5 9.5 104 311-416 618-721 (886)
391 PRK14700 recombination factor 48.6 2.8E+02 0.0061 27.5 14.1 124 191-332 65-198 (300)
392 PF14689 SPOB_a: Sensor_kinase 48.2 44 0.00095 24.1 4.5 28 476-503 24-51 (62)
393 PRK10564 maltose regulon perip 48.1 38 0.00082 33.2 5.3 38 193-230 257-294 (303)
394 PF10366 Vps39_1: Vacuolar sor 48.0 1.5E+02 0.0033 24.2 9.0 26 268-293 42-67 (108)
395 PF10345 Cohesin_load: Cohesin 47.4 4.5E+02 0.0097 29.4 43.8 61 267-328 61-127 (608)
396 PF14853 Fis1_TPR_C: Fis1 C-te 46.8 75 0.0016 22.1 5.3 35 597-633 7-41 (53)
397 KOG2659 LisH motif-containing 46.4 2.5E+02 0.0054 26.5 10.1 66 261-328 22-92 (228)
398 cd08819 CARD_MDA5_2 Caspase ac 45.9 1.3E+02 0.0028 23.5 6.8 37 487-528 48-84 (88)
399 PF00244 14-3-3: 14-3-3 protei 45.4 2.8E+02 0.0061 26.5 11.1 58 375-432 6-64 (236)
400 PF13929 mRNA_stabil: mRNA sta 45.2 3.1E+02 0.0068 27.0 20.0 63 367-429 199-262 (292)
401 COG0790 FOG: TPR repeat, SEL1 44.7 3.2E+02 0.0069 26.9 25.0 16 455-470 206-221 (292)
402 PF07575 Nucleopor_Nup85: Nup8 44.4 1E+02 0.0022 34.1 8.8 24 82-105 149-172 (566)
403 PF11838 ERAP1_C: ERAP1-like C 44.4 3.4E+02 0.0074 27.1 20.5 79 317-398 147-229 (324)
404 KOG4077 Cytochrome c oxidase, 44.3 1.5E+02 0.0033 24.9 7.4 45 495-539 69-113 (149)
405 PF10475 DUF2450: Protein of u 44.0 2.8E+02 0.006 27.5 11.0 110 447-567 105-219 (291)
406 KOG1924 RhoA GTPase effector D 43.0 23 0.00049 39.0 3.2 6 10-15 547-552 (1102)
407 KOG0686 COP9 signalosome, subu 43.0 4E+02 0.0087 27.6 15.7 29 474-504 305-333 (466)
408 PF15471 TMEM171: Transmembran 42.4 28 0.00061 32.9 3.4 14 2-16 217-230 (319)
409 KOG2471 TPR repeat-containing 41.4 4.6E+02 0.01 27.9 17.2 107 414-522 249-381 (696)
410 KOG4507 Uncharacterized conser 41.3 2.7E+02 0.0059 30.2 10.5 131 318-451 591-721 (886)
411 PF12862 Apc5: Anaphase-promot 41.0 1.7E+02 0.0036 23.1 7.4 57 556-619 9-69 (94)
412 PF11846 DUF3366: Domain of un 40.5 1.1E+02 0.0023 28.2 7.1 44 612-659 132-175 (193)
413 TIGR02561 HrpB1_HrpK type III 40.3 2.5E+02 0.0055 24.5 12.8 20 345-364 54-73 (153)
414 PRK07003 DNA polymerase III su 40.2 4.1E+02 0.0088 30.5 12.2 20 640-659 259-278 (830)
415 KOG1029 Endocytic adaptor prot 38.5 38 0.00083 37.3 4.1 10 7-16 119-128 (1118)
416 PF04762 IKI3: IKI3 family; I 38.4 3.6E+02 0.0077 32.0 12.3 28 407-434 814-843 (928)
417 PRK14951 DNA polymerase III su 37.9 5.4E+02 0.012 28.8 12.9 30 630-660 255-284 (618)
418 PF09477 Type_III_YscG: Bacter 36.9 2.3E+02 0.0051 23.1 8.5 79 420-505 21-99 (116)
419 TIGR02508 type_III_yscG type I 36.9 2.3E+02 0.0049 22.9 9.1 51 449-505 48-98 (115)
420 PF09986 DUF2225: Uncharacteri 36.8 3.6E+02 0.0078 25.3 12.5 71 547-621 120-195 (214)
421 PRK10564 maltose regulon perip 36.7 85 0.0018 30.9 5.8 44 588-631 253-297 (303)
422 COG5108 RPO41 Mitochondrial DN 35.8 3.5E+02 0.0077 29.8 10.4 76 480-555 33-113 (1117)
423 PF11846 DUF3366: Domain of un 35.4 1.8E+02 0.0038 26.7 7.7 32 367-398 141-172 (193)
424 PRK08691 DNA polymerase III su 35.4 3.9E+02 0.0084 30.2 11.2 34 629-663 249-282 (709)
425 COG2912 Uncharacterized conser 35.2 3.2E+02 0.007 26.6 9.3 80 595-677 185-264 (269)
426 PF02847 MA3: MA3 domain; Int 34.8 1.9E+02 0.0042 23.5 7.2 24 269-292 6-29 (113)
427 PF09454 Vps23_core: Vps23 cor 34.7 87 0.0019 22.9 4.3 51 588-639 5-55 (65)
428 COG5187 RPN7 26S proteasome re 34.2 4.6E+02 0.01 25.8 14.0 97 405-503 115-220 (412)
429 PF09670 Cas_Cas02710: CRISPR- 33.4 5.4E+02 0.012 26.7 11.6 126 412-538 138-269 (379)
430 PF09454 Vps23_core: Vps23 cor 33.3 80 0.0017 23.1 3.9 49 473-522 6-54 (65)
431 smart00777 Mad3_BUB1_I Mad3/BU 33.0 1.8E+02 0.0039 24.6 6.5 72 571-650 48-123 (125)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 32.5 1.6E+02 0.0036 24.8 6.4 74 545-618 46-126 (126)
433 PF12968 DUF3856: Domain of Un 31.7 3.1E+02 0.0067 23.0 9.5 67 545-617 55-126 (144)
434 COG4003 Uncharacterized protei 31.5 1.9E+02 0.0042 22.0 5.6 26 596-621 36-61 (98)
435 PRK15180 Vi polysaccharide bio 31.0 6.7E+02 0.014 26.6 16.5 243 332-581 286-536 (831)
436 PF11768 DUF3312: Protein of u 31.0 5.4E+02 0.012 27.9 10.9 23 305-327 413-435 (545)
437 COG0735 Fur Fe2+/Zn2+ uptake r 30.8 2.5E+02 0.0054 24.4 7.3 62 357-419 8-69 (145)
438 PF11817 Foie-gras_1: Foie gra 30.4 2.4E+02 0.0051 27.2 7.9 22 375-396 183-204 (247)
439 PRK10941 hypothetical protein; 29.8 5.4E+02 0.012 25.2 11.1 60 479-539 185-244 (269)
440 KOG3779 Homeobox transcription 29.7 76 0.0017 32.4 4.3 30 6-37 444-473 (737)
441 PRK13800 putative oxidoreducta 29.4 1E+03 0.022 28.2 28.4 262 368-672 633-895 (897)
442 PF11817 Foie-gras_1: Foie gra 29.3 2.5E+02 0.0053 27.1 7.8 20 447-466 185-204 (247)
443 PLN03025 replication factor C 29.3 6E+02 0.013 25.5 13.6 80 589-671 223-310 (319)
444 COG0735 Fur Fe2+/Zn2+ uptake r 29.0 3.2E+02 0.007 23.7 7.7 45 480-524 25-69 (145)
445 PF10475 DUF2450: Protein of u 28.8 4.8E+02 0.01 25.8 10.0 52 341-398 104-155 (291)
446 PF11663 Toxin_YhaV: Toxin wit 28.6 55 0.0012 27.8 2.7 29 604-634 108-136 (140)
447 PF02847 MA3: MA3 domain; Int 28.5 3.2E+02 0.007 22.2 7.5 23 479-501 6-28 (113)
448 PF12968 DUF3856: Domain of Un 28.3 3.6E+02 0.0078 22.6 8.7 73 192-291 54-126 (144)
449 cd00280 TRFH Telomeric Repeat 28.2 4.1E+02 0.0088 24.3 8.0 22 342-363 118-139 (200)
450 KOG1114 Tripeptidyl peptidase 28.2 1E+03 0.022 27.9 15.9 63 590-653 1230-1293(1304)
451 cd00280 TRFH Telomeric Repeat 27.9 4E+02 0.0087 24.3 7.9 42 596-640 116-157 (200)
452 KOG2297 Predicted translation 27.9 6.1E+02 0.013 25.2 21.6 151 283-460 185-341 (412)
453 KOG0376 Serine-threonine phosp 27.8 1.2E+02 0.0026 31.9 5.4 105 482-602 11-116 (476)
454 PF11663 Toxin_YhaV: Toxin wit 27.7 87 0.0019 26.7 3.7 35 635-671 104-138 (140)
455 PRK14963 DNA polymerase III su 27.2 7.9E+02 0.017 26.7 11.9 19 640-658 255-273 (504)
456 TIGR01503 MthylAspMut_E methyl 26.8 4.2E+02 0.0092 28.0 9.0 158 454-623 68-244 (480)
457 KOG4567 GTPase-activating prot 26.8 3.6E+02 0.0079 26.7 8.0 57 425-486 263-319 (370)
458 PF04910 Tcf25: Transcriptiona 26.7 7.2E+02 0.016 25.6 22.9 123 187-328 34-167 (360)
459 COG2256 MGS1 ATPase related to 26.2 7.6E+02 0.017 25.7 15.0 104 192-314 191-298 (436)
460 PRK12356 glutaminase; Reviewed 25.8 5.4E+02 0.012 25.8 9.4 24 628-651 233-256 (319)
461 KOG4567 GTPase-activating prot 25.8 6.8E+02 0.015 25.0 10.3 93 573-674 260-362 (370)
462 PF08424 NRDE-2: NRDE-2, neces 25.4 7.1E+02 0.015 25.1 18.9 62 457-520 48-109 (321)
463 KOG0376 Serine-threonine phosp 25.3 1.3E+02 0.0028 31.6 5.2 92 577-674 25-118 (476)
464 PRK13342 recombination factor 25.2 8.1E+02 0.018 25.7 20.1 24 454-477 244-267 (413)
465 PRK14958 DNA polymerase III su 25.1 8.5E+02 0.019 26.5 11.7 22 640-661 259-280 (509)
466 COG5108 RPO41 Mitochondrial DN 24.8 4.8E+02 0.01 28.9 9.2 91 410-503 33-131 (1117)
467 KOG2297 Predicted translation 24.6 7.1E+02 0.015 24.8 21.1 68 488-565 268-341 (412)
468 COG2178 Predicted RNA-binding 24.3 4.5E+02 0.0097 24.2 7.7 25 268-292 32-56 (204)
469 PRK14956 DNA polymerase III su 24.1 9.2E+02 0.02 26.0 12.3 41 625-665 247-287 (484)
470 cd08819 CARD_MDA5_2 Caspase ac 24.1 3.5E+02 0.0077 21.1 7.4 14 384-397 50-63 (88)
471 KOG1464 COP9 signalosome, subu 23.5 6.9E+02 0.015 24.3 24.1 83 312-394 39-129 (440)
472 PF11768 DUF3312: Protein of u 23.3 9.8E+02 0.021 26.0 11.6 23 375-397 413-435 (545)
473 PRK09857 putative transposase; 23.0 5.7E+02 0.012 25.4 9.2 62 340-402 211-272 (292)
474 PRK14135 recX recombination re 22.9 7E+02 0.015 24.1 10.7 114 529-661 28-141 (263)
475 KOG4642 Chaperone-dependent E3 22.9 6.8E+02 0.015 24.0 11.8 101 450-554 20-126 (284)
476 smart00777 Mad3_BUB1_I Mad3/BU 22.7 3.5E+02 0.0075 22.9 6.4 42 575-616 82-124 (125)
477 PF12862 Apc5: Anaphase-promot 22.7 3.8E+02 0.0082 21.0 8.0 22 517-538 48-69 (94)
478 PF02184 HAT: HAT (Half-A-TPR) 22.5 1.9E+02 0.0042 17.7 3.5 23 607-631 3-25 (32)
479 COG4715 Uncharacterized conser 22.3 1E+03 0.022 25.9 19.5 50 373-427 306-355 (587)
480 PRK09111 DNA polymerase III su 21.6 1.1E+03 0.025 26.2 12.2 21 604-624 271-291 (598)
481 smart00386 HAT HAT (Half-A-TPR 21.6 1.7E+02 0.0038 16.7 4.0 29 605-634 1-29 (33)
482 PF00244 14-3-3: 14-3-3 protei 21.4 7.2E+02 0.016 23.7 11.5 57 410-466 6-63 (236)
483 KOG2659 LisH motif-containing 21.2 7.1E+02 0.015 23.6 11.3 101 541-654 22-131 (228)
484 PRK11639 zinc uptake transcrip 21.1 5.5E+02 0.012 23.0 7.9 59 467-526 18-76 (169)
485 PRK09462 fur ferric uptake reg 21.0 4.8E+02 0.01 22.6 7.5 35 385-419 32-66 (148)
486 PF09868 DUF2095: Uncharacteri 21.0 3.8E+02 0.0081 22.1 5.8 44 596-640 66-109 (128)
487 PRK06645 DNA polymerase III su 20.8 1.1E+03 0.024 25.6 12.7 21 640-660 271-291 (507)
488 KOG3807 Predicted membrane pro 20.7 8.7E+02 0.019 24.4 13.5 161 306-480 190-351 (556)
489 COG0819 TenA Putative transcri 20.6 7.2E+02 0.016 23.4 9.3 63 540-602 104-166 (218)
490 COG2178 Predicted RNA-binding 20.6 6.7E+02 0.015 23.1 10.2 17 522-538 133-149 (204)
491 KOG4279 Serine/threonine prote 20.2 1E+03 0.023 26.9 10.7 197 457-674 180-392 (1226)
492 cd07153 Fur_like Ferric uptake 20.2 2.1E+02 0.0046 23.4 4.8 47 198-244 5-51 (116)
493 PRK11639 zinc uptake transcrip 20.1 5.6E+02 0.012 22.9 7.8 42 378-419 33-74 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-72 Score=646.38 Aligned_cols=571 Identities=19% Similarity=0.254 Sum_probs=459.6
Q ss_pred cccccchhhHHHHhhcCCCccccccccCCCcchhhhHHHHHhhhcCCChhhHHHHHHHHhhCCCChHHHHHHHHHHHHCC
Q 005729 78 QKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHN 157 (680)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (680)
.++..+.+.++..+++.|..++|..+.+ .+.... ..++......+...|...+.++.|.++|..+.+.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~----------~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 116 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLE----------SMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH 116 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHH----------HHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC
Confidence 3455667888999999998866543322 122211 12333333344456777788999999999999998
Q ss_pred CCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 005729 158 LCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ 236 (680)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 236 (680)
.. .+..++|.|+++|+++|++++|+.+ ..+.++|.++||+||.+|++.|++++|+++|++|...|+.||.+||+.+++
T Consensus 117 ~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 117 PS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 63 5577899999999999999999998 778889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005729 237 SLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316 (680)
Q Consensus 237 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 316 (680)
+|++.++.. .+++++..|.+.|+.+|..++|.||.+|++.|++++|.++|+.|. .||..+||++|.+|++.|++
T Consensus 196 ~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 196 TCGGIPDLA--RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HhCCccchh--hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCH
Confidence 998888774 457888888888888888888888888888888888888888886 46778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888888888887788877777777777777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI 476 (680)
Q Consensus 397 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 476 (680)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.++..
T Consensus 350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 4 356667777777777777777777777777777777777777777777777677666666666666666666666
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC------------------------------CCCCCHHHHHHHHHHHHhcCCH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQER------------------------------GYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------~~~p~~~t~~~li~~~~~~g~~ 526 (680)
+||.||.+|+++|++++|.++|++|.+. ++.||..||+.++.+|++.|..
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 6666666666666666666665555332 3566666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-------------------hhHHHHHHHHHHHHHCCC
Q 005729 527 EDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------------------GLSDQAVNAFRVMRTDGL 587 (680)
Q Consensus 527 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-------------------~~~~~a~~~~~~m~~~g~ 587 (680)
+.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+ |..++|+++|++|.+.|+
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6666666666666777777777788889999999999988775 667899999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHH
Q 005729 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMK-ENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAM 666 (680)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 666 (680)
.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++| .+.||..+|..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 9999999999999999999999999999999 6899999999999999999999999999999998 48999999999
Q ss_pred HHHHHHH
Q 005729 667 LRSALRY 673 (680)
Q Consensus 667 l~~a~~~ 673 (680)
++.+|+.
T Consensus 663 Ll~ac~~ 669 (857)
T PLN03077 663 LLNACRI 669 (857)
T ss_pred HHHHHHH
Confidence 9999974
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-71 Score=621.94 Aligned_cols=531 Identities=19% Similarity=0.332 Sum_probs=497.9
Q ss_pred ChhhHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHH
Q 005729 125 PAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISAC 203 (680)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~ 203 (680)
..+.+..+...+| +.|+++.|.++|++|.+.|..+.+...++.++..|.+.|.+.+|+.+ ..+..||..+|+.+|.+|
T Consensus 369 ~~~~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 369 KSPEYIDAYNRLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CchHHHHHHHHHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3456667777777 56899999999999999997677778889999999999999999988 556669999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHH
Q 005729 204 ARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASK 283 (680)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 283 (680)
++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++. +.++|++|.+.|+.||..+||.||.+|++.|++++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~--A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999855 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 284 AMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE--SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM 361 (680)
Q Consensus 284 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 361 (680)
|+++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 678999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 362 ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH 441 (680)
Q Consensus 362 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 441 (680)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 521 (680)
+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH------Hh--------hhHHHHHHHHHHHHHCCC
Q 005729 522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC------LE--------GLSDQAVNAFRVMRTDGL 587 (680)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~------~~--------~~~~~a~~~~~~m~~~g~ 587 (680)
+.|++++|.+++.+|.+.|+.||..+|++++..|.+ ++++|.+. |+ ...++|+.+|++|.+.|+
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999976532 34444333 22 335789999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|..++++|.+.|+.|+..
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999989999999999999999888999999999999998432 368999999999999999986
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.4e-67 Score=586.97 Aligned_cols=495 Identities=19% Similarity=0.325 Sum_probs=466.3
Q ss_pred chHHHHHHHHHHhcccCCHHHHHHh-h-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 005729 161 SYELLYSILIHALGRSEKLYEAFLL-S-----QRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234 (680)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~-~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 234 (680)
.+...|..++..|++.|++.+|+.+ . ....++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3455688888999999999999987 1 12346777888999999999999999999999975 999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005729 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (680)
Q Consensus 235 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 314 (680)
|.+|++.|+++. +.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 444 L~a~~k~g~~e~--A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 444 MSVCASSQDIDG--ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHhCcCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 999999999855 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER--SGVLPDEHTYSLLIDAYANAGRWESARIV 392 (680)
Q Consensus 315 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (680)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 005729 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE 472 (680)
Q Consensus 393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 472 (680)
|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
||..+|+.+|.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHH
Q 005729 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE-----------------------DQRDAE 609 (680)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-----------------------~g~~~~ 609 (680)
.+|++.|++++|.++ |..|.+.|+.||..+|++++..|.+ .++.++
T Consensus 762 ~a~~k~G~le~A~~l-----------~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 762 VASERKDDADVGLDL-----------LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred HHHHHCCCHHHHHHH-----------HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 999999998887766 6689999999999999999976542 123578
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 610 AFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 610 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
|..+|++|++.|+.||..||+.++.++++.+....+..++++|...+..|+..++..++.++.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 999999999999999999999999888899999999999999999999999999998877764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-66 Score=595.18 Aligned_cols=505 Identities=17% Similarity=0.239 Sum_probs=461.7
Q ss_pred ChhhHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHH
Q 005729 125 PAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISAC 203 (680)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~ 203 (680)
|+...+..+...|...+++..+.++|..+.+.|+ .++..+++.||.+|+++|++++|..+ ..+..+|.++||+||.+|
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~ 263 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF-ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC-CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 3333333344445566777888888888888885 45678899999999999999999998 778889999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHH
Q 005729 204 ARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASK 283 (680)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 283 (680)
++.|++++|+++|++|.+.|+.||.+||+.++.+|++.|+.+ .+++++..|.+.|+.||..+||.||.+|++.|++++
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~--~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER--LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999884 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 284 AMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (680)
Q Consensus 284 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 363 (680)
|.++|+.|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999996 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 364 SGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFY 443 (680)
Q Consensus 364 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 443 (680)
.|+.|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 99999999999999999999999999999999964 6888999999999999999999999999986 589999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 444 NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (680)
Q Consensus 444 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 523 (680)
+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+||.+|+++|++++|.++|+++ .+|..+|+.+|.+|++.
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAH 567 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999987 57899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHH
Q 005729 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR-TDGLKPSNLALNSLINAFG 602 (680)
Q Consensus 524 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~ 602 (680)
|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++ |+.|. ..|+.|+..+|++++++|+
T Consensus 568 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~-----------f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY-----------FHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH-----------HHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777665 56787 5689999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 603 EDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 603 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
+.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+ +.|+..
T Consensus 637 r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~ 691 (857)
T PLN03077 637 RAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV 691 (857)
T ss_pred hCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc
Confidence 9999999999999883 789999999999998888888888888877776 456543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.7e-62 Score=544.22 Aligned_cols=472 Identities=19% Similarity=0.263 Sum_probs=439.9
Q ss_pred hhhHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005729 126 APLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACAR 205 (680)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~ 205 (680)
...|..++..++ ..++++.|..+|.|+...+. ..+|..+|++++.+|++
T Consensus 87 ~~~~~~~i~~l~-~~g~~~~Al~~f~~m~~~~~------------------------------~~~~~~t~~~ll~a~~~ 135 (697)
T PLN03081 87 GVSLCSQIEKLV-ACGRHREALELFEILEAGCP------------------------------FTLPASTYDALVEACIA 135 (697)
T ss_pred ceeHHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------------------------------CCCCHHHHHHHHHHHHh
Confidence 345666776665 34677778888877765431 24678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 005729 206 NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAM 285 (680)
Q Consensus 206 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (680)
.++++.|.+++..|.+.|+.||..+|+.++..|++.|+++. |.++|++|. .||..+||.+|.+|++.|++++|+
T Consensus 136 ~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~--A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID--ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH--HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999855 579999996 479999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005729 286 RFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSG 365 (680)
Q Consensus 286 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 365 (680)
++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||.||++|++.|++++|.++|++|.+
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 287 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-- 287 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 366 VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNV 445 (680)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 445 (680)
+|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.
T Consensus 288 --~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 --KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred --CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (680)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 525 (680)
|+++|++.|++++|.++|++|. .+|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999999997 479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 526 WEDVKRLLGNMRA-QGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGED 604 (680)
Q Consensus 526 ~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 604 (680)
+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++ + .+..|+..+|++|+.+|..+
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~-----------~---~~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR-----------R---APFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH-----------H---CCCCCCHHHHHHHHHHHHHc
Confidence 9999999999986 5999999999999999999999999987653 3 35789999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCC
Q 005729 605 QRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCT 658 (680)
Q Consensus 605 g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 658 (680)
|+++.|..+++++.+ +.| +..+|..|++.|++.|++++|.+++++|.+.|+.
T Consensus 508 g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 508 KNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999976 556 4679999999999999999999999999999975
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-60 Score=528.97 Aligned_cols=511 Identities=16% Similarity=0.239 Sum_probs=445.8
Q ss_pred ccccchhhHHHHhhcCCCccccccccCCCcchhhhHHHHHhhhcCCChh-hHHHHHHHHhhCCCChHHHHHHHHHHHHCC
Q 005729 79 KQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAP-LWHSLLKNLCSSNSSIDLAYAVVSWLQKHN 157 (680)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (680)
.+..+++..+..++..|..++|..+.+ .+.......++. .+..++. .|...++++.+.++|..+.+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~----------~m~~~~~~~~~~~t~~~ll~-a~~~~~~~~~a~~l~~~m~~~g 153 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFE----------ILEAGCPFTLPASTYDALVE-ACIALKSIRCVKAVYWHVESSG 153 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHH----------HHHhcCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHhC
Confidence 344567788888888888765543322 122222222333 4445554 4556788999999999999999
Q ss_pred CCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 005729 158 LCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ 236 (680)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 236 (680)
+. ++..+++.|+++|+++|++++|..+ ..+..+|.++||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.
T Consensus 154 ~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 154 FE-PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CC-cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 64 5688999999999999999999998 777889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005729 237 SLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316 (680)
Q Consensus 237 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 316 (680)
+|++.|.. ..+++++..+.+.|+.+|..++|.||.+|+++|++++|.++|+.|. .+|+++||++|.+|++.|+.
T Consensus 233 a~~~~~~~--~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 233 ASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHhcCCcH--HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence 99999987 4467999999999999999999999999999999999999999996 47999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCH
Q 005729 397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS-EGIEPDT 475 (680)
Q Consensus 397 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~ 475 (680)
. .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 6 4789999999999999999999999999999999999999999999999999999999999999986 6999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 005729 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDI 554 (680)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 554 (680)
.+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|..+++++.+. .| +..+|..|++.
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~ 537 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNL 537 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHH
Confidence 99999999999999999999999876 56899999999999999999999999999999764 45 46799999999
Q ss_pred HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHH-------HHHHHhc----CCHHHHHHHHHHHHHCCC
Q 005729 555 YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSL-------INAFGED----QRDAEAFAVLQYMKENGL 622 (680)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l-------i~~~~~~----g~~~~A~~~~~~m~~~g~ 622 (680)
|++.|++++|.++ ++.|++.|++... .+|..+ +.+-..+ .-++...++..+|.+.|.
T Consensus 538 y~~~G~~~~A~~v-----------~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 538 YNSSGRQAEAAKV-----------VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606 (697)
T ss_pred HHhCCCHHHHHHH-----------HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 9999999988776 5588888875332 233211 1110001 113456678888899999
Q ss_pred CCCHH
Q 005729 623 KPDVV 627 (680)
Q Consensus 623 ~p~~~ 627 (680)
.||..
T Consensus 607 ~~~~~ 611 (697)
T PLN03081 607 VAEEN 611 (697)
T ss_pred CCCcc
Confidence 99753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-28 Score=285.97 Aligned_cols=519 Identities=15% Similarity=0.092 Sum_probs=351.5
Q ss_pred hhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 137 CSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKA 212 (680)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A 212 (680)
....++++.|...+..+.+.. |.+...+..+...+.+.|++++|... ....+.+...|+.+...+.+.|++++|
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 334566777777777766654 44455566666666667777666654 333444566666666666666777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChH--------------------------------HHHHHHHHHHhCC
Q 005729 213 LNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSS--------------------------------LLQKLYKEIECDK 260 (680)
Q Consensus 213 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~--------------------------------~~~~l~~~~~~~~ 260 (680)
++.|+++.+.. +.+...+..+...+...|+.+.+ .+..+++.+...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 77666665543 12233333444444444444322 122334433332
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005729 261 IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNA 340 (680)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 340 (680)
.+.+..+++.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 23455666777777777777777777777766542 2334556666677777777777777777776653 345666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (680)
+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.... +.+...|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 7777777777777777777776654 2355666677777777777777777777776543 4466777777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005729 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (680)
+++|...|+++.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777654 4456677777777778888888888888777654 34567777778888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------
Q 005729 501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE----------- 569 (680)
Q Consensus 501 m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----------- 569 (680)
+.+.+ +.+...+..+...+...|++++|...+.++...+ |+..++..++.++.+.|++++|.+.++
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 77765 5566777777778888888888888888887753 444667777888888888888877665
Q ss_pred ------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 570 ------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALI 637 (680)
Q Consensus 570 ------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 637 (680)
+..++|.+.|+++.+.. +.+..+++.++..+.+.|+ .+|+.+++++.+.. +-+..++..+..++.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44567777787877653 3455678888888888888 77888888887742 235567778888888
Q ss_pred hcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 638 RVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 638 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
+.|++++|.++++++++.+.. +..++..+..++.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 882 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL 882 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 899999999999999987654 6666665555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-28 Score=287.59 Aligned_cols=498 Identities=13% Similarity=0.052 Sum_probs=352.9
Q ss_pred hCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005729 138 SSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKAL 213 (680)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (680)
...|+++.|..+|.++.+.+ +.+...+..+...+...|++.+|... ....+.+...+..++..+.+.|++++|+
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 34456666666666666554 44445555666666666666666544 2222233344555566666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005729 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (680)
.+++++... .+.+..++..+...+...|+.+. +...|.++.+.. +.+...+..+...+...|++++|.+.|+.+..
T Consensus 452 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 452 AAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK--AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH--HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666554 23455667777777777777744 457777766542 34556677777778888888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (680)
Q Consensus 294 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 373 (680)
.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+...|
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 53 3456677777788888888888888888877654 3456667777777888888888888888777643 3466777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
..+...|...|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 777888888888888888888776653 3355667777777777888888888887777653 45567777777777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+ |+..++..+...+.+.|++++|.+.+
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888887777664 3456667777777777788888888887777664 44466666777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCCC
Q 005729 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKPS 590 (680)
Q Consensus 534 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p~ 590 (680)
.++.+.. +.+...+..+...|.+.|++++|.+.|+ +. .+|+..++++.... +-+
T Consensus 760 ~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~ 836 (899)
T TIGR02917 760 EAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNI 836 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCC
Confidence 7777653 3366777777777777777777777765 22 34666677766532 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 591 NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 591 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
..++..+..++...|++++|..+++++.+.+. .+..++..++.++.+.|++++|.+++++|+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45788899999999999999999999999653 388999999999999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=4.4e-20 Score=217.65 Aligned_cols=506 Identities=13% Similarity=0.031 Sum_probs=298.1
Q ss_pred HhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHH---------------
Q 005729 136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTY--------------- 196 (680)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~--------------- 196 (680)
+....++.+.|.+.+.++.... |.++.++..++..+.+.|+.++|... ....+.+...+
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhh
Confidence 4445566777777777777665 66666777777777777777777654 33333343332
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005729 197 -NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSL-TRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG 274 (680)
Q Consensus 197 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~ 274 (680)
..+...+.+.|++++|++.|+++...+ +|+...-....... ...|+. ..+...++++.... +.+...+..+...
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~--~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQR--PEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccH--HHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 233445667777777777777776543 22221100111111 122444 23456666666542 3355566677777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC------------------C--------------CCHHHH-------------------
Q 005729 275 FAKAGDASKAMRFLGMAQGVGL------------------S--------------PKTATY------------------- 303 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~------------------~--------------p~~~~~------------------- 303 (680)
+...|+.++|++.++++..... . |+...+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 7777777777777766543210 0 000000
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH-------
Q 005729 304 --AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-DEHTY------- 373 (680)
Q Consensus 304 --~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------- 373 (680)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 011234556677777777777777653 3366677777777777777777777777776643221 11111
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 005729 374 -----SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI- 447 (680)
Q Consensus 374 -----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li- 447 (680)
..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112345567777777777777777654 2345566667777777777777777777776543 22333333333
Q ss_pred -----------------------------------------HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 448 -----------------------------------------DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF 486 (680)
Q Consensus 448 -----------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 486 (680)
..+...|++++|...|++..+.. +-+...+..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33344566666666666665543 223445555666666
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHh
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV---------VTYTTLVDIYGQ 557 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------~~~~~li~~~~~ 557 (680)
+.|++++|...|+++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666666666666665542 223333333333444555555555555544321111111 112234455666
Q ss_pred cCChHHHHHHHh-------------------hhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 558 SGRFDDAIECLE-------------------GLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 558 ~g~~~~A~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (680)
.|+.++|.++++ +..++|+..|++..+. .|+ ...+..++.+|...|++++|++.++..
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777766664 4556777777777764 344 458888889999999999999999987
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 618 KENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 618 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
.+. .| +..++..+..++.+.|++++|.+++++++...
T Consensus 664 l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 664 PAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 763 44 45667778888889999999999999988753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=7.1e-19 Score=207.47 Aligned_cols=497 Identities=11% Similarity=0.027 Sum_probs=292.0
Q ss_pred HhhCCCChHHHHHHHHHHHHCCCCCchHH-HHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHH
Q 005729 136 LCSSNSSIDLAYAVVSWLQKHNLCYSYEL-LYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLE 210 (680)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~ 210 (680)
+....+++++|.+.+..+.+.+ +++.. ............|+.++|+.. ....+.++..+..+...+...|+++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 3456789999999999998876 44322 111222223356889999876 4455677889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC--hhhHHH-------------HHHHHH-hcCCCC-hHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005729 211 KALNLMSKMRQDGYHCD--FINYSL-------------VIQSLT-RTNKID-SSLLQKLYKEIECDKIELDGQLLNDVIV 273 (680)
Q Consensus 211 ~A~~~~~~m~~~g~~p~--~~~~~~-------------ll~~~~-~~g~~~-~~~~~~l~~~~~~~~~~~~~~~~~~li~ 273 (680)
+|+..|+++........ ...+.. .+..+. ...+.. ...+...+..+......|+.. ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 99999999865421000 000000 000000 000000 000111222211111111111 112234
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH------------HH
Q 005729 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAY------------NA 340 (680)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~------------~~ 340 (680)
.+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... +...| ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4555666666666666665532 1245556666666666666666666666665532211 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------------
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI------------- 407 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------------- 407 (680)
....+.+.|++++|...|+++.+.. +.+...+..+...|...|++++|++.|++..+.... +...
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCH
Confidence 1234455666666666666666543 224455555666666666666666666666543221 1111
Q ss_pred -----------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 005729 408 -----------------------------YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (680)
Q Consensus 408 -----------------------------~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 458 (680)
+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 2223445567789999999999988764 4456777888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC---------------------------------
Q 005729 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG--------------------------------- 505 (680)
Q Consensus 459 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------------------------- 505 (680)
|...++++.+.. +.+...+..+...+.+.|+.++|...++.+....
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999987653 2244444444444455666666666655432211
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 005729 506 ------YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAF 579 (680)
Q Consensus 506 ------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~ 579 (680)
.+.+...+..+...+.+.|++++|...++++.+.. +.+...+..++..|...|++++|.+.+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l----------- 660 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL----------- 660 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH-----------
Confidence 12333444555555666666666666666666542 124555666666666666666665554
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 580 RVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGL--KP---DVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 580 ~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
+...+ ..|+ ..++..+..++...|++++|.++++++....- .| +...+..+...+.+.|+.++|...|++.+
T Consensus 661 ~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 661 AKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44443 2344 44677888899999999999999999987421 12 23567777889999999999999999987
Q ss_pred H
Q 005729 654 L 654 (680)
Q Consensus 654 ~ 654 (680)
.
T Consensus 739 ~ 739 (1157)
T PRK11447 739 V 739 (1157)
T ss_pred h
Confidence 4
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-20 Score=185.65 Aligned_cols=434 Identities=16% Similarity=0.133 Sum_probs=333.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005729 196 YNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ-SLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG 274 (680)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~ 274 (680)
-..|..-..+.|++++|.+--...-+.+ |+..--..++. .+....+.+...+ +.....+..+--..+|..+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a---~~~~a~r~~~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSA---GSLLAIRKNPQGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhh---hhhhhhhccchHHHHHHHHHHH
Confidence 5566777788888888888766554442 22222222222 3333333333221 1111222234456788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHH
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLSP-KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY-NALLKGYVKMGYLK 352 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~ 352 (680)
+-..|++++|+++++.+.+. +| .+..|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+-..|+++
T Consensus 126 ~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccc
Confidence 99999999999999999875 45 4678999999999999999999999998875 4665544 33444555679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 353 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
+|...+.+.++... --...|+.|...+-.+|+...|++.|++..+.++ .-...|-.+...|...+.+++|...|.+..
T Consensus 202 ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 202 EAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99999988887632 2356788899999999999999999999876532 235578888899999999999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005729 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT 512 (680)
Q Consensus 433 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 512 (680)
... +...+.+..+...|...|+++.|+..|++.++.. +.=...|+.|..++-..|+..+|.+++++.+... +--...
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 653 4556788888888999999999999999998764 2236689999999999999999999999988764 445678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 005729 513 YNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591 (680)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~ 591 (680)
.+.|...+...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|+..|+ +..+ ++|+.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk-----------ealr--I~P~f 421 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYK-----------EALR--IKPTF 421 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHH-----------HHHh--cCchH
Confidence 88899999999999999999999887 4454 5678889999999999999988765 2222 67887
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 592 L-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 592 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
. .|+.+.+.|-..|+.+.|+..+.+.+. +.|.. ..++.|...|-..|+..+|+.-|++.++ ++||..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 5 899999999999999999999999988 66764 5788899999999999999999999987 566653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=2.5e-17 Score=185.69 Aligned_cols=483 Identities=13% Similarity=0.033 Sum_probs=276.7
Q ss_pred HHhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHH
Q 005729 135 NLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLE 210 (680)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~ 210 (680)
.+....|+++.|+..|+.+++.. |.+..++..|...|.+.|+.++|+.. ....+.|...+..+ ..+ ++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccCh
Confidence 34445589999999999999988 78889999999999999999999877 44555556666655 323 8999
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHH--------HHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHHcCC
Q 005729 211 KALNLMSKMRQDGYHCDF-INYSLVIQS--------LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV-IVGFAKAGD 280 (680)
Q Consensus 211 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~--------~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~ 280 (680)
+|..+|+++.... |+. ..+..+... |.+.+ .+.+..+ .......|+..+.... ...|.+.|+
T Consensus 126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~e-----qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLP-----VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHH-----HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999874 443 333333332 43332 2334444 3333334445555555 889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSN-SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVS 359 (680)
Q Consensus 281 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 359 (680)
+++|++.+.++.+.+. .+..-...+...|.+ .++ +++..+++. .++-+...+..+...|.+.|+.++|.++++
T Consensus 198 w~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 198 WSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988752 334445566667776 366 667666543 223577777788888888888888888777
Q ss_pred HHHHCCCC-CCHHHH------------------------------HHHHHHHHHc-------------------------
Q 005729 360 EMERSGVL-PDEHTY------------------------------SLLIDAYANA------------------------- 383 (680)
Q Consensus 360 ~m~~~g~~-~~~~~~------------------------------~~li~~~~~~------------------------- 383 (680)
++...... |...+| -.++..+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 76432111 111111 0012222233
Q ss_pred --------------------------------------CCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcC----
Q 005729 384 --------------------------------------GRWESARIVLKEMEVS-H-AKPNSFIYSRILAGYRDRG---- 419 (680)
Q Consensus 384 --------------------------------------g~~~~A~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~g---- 419 (680)
|+.++|.++|+..... + ...+......++..|.+.+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3333444444333221 0 1112222223444443333
Q ss_pred -----------------------------------------------------------CHHHHHHHHHHHHHCCCCCCH
Q 005729 420 -----------------------------------------------------------EWQRTFQVLKEMKSSGVEPDT 440 (680)
Q Consensus 420 -----------------------------------------------------------~~~~A~~l~~~m~~~~~~p~~ 440 (680)
+.++|...+.+.... .|+.
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCch
Confidence 223333333332222 1222
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
.....+...+...|++++|...|+++... .|+...+..+...+.+.|++++|..++++..+.+ +.+...+..+...+
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 22222222223444444444444444322 2222233333444444455555555554444432 22222222222222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 005729 521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLIN 599 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~ 599 (680)
...|++++|...+++.++. .|+...+..+..++.+.|++++|+.. +++... ..|+. ..++.+..
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~-----------l~~AL~--l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD-----------LRAALE--LEPNNSNYQAALGY 651 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH-----------HHHHHH--hCCCCHHHHHHHHH
Confidence 3335555555555555442 23444455555555555555555444 445554 34554 47788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCH
Q 005729 600 AFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDR 661 (680)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 661 (680)
++...|++++|+..+++..+ ..| +...+..+..++...|++++|...+++.++. .|+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 88999999999999998888 345 5678888999999999999999999999874 4544
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.2e-20 Score=192.95 Aligned_cols=304 Identities=14% Similarity=0.123 Sum_probs=154.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCC
Q 005729 309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD---EHTYSLLIDAYANAGR 385 (680)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 385 (680)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666543 22444556666666666666666666666555321111 1344555555555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005729 386 WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR 465 (680)
Q Consensus 386 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 465 (680)
+++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 666666555555432 23344555555555555555555555555544321111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005729 466 MLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV 545 (680)
Q Consensus 466 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 545 (680)
....+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123334444555555555555555555432 223444455555555555555555555555543221113
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (680)
.++..++.+|.+.|++++|.+.++ ++.+ ..|+...+..++..+.+.|++++|..+++++.+ ..|+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~-----------~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~ 314 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLR-----------RALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPS 314 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-----------HHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcC
Confidence 344555555555555555554433 2222 134444445556666666666666666666555 2455
Q ss_pred HHHHHHHHHHHHh---cCCcCcHHHHHHHHHHcCCCCCH
Q 005729 626 VVTYTTLMKALIR---VDKFHKVPAVYEEMILSGCTPDR 661 (680)
Q Consensus 626 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~ 661 (680)
...+..++..+.. .|+.+++..++++|+++++.||+
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5555555555443 33556666666666655555544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=8e-19 Score=175.47 Aligned_cols=432 Identities=15% Similarity=0.138 Sum_probs=306.3
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (680)
..|++.+|...-..+-..+ +.+....-.+-.++....+++..... ....+.-..+|..+.+.+-..|++++|+.
T Consensus 60 q~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHH
Confidence 4466666666555554443 22222222233444444444443322 33333345677778888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005729 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (680)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (680)
+|+.|.+.. |+ .+..|..+..++...|+.+.|.+.|...++.
T Consensus 138 ~y~~aiel~--p~------------------------------------fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 138 LYRAAIELK--PK------------------------------------FIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HHHHHHhcC--ch------------------------------------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 888777652 32 2334555666777777888888877777663
Q ss_pred CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 005729 295 GLSPKTATY-AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD-EHT 372 (680)
Q Consensus 295 g~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~ 372 (680)
.|+.... ..+...+-..|++.+|...|.+.++.. +-=...|..|...+-.+|++..|++-|++..+.. |+ ...
T Consensus 180 --nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dA 254 (966)
T KOG4626|consen 180 --NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDA 254 (966)
T ss_pred --CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHH
Confidence 5665543 344555566788888888888877642 1234567888888888888888888888887753 33 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 452 (680)
|-.|...|...+.++.|...|.+..... +.....+..+...|..+|+.+.|++.|++..+.. +.-...|+.|..++-.
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKD 332 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHh
Confidence 7788888888888888888888776543 2345567777778888888888888888887653 3336788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 532 (680)
.|++.+|...|...+... .-.....+.|...|...|.+++|..+|....+-. +--....+.|...|-+.|++++|...
T Consensus 333 ~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred ccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 899999999998888753 2346678888899999999999999998887753 33456788888889999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 005729 533 LGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEA 610 (680)
Q Consensus 533 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A 610 (680)
+++.++ ++|+ ...|+.+...|-..|+.+.|+..+. +..+ +.|... .++.|...|-..|++.+|
T Consensus 411 Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~-----------rAI~--~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 411 YKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYT-----------RAIQ--INPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHH-----------HHHh--cCcHHHHHHhhHHHHhhccCCcHHH
Confidence 998887 5675 4578888888888888888887654 2222 456654 788899999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005729 611 FAVLQYMKENGLKPDV-VTYTTLMKAL 636 (680)
Q Consensus 611 ~~~~~~m~~~g~~p~~-~~~~~l~~~~ 636 (680)
+.-+++..+ ++||. ..|..++.++
T Consensus 476 I~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 476 IQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 999999988 67774 4565566554
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3e-19 Score=187.72 Aligned_cols=278 Identities=19% Similarity=0.174 Sum_probs=186.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKM 348 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li~~~~~~ 348 (680)
...+...|++++|++.|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999864 23566899999999999999999999999987542222 35688899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 005729 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAGYRDRGEWQRT 424 (680)
Q Consensus 349 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A 424 (680)
|++++|..+|+++.+.. +.+..++..++..|.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999763 346789999999999999999999999999876543322 2344555666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 425 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+......+++.++.+|++.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766543 23344555555556666666666666666554321111234455555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 505 GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (680)
Q Consensus 505 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (680)
. |+...+..++..+.+.|++++|..++.++.+. .|+...++.++..+.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 2 33334445555555555555555555555442 344444444444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.8e-17 Score=182.17 Aligned_cols=406 Identities=12% Similarity=0.013 Sum_probs=278.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005729 231 YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITAL 310 (680)
Q Consensus 231 ~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 310 (680)
+...-..+.+.|+++.+ ...|.+.+.. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~A--i~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKA--IKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHH--HHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 33444556667777543 4777766653 4566677777777888888888888887777642 22455777777788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH------------------
Q 005729 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHT------------------ 372 (680)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~------------------ 372 (680)
...|++++|+.-|......+-..+. ....++..+........+...++.-... .|....
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPEN--LPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHccCCcchhhhh
Confidence 8888888887777665543211121 1112222111111111111111110000 000000
Q ss_pred ------------HHHHHHH---HHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 373 ------------YSLLIDA---YANAGRWESARIVLKEMEVSH--AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG 435 (680)
Q Consensus 373 ------------~~~li~~---~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 435 (680)
+..+... ....+++++|.+.|++....+ .+.....+..+...+...|++++|+..+++..+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0000000 012367899999999998764 23345678888889999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI 515 (680)
Q Consensus 436 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 515 (680)
+.....|..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...|++.++.. +.+...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 3446788899999999999999999999998764 4467889999999999999999999999999875 556788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HH
Q 005729 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-AL 594 (680)
Q Consensus 516 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~ 594 (680)
+...+.+.|++++|...+++.++.. +.+...++.+...+...|++++|++.|+... ++-... .+...+.. .+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al----~l~p~~--~~~~~~~~~l~ 511 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI----ELEKET--KPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH----hcCCcc--ccccccHHHHH
Confidence 8999999999999999999998752 3367889999999999999999998765222 110000 00111111 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 595 NSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
+..+..+...|++++|..++++..+. .| +...+..+...+.+.|++++|.++|++..+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22333344579999999999999884 45 45578899999999999999999999998753
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.6e-16 Score=174.45 Aligned_cols=399 Identities=13% Similarity=0.041 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG 274 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~ 274 (680)
.+......|.+.|++++|+..|++.... .|+...|..+-.++.+.|+++.+ ...+....+.. +.+...|..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~A--i~~~~~al~l~-p~~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKV--VEDTTAALELD-PDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHH--HHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4566788899999999999999998875 57888888888899999998664 47777766543 3467789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHH----------------
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPRTK---------------- 336 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~---------------- 336 (680)
|...|++++|+..|..+...+-..+.. ...++..+... .+........+... .|...
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 999999999999988776543222222 22222221111 11111111111110 00000
Q ss_pred --------------HHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 337 --------------AYNALLKG---YVKMGYLKDAEFVVSEMERSG-V-LPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 337 --------------~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
.+..+... ....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00001000 012367899999999998764 2 2345678888899999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 398 VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (680)
Q Consensus 398 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 477 (680)
... +.+...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|++..+.. +.+...
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 764 2346688889999999999999999999988764 5568899999999999999999999999999875 346778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV------TYTTL 551 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l 551 (680)
+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|...+++..+.....+.. .++..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8889999999999999999999998764 5568889999999999999999999999998753221111 11222
Q ss_pred HHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 552 VDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (680)
Q Consensus 552 i~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (680)
...+...|++++|.+.++ +... +.|+. ..+..+..++.+.|++++|+++|++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~-----------kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCE-----------KALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHH-----------HHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 223334577777766554 4333 24544 47899999999999999999999999873
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5e-16 Score=171.60 Aligned_cols=287 Identities=9% Similarity=0.010 Sum_probs=128.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (680)
..+.+.|++++|+.+++....... -+...+..++.++...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 334444555555555544444321 112233333344444555555555555554432 223344444445555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 353 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
+|...++++.+.. +.+...+..+...|...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 1134444445555555555555555555444332211 1122111 22444555555555555544
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCC
Q 005729 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR----AEELFEEMQERGYFP 508 (680)
Q Consensus 433 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p 508 (680)
+....++...+..+...+.+.|++++|...++.+.+.. +.+...+..+...|.+.|++++ |...|++..+.. +.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 33211222233333444445555555555555554433 2234444445555555555543 455555554443 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 509 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
+...+..+...+.+.|++++|...+++..+... .+...+..+..+|.+.|++++|+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344455555555555555555555555554321 1233444445555555555554444
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.8e-14 Score=162.89 Aligned_cols=479 Identities=11% Similarity=0.021 Sum_probs=325.9
Q ss_pred CChHHHHHHHHHHHHCCCCCchHHHHHHHHHH--------hcccCCHHHHHHhhCCCCC--CHH-HHHHHHHHHHHcCCH
Q 005729 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHA--------LGRSEKLYEAFLLSQRQRL--TPL-TYNALISACARNDDL 209 (680)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~--~~~-~~~~li~~~~~~g~~ 209 (680)
+..+.|..+++.+.+.. |.+..++..+... |.+.++..+++. .....+ ++. ..-.+...|.+.|++
T Consensus 122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 56778888888888887 7777777777776 788877777777 333333 344 444458999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005729 210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTR-TNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFL 288 (680)
Q Consensus 210 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 288 (680)
++|+++++++.+.+. .+......+-.++.. .++ ..+..++.. .+..+...+..++..|.+.|+.++|.+++
T Consensus 199 ~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~---~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 199 SQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD---DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH---HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999863 233334455556665 344 223444432 33468889999999999999999999998
Q ss_pred HHHHhCCCC-CCHHHHHH------------------------------HHHHHHhcCChH--------------------
Q 005729 289 GMAQGVGLS-PKTATYAA------------------------------VITALSNSGRTI-------------------- 317 (680)
Q Consensus 289 ~~~~~~g~~-p~~~~~~~------------------------------li~~~~~~g~~~-------------------- 317 (680)
+.+...... |...+|-. ++..+.+.++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA 350 (987)
T ss_pred HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence 876532111 11111111 122223333333
Q ss_pred -------------------------------------------HHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCC--
Q 005729 318 -------------------------------------------EAEAVFEELKES-G-LKPRTKAYNALLKGYVKMGY-- 350 (680)
Q Consensus 318 -------------------------------------------~A~~l~~~m~~~-g-~~p~~~~~~~li~~~~~~g~-- 350 (680)
+|.++|+..... + ...+....+.++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 333333332220 0 01122233344455554443
Q ss_pred -HHHHHHH----------------------HHHHHH-CCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 005729 351 -LKDAEFV----------------------VSEMER-SGV-LP--DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP 403 (680)
Q Consensus 351 -~~~A~~~----------------------~~~m~~-~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 403 (680)
..++..+ .+.... .+. ++ +...|..+..++.. ++.++|+..+.+..... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 1222111 111110 001 22 45666767766665 78888888777776653 5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (680)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 483 (680)
+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...++...+.. +.+...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 5544444555667899999999999998654 4555566777888899999999999999998765 223333334444
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005729 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (680)
...+.|++++|...+++..+.. |+...|..+..++.+.|+.++|...+.+..... +.+...++.+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4456699999999999999874 678899999999999999999999999999863 2267788899999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 005729 564 AIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDK 641 (680)
Q Consensus 564 A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 641 (680)
|+..++ +..+ ..|+ ...+..+..++...|++++|+..+++..+ +.|+. .+.........+..+
T Consensus 662 Ai~~l~-----------~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 662 SREMLE-----------RAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHH-----------HHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHH
Confidence 988765 2232 3454 45889999999999999999999999998 56754 566677777778888
Q ss_pred cCcHHHHHHHHHH
Q 005729 642 FHKVPAVYEEMIL 654 (680)
Q Consensus 642 ~~~A~~~~~~m~~ 654 (680)
++.|.+-+++...
T Consensus 727 ~~~a~~~~~r~~~ 739 (987)
T PRK09782 727 FRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.2e-15 Score=168.59 Aligned_cols=332 Identities=11% Similarity=0.072 Sum_probs=193.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005729 196 YNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGF 275 (680)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~ 275 (680)
...++..+.+.|++++|+.+++.......... ..+..+..++...|+.+. +...++.+.... +.+...+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~--A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA--VLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH--HHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34567778899999999999999887643222 223333334445565543 346666665532 23445566666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005729 276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355 (680)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (680)
...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 66667777766666666531 22344556666666666666666666666654432 122233222 2355666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 005729 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR----TFQVLKEM 431 (680)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~l~~~m 431 (680)
..++.+.+....++...+..+...+.+.|++++|+..+++..... +.+...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 666666554322333444444556666666666666666666543 2345555666666666666664 56666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-
Q 005729 432 KSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT- 510 (680)
Q Consensus 432 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 510 (680)
.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |+.
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 5543 3345566666666666666666666666666543 2234455556666666666666666666666543 332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 511 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
..+..+..++...|+.++|...++++.+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22333445566666666666666666654
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=4.4e-15 Score=167.67 Aligned_cols=419 Identities=11% Similarity=0.097 Sum_probs=279.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005729 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV 271 (680)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 271 (680)
++..-.-.+......|+.++|++++.+..... +.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--------------------------------------~~~a~~~~~l 55 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM--------------------------------------QLPARGYAAV 55 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------------------CCCHHHHHHH
Confidence 34444455566667777777777776665421 2233345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 351 (680)
...+.+.|++++|.++|+...+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+...+...|+.
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH
Confidence 666677777777777777766542 2235556677777777888888888888777652 33445 77777777778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCC
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS------FIYSRILAGYR-----DRGE 420 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~-----~~g~ 420 (680)
++|...++++.+.... +...+..+...+...++.++|++.++.... .|+. .....++.... ..++
T Consensus 133 ~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 133 WDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 8888888887776422 455556667777777777777777765543 1221 01111222221 1223
Q ss_pred H---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCC
Q 005729 421 W---QRTFQVLKEMKSS-GVEPDTH-FY----NVMIDTFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFKCGR 490 (680)
Q Consensus 421 ~---~~A~~l~~~m~~~-~~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~ 490 (680)
+ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. .-..+...|...|+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~ 287 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ 287 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC
Confidence 3 6788888887753 1123221 11 11133445678999999999998876532 322 22225678889999
Q ss_pred hhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHH
Q 005729 491 YDRAEELFEEMQERGYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----------LPN---VVTYTTLVD 553 (680)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~ 553 (680)
+++|+.+|+++.+..... ....+..+..++.+.|++++|..+++.+.+... .|+ ...+..+..
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 999999999987653111 134566677788899999999999999887521 123 234566778
Q ss_pred HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005729 554 IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTL 632 (680)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 632 (680)
.+...|++++|++.++ ++... .+-+...+..+...+...|++++|++.+++..+ +.|+ ...+..+
T Consensus 368 ~l~~~g~~~eA~~~l~-----------~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~ 433 (765)
T PRK10049 368 VAKYSNDLPQAEMRAR-----------ELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQ 433 (765)
T ss_pred HHHHcCCHHHHHHHHH-----------HHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHH
Confidence 8889999999888765 33332 233445889999999999999999999999998 4565 5677788
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 633 MKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 633 ~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
+..+.+.|++++|..+++++++ ..|+......+.+..+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARARD 471 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 8899999999999999999998 4888887777666654
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.2e-14 Score=151.78 Aligned_cols=494 Identities=13% Similarity=0.104 Sum_probs=327.3
Q ss_pred ChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hC---CC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQ---RQ---RLTPLTYNALISACARNDDLEKALN 214 (680)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~ 214 (680)
++..+.+++..+-+.+ +.++.+.+.|.+.|.-.|++..++.+ .. .. ..-..+|.-+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 5556666666666555 56667788888888888888887766 11 11 1112357778888888888888888
Q ss_pred HHHHHHHcCCCCChhhHH--HHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 005729 215 LMSKMRQDGYHCDFINYS--LVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAG----DASKAMRFL 288 (680)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 288 (680)
.|.+..+. .++.++++ -+-+.+.+.|++.. +...|+.+.... +.+..+...|...|...+ ..++|..+.
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~--s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEE--SKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHH--HHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 88776654 35554444 34556666776644 346677666542 334556666666666654 456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 289 GMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK----ESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS 364 (680)
Q Consensus 289 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 364 (680)
.+..+.- ..|...|-.+...+....-+.. +.+|.... ..+-.+-....|.+...+...|++++|...|+.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 6666542 3456677766666655544443 66665543 3444567778888888888888888888888877643
Q ss_pred ---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 365 ---GVLPDE------HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG 435 (680)
Q Consensus 365 ---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 435 (680)
...+|. .+-..+...+-..++.+.|.++|..+.... +--+..|..++......+...+|...+++.....
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 112222 233345666667778888888888887753 2223345555544455577788888888877654
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCChhHHHHHHHHHH
Q 005729 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEPDTITWNTLIDCHFK------------CGRYDRAEELFEEMQ 502 (680)
Q Consensus 436 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~ 502 (680)
..++..+..+...+.+...+..|.+-|..+.+.- ..+|+.+.-.|.+.|.+ .+..++|+++|.+.+
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 5566677777778888888888888777776542 23466666566665442 245678888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHH
Q 005729 503 ERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVM 582 (680)
Q Consensus 503 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m 582 (680)
... +-|...-|.+.-.++..|++.+|..+|.+..+... -...+|..+.++|..+|++..|+++|+.. |
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~----------l 707 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC----------L 707 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 776 66778888888888999999999999999887643 24567888889999999998888887622 2
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------HhcCCcCc
Q 005729 583 RTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL------------------IRVDKFHK 644 (680)
Q Consensus 583 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~------------------~~~g~~~~ 644 (680)
......-+..+.+.|..++.+.|++.+|.+.+.........-....||..+-.. ...+..+.
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~ 787 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEE 787 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 222334566788889999999999999998888777632222334454433211 12245677
Q ss_pred HHHHHHHHHHcCCC
Q 005729 645 VPAVYEEMILSGCT 658 (680)
Q Consensus 645 A~~~~~~m~~~g~~ 658 (680)
|.++|.+|...+-.
T Consensus 788 a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 788 ARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhcCCC
Confidence 78888888766544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.7e-13 Score=151.91 Aligned_cols=443 Identities=13% Similarity=0.094 Sum_probs=291.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 005729 200 ISACARNDDLEKALNLMSKMRQDGYHCDF--INYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277 (680)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~ 277 (680)
+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.+. +...+++.. ...+........+...|..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~--A~~~~eka~-~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQE--VIDVYERYQ-SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHH--HHHHHHHhc-cCCCCCHHHHHHHHHHHHH
Confidence 334567777777777777777653 443 233 55666666676643 345555555 1112233334444567778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFV 357 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 357 (680)
.|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 888888999888888763 223556667778888888888888888888775 45656664444444445666668888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHh---------cCC---HHH
Q 005729 358 VSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY--SRILAGYRD---------RGE---WQR 423 (680)
Q Consensus 358 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~ll~~~~~---------~g~---~~~ 423 (680)
++++.+.+ +-+...+..+...+.+.|-...|+++.++-... +.+...-+ ...+.-..+ .++ .+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 88888774 336777778888888888888888776653211 11111101 000011111 112 344
Q ss_pred HHHHHHHHHHC-CCCCC-HHHH----HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005729 424 TFQVLKEMKSS-GVEPD-THFY----NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEEL 497 (680)
Q Consensus 424 A~~l~~~m~~~-~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 497 (680)
|+.-++.+... +-.|. ...| .=.+-++...++..++++.|+.+...+.+....+-..+.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 55555555441 11232 2222 223446678888999999999999887665666788889999999999999999
Q ss_pred HHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhc
Q 005729 498 FEEMQERG-----YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----------LP--NV-VTYTTLVDIYGQS 558 (680)
Q Consensus 498 ~~~m~~~~-----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~-~~~~~li~~~~~~ 558 (680)
++.+.... ..++......|.-++...+++++|..+++++.+... .| |- ..+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 99886542 123444467788889999999999999999987311 12 22 2334456677788
Q ss_pred CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 005729 559 GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALI 637 (680)
Q Consensus 559 g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 637 (680)
|++.+|.+.++ ++... -+-|......+.+.+...|+..+|..+++.+.. +.| +..+....+.++.
T Consensus 430 gdl~~Ae~~le-----------~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 430 NDLPTAQKKLE-----------DLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAM 495 (822)
T ss_pred CCHHHHHHHHH-----------HHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHH
Confidence 88888877765 33332 234555888899999999999999999977766 455 4567778888889
Q ss_pred hcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 638 RVDKFHKVPAVYEEMILSGCTPDRKARAMLRS 669 (680)
Q Consensus 638 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 669 (680)
..+++.+|..+.+++++. .|+......+.+
T Consensus 496 ~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 496 ALQEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred hhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 999999999999888874 777765554443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=9.1e-15 Score=165.12 Aligned_cols=408 Identities=12% Similarity=0.060 Sum_probs=256.4
Q ss_pred HHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 005729 166 YSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRT 241 (680)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 241 (680)
..=.+......|+.++|+.+ ....+.+...+..+...+.+.|++++|+.+|++..+.. |+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~------------ 83 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQND------------ 83 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH------------
Confidence 33445556667777777665 22345556678889999999999999999999987652 3321
Q ss_pred CCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005729 242 NKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEA 321 (680)
Q Consensus 242 g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 321 (680)
..+..++..+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+.
T Consensus 84 ------------------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 84 ------------------------DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred ------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 112233444555666666666666665541 22333 6666666666677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---H
Q 005729 322 VFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE------HTYSLLIDAYA-----NAGRW---E 387 (680)
Q Consensus 322 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~ 387 (680)
.++++.+.. +.+...+..+...+...|..++|.+.++.... .|+. .....++..+. ..+++ +
T Consensus 138 ~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 138 AMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 776666643 22444445556666666666666666655443 1111 01111222221 12233 6
Q ss_pred HHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHH
Q 005729 388 SARIVLKEMEVS-HAKPNSF-IY----SRILAGYRDRGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 388 ~A~~~~~~m~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
+|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 677777777643 1122211 11 11133445668888888888888776522 222 2223566788888888888
Q ss_pred HHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhc
Q 005729 461 AAFDRMLSEGIEP---DTITWNTLIDCHFKCGRYDRAEELFEEMQERG-----------YFPC---TTTYNIMINLLGEQ 523 (680)
Q Consensus 461 ~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~t~~~li~~~~~~ 523 (680)
..|+.+.+..... ....+..+..++.+.|++++|..+++.+.+.. -.|+ ...+..+...+...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 8888877643111 13445666667888899999999988887652 0123 23455677788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 005729 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFG 602 (680)
Q Consensus 524 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~ 602 (680)
|+.++|+.+++++.... +-+...+..+...+...|++++|++.++ +... ..|+. ..+..++..+.
T Consensus 373 g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~-----------~al~--l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 373 NDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK-----------KAEV--LEPRNINLEVEQAWTAL 438 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-----------HHHh--hCCCChHHHHHHHHHHH
Confidence 99999999999998763 3367888889999999999988887765 3332 35664 46667777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 603 EDQRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (680)
Q Consensus 603 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (680)
..|++++|..+++++++ ..|+......+-+
T Consensus 439 ~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 89999999999999998 4666544333333
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2e-14 Score=138.49 Aligned_cols=441 Identities=15% Similarity=0.178 Sum_probs=301.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 005729 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTN--KIDSSLLQKLYKEIECDKIELDGQLLND 270 (680)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 270 (680)
+.+-|.|+. ...+|.++.+.-+|+.|.+.|+..+...-..++...|-.+ ...-+ -.+-|-.|...|- ....+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~-E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFA-EWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcch-hHHHHhhcccccc-cccccc--
Confidence 445566555 5678899999999999999998888777666665544332 22211 1334444444332 122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005729 271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (680)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 350 (680)
+.|.+.+ -+|+.. +....||..+|.++|+--..+.|.++|++......+.+..+||.+|.+-.-.
T Consensus 191 ------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 3444433 223322 3456788889999999888888999998888777778888888888765433
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 005729 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES----ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR-TF 425 (680)
Q Consensus 351 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-A~ 425 (680)
...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..+|..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 226788888888888999999999999888887764 45677888888999999999988888888777643 44
Q ss_pred HHHHHHHH----CCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCC
Q 005729 426 QVLKEMKS----SGV----EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG----IEPD---TITWNTLIDCHFKCGR 490 (680)
Q Consensus 426 ~l~~~m~~----~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~ 490 (680)
.++.++.. +.+ +.|...|...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 222 2345667777888888889998888877665321 2233 2346677888889999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch-HHHHHHH
Q 005729 491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG-RF-DDAIECL 568 (680)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~-~~A~~~~ 568 (680)
.+.-...|+.|+-+-+.|+..+...++++..-.|+++-..++|..++..|..-+.....-++..+++.. .. .-+.+-+
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 999999999999887889999999999999999999999999999998876655555555555555543 21 1111111
Q ss_pred h--------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---CCCHHHHHHHHHHH
Q 005729 569 E--------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG-L---KPDVVTYTTLMKAL 636 (680)
Q Consensus 569 ~--------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~---~p~~~~~~~l~~~~ 636 (680)
. .+.+.-...-.+|++.. -.....+...-.+.+.|+.++|.+++..+.+.| - .|......-+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 1 11111111223444433 344567778888899999999999999986533 2 23333344566677
Q ss_pred HhcCCcCcHHHHHHHHHHcCC
Q 005729 637 IRVDKFHKVPAVYEEMILSGC 657 (680)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~g~ 657 (680)
.+......|...++-|...+.
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCc
Confidence 778888999999999876543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.2e-13 Score=144.37 Aligned_cols=454 Identities=13% Similarity=0.054 Sum_probs=266.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCH
Q 005729 188 RQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYH--CDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG 265 (680)
Q Consensus 188 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 265 (680)
..+.||++.+.|.+.|.-.|++..++.+...+...-.. .-...|--+-+++-..|+++.+ .+.|-+.....-..-+
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA--~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA--FKYYMESLKADNDNFV 342 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHccCCCCcc
Confidence 34455666666666666666666666666666553210 1122344455555566666443 2444333332111112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG----RTIEAEAVFEELKESGLKPRTKAYNAL 341 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~~~~~l 341 (680)
..+--|..+|.+.|+++.+...|+.+.+.. +-+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~l 420 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLEL 420 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHH
Confidence 333345566666666666666666665531 223344455555555443 3444555555544432 3455556555
Q ss_pred HHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHH
Q 005729 342 LKGYVKMGYLKDAEFVVSEM----ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS---HAKPNS------FIY 408 (680)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~ 408 (680)
...+....-+.. +..|... ...+-.+.+...|.+...+...|++++|...|+..... ...++. .+-
T Consensus 421 aql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 555544433222 4444332 23344455666666666666777777777766665443 111111 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 488 (680)
-.+....-..++.+.|.+.|..+.+.. +--+..|..+..+.-..+...+|...+....... ..+...+..+...|.+.
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhh
Confidence 334445555566667777777666542 2223444444433344466667777777766543 34555666666677777
Q ss_pred CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 489 GRYDRAEELFEEMQER-GYFPCTTTYNIMINLLGE------------QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555 (680)
Q Consensus 489 g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 555 (680)
..+..|.+-|+..... ...+|.++...|.+.|.+ .+..++|.++|.+.++... -|...-+.+.-.+
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhh
Confidence 7777777766665543 223566666666665532 3446778888888877532 2667777777778
Q ss_pred HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 005729 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMK 634 (680)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~ 634 (680)
+..|++.+|..+|. +.++... -...+|-.+.++|..+|++..|+++|+...+ ..-.-+..+...|.+
T Consensus 657 A~kg~~~~A~dIFs-----------qVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFS-----------QVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhccCchHHHHHHH-----------HHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 88888888777754 4444321 2345799999999999999999999998775 444447788999999
Q ss_pred HHHhcCCcCcHHHHHHHHHHcCCCCCHHH
Q 005729 635 ALIRVDKFHKVPAVYEEMILSGCTPDRKA 663 (680)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 663 (680)
++.+.|.+.+|.+.+...+.. .|...+
T Consensus 725 a~y~~~~~~eak~~ll~a~~~--~p~~~~ 751 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL--APSNTS 751 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh--CCccch
Confidence 999999999999998888764 454443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=5.2e-14 Score=135.63 Aligned_cols=347 Identities=15% Similarity=0.147 Sum_probs=249.0
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCH
Q 005729 186 SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG 265 (680)
Q Consensus 186 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 265 (680)
.+..+.++.+|.+||+++|+-...+.|.++|++......+.+..+||.+|.+-.-.. .+++..+|....+.||.
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------GKKLVAEMISQKMTPNL 273 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------cHHHHHHHHHhhcCCch
Confidence 566778889999999999999999999999999998888999999999997654332 36899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCC----C
Q 005729 266 QLLNDVIVGFAKAGDASKA----MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE-AEAVFEELKE----SGL----K 332 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~----~ 332 (680)
.++|+++.+..+.|+++.| ++++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ..+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999988765 5567899999999999999999999999888754 4444444432 222 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 005729 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSG----VLPD---EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS 405 (680)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 405 (680)
.|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 356677888899999999999998887765421 2333 234566788888999999999999999877778888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-C--------HH-----HHHHHH-------H
Q 005729 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN-C--------LH-----HAMAAF-------D 464 (680)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~--------~~-----~A~~~~-------~ 464 (680)
.+...++++..-.+.++-.-+++.+++..|..-+.....-++..+++.. . +. -|..++ .
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999988775555444444444444433 0 00 011111 1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YF---PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (680)
Q Consensus 465 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 540 (680)
+|.+. .......+.+...+.+.|+.++|.++|..+..++ -. |......-++..-.+.+...+|..+++-|...+
T Consensus 514 R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 12222 2334445555556666777777777776664432 11 222223344445555666666666666665543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.3e-12 Score=145.04 Aligned_cols=429 Identities=11% Similarity=0.045 Sum_probs=281.6
Q ss_pred hCCCChHHHHHHHHHHHHCCCCCchH-HHHHHHHHHhcccCCHHHHHHh-hC-CC--CCCHHHHHHHHHHHHHcCCHHHH
Q 005729 138 SSNSSIDLAYAVVSWLQKHNLCYSYE-LLYSILIHALGRSEKLYEAFLL-SQ-RQ--RLTPLTYNALISACARNDDLEKA 212 (680)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~-~~-~~--~~~~~~~~~li~~~~~~g~~~~A 212 (680)
.+.|+++.|+..+..+++.+ |.+. .++ -++..++..|+.++|+.. .. .. +.+.....++...|...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 36788889999999888876 5542 333 777777788888888776 11 11 22233333445677778888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 213 LNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ 292 (680)
Q Consensus 213 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (680)
+++|+++.+.. |+. ...+..++..|...++.++|++.++.+.
T Consensus 122 iely~kaL~~d--P~n------------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 122 LALWQSSLKKD--PTN------------------------------------PDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHhhC--CCC------------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 88888887763 332 2222334455666677777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 293 GVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHT 372 (680)
Q Consensus 293 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 372 (680)
.. .|+...+..++..+...++..+|++.++++.+.. +.+...+..++..+.+.|-...|.++..+-... +.+....
T Consensus 164 ~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~ 239 (822)
T PRK14574 164 ER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYR 239 (822)
T ss_pred cc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHH
Confidence 54 4555555444444444555555777777777763 335666667777777777777776655543321 0111100
Q ss_pred H--HHHHHHHH---------HcCC---HHHHHHHHHHHHHC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 373 Y--SLLIDAYA---------NAGR---WESARIVLKEMEVS-HAKPN-SF----IYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 373 ~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-~~~~~-~~----~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
+ ...+.-.+ ...+ .+.|+.-++.+... +..|. .. ...-.+-++...|++.++++.|+.|.
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 0 00000011 1112 34455555555542 11132 12 22344567788899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-
Q 005729 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-----IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY- 506 (680)
Q Consensus 433 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 506 (680)
..+.+....+-..+.++|...++.++|..+|..+.... ..++......|..+|...+++++|..+++++.+.-.
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 88766566688889999999999999999999987642 122344457788899999999999999999987310
Q ss_pred ----------CC--CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 005729 507 ----------FP--CT-TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573 (680)
Q Consensus 507 ----------~p--~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 573 (680)
.| |- ..+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k---- 474 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK---- 474 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH----
Confidence 11 21 223445677889999999999999998763 3388899999999999999998887754
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 574 QAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV 627 (680)
Q Consensus 574 ~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 627 (680)
.... +.|+.. +....+.++...|++++|..+.+...+ ..|+..
T Consensus 475 -------~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 475 -------AVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred -------HHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 2222 356554 677888888889999999999988887 456544
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.6e-11 Score=124.67 Aligned_cols=400 Identities=11% Similarity=0.093 Sum_probs=196.9
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 005729 259 DKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK 336 (680)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 336 (680)
+|+..+...|-.=...|-..|..-.+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|...++- ++-+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhH
Confidence 44444444444444444444544444444444444443321 234444445555555555555555444442 223334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR 416 (680)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 416 (680)
.|......--..|..+....+|++.... ++-....|.....-+-..|+...|..++.+..+.... +...|...++.-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 4444444444444444444444444443 1223333333334444445555555554444443321 3444444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005729 417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE 496 (680)
Q Consensus 417 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 496 (680)
...++++|..+|.+.... .|+...|.--+....-.+..++|.+++++.++.- +.-...|-.+.+.+-+.++++.|.+
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 444555555555444432 2333333333333333444444554444444331 1112334444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhH----
Q 005729 497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLS---- 572 (680)
Q Consensus 497 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 572 (680)
.|..-.+. ++-....|..+.+.=-+.|.+-.|..++++..-.+.+ +...|...|++-.+.|..+.|...+...+
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44443332 1223333444444444444444455554444443322 34444444444444454444444332111
Q ss_pred ------HHHHHH----------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 573 ------DQAVNA----------FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636 (680)
Q Consensus 573 ------~~a~~~----------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 636 (680)
.+++.+ .+.|++ +.-|..+...+...+....+++.|.++|.+..+.+ +.+..+|.-+..-+
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFE 861 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHH
Confidence 111111 122233 45677778888888888999999999999999843 22457888888999
Q ss_pred HhcCCcCcHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 005729 637 IRVDKFHKVPAVYEEMILSGCTPDR-KARAMLRSAL 671 (680)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~a~ 671 (680)
.+.|.-+.-.+++++... +.|.. ..|..+....
T Consensus 862 l~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKDI 895 (913)
T ss_pred HHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhhH
Confidence 999998999999998876 35543 3444444333
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=3.1e-13 Score=131.03 Aligned_cols=435 Identities=15% Similarity=0.125 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCCCChHHHHHHHHHHHh----CCCCcCHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVI-QSLTRTNKIDSSLLQKLYKEIEC----DKIELDGQLLN 269 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~~~~~~l~~~~~~----~~~~~~~~~~~ 269 (680)
+...|...|..+..+.+|+..|+-..+....|+...+..-+ +.+.+...+.. +.+.|.-... .+-...+.+.|
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fsk--aikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSK--AIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHH--HHHHHHHHHhhccccchhhHHHHHh
Confidence 34445667777788888888888887776666654332111 11222222222 2233332222 12223345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------CCHHH
Q 005729 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK------------PRTKA 337 (680)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------------p~~~~ 337 (680)
.+...+.+.|++++|+.-|+...+. .|+..+-..|+-++..-|+.+...+.|.+|+..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 7777788999999999999987764 688776666666667788999999999999764322 33333
Q ss_pred HHHHHH-----HHHHcCC--HHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCHHHH
Q 005729 338 YNALLK-----GYVKMGY--LKDAEFVVSEMERSGVLPDEHT-------------Y--------SLLIDAYANAGRWESA 389 (680)
Q Consensus 338 ~~~li~-----~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~-------------~--------~~li~~~~~~g~~~~A 389 (680)
.|..|. -.-+.+. .++++-.--+++.--+.|+-.. + -.-..-|.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 333222 1212111 1222211122222112222110 0 0112347789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005729 390 RIVLKEMEVSHAKPNSFIYSRILAGYRD--RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (680)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (680)
+++++-+.+..-+.-...-+.+-..+.- ..++..|.+.-+...... +-+......-.......|++++|.+.|.+.+
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999988776544333333333333322 346667776666654332 2333333333334456789999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT 547 (680)
Q Consensus 468 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 547 (680)
.....-....||. .-.+-..|++++|+++|-++... +..+......+.+.|....+..+|.+++.+.... ++.|+.+
T Consensus 518 ~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 6432222223332 23456788999999998876443 2345677777888888888999999988877664 4557889
Q ss_pred HHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h
Q 005729 548 YTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFG-E 603 (680)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~ 603 (680)
.+.|.+.|-+.|+-..|.++.- ...++++..|++..- +.|+..-|..++..|. +
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 9999999999999888877542 223344444443332 3444444444443332 2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
.|+++.|.++++...+. ++-|.....-|++.+...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 44555555555444432 3334444444444444444
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=8.9e-11 Score=124.17 Aligned_cols=356 Identities=12% Similarity=0.127 Sum_probs=267.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNL 215 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (680)
.|+++.|..++..+++++ |.+...|..|...|-..|+..++... ....+.|..-|-.+..-....|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 489999999999999998 77888999999999999999999765 566777889999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 005729 216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLND----VIVGFAKAGDASKAMRFLGMA 291 (680)
Q Consensus 216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~ 291 (680)
|.+..+.. +++...+---...|-+.|+... +...|.++.....+.|..-... .++.|...++-+.|.+.++..
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~--Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKR--AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHH--HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999875 2333333333446677887744 4477777776544444333333 355677778889999988877
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHH
Q 005729 292 QGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESG---------------------------LKPRTKAYNALLK 343 (680)
Q Consensus 292 ~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------~~p~~~~~~~li~ 343 (680)
...+ -..+...++.++..+.+..+++.|......+.... +.++..+ .-++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 6522 23455678899999999999999999888887622 2223333 12334
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 344 GYVKMGYLKDAEFVVSEMERSG--VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (680)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (680)
++......+....+.....+.+ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4455555555555666666655 33456788899999999999999999999999877667788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCChhH
Q 005729 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS--------EGIEPDTITWNTLIDCHFKCGRYDR 493 (680)
Q Consensus 422 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~g~~~~ 493 (680)
++|.+.|+...... +-+...-..|...+-+.|+.++|.+++..+.. .+..|+....-.....+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999988764 55667778888899999999999999998652 2234444444555667778888776
Q ss_pred HHHHHHHHH
Q 005729 494 AEELFEEMQ 502 (680)
Q Consensus 494 A~~~~~~m~ 502 (680)
=+..-..|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555444443
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=3.1e-10 Score=115.54 Aligned_cols=482 Identities=11% Similarity=0.048 Sum_probs=353.8
Q ss_pred CChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHH-hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFL-LSQRQRLTPLTYNALISACARNDDLEKALNLMSKM 219 (680)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (680)
...+.|..+.....++. |..+.+|-.-+..=.....-...+. ..+-.+.++..|-..+ .....+.|+-++.+.
T Consensus 329 hp~d~aK~vvA~Avr~~--P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rA 402 (913)
T KOG0495|consen 329 HPPDVAKTVVANAVRFL--PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERA 402 (913)
T ss_pred CChHHHHHHHHHHHHhC--CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHH
Confidence 34577888888888875 6666555433222111111111111 1444556667776544 445667788888888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhCC
Q 005729 220 RQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGM----AQGVG 295 (680)
Q Consensus 220 ~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g 295 (680)
.+. -|... -|..+|++...+ .-+++++....+ .++-+..+|-.-...--..|+.+...++.++ +...|
T Consensus 403 vec--cp~s~---dLwlAlarLetY--enAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng 474 (913)
T KOG0495|consen 403 VEC--CPQSM---DLWLALARLETY--ENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG 474 (913)
T ss_pred HHh--ccchH---HHHHHHHHHHHH--HHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc
Confidence 874 23321 123345555544 335678777765 4677888888888777888999998888764 45688
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (680)
Q Consensus 296 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 373 (680)
+..+...|..-...|-..|..-.+..+....+..|+.. ...||+.-...|.+.+.++-|..+|...++.- +.+...|
T Consensus 475 v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slW 553 (913)
T KOG0495|consen 475 VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLW 553 (913)
T ss_pred eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHH
Confidence 89999999999999999999999999999998877643 35689999999999999999999999998753 4467788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
...+..=-..|..++...+|++.... ++-....|....+.+-..|+...|..++....+.. +.+...|-.-+......
T Consensus 554 lra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 554 LRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcc
Confidence 88887777889999999999999875 34566777777888888999999999999988775 45778899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
.+++.|..+|.+.... .++...|.--+..-.-.+..++|.+++++.++.- +.-...|..+.+.+-+.++.+.|...|
T Consensus 632 ~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 632 DELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred ccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999998875 4777788777777777899999999999998872 444667888889999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAV 613 (680)
Q Consensus 534 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 613 (680)
..-.+. ++-....|..|.+.-.+.|.+-+|..+++.. +-. -+-+...|-..|.+-.+.|..+.|..+
T Consensus 709 ~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra-----------rlk-NPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 709 LQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA-----------RLK-NPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred Hhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH-----------Hhc-CCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 877664 3335677888888888999999999998711 110 112233555555555555555555554
Q ss_pred HHHHHHC-----------------------------CCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 614 LQYMKEN-----------------------------GLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 614 ~~~m~~~-----------------------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
+.++.+. ....|+.....+...+....++++|.+.|++.++.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4443321 03456666677777788888888999999988875
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1e-10 Score=123.63 Aligned_cols=476 Identities=14% Similarity=0.123 Sum_probs=290.5
Q ss_pred HHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC
Q 005729 170 IHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKID 245 (680)
Q Consensus 170 i~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 245 (680)
.+.+...|++++|..+ ....+.+...|.+|...|-..|+.++++..+-...... +-|..-|..+-.-..+.|.+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 3444445888888766 55666777888888888888888888888776555543 234456666666666677663
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHH
Q 005729 246 SSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTA----TYAAVITALSNSGRTIEAEA 321 (680)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~ 321 (680)
.|.-.|.+.+... +++....-.-+..|-+.|+...|++-|.++.....+.|.. .--.+++.+...++.+.|.+
T Consensus 225 --qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 --QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred --HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456777766653 3344444445567777788888888887777653211222 22234556666777777777
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--------------------------
Q 005729 322 VFEELKESG-LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS-------------------------- 374 (680)
Q Consensus 322 l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-------------------------- 374 (680)
.++.....+ -..+...++.++..|.+...++.+...+..+......+|..-|.
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 777766521 23355667777777888888888877777776654555554440
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005729 375 LLIDAYANAGRWESARIVLKEMEVSH--AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 452 (680)
-++-++......+....+........ +.-+...|.-+..+|.+.|++++|+.+|..+......-+...|..+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 12223333344444444444444444 3334556777777888888888888888887766555566777777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcC
Q 005729 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE--------RGYFPCTTTYNIMINLLGEQE 524 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~t~~~li~~~~~~g 524 (680)
.|..+.|.+.|+..+... +-+...--.|...+.+.|+.++|.+.++.+.. .+..|+..........+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888888888888777653 23444555666677778888888888777542 224445555555566667777
Q ss_pred CHHHHHHHHHHHHHCCC-----CC-----------------CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHH
Q 005729 525 RWEDVKRLLGNMRAQGL-----LP-----------------NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVM 582 (680)
Q Consensus 525 ~~~~A~~~~~~m~~~~~-----~p-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m 582 (680)
+.++-..+...|+.... -| ...+...++.+-.+.++......... .. ..+..-
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~----d~-~~~~~~ 615 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS----DG-TEFRAV 615 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc----ch-hhhhhh
Confidence 77765555555543210 00 11122223333333333222221111 00 111111
Q ss_pred HHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 583 RTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGL-KPDVV----TYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 583 ~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
...|+..+.. .+.-++.++++.+++++|+.+...+.+... .-+.. .-...+.+.+..+++..|..+++.|+..
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2223333332 456778899999999999999999886432 22332 2334556778899999999999999975
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.8e-12 Score=124.47 Aligned_cols=428 Identities=11% Similarity=0.063 Sum_probs=253.4
Q ss_pred HHHHHhcccCCHHHHHHh-----hCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH----H
Q 005729 168 ILIHALGRSEKLYEAFLL-----SQRQRLTP-LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ----S 237 (680)
Q Consensus 168 ~li~~~~~~g~~~~A~~~-----~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~ 237 (680)
.|..-|.......+|+.. ....-+|. ..--.+.+.+.+...+.+|+..|+.....-...+..+--.+++ .
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556556666666543 12222222 2222355667788888888888887766532223233222222 3
Q ss_pred HHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------------CCCHHHHHH
Q 005729 238 LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGL------------SPKTATYAA 305 (680)
Q Consensus 238 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------------~p~~~~~~~ 305 (680)
+.+.|++++++ .-|+.+.+. .|+..+--.|+-++...|+.++..+.|.+|...-. .|+....+-
T Consensus 286 fiq~gqy~dai--nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 286 FIQAGQYDDAI--NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred EEecccchhhH--hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 55678887754 677776654 56666555566666677888888888888764321 233333332
Q ss_pred HH-----HHHHhcCC--hHHHHHHHHHHHHcCCCCCHHH-------------H--------HHHHHHHHHcCCHHHHHHH
Q 005729 306 VI-----TALSNSGR--TIEAEAVFEELKESGLKPRTKA-------------Y--------NALLKGYVKMGYLKDAEFV 357 (680)
Q Consensus 306 li-----~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~-------------~--------~~li~~~~~~g~~~~A~~~ 357 (680)
.| .-.-+.+. .+.++-.-.+++.--+.|+-.. + ..-..-|.++|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 22 11111111 1122222222222112222110 0 1112246788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH------------------------------------HHcCCHHHHHHHHHHHHHCCC
Q 005729 358 VSEMERSGVLPDEHTYSLLIDAY------------------------------------ANAGRWESARIVLKEMEVSHA 401 (680)
Q Consensus 358 ~~~m~~~g~~~~~~~~~~li~~~------------------------------------~~~g~~~~A~~~~~~m~~~~~ 401 (680)
++-+.+..-+.-...-+.|...+ ...|++++|.+.|++.....-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 88877653221111111111111 123677788888877765432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL 481 (680)
Q Consensus 402 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 481 (680)
.-.. .+-.+.-.+-..|+.++|++.|-++... +..+..+...+...|-...+..+|.+++.+.... ++.|.....-|
T Consensus 522 sc~e-alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTE-ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHH-HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 2112 2222333456678888888888776432 2346667777778888888888888887766543 35577788888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC
Q 005729 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG-QSGR 560 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~ 560 (680)
...|-+.|+-..|++++-+--.. ++-+..+...|...|....-++++..+|++..- +.|+..-|-.++..|. +.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 88888888888888876654433 456777888888888888888899999888765 6788888887776554 5788
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
+.+|.+.|+ ...+. ++-|...+..|++.+...|- .++.++-+.+.
T Consensus 676 yqka~d~yk-----------~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 676 YQKAFDLYK-----------DIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHH-----------HHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 888777654 33332 55677788888888877664 34444444443
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-10 Score=114.23 Aligned_cols=386 Identities=14% Similarity=0.085 Sum_probs=266.9
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-
Q 005729 260 KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY- 338 (680)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~- 338 (680)
+...|...+-.....+.+.|....|++.|...... .+-.-..|..|..... +. +....+.. |.+.|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHh-cCcccchHHH
Confidence 44455555544455566677777777777665532 1223333433333221 11 11111111 122121111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q 005729 339 -NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGY 415 (680)
Q Consensus 339 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~ 415 (680)
--+..++-...+.+++.+-.......|+..+...-+....++-...++++|+.+|+++.+..+ --|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 123345555667888888888888888776666666666777788999999999999988743 23566777666443
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005729 416 RDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAE 495 (680)
Q Consensus 416 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 495 (680)
-.... +..+.+-...--+-.+.|+..+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|.
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 22221 1112111111113445678888889999999999999999999876 346778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 005729 496 ELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (680)
Q Consensus 496 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (680)
+-+++.++-. +.|-..|-.|.++|.-.+...-|+-.|++..+. +| |...|.+|.++|.+.++.++|+++|.+.
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykra--- 458 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRA--- 458 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHH---
Confidence 9999999986 788999999999999999999999999999984 55 8999999999999999999999887633
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCcCcHHHH
Q 005729 575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKPDV--VTYTTLMKALIRVDKFHKVPAV 648 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 648 (680)
...| ..+...|..|...|-+.++.++|..+|+.-++ .|...+. ....-|..-+.+.+++++|..+
T Consensus 459 --------i~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 459 --------ILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred --------Hhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 2222 33557899999999999999999999888765 3433332 2222355667899999999988
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHh
Q 005729 649 YEEMILSGCTPDRKARAMLRSALRYMKQ 676 (680)
Q Consensus 649 ~~~m~~~g~~pd~~~~~~l~~a~~~~k~ 676 (680)
......- .+..+.-++|.+-++....
T Consensus 530 a~~~~~~--~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 530 ATLVLKG--ETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHhcC--CchHHHHHHHHHHHHHhcC
Confidence 8877653 6666666777777765543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.6e-09 Score=104.02 Aligned_cols=460 Identities=14% Similarity=0.098 Sum_probs=281.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHH
Q 005729 189 QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (680)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (680)
...+...|...+..=.+++.+..|..++++....=...|..-|..+. .=-..|++ +.++++|+.... ..|+...|
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE~LgNi--~gaRqiferW~~--w~P~eqaW 177 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEEMLGNI--AGARQIFERWME--WEPDEQAW 177 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHHHhccc--HHHHHHHHHHHc--CCCcHHHH
Confidence 34555677777777777788888888888777653333433332221 22234555 345778877765 37888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES-GL-KPRTKAYNALLKGYV 346 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-~p~~~~~~~li~~~~ 346 (680)
++.|..-.+-+..+.|..++++..- +.|++.+|.-....-.++|....|..+|+...+. |- ..+...|++....-.
T Consensus 178 ~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 178 LSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887765 3588888888888888888888888888776653 10 112334444444445
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPD--EHTYSLLIDAYANAGRWESARIV--------LKEMEVSHAKPNSFIYSRILAGYR 416 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~~~~~~~~~ll~~~~ 416 (680)
++..++.|.-+|+-.++.= +.+ ...|..+...=-+-|+....... |+.+...+ +.|-.+|--.++.-.
T Consensus 256 ~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 5667777887777776642 212 33444444443444554433322 33333332 456667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----H---HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 005729 417 DRGEWQRTFQVLKEMKSSGVEPDT--HFYNVMID-----T---FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH- 485 (680)
Q Consensus 417 ~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~li~-----~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~- 485 (680)
..|+.+...++|+..... ++|-. ..|...|- + -....+.+.+.++|+..++. ++....||.-+--.|
T Consensus 334 ~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA 411 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYA 411 (677)
T ss_pred hcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHH
Confidence 778888888888887754 34421 11111111 1 13456777788888777763 233444544443333
Q ss_pred ---HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005729 486 ---FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFD 562 (680)
Q Consensus 486 ---~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 562 (680)
.++.++..|.+++...+. ..|...+|...|..=.+.++++.+..++.+.++.+.. +..+|......-...|+.+
T Consensus 412 ~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 412 QFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHH
Confidence 356777788877776543 4677777887777777888888888888888875422 6677777777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 005729 563 DAIECLEGLSDQAVNAFRVMRTD-GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALI---- 637 (680)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---- 637 (680)
.|..+|+ -..+. .+.-....|-+.|+.-...|.++.|..+++++.+. .+...+|.++..--.
T Consensus 489 RaRaife-----------lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 489 RARAIFE-----------LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHH-----------HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 7776654 22221 11222346777777777788888888888888763 334445555543222
Q ss_pred -hcC-----------CcCcHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHh
Q 005729 638 -RVD-----------KFHKVPAVYEEMILSG--CTPDRKARAMLRSALRYMKQ 676 (680)
Q Consensus 638 -~~g-----------~~~~A~~~~~~m~~~g--~~pd~~~~~~l~~a~~~~k~ 676 (680)
+.| ....|..+|++....- ..| ....-+|+.+.+.+..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~~E~ 607 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKNMEE 607 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHH
Confidence 223 3456677777665331 122 4455566666665544
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.2e-10 Score=111.22 Aligned_cols=361 Identities=13% Similarity=0.096 Sum_probs=260.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHH
Q 005729 187 QRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ 266 (680)
Q Consensus 187 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~ 266 (680)
.....|..-+......+.+.|...+|+..|...... -+..|.+-+...--..+. ...... ..+.+.|..
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~------e~~~~l-~~~l~~~~h 226 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDI------EILSIL-VVGLPSDMH 226 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchH------HHHHHH-HhcCcccch
Confidence 344556666677777788899999999999887753 233344333221111111 111111 122232211
Q ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 005729 267 LL--NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPRTKAYNALL 342 (680)
Q Consensus 267 ~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li 342 (680)
.+ --+..+|-...+.+++++-.+.....|+.-+...-+....+.....++++|+.+|+++.+... --|..+|..++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 11 123445666678888988888888888766655555556666778899999999999998742 13778888776
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 343 KGYVKMGYLKD-AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (680)
Q Consensus 343 ~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (680)
-.--...++.- |..++ .+- +--+.|+.++.+-|.-.++.++|...|+...+.+. .....|+.+..-|...++.
T Consensus 307 Yv~~~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHhhhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhccc
Confidence 54333222221 12111 122 22456788888999999999999999999988753 4567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005729 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 422 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (680)
..|.+-++...+.. +.|-..|-.|..+|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|++.|.+.
T Consensus 381 ~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999998875 7788999999999999999999999999998875 568899999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 005729 502 QERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLPN--VVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 502 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
...| ..+...+..|.+.+-+.++.++|.+.+.+-++. |...+ .....-|..-+.+.+++++|...
T Consensus 459 i~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 459 ILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred Hhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 9887 456789999999999999999999999887652 33322 22223355667788888887653
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=4.3e-11 Score=124.86 Aligned_cols=280 Identities=13% Similarity=0.117 Sum_probs=214.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 005729 278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYN--ALLKGYVKMGYLKDAE 355 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~ 355 (680)
.|++++|.+......+..-. ....|........+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 59999999888776553211 1233444455558899999999999999875 45543332 3467888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 005729 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-------FIYSRILAGYRDRGEWQRTFQVL 428 (680)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~l~ 428 (680)
..++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 336788889999999999999999999999987654322 13333344444455566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005729 429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (680)
Q Consensus 429 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (680)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .++... .++.+.+..++.+++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 665433 2567888899999999999999999999999874 445422 23444456699999999999998875 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 509 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.++++
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777889999999999999999999999984 6899999999999999999999988876
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=8.2e-11 Score=122.75 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=132.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 005729 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
.+.|+++.|.+.+.++.+................+...|+++.|.+.++++.+.. +-+......+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555443211111111122344455555555555555555443 334445555555555555555555
Q ss_pred HHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 461 AAFDRMLSEGIEPDT-------ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 461 ~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
+++..+.+.+..++. ..|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|..++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555544322111 12222222223333444555555554333 2345666666667777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 005729 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFA 612 (680)
Q Consensus 534 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~ 612 (680)
.+..+. .++.... ++.+....++.+++.+.++ ...+ ..|+. ..+.++...|.+.+++++|.+
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e-----------~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLR-----------QQIK--QHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHH-----------HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 766663 3343221 2222334466666555543 2222 12333 356667777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 613 VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 613 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
.|+.+.+ ..|+..++..+..++.+.|+.++|.++|++-+.
T Consensus 350 ~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 350 AFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776 457777777777777777777777777776543
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.6e-09 Score=102.75 Aligned_cols=441 Identities=13% Similarity=0.118 Sum_probs=323.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHH
Q 005729 189 QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (680)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (680)
...+...|--....=...+++..|..+|++....+ ..+...|...+..=.++..+. -|+.+++..+..- +.-...|
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vN--hARNv~dRAvt~l-PRVdqlW 144 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVN--HARNVWDRAVTIL-PRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHh--HHHHHHHHHHHhc-chHHHHH
Confidence 34455677777776777889999999999998764 345555555555555556553 3578888876542 2233456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 348 (680)
-..+.+--..|++..|.++|++-.+. .|+...|++.|+.-.+-+.++.|..+|++..-. .|++.+|--....-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 66677777889999999999998885 899999999999999999999999999998863 69999999999999999
Q ss_pred CCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 005729 349 GYLKDAEFVVSEMERS-GV-LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN-SFIYSRILAGYRDRGEWQRTF 425 (680)
Q Consensus 349 g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~ 425 (680)
|+...+..+|....+. |- .-+...+.+....=.++..++.|.-+|+-....-++.. ...|......--+-|+.....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999988753 21 11233444445545567788899999988876532221 345555554445556654443
Q ss_pred HH--------HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHH
Q 005729 426 QV--------LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT--ITWNTLID--------CHFK 487 (680)
Q Consensus 426 ~l--------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~--------~~~~ 487 (680)
+. |+.+.+.+ +-|-.+|--.+..-...|+.+...++|++....- +|-. ..|...|. .=..
T Consensus 301 d~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 33444443 6677888888888888899999999999998653 3321 12222222 1135
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005729 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLL----GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (680)
..+.+.+.++|+..++. ++....||..+--.| .++.++..|.+++...+ |..|...+|...|..-.+.+++|.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence 78899999999999884 455667776655444 46788999999999887 467889999999999999999998
Q ss_pred HHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC
Q 005729 564 AIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKENG-LKPDVVTYTTLMKALIRVDK 641 (680)
Q Consensus 564 A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~ 641 (680)
...+++.. .+ ..|.. .+|......-...|+.+.|..+|+-++... +......|.+.|+--...|.
T Consensus 456 cRkLYEkf-----------le--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 456 CRKLYEKF-----------LE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHH-----------Hh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 88876643 33 34544 588888888888999999999999998743 22234577777777788999
Q ss_pred cCcHHHHHHHHHHc
Q 005729 642 FHKVPAVYEEMILS 655 (680)
Q Consensus 642 ~~~A~~~~~~m~~~ 655 (680)
+++|..+|+++++.
T Consensus 523 ~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 523 FEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=8.4e-11 Score=123.38 Aligned_cols=289 Identities=8% Similarity=-0.027 Sum_probs=152.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 348 MGYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ 426 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 426 (680)
.|+++.|.+.+.+..+.. |+ ...+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345555555554444331 22 222222334444445555555555554433222111222223444445555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHHcCChhHHHHHHHHHH
Q 005729 427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN-TLID---CHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 427 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~---~~~~~g~~~~A~~~~~~m~ 502 (680)
.++.+.+.. +-+......+...+...|+++.|.+.+..+.+.+.. +...+. .-.. ++...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555443 334444555555555555555555555555554422 222221 1111 1122222222333444443
Q ss_pred HCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHhhhHHHHHH
Q 005729 503 ERG---YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY--GQSGRFDDAIECLEGLSDQAVN 577 (680)
Q Consensus 503 ~~~---~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~a~~ 577 (680)
+.. .+.+...+..+...+...|+.++|.+++++..+.........+ .++..+ ...++.+.+.+.++
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e-------- 323 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIE-------- 323 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHH--------
Confidence 331 1236677777777888888888888888888775322111111 122222 22345554444432
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 578 AFRVMRTDGLKPSN---LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 578 ~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
+..+ ..|+. ....++.+.|.+.|++++|.++|+........||...+.++...+.+.|+.++|.++|++.+.
T Consensus 324 ---~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 ---KQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ---HHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 23443 456788999999999999999999544333678998888999999999999999999998653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1.1e-13 Score=137.78 Aligned_cols=262 Identities=17% Similarity=0.174 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005729 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSP-KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (680)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 348 (680)
.+...+.+.|++++|+++++.......+| |..-|..+.......+++++|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566777888888888885544332123 3444555566666778888888888888776432 55566666666 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 349 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~l 427 (680)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888877766554 2455666777777888888888888888766432 245666777777777888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 005729 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF 507 (680)
Q Consensus 428 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 507 (680)
+++..+.. +.|......++..+...|+.+++..++....+.. +.|...|..+..+|...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88877653 3356677777777777777777777777666543 3445566777777777788888888887777654 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 508 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.|......+..++.+.|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5677777777777777877777777766543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=1e-10 Score=122.67 Aligned_cols=289 Identities=13% Similarity=0.061 Sum_probs=209.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 276 AKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (680)
...|+++.|.+.+....+. .|+ ...+-.......+.|+.+.|.+.+.+..+....++....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887765 344 3445556678888999999999999987653222233444457888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHH
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG---YRDRGEWQRTFQVLKEM 431 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~l~~~m 431 (680)
...++.+.+.. +-+...+..+...|...|++++|.+++..+.+.+..........-..+ ....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999876 336778889999999999999999999999988654333221111111 12333333334455554
Q ss_pred HHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 432 KSSG---VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT---WNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 432 ~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4432 12378888999999999999999999999999864 33321 1222222334577888999998888763
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 005729 506 YFPCT--TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG 570 (680)
Q Consensus 506 ~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 570 (680)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444 566788999999999999999999644444578988899999999999999999988763
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2.3e-13 Score=135.58 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=102.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 375 LLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
.+...+.+.|++++|++++++..... .+.+...|..+.......++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667777788888888886544333 23344555556666667788888888888887665 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRL 532 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~ 532 (680)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 556667788888888999999999998876542 345677788888888899999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 533 LGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAF 611 (680)
Q Consensus 533 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 611 (680)
+++.++. .| |......++..+...|+.+++.++++.... - ...|...|..+..+|...|+.++|+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--------~----~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLK--------A----APDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------H-----HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--------H----CcCHHHHHHHHHHHhcccccccccc
Confidence 9999885 34 577888888899989988887766542221 1 1234456788899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 612 AVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 612 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
.++++..+.. +.|+.+...+.+++.+.|+.++|.+++++..+
T Consensus 235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccc
Confidence 9999988732 33778888899999999999999998887654
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.9e-10 Score=110.03 Aligned_cols=229 Identities=12% Similarity=0.088 Sum_probs=157.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 005729 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (680)
Q Consensus 414 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 493 (680)
.+.-.|+...|..-|+....... .+...|..+..+|....+.++.++.|+...+.. +-+..+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 34556777788888888776642 223337777778888888888888888887765 3356667666777777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 005729 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573 (680)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 573 (680)
|..=|++.+... +.+...|..+.-+..+.+++++++..|++.++. ++.-+.+|+-....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888888887765 555666777766777888888888888888876 555678888888888888888888877652221
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHH
Q 005729 574 QAVNAFRVMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYE 650 (680)
Q Consensus 574 ~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 650 (680)
+=. .++++..+.. +--.++..-. .+++..|+.++++..+ +.|- ...|.+|.....+.|+.++|+++|+
T Consensus 491 ----LE~--~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 491 ----LEP--REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ----hcc--ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 100 0011111121 1122222222 3888889998888887 4553 4578888888888999999999988
Q ss_pred HHHHc
Q 005729 651 EMILS 655 (680)
Q Consensus 651 ~m~~~ 655 (680)
+....
T Consensus 562 ksa~l 566 (606)
T KOG0547|consen 562 KSAQL 566 (606)
T ss_pred HHHHH
Confidence 87654
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.5e-09 Score=107.70 Aligned_cols=498 Identities=11% Similarity=0.018 Sum_probs=310.1
Q ss_pred ChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005729 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL---SQRQRLTPLTYNALISACARNDDLEKALNLMSK 218 (680)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (680)
.+..|.-+-.++...+..|.+ ---+..+|.--|++..|..+ ......|..+..-....+.+..++++|+.++.+
T Consensus 31 ~y~~a~f~adkV~~l~~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLTNDPAD---IYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred hhhHHHHHHHHHHhccCChHH---HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455455555444422222 23355566666666666554 445567788888889999999999999999874
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005729 219 MRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP 298 (680)
Q Consensus 219 m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 298 (680)
-.. .-+.+.|...=. .+..+...+. ++. ++......+-.--..|......++|.+.|.+... .
T Consensus 108 ~~~---~~~~f~yy~~~~----~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~ 170 (611)
T KOG1173|consen 108 GHV---ETNPFSYYEKDA----ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKYKEALL----A 170 (611)
T ss_pred cch---hhcchhhcchhh----hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHHHHHHh----c
Confidence 311 112222110000 0000000000 000 0011111111111235555667788888877664 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGL----KPRTKAYNALLKGY-VKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 373 (680)
|...|..+...-... .-.+.+.|+.+..... ..+......+.... ++..+ ++....-.+-.-.+..-+....
T Consensus 171 D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred chhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHH
Confidence 444443332221111 1111122222222111 11222222222211 11110 0111111101111233456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
....+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-+.+=.+|.+.- +....+|-++.--|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 677778888999999999999998764 5666677777789999999888888888888763 66778999999999889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
|...+|++.|.+..... +.=...|-....+|+-.|..|+|+..+....+.- +-....+--+.--|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999876543 1224578899999999999999999998876541 112223333444577889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAV 613 (680)
Q Consensus 534 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 613 (680)
.+.... .+.|+.+++-+.-...+.+.+.+|...|+... ...+......+ --..+++.|.++|.+.+++++|+..
T Consensus 404 ~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l----~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 404 KQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKAL----EVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHH----HHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHH
Confidence 998874 23378889999888888999999998887433 22222222111 1334789999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Q 005729 614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK-ARAMLRSALRYMK 675 (680)
Q Consensus 614 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~l~~a~~~~k 675 (680)
+++.... .+-|..++.++.-.|...|+++.|.+.|.+.+. +.||.. +..+|..|++.++
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhhh
Confidence 9999984 244888999999999999999999999999886 689984 5566666766643
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.4e-10 Score=103.91 Aligned_cols=275 Identities=16% Similarity=0.157 Sum_probs=212.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHH
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP---RTKAYNALLKGYVKMGYLKD 353 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~ 353 (680)
-.++.++|++.|-+|.+.. +-+..+--+|.+.|-+.|..+.|+++.+.+.++.--+ .....-.|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999998742 2234456688899999999999999999998752111 12234566777889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAGYRDRGEWQRTFQVLK 429 (680)
Q Consensus 354 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~l~~ 429 (680)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998764 335667788999999999999999999999887655543 356667777777889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005729 430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC 509 (680)
Q Consensus 430 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 509 (680)
+..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+.. +.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 988764 334445556678889999999999999999988655556678899999999999999999999998874 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS 558 (680)
Q Consensus 510 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 558 (680)
...-..+...-....-.+.|...+.+-+.. +|+...+..+++.-..-
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcc
Confidence 444455555555555567777777666654 68999999999876543
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=8.3e-10 Score=103.56 Aligned_cols=289 Identities=16% Similarity=0.153 Sum_probs=136.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 005729 313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE------HTYSLLIDAYANAGRW 386 (680)
Q Consensus 313 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 386 (680)
+++.++|.++|-+|.+.. +....+--+|.+.|-+.|..+.|+.+.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 355666666666666532 223334445556666666666666666666553 221 1223344445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005729 387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (680)
Q Consensus 387 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (680)
|.|+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+-.+...- +
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---I-------------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---I-------------------- 179 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---H--------------------
Confidence 55555555554332 12233344444445444555555544444444332211100 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 467 LSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV 546 (680)
Q Consensus 467 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 546 (680)
...|..+...+....+.++|..++.+..+.+ +-++..--.+.+.....|+++.|.+.++...+.+..--..
T Consensus 180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 180 --------AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 1123334444444555666666666655543 3333333344455556666666666666666654433445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005729 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV 626 (680)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 626 (680)
+...|..+|.+.|+.++....+. .+.+. .+....-..+...-....-.+.|..++.+-.. -+|+.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~-----------~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~ 315 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLR-----------RAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTM 315 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-----------HHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcH
Confidence 55666666666666665555433 22221 12222222222222223334444444333333 25666
Q ss_pred HHHHHHHHHHHh---cCCcCcHHHHHHHHH
Q 005729 627 VTYTTLMKALIR---VDKFHKVPAVYEEMI 653 (680)
Q Consensus 627 ~~~~~l~~~~~~---~g~~~~A~~~~~~m~ 653 (680)
..+..++..-.. .|..++-...+++|+
T Consensus 316 ~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 316 RGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 666666654432 233444455555554
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-09 Score=107.99 Aligned_cols=404 Identities=13% Similarity=0.026 Sum_probs=259.8
Q ss_pred hhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 137 CSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKA 212 (680)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A 212 (680)
|-+.+.++.|...+.|++... |..+..|+.+..+|..-|++.+..+. .+..+.-+.+++.-.+++-..|++++|
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHH
Confidence 346789999999999999874 66578899999999999999998876 333333345677777788888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHc--------CC-H
Q 005729 213 LNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDK--IELDGQLLNDVIVGFAKA--------GD-A 281 (680)
Q Consensus 213 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~--~~~~~~~~~~li~~~~~~--------g~-~ 281 (680)
+.=..-.--.|-.-|..+-..+=+.+-+.+. ...-+.+.+++ +-|.....++....+... ++ -
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~------~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAM------KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHH------HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 7543332222111222222111112222111 11122222222 234443333333322110 00 1
Q ss_pred ----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHH
Q 005729 282 ----SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES---GLKP---R------TKAYNALLKGY 345 (680)
Q Consensus 282 ----~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p---~------~~~~~~li~~~ 345 (680)
.++++.+..-.. ..+..|.+.+.+-... .... | ..+.+.-...+
T Consensus 277 Da~l~~~l~~l~~~~~--------------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--------------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred hhhHHHHHHHHHhhCc--------------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 111111111110 1122233322221110 0000 1 12222222334
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 425 (680)
.-.|+...|..-|+..+.....+ ...|--+...|....+.++..+.|.+....+. .+..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 55789999999999999875443 33377888899999999999999999987763 46677777778888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 426 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
.=|++..... +.+...|..+..+..+.+.+++++..|++..+. ++.-+..|+.....+...+++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999988775 556777888888888999999999999999876 35567789999999999999999999999987642
Q ss_pred -----CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 005729 506 -----YFPCTTTYNI-MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573 (680)
Q Consensus 506 -----~~p~~~t~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 573 (680)
+..+..++.. -+-.+.-.+++..|..++.+..+.+.+ ....|..|...-.+.|++++|+++|+....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222222211 111222458999999999999985433 467899999999999999999999874443
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=2.1e-09 Score=104.18 Aligned_cols=294 Identities=15% Similarity=0.145 Sum_probs=159.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV 392 (680)
Q Consensus 313 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (680)
.|++..|+++..+-.+.+-. ....|..-..+--..|+.+.+..++.+.-+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776655432 23344444555566677777777777776653344556666666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 005729 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE 472 (680)
Q Consensus 393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 472 (680)
++++.+.+ +-+.........+|.+.|+|.....++..|.+.|.-.+...- .
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~ 226 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------R 226 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------H
Confidence 77766654 235556666677777777777777777777766643332110 0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
....+|+.+++-....+..+.-...+++...+ .+.++..-..++.-+.+.|+.++|.++..+..+.+..|. ...+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~- 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL- 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-
Confidence 01123333333333333333333344443322 133344444455555555555555555555555544443 1111
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTL 632 (680)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 632 (680)
-.+.+-++...-++..+ +.....+..| ..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|..+
T Consensus 302 ~~~l~~~d~~~l~k~~e----------~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~l 367 (400)
T COG3071 302 IPRLRPGDPEPLIKAAE----------KWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAEL 367 (400)
T ss_pred HhhcCCCCchHHHHHHH----------HHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHH
Confidence 11223333333222222 1222223333 4566666666666666666666665555 45666666666
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHc
Q 005729 633 MKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 633 ~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
..++.+.|+..+|.+..++.+..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 66666666666666666665533
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1e-10 Score=119.99 Aligned_cols=202 Identities=17% Similarity=0.107 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (680)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 518 (680)
.+.+|.++..+|.-.++.+.|++.|++..+.. +....+|+.+..-+.....+|+|...|+..+... +-+-..|..+.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhh
Confidence 34444444444444444444444444444432 1134444444444444455555555554443322 111223333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 005729 519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSL 597 (680)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 597 (680)
.|.+.++++.|+-.|+++.+-+.. +.+....+...+.+.|+.|+|+++++. | .. +.|.. ..--..
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~----A-------~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEK----A-------IH--LDPKNPLCKYHR 563 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHH----H-------Hh--cCCCCchhHHHH
Confidence 445555555555555555443211 344444455555555555555555431 1 11 11111 111122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCC
Q 005729 598 INAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCT 658 (680)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 658 (680)
+..+...+++++|+..++++++ +.|+ ...|..+...|-+.|+.+.|+.-+.-|.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3334445666666666666666 4443 345555556666666666666666655554333
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=3.2e-09 Score=102.86 Aligned_cols=282 Identities=14% Similarity=0.125 Sum_probs=228.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFV 357 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 357 (680)
.|++.+|.+...+-.+.+-. ....|..-..+--+.|+.+.+-+.+.+..+..-.++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 59999999999988877633 35567777788889999999999999998864466778888888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 358 VSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF-------IYSRILAGYRDRGEWQRTFQVLKE 430 (680)
Q Consensus 358 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~g~~~~A~~l~~~ 430 (680)
++++.+.+. .+.........+|.+.|++.+...++.++.+.+.-.+.. +|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 999988764 367888999999999999999999999999988765543 677777777666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005729 431 MKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT 510 (680)
Q Consensus 431 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 510 (680)
.... .+.++..-.+++.-+.++|+.++|.++..+..+.+..++.. ..-.+.+-++...-++..+.-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 24566777788899999999999999999999887666522 2234556777777777777766542 4556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 511 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
-.+.++...|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 8888999999999999999999998887 57899999999999999999999988765
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=4.9e-07 Score=92.67 Aligned_cols=457 Identities=12% Similarity=0.151 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQD-GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~ 273 (680)
.|-..+..+.++|++..-...|++.... .+.-....|...+.-....+-.. .+..+++.-.+ .+...-+.-|.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPe--ts~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPE--TSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChH--HHHHHHHHHHh----cCHHHHHHHHH
Confidence 5555555555555555555555554432 22223334444444333333321 12244444332 23333445555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCC--HHHHHHHH
Q 005729 274 GFAKAGDASKAMRFLGMAQGVG------LSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLKPR--TKAYNALL 342 (680)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p~--~~~~~~li 342 (680)
.+++.+++++|.+.+....... .+.+-..|.-+.+..+++-+.-. ...+++.+... -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 5555566666555554443211 12233344444444444333221 22223332221 122 23455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHCC
Q 005729 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG----------------------RWESARIVLKEMEVSH 400 (680)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~~ 400 (680)
+.|.+.|.++.|..+|++.... ..++.-++.+.+.|+.-. +++-.+.-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 6666666666666666555443 122333333333333211 1112222233322211
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHHH
Q 005729 401 -----------AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP------DTHFYNVMIDTFGKYNCLHHAMAAF 463 (680)
Q Consensus 401 -----------~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~ 463 (680)
-+.++..|..-+..+ .|+..+-...|.+..+. +.| -...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 122333444333332 44555566666665543 122 1245677777788888888888888
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-----------CCC------CHHHHHHHHHHHHhc
Q 005729 464 DRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQERG-----------YFP------CTTTYNIMINLLGEQ 523 (680)
Q Consensus 464 ~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p------~~~t~~~li~~~~~~ 523 (680)
++..+...+.- ..+|..-...=.++.+++.|+++.++..... .++ +...|...++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 87776533211 2344444555556677777877777654321 111 223455555555566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh----------------------------hhHHHH
Q 005729 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE----------------------------GLSDQA 575 (680)
Q Consensus 524 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----------------------------~~~~~a 575 (680)
|-++....+++++++..+. ++.+.......+....-++++.++|+ ...+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7777777888887776543 34444444444445555666666655 224556
Q ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcCcHHHHHHH
Q 005729 576 VNAFRVMRTDGLKPSNLA--LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV--VTYTTLMKALIRVDKFHKVPAVYEE 651 (680)
Q Consensus 576 ~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 651 (680)
..+|++..+ |++|...- |-.....--+.|-...|+.++++.-. ++++.. ..|+..|.--...=-.....++|++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 666666665 55555432 22222222234666666666666543 233322 3455544322222224555666666
Q ss_pred HHHcCCCCCHHHHHHHHH
Q 005729 652 MILSGCTPDRKARAMLRS 669 (680)
Q Consensus 652 m~~~g~~pd~~~~~~l~~ 669 (680)
.++. -||.....+.++
T Consensus 648 aIe~--Lp~~~~r~mclr 663 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLR 663 (835)
T ss_pred HHHh--CChHHHHHHHHH
Confidence 6663 566665555444
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1.5e-09 Score=114.49 Aligned_cols=273 Identities=15% Similarity=0.199 Sum_probs=192.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005729 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (680)
+++-.|...|+.|+.+||..+|..||..|+.+.+ -+|..|..+..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaa---tif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAA---TIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccc---cchhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 3556677788889888999998888888888654 27888887777888888888888888888877664
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHH
Q 005729 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME-RSGVLPDEHT 372 (680)
Q Consensus 294 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~ 372 (680)
.|...||..|..+|...|++.. ++..++ ..-.+...+...|.-..-..++..+. ..+.-||..+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 5778888999999999988765 222222 11223344555555555555554432 2233444433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDR-GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF 450 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 450 (680)
.+......|-|+.+++++..+....- .|..+ .++-+... ..+++-....+...+ .|++.+|..+++.-
T Consensus 145 ---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 145 ---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 45556677888888888766643211 11111 23333222 223333333333332 69999999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (680)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 525 (680)
.-.|+++.|..++.+|.+.|++.+..-|-.|+-+ .++..-+..+...|.+.|+.|+..|+...+..+..+|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999888888888766 78888899999999999999999999988888887655
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=7.2e-10 Score=113.94 Aligned_cols=264 Identities=9% Similarity=0.044 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCCHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVF-EELKESGLKPRTKAYNALL 342 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~~~~~li 342 (680)
.+...+..+|...+++++|.++|+.+.+.. ...+...|.+.+.-+-+. -++..+ +.+.+. -+-...+|.++.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 455555566666666666666666665432 012344454444332111 111111 222222 123445666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (680)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (680)
++|.-+++.+.|++.|++..+.+. ....+|+.+.+-+.....+|.|...|+....... .+-..|-.+.-.|.+.++++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhh
Confidence 666666666666666666665431 1456666666666666666666666665543211 12223344555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 423 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
.|+-.|.+..+.+ +.+.+....+...+-+.|+.++|+.++++..... +.|+..--..+..+...+++++|+..++++.
T Consensus 507 ~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 507 FAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 6666666665554 4445555555556666666666666666665544 2233333344445555666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 503 ERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 503 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+.- +-+...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 585 ~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 585 ELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 542 333445555556666666666666666655554
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=5.1e-09 Score=110.50 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKEN--GLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
..|..||+-+..+.+.+.|..+.++.... .+..|..-+..+.+.+.+.+....+..+++++.+.
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 35788889899999999999988887642 23446667888889999999999999999998864
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.7e-07 Score=90.99 Aligned_cols=249 Identities=14% Similarity=0.155 Sum_probs=162.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 401 AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN 479 (680)
Q Consensus 401 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 479 (680)
++-|......+.+.+...|+.++|...|++....+ |+. .......-.+.+.|+.+....+...+.... +-+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 44556666777777777777777777777765432 221 111112222345566666666666555432 12333444
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQS 558 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 558 (680)
.-.......++++.|+.+-++.++.+ +-+...|-.-...+...|+.++|.-.|+..+.. .| +...|..|+..|...
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhh
Confidence 44444555667777777777666554 334455555555666777777777777766653 33 566777777777777
Q ss_pred CChHHHHHHHh-------------------------hhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 005729 559 GRFDDAIECLE-------------------------GLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFA 612 (680)
Q Consensus 559 g~~~~A~~~~~-------------------------~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~ 612 (680)
|++.+|.-.-+ ..-++|.+++++-.+ +.|+.. ..+.+...|...|+.++++.
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 77776654332 223455555554443 567654 67788888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCH
Q 005729 613 VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDR 661 (680)
Q Consensus 613 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 661 (680)
+++.... ..||....+.|.+.+...+.+.+|.+.|...++. .|..
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 9999988 6899999999999999999999999999999874 4444
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=5e-07 Score=92.94 Aligned_cols=434 Identities=13% Similarity=0.113 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~ 273 (680)
..|..++..| ..+++.+.+.+.+...+. ..-...|....--.++..|+.+++ ......-.. +-..+.++|..+.-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea--~~~vr~glr-~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEA--YELVRLGLR-NDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHH--HHHHHHHhc-cCcccchhHHHHHH
Confidence 3445555544 567888888888887763 222223332222234455555433 232222222 23446688998888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (680)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (680)
.+....++++|++.|......+ +-|...|.-+--.-++.|+++........+.+.. +.....|..+..++.-.|+...
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999998864 4456777777777788888888888888877653 3355678888888889999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 005729 354 AEFVVSEMERSG-VLPDEHTYSLLI------DAYANAGRWESARIVLKEMEVSHAKPNSF-IYSRILAGYRDRGEWQRTF 425 (680)
Q Consensus 354 A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~ 425 (680)
|..++++..+.. -.|+...+.-.. ....+.|..++|++.+..-... ..|.. .-..-...+.+.++.++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 999999988654 245655554332 3455678888888877665432 12322 2334556788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHH
Q 005729 426 QVLKEMKSSGVEPDTHFYNVM-IDTFGKYNCLHHAM-AAFDRMLSEGIEPDTITWNTL-IDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 426 ~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 502 (680)
.++..+... .||..-|... ..++.+..+.-++. .+|....+.- |....-..+ +.......-.+..-+++..+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 999999887 4666555544 44554333333444 6666665431 111111111 111111222344556777788
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC------------CCCHH--HHHHHHHHHHhcCChHHHHH
Q 005729 503 ERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GL------------LPNVV--TYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 503 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~------------~p~~~--~~~~li~~~~~~g~~~~A~~ 566 (680)
++|+++ ++..+...|-.-...+-..++...+... |- +|... ++-.++..|-+.|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 888654 3444444443333333223333333221 11 34433 44567788999999999998
Q ss_pred HHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcH
Q 005729 567 CLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKV 645 (680)
Q Consensus 567 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 645 (680)
.+++.++ ..|+.+ -|..-.+.+.+.|++++|..++++..+.. .+|..+-..-+.-..++.+.++|
T Consensus 393 yId~AId-------------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 393 YIDLAID-------------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHHHhc-------------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 8764332 467765 77777889999999999999999999864 45666655777778899999999
Q ss_pred HHHHHHHHHcCC
Q 005729 646 PAVYEEMILSGC 657 (680)
Q Consensus 646 ~~~~~~m~~~g~ 657 (680)
.++.....+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999998888774
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.6e-11 Score=85.85 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 005729 191 LTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTR 240 (680)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 240 (680)
||.++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=9.8e-09 Score=106.81 Aligned_cols=244 Identities=20% Similarity=0.271 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC--
Q 005729 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSS-----G-VEPDTH-FYNVMIDTFGKYNCLHHAMAAFDRMLSE-----GI-- 471 (680)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-- 471 (680)
.+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+.+++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666654432 1 122222 2234667778888888888888877642 21
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 005729 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER-----GY-FPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQ---GL 541 (680)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 541 (680)
+.-..+++.|...|++.|++++|..++++..+- |. .|.+ ..++.+...|+..+++++|..++.+..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112346777888899999999988888776532 21 2222 23556677788899999999999877653 12
Q ss_pred CCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 542 LPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 542 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (680)
.++ ..+++.|...|.+.|++++|.++++. |+...+........-....++.|...|.+.+++.+|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~----ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKK----AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHH----HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 222 46899999999999999999988873 3333333322212222347889999999999999999998876
Q ss_pred HH----CCC-CCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 618 KE----NGL-KPD-VVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 618 ~~----~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
.. .|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 53 332 233 3588899999999999999999988877
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=1.3e-08 Score=98.30 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK 327 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 327 (680)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444443321 1122333333344444444444444444433
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=1.1e-06 Score=90.59 Aligned_cols=454 Identities=13% Similarity=0.086 Sum_probs=271.9
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (680)
..+.+..++.+...+++.. +....+.....-.+...|+-++|... ......+.+.|..+.-.+...+++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4455556666666666632 44456677777778888999999776 55666778999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005729 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (680)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (680)
.|+.....+ +-|...+.-+--.-...+++.... ..-....+ -.+.....|..++.++.-.|+...|..+.+...+.
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~--~tr~~LLq-l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL--ETRNQLLQ-LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH--HHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999875 233344433322223334332111 11111111 11335567888888888999999999999888765
Q ss_pred C-CCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005729 295 G-LSPKTATYAAV------ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL 367 (680)
Q Consensus 295 g-~~p~~~~~~~l------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 367 (680)
. -.|+...|.-. .....+.|..++|.+.+..-... +......-..-...+.+.+++++|..++..++.. .
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 4 24565554433 24556778888888877665432 2112222344556788999999999999999987 4
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHH
Q 005729 368 PDEHTYSLLI-DAYANAGRWESAR-IVLKEMEVSHAKPNSFIYSRILAGYRDRGEW-QRTFQVLKEMKSSGVEPDTHFYN 444 (680)
Q Consensus 368 ~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~l~~~m~~~~~~p~~~~~~ 444 (680)
||..-|.... .++.+-.+.-++. .+|....+.- |.......+-........+ +..-.++..+.+.|+++-. .
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~ 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---K 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---h
Confidence 6666665554 4443344444444 6666655431 1111111111111111222 3334566667777865532 3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH----HCC----------CCCCHHHHH--HHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005729 445 VMIDTFGKYNCLHHAMAAFDRML----SEG----------IEPDTITWN--TLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (680)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (680)
.+...|-.-...+-..++.-.+. ..| -+|....|. -++..|-+.|+++.|..+++...++ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 33333322111111111111111 111 145555554 4677888999999999999999887 35
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH---HHHHHHHHHHH
Q 005729 509 CT-TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD---QAVNAFRVMRT 584 (680)
Q Consensus 509 ~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~a~~~~~~m~~ 584 (680)
+. ..|..-.+.+...|+.++|..++++..+.+ .+|...-.--+.-..++.+.++|.++...... .|..-+..|.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mq- 480 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQ- 480 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhh-
Confidence 43 445566688899999999999999998864 34666555667777788888888877542221 1122222222
Q ss_pred CCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 005729 585 DGLKPSNLALNSL--INAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 585 ~g~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m 617 (680)
-+|-.+ ..+|.+.|++.+|++=|...
T Consensus 481 -------cmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 481 -------CMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred -------hHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 123222 35567777777776655544
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=1.7e-08 Score=97.46 Aligned_cols=199 Identities=14% Similarity=0.052 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (680)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (680)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233444444555555555555555555544432 11333444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 005729 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
...|++++|.+.+++....... ......+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLY----------------------------------PQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccc----------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555544444432110 111223333344444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 461 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
..+.+..+.. +.+...+..+...+...|++++|..++++..+.. +.+...+..+...+...|+.++|..+.+.+.
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 156 KYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444332 1123344444445555555555555555544431 2333444444444444555555555444443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=1.2e-08 Score=111.40 Aligned_cols=216 Identities=13% Similarity=0.023 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005729 280 DASKAMRFLGMAQGVGLSPK-TATYAAVITALS---------NSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG 349 (680)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 349 (680)
+.++|++.|++..+. .|+ ...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356777777777664 343 334444444333 2234667777777777654 335666666666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK 429 (680)
Q Consensus 350 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 429 (680)
++++|...+++..+.+ +.+...+..+...|...|++++|+..+++..+.++. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 7777777777777664 224556666777777777777777777777665433 22222233334555677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 430 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
++.+...+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..| ++|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 76554312234445566666667777777777776665432 122333444555555555 366666655543
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=2.9e-08 Score=108.41 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=170.5
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHC
Q 005729 299 KTATYAAVITALSN-----SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK---------MGYLKDAEFVVSEMERS 364 (680)
Q Consensus 299 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 364 (680)
+...|...+.+... .+..++|.++|++..+.. +-+...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555555322 234678999999998763 2245566666555442 24478999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYN 444 (680)
Q Consensus 365 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 444 (680)
+. -+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 334 dP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~ 410 (553)
T PRK12370 334 DH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGI 410 (553)
T ss_pred CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHH
Confidence 53 378888889899999999999999999998875 3456678888899999999999999999998874 22333344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (680)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 524 (680)
.++..+...|++++|...+.++.+...+-+...+..+..+|...|+.++|...+.++.... +.+....+.+...++..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4455566788999999999998765423345567778888899999999999999876652 233444555666667777
Q ss_pred CHHHHHHHHHHHHHC
Q 005729 525 RWEDVKRLLGNMRAQ 539 (680)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (680)
++|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4788877777654
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=4.9e-11 Score=83.34 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (680)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 346 (680)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.1e-06 Score=87.54 Aligned_cols=449 Identities=16% Similarity=0.109 Sum_probs=239.3
Q ss_pred HHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcC
Q 005729 169 LIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT--RTN 242 (680)
Q Consensus 169 li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g 242 (680)
=++.+.+.|.+++|... ....+.+...+..=+-++++.++|++|+.+.+.=... ...+.+. +=++|| +.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~---fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFF---FEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhh---HHHHHHHHHcc
Confidence 35778888888888765 4555667778888888888888899888665442211 0011111 234444 344
Q ss_pred CCChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 005729 243 KIDSSLLQKLYKEIECDKIEL-DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP-KTATYAAVITALSNSGRTIEAE 320 (680)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 320 (680)
+.+.++ ..+. |..+ |..+...-...+.+.|++++|+++|+.+.+.+..- +..--..++.+-. +.
T Consensus 94 k~Deal--k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l 159 (652)
T KOG2376|consen 94 KLDEAL--KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------AL 159 (652)
T ss_pred cHHHHH--HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hh
Confidence 443322 2222 2222 33355555566677777777777777776654221 1111111111100 01
Q ss_pred HHHHHHHHcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCC-------CCCCHH-------HHHHHHHHHHHc
Q 005729 321 AVFEELKESGLKPRTKAYNAL---LKGYVKMGYLKDAEFVVSEMERSG-------VLPDEH-------TYSLLIDAYANA 383 (680)
Q Consensus 321 ~l~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------~~~~~~-------~~~~li~~~~~~ 383 (680)
.. +.+......| ..+|..+ ...+...|++.+|+++++...+.+ -.-+.. .-.-|...+-..
T Consensus 160 ~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 11 0122222222 2233333 334556778888888887773211 011111 112344556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHC-----------CCCCCHHHHHHHH
Q 005729 384 GRWESARIVLKEMEVSHAKPNS----FIYSRILAGYRDRGEWQ-RTFQVLKEMKSS-----------GVEPDTHFYNVMI 447 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~-~A~~l~~~m~~~-----------~~~p~~~~~~~li 447 (680)
|+.++|..+|........ +|. ..-|.++..-....-++ .++..++..... .-.-....-+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877776653 333 22233333222221111 111122211110 0000111112222
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK--CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (680)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 525 (680)
..|. +..+.+.++-..... ..|. ..+.+++....+ ...+.+|.+++...-+..-.-.......++......|+
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 2222 223333333332221 1233 334444443332 23477888888877665422224556667778889999
Q ss_pred HHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 526 WEDVKRLLG--------NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSL 597 (680)
Q Consensus 526 ~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 597 (680)
++.|.+++. .+.+.+.. +.+-.+++..|.+.++-+.|..++. +|+..|..-.... .--..+|.-+
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~----~Ai~~~~~~~t~s-~~l~~~~~~a 464 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLD----SAIKWWRKQQTGS-IALLSLMREA 464 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHH----HHHHHHHHhcccc-hHHHhHHHHH
Confidence 999999999 55554444 4566778888889888888887765 6666666544321 1111244445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHH
Q 005729 598 INAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEM 652 (680)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 652 (680)
...-.+.|+.++|..+++++.+.. ++|..+...++.+|++.. .+.|..+-+.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 555567899999999999999853 568889999999998874 56776665543
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1.2e-05 Score=82.89 Aligned_cols=500 Identities=12% Similarity=0.127 Sum_probs=265.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005729 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSK 218 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (680)
.+.+...+..|..++..=.......+|...+......|-..-+..+ ..-...++..-+--|..++..++.++|-+.+..
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~ 194 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLAT 194 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445555555555443321111223444445555555555445444 222233444566667777788888888887777
Q ss_pred HHHcC------CCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 219 MRQDG------YHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDKIELD--GQLLNDVIVGFAKAGDASKAMRFLG 289 (680)
Q Consensus 219 m~~~g------~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 289 (680)
..... -+.+...|.-+-...++..+....+ ...++..+..+ -+| ...|++|.+.|.+.|.+++|.++|+
T Consensus 195 vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 195 VLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred hcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 64321 1233444544444444433221110 11222222221 233 4689999999999999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHcCC-----------CCCHH
Q 005729 290 MAQGVGLSPKTATYAAVITALSNS----------------G------RTIEAEAVFEELKESGL-----------KPRTK 336 (680)
Q Consensus 290 ~~~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~A~~l~~~m~~~g~-----------~p~~~ 336 (680)
+.... .-.+.-|..+.+.|.+- + +++-...-|+.+...+. +-++.
T Consensus 273 eai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 273 EAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 87653 12333344444444321 1 12223334444433220 12233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 005729 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLP------DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN---SFI 407 (680)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~ 407 (680)
.|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-..|+++.|..+|++..+...+.- ..+
T Consensus 351 eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 351 EWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 3333222 2345666777777777653 222 235688889999999999999999999876543322 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSG-----------VEP------DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG 470 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~-----------~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 470 (680)
|..-...-.+..+++.|+++.+.....- .++ +...|...++.--..|-++....+|+++.+..
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 6666666677788899998887764321 111 22344555555566788888889999988765
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 471 IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGE---QERWEDVKRLLGNMRAQGLLPNVV 546 (680)
Q Consensus 471 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 546 (680)
+...... -.....+-.+.-++++.+.+++-+..--.|++ ..|+..+..+.+ ....+.|..+|++.++ |.+|...
T Consensus 508 iaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 508 IATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred cCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 4322222 12222233455678888888766554334443 345555544432 3457888888888888 5555432
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHhhhH-----HHHHHHHHHHH-----HCCCCCCHHHHHHH----------------H
Q 005729 547 --TYTTLVDIYGQSGRFDDAIECLEGLS-----DQAVNAFRVMR-----TDGLKPSNLALNSL----------------I 598 (680)
Q Consensus 547 --~~~~li~~~~~~g~~~~A~~~~~~~~-----~~a~~~~~~m~-----~~g~~p~~~~~~~l----------------i 598 (680)
.|......=.+.|....|+.+++... .+-+.+|+-.. ..|+..+...|.-. .
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFA 665 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFA 665 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHH
Confidence 22222222233466666666665211 00111111111 01333333333222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 599 NAFGEDQRDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 599 ~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
..-++.|..+.|..++..--+. ..| +...|.+.=.--.+.|+ .+.+++|+
T Consensus 666 dlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn----edT~keML 717 (835)
T KOG2047|consen 666 DLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN----EDTYKEML 717 (835)
T ss_pred HHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC----HHHHHHHH
Confidence 2334567777777776655553 233 44556666555566776 33445554
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1e-06 Score=93.06 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=50.1
Q ss_pred HHHhcccCCHHHHHHh---hCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 005729 170 IHALGRSEKLYEAFLL---SQRQRLT-PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT 239 (680)
Q Consensus 170 i~~~~~~g~~~~A~~~---~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 239 (680)
+..+...|++.+|+.. ....-.| ..........+.+.|+.++|..+|+.+.+.+ |+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 3456778999999887 2333344 4556677888999999999999999999986 77777765554443
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=9.1e-07 Score=93.49 Aligned_cols=298 Identities=16% Similarity=0.167 Sum_probs=206.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPKT-ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM--- 348 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~--- 348 (680)
..+...|++++|++.++.-... .+|. ..+......+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3456789999999999775543 3454 455677899999999999999999999986 23444455555555322
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 349 --GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (680)
Q Consensus 349 --g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 425 (680)
.+.+...++++++...- |.......+.-.+.....+ ..+...+..+...|++ .+++.+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25677788888887653 3322222222122221222 2345556666777754 34555556666555555555
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 005729 426 QVLKEMKSS----G----------VEPDT--HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKC 488 (680)
Q Consensus 426 ~l~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 488 (680)
+++...... + -+|.. .++..+...|...|++++|.+..+..+++. |+ +..|..-...|-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 666655422 1 12444 345666778889999999999999999874 54 67888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCC
Q 005729 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV--------TYTTLVDIYGQSGR 560 (680)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~li~~~~~~g~ 560 (680)
|++.+|.+.++.....+ .-|...=+..+..+.+.|++++|.+++....+.+..|... -......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887 5677777788888999999999999999988776544221 12445678999999
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHC
Q 005729 561 FDDAIECLEGLSDQAVNAFRVMRTD 585 (680)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~ 585 (680)
+..|++.|. ...++|..+...
T Consensus 321 ~~~ALk~~~----~v~k~f~~~~~D 341 (517)
T PF12569_consen 321 YGLALKRFH----AVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHH----HHHHHHHHHhcc
Confidence 999998765 344566666653
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=5.4e-08 Score=101.34 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--
Q 005729 370 EHTYSLLIDAYANAGRWESARIVLKEMEVS-----H-AKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSS-----G-- 435 (680)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----~-- 435 (680)
..+...+...|...|++++|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555777777777777777777766443 1 122222 2334667777888888888888877542 2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---C
Q 005729 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-----GI-EPDT-ITWNTLIDCHFKCGRYDRAEELFEEMQER---G 505 (680)
Q Consensus 436 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 505 (680)
.+--..+++.|...|.+.|++++|...+++..+. +. .+.+ ..++.++..|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456677777888889888888877765532 11 1222 24667778888999999999999876532 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 005729 506 YFPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GL--LP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (680)
Q Consensus 506 ~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (680)
..++ ..+++.|...|.+.|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|. +
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~----~ 434 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE----E 434 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH----H
Confidence 1122 357889999999999999999999988753 12 12 24567888999999999999998876 4
Q ss_pred HHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 575 AVNAFRVMRTDGL-KPSN-LALNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 575 a~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
+..+. +..|. .|+. .+|..|...|...|+++.|+++.+...
T Consensus 435 ~~~i~---~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIM---KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHH---HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444 33332 2444 489999999999999999999988776
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.4e-08 Score=95.41 Aligned_cols=229 Identities=15% Similarity=0.103 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 304 AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA 383 (680)
Q Consensus 304 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 383 (680)
+.+..+|.+.|.+.+|.+-|+...+. .|-+.||-.|-+.|.+..+.+.|+.++.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777776654 455566666777777777777777777776654 122333334455666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 005729 384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAF 463 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 463 (680)
++.++|.++|+...+.. +.++.....+...|.-.++.+.|+..|+.+.+.| .-+...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777766543 3345555555666666777777777777777777 345666666666666667777777777
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 464 DRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 464 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.+....--.|+ ...|-.+-......|++..|.+.|+-.+.++ .-+...+|.|.-.-.+.|++++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 76665432222 3456666666666777777777777766654 44456667666666677777777777766655
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=6.5e-06 Score=78.68 Aligned_cols=445 Identities=12% Similarity=0.047 Sum_probs=255.1
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (680)
+..++..|..+++.-...+-. ..+.+--=+...+.+-|++++|... .....++...|-.|.-.+.-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 346788888888776644311 1111222355677778888888766 33444555666666666677788888877
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005729 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (680)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (680)
+-.+..+ ++..-..++...-+.++- .....++..+.. ...---+|.......-.+++|++++.+.+..
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndE--k~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDE--KRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcH--HHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7655432 222222233333333332 111233333321 1122234444444555688889988888764
Q ss_pred CCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 295 GLSPKTATYAAVI-TALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (680)
Q Consensus 295 g~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 373 (680)
.|.-...|..+ -+|.+..-++-+.+++.-..+. ++.+...-|.......+.=.-..|++-.+.+.+.+-. . |
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~ 253 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y 253 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c
Confidence 45656666544 4556677777777777766653 3334445555444444433333444444444443211 0 1
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---
Q 005729 374 SLLIDAYANA-----GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNV--- 445 (680)
Q Consensus 374 ~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~--- 445 (680)
-.+.-+++. ..-+.|++++--+.+. -+..-..++--|.+.+++.+|..+.+++. +.++.-|..
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgv 324 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGV 324 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHH
Confidence 122223332 2346677776655432 12233445566788999999998887764 222222222
Q ss_pred ----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 446 ----MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI-TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 446 ----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
+..-......+.-|.+.|+..-+.+..-|.. --..+...+.-..++++.+-+++.+...-...|...|| +..+.
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHH
Confidence 2222222334666777777665555443333 23455666666778899988888887654334444444 67888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 005729 521 GEQERWEDVKRLLGNMRAQGLLPNVVTYT-TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLI 598 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li 598 (680)
+..|.+.+|+++|-.+....++ |..+|. .|.++|.+.+++.-|++++ ....-..+.. ....+.
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~--------------lk~~t~~e~fsLLqlIA 468 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM--------------LKTNTPSERFSLLQLIA 468 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH--------------HhcCCchhHHHHHHHHH
Confidence 8999999999999887655444 455554 5568888999998887654 3322222223 334455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 599 NAFGEDQRDAEAFAVLQYMKENGLKPDVVTYT 630 (680)
Q Consensus 599 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 630 (680)
+-|.+.+.+=-|-+.|+.+.. +.|++.-|.
T Consensus 469 n~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 778889998888888988877 567766553
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.8e-07 Score=91.67 Aligned_cols=287 Identities=15% Similarity=0.109 Sum_probs=216.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSL 375 (680)
Q Consensus 296 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 375 (680)
...+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34566666677777888999999999999988763 5666777777778888888888777777777653 446788998
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 005729 376 LIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC 455 (680)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 455 (680)
+.--|.-.|+..+|.+.|.+....+. .=...|-.....|+-.|..+.|+..+...-+.= +-..--+--+.--|.+.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 88888888999999999988765432 234578888889999999999998887765531 1111122334456788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 005729 456 LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER--GY----FPCTTTYNIMINLLGEQERWEDV 529 (680)
Q Consensus 456 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~p~~~t~~~li~~~~~~g~~~~A 529 (680)
.+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+..++. .+ .--..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999887654 457778888887788889999999999887632 11 12345688888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 530 KRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAF 601 (680)
Q Consensus 530 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 601 (680)
...+++.+... +-+..++.++.-.|...|+++.|++.|. +.. .+.|+..+-..++..+
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fh-----------KaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFH-----------KAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHH-----------HHH--hcCCccHHHHHHHHHH
Confidence 99999998863 3488999999999999999999988765 222 3678877666666543
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.1e-08 Score=96.00 Aligned_cols=233 Identities=10% Similarity=-0.001 Sum_probs=186.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW-NTLIDCHF 486 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~ 486 (680)
-+.+.++|.+.|.+.+|.+.+..-.+. .|-+.||..|-+.|.+..+.+.|+.+|.+-.+. .|-.+|| .-+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 356788999999999999998887766 677888999999999999999999999988875 3444444 45667777
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (680)
..++.++|.++++...+.. +.++.....+...|.-.++.+-|+.+++++++.|+. ++..|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8899999999999988875 667777777888888899999999999999999876 78899999999999999888877
Q ss_pred HHhhhHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCc
Q 005729 567 CLEGLSDQAVNAFRVMRTDGLKPSN--LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHK 644 (680)
Q Consensus 567 ~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 644 (680)
.|+ .....--.|+. .+|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++
T Consensus 380 sf~-----------RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 380 SFQ-----------RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHH-----------HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHH
Confidence 655 22222122333 368888888888999999999999888653 3356788888888899999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 005729 645 VPAVYEEMILSGCTPD 660 (680)
Q Consensus 645 A~~~~~~m~~~g~~pd 660 (680)
|..+++.... +.|+
T Consensus 448 Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 448 ARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHHHhhh--hCcc
Confidence 9999998765 3444
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.3e-06 Score=80.42 Aligned_cols=292 Identities=13% Similarity=0.055 Sum_probs=200.8
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 313 SGRTIEAEAVFEELKES-GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARI 391 (680)
Q Consensus 313 ~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (680)
.++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|++....+.. +........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 45555555554444332 24557777888888888999999999888887765311 22233333444567888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 005729 392 VLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471 (680)
Q Consensus 392 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 471 (680)
+...+.... +-....|-.-.......+++..|+.+-++..+.. +.+...|..-...+...+..++|.-.|.......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 777776432 1233344444455566788888888888877654 4455556555667778889999998898877653
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 005729 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI-NLLGE-QERWEDVKRLLGNMRAQGLLPN-VVTY 548 (680)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~p~-~~~~ 548 (680)
+-+...|.-|+.+|...|++.+|..+-+..... ++.+..+...+. ..|.. ..--++|.+++++.++. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 346788999999999999999998877766544 234555555542 33332 22347788888887764 555 3456
Q ss_pred HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005729 549 TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV 626 (680)
Q Consensus 549 ~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 626 (680)
+.+...+...|+.++++.+++.... ..||....+.|.+.+...+.+++|.+.|..... +.|+.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~-------------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI-------------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh-------------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 6777888889999988887663221 468888889999999999999999999998887 55653
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=8.3e-06 Score=85.92 Aligned_cols=387 Identities=13% Similarity=0.148 Sum_probs=198.3
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 005729 260 KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAY 338 (680)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~ 338 (680)
.+.-|..+|..|.-+...+|+++.+.+.|++.... .--....|+.+-..|...|.-..|..+++.-....-.| +...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34456666666666666666666666666665432 12234456666666666666666666666544332122 33333
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCC
Q 005729 339 NALLKGYVK-MGYLKDAEFVVSEMERS--GV--LPDEHTYSLLIDAYANAG-----------RWESARIVLKEMEVSHAK 402 (680)
Q Consensus 339 ~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~ 402 (680)
-..-..|.+ .+.++++..+-.+.... +. ......|..+.-+|...- ...++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 322233332 24455555555544431 10 112334444444443221 123455555555544321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI 482 (680)
Q Consensus 403 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 482 (680)
|......+.--|+..++.+.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+.. ..|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 2222222333455556666666666666665445566666666666666666666666666655431 11222222223
Q ss_pred HHHHHcCChhHHHHHHHHHHHC-------------C--------C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 483 DCHFKCGRYDRAEELFEEMQER-------------G--------Y-------FPCTTTYNIMINLLGEQERWEDVKRLLG 534 (680)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~-------------~--------~-------~p~~~t~~~li~~~~~~g~~~~A~~~~~ 534 (680)
+.-..-++.++|+.....+... | . .-...++..+...... +.+.+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc
Confidence 3333456666666655444321 0 0 0000111111100000 0000000000
Q ss_pred HHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHH
Q 005729 535 NMRAQGLL--PN------VVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMR 583 (680)
Q Consensus 535 ~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~ 583 (680)
+...... |+ ...|......+.+.+..++|..++. +..++|.+.|....
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0000011 11 1233445556666666666653332 44456666666655
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 584 TDGLKPSNL-ALNSLINAFGEDQRDAEAFA--VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 584 ~~g~~p~~~-~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
. +.|+.+ ...++..++.+.|+..-|.. ++..+.+.+ +-+...|..+...+.+.|+.++|.+.|....+.
T Consensus 712 ~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 A--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred h--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5 567765 78888888888887777777 888888843 337788888999999999999998888887764
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=6.8e-05 Score=79.39 Aligned_cols=467 Identities=14% Similarity=0.159 Sum_probs=233.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-------------hC-CCCCCHHHHHHHHHHHHH
Q 005729 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-------------SQ-RQRLTPLTYNALISACAR 205 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~-~~~~~~~~~~~li~~~~~ 205 (680)
-|+.+.|+.-.+.+.. ..+|..|.+++.+-.+++-|... .+ ...++ ..--.+...-..
T Consensus 741 iG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 4667777766554432 24677787777777776666543 00 00111 111112222346
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 005729 206 NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAM 285 (680)
Q Consensus 206 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (680)
.|..++|..+|++.++.+ .+=+.|-..|.++++. ++-+.- ..+.. ..+|-.-...+-..++.+.|+
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~--eiAE~~--DRiHL-r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAF--EIAETK--DRIHL-RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHH--HHHhhc--cceeh-hhhHHHHHHHHHhhccHHHHH
Confidence 678888888888877632 2233344455554332 211110 11111 223444444455556677776
Q ss_pred HHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 286 RFLGMAQ----------GVG---------LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (680)
Q Consensus 286 ~~~~~~~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 346 (680)
+.|++.- ... -..|...|.-....+-..|+.+.|+.+|....+ |-.+++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 6665421 110 012333344444455556666666666665543 445666667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE------ 420 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------ 420 (680)
-.|+.++|-++-++-. |......|.+.|-..|++.+|...|.+... +...|+.|-.++.
T Consensus 950 ~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 7777777776654422 556667788888888888888888876642 3333333322221
Q ss_pred ---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------HHHH--CCCCCCHHHHHHH
Q 005729 421 ---------WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFD--------RMLS--EGIEPDTITWNTL 481 (680)
Q Consensus 421 ---------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~--~~~~~~~~~~~~l 481 (680)
.-.|-..|++. |. -....+..|-+.|.+.+|+++-= +++. .....|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 12222223221 10 01122334555666655554311 1111 1223455556666
Q ss_pred HHHHHHcCChhHHHHHHHHHHH--------------------------CCCCCCHH----HHHHHHHHHHhcCCHHHHHH
Q 005729 482 IDCHFKCGRYDRAEELFEEMQE--------------------------RGYFPCTT----TYNIMINLLGEQERWEDVKR 531 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~--------------------------~~~~p~~~----t~~~li~~~~~~g~~~~A~~ 531 (680)
.+-++...++++|..++-...+ ++-.|+.. ....+...|.+.|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 6666666666666655422111 11123332 23444556666666655544
Q ss_pred HHHHH----------HHCC-----------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHh---
Q 005729 532 LLGNM----------RAQG-----------------------------LLPNVVTYTTLVDIYGQSGRFDDAIECLE--- 569 (680)
Q Consensus 532 ~~~~m----------~~~~-----------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~--- 569 (680)
-|.+. ++.| ..-++.+...++..|.|..-++.--.+|+
T Consensus 1167 KfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1167 KFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred HHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHH
Confidence 44321 1221 23344444444444444333332222221
Q ss_pred --------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCC
Q 005729 570 --------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE-----------DQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 570 --------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~g~~p 624 (680)
+..++|-+.+.+..+++. ....|+.|=.-..+ ..+..+.++-.+.|.+...-|
T Consensus 1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 334455555555444321 11123333222111 235555666666666654444
Q ss_pred C----HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 625 D----VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 625 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
| ...|..|+..+....+|..|-+.+++|.++-..-|..
T Consensus 1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLS 1366 (1416)
T ss_pred CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchh
Confidence 3 3578889999999999999999999999874444433
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=5.1e-06 Score=86.37 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=129.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (680)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (680)
+.+......+.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.. .++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444556678888888887776532 23456677788888888888888886542 355667888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005729 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 422 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (680)
+.|.++-.+.. |.......|..-..-+-+.|.+.+|+++|-.+. .|+ ..|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 88888776653 334455666666666777888888887775543 344 2466777888888777776653
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 502 QERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 502 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
-.. .-..|...+..-+...|+...|+.-|-+..+ |.+-+++|-..+.+++|.++-+
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 211 1134555666667777888877776654432 4556677777777777776654
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=7.4e-07 Score=89.03 Aligned_cols=232 Identities=13% Similarity=0.012 Sum_probs=136.7
Q ss_pred CCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 005729 384 GRWESARIVLKEMEVSHA-KP--NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
+..+.++.-+.++..... .| ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555554321 11 13346666666777777777777777776654 455677778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (680)
Q Consensus 461 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 540 (680)
..|+...+.. +-+...|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 8888877654 2345677777777888888888888888887764 33221122222234567788888888665543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
..++... ..+ .....|+...+ +.++. +.+.++.-.+ +.| ....|..+...+.+.|++++|+..|++..+
T Consensus 195 ~~~~~~~-~~~--~~~~lg~~~~~-~~~~~----~~~~~~~~~~--l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 LDKEQWG-WNI--VEFYLGKISEE-TLMER----LKAGATDNTE--LAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CCccccH-HHH--HHHHccCCCHH-HHHHH----HHhcCCCcHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233221 122 22334554432 12110 0000000000 112 234788888999999999999999999988
Q ss_pred CCCCCCHHHHHH
Q 005729 620 NGLKPDVVTYTT 631 (680)
Q Consensus 620 ~g~~p~~~~~~~ 631 (680)
.+ +||.+-+..
T Consensus 265 ~~-~~~~~e~~~ 275 (296)
T PRK11189 265 NN-VYNFVEHRY 275 (296)
T ss_pred hC-CchHHHHHH
Confidence 43 235544443
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=3.9e-05 Score=81.07 Aligned_cols=408 Identities=14% Similarity=0.049 Sum_probs=258.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCc-CHHH
Q 005729 189 QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIEL-DGQL 267 (680)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~-~~~~ 267 (680)
...++..|..+.-++.+.|+++.+.+.|++....- .-....|..+-..+...|.. ..+..+++........| |...
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~--s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD--SKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc--hHHHHHHHhhcccccCCCcchH
Confidence 34678889999999999999999999999977643 23455666666677777764 33456666554432223 3344
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCC
Q 005729 268 LNDVIVGFA-KAGDASKAMRFLGMAQGV--GL--SPKTATYAAVITALSNS-----------GRTIEAEAVFEELKESGL 331 (680)
Q Consensus 268 ~~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~ 331 (680)
+-..-..|. +.+.+++++++..++... |. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 433334444 447888888887777652 11 12233455554444332 124567888888877653
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 332 -KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR 410 (680)
Q Consensus 332 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 410 (680)
.|+...| +.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+.....-. -|......
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDG 552 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchh
Confidence 3333333 4456778889999999999999886677899999999999999999999999887765421 11111222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------------------CC-------CCCHHHHHHHHHHHHccCCHHHHHHH
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSS---------------------GV-------EPDTHFYNVMIDTFGKYNCLHHAMAA 462 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~---------------------~~-------~p~~~~~~~li~~~~~~g~~~~A~~~ 462 (680)
-+..-...++.++++.....+... |. .-...++..+.......+....-...
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 222223345555555444433210 00 00112222222111110000000000
Q ss_pred HHHHHHCCC--CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 463 FDRMLSEGI--EPD------TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534 (680)
Q Consensus 463 ~~~m~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 534 (680)
+.+... .|+ ...|......+.+.+..++|...+.+..... +-....|......+...|.+++|.+.|.
T Consensus 633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 111111 112 2346667778888999999999998887764 5567777777788889999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005729 535 NMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFA 612 (680)
Q Consensus 535 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 612 (680)
..... .| ++....++..++.+.|+..-|.. ..+...+.+ +.|+ ...|-.+...+-+.|+.++|.+
T Consensus 709 ~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~---------~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 709 VALAL--DPDHVPSMTALAELLLELGSPRLAEK---------RSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhc--CCCCcHHHHHHHHHHHHhCCcchHHH---------HHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 98874 45 57789999999999997665543 123445555 3444 4599999999999999999999
Q ss_pred HHHHHHH
Q 005729 613 VLQYMKE 619 (680)
Q Consensus 613 ~~~~m~~ 619 (680)
.|....+
T Consensus 776 cf~aa~q 782 (799)
T KOG4162|consen 776 CFQAALQ 782 (799)
T ss_pred HHHHHHh
Confidence 9999887
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=2.5e-05 Score=74.49 Aligned_cols=338 Identities=15% Similarity=0.118 Sum_probs=182.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcC
Q 005729 306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS-LLIDAYANAG 384 (680)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g 384 (680)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+-.-|+.-+.+.++. +||-..-. .-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444455555555655555555431 111222222234455556655566555555554 34432211 1223455666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005729 385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFD 464 (680)
Q Consensus 385 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 464 (680)
.+++|..-|+.+.+.....+. ...++.+.-..++-+.+ ...+..+...|+...|+....
T Consensus 121 ele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhHHHHHH
Confidence 666666666666655321110 01111111111111111 122233344566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN 544 (680)
Q Consensus 465 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 544 (680)
.+++.. +.|...|..-..+|...|.+.+|+.=++...+.. .-+..++.-+-..+...|+.+.++...++-++ +.||
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 666654 3566666666667777777777766665554443 33455555566666677777777766666665 3454
Q ss_pred HHHHHHHHHHHHhcCCh----HHHHHHHh-hhHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 545 VVTYTTLVDIYGQSGRF----DDAIECLE-GLSDQAVNAFRVMRTDGLKPSNL---ALNSLINAFGEDQRDAEAFAVLQY 616 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~----~~A~~~~~-~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~ 616 (680)
....-.. |-+..++ +.|.+.++ +...++++..++..+....-..+ .+..+-.++...|++.+|++...+
T Consensus 256 HK~Cf~~---YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPF---YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 3322111 1111111 11111111 22233333444444432221122 344556677788999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Q 005729 617 MKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMKQT 677 (680)
Q Consensus 617 m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~~ 677 (680)
..+ +.|| ..++.--..+|.-...++.|+.-|++..+.+ ..+.....-+.+|-|..|+.
T Consensus 333 vL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 333 VLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHh
Confidence 988 5665 7899999999999999999999999998853 33445666777777766654
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=1.1e-06 Score=87.76 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417 (680)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 417 (680)
|..+...|...|+.++|...|++..+... .+...|+.+...|...|++++|...|++..+..+ -+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 44444444455555555555555444331 2344555555555555555555555555544321 123344444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005729 418 RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEEL 497 (680)
Q Consensus 418 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 497 (680)
.|++++|.+.|+...+.. |+..........+...++.++|...|....... .++...| .......|+.+.+ +.
T Consensus 145 ~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HH
Confidence 555555555555544432 221111111112223445555555554433221 1121111 1122224444333 23
Q ss_pred HHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 498 FEEMQER---GY---FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 498 ~~~m~~~---~~---~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+..+.+. .. +.....|..+...+.+.|++++|...|++..+.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3333211 00 012245666666666666666666666666654
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=9.2e-06 Score=77.67 Aligned_cols=374 Identities=13% Similarity=0.056 Sum_probs=199.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHH
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNA-LLKGYVK 347 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-li~~~~~ 347 (680)
-.+..++.+.|++++|+..+..+.... .++...+..|..++.-.|++.+|..+-.+.. +....+. |+..--+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHH
Confidence 345556667778888877777665532 4555566666666666777777776655432 2233333 3344445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 005729 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI-LAGYRDRGEWQRTFQ 426 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~ 426 (680)
.++-++-..+.+.+.+. ..-..+|.....-.-.+.+|+++|+.....+ |.-...|.. .-+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHH
Confidence 66666666665555532 2333344554444556778888888777543 344444433 345566777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHH
Q 005729 427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG-----RYDRAEELFEEM 501 (680)
Q Consensus 427 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m 501 (680)
+++-..+.- +.++...|....-..+.=.-..|+.-...+...+-. . -..+.-+++++ .-+.|++++-.+
T Consensus 207 vl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~----~~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 207 VLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E----YPFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----chhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 777655541 233334444333333322222333333333332210 0 11233334432 346677776666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHh-----
Q 005729 502 QERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR-------FDDAIECLE----- 569 (680)
Q Consensus 502 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~----- 569 (680)
.+. .| ..-..++-.|.+.+++.+|..+.+++.- ..|-......++ +...|+ +.-|...|+
T Consensus 281 ~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 281 MKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred Hhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 553 22 2233455567899999999988876542 223233332222 222332 233333333
Q ss_pred --------------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 570 --------------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTY 629 (680)
Q Consensus 570 --------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 629 (680)
...++.+..++.++.. +..|...--.+..+++..|.+.+|.++|-+.....++ |..+|
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y 430 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILY 430 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHH
Confidence 1123333334444432 2223333335778888899999999998776543333 45566
Q ss_pred H-HHHHHHHhcCCcCcHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHHH
Q 005729 630 T-TLMKALIRVDKFHKVPAVYEEMILSGCTPDR-KARAMLRSALRYMK 675 (680)
Q Consensus 630 ~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~a~~~~k 675 (680)
. .|.++|.+.++..-|++++-++ +...+. .....+.+-|.+..
T Consensus 431 ~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 431 KSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHH
Confidence 5 4557888998888886655443 322232 23455666665544
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5.7e-05 Score=79.94 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=113.8
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRL-TPLTYNALISACARNDDLEKALNLM 216 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 216 (680)
..|-+++|..++++-.+.+ .|=..|-..|.+++|+++ ....+. =..||......+-..++.+.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3344455555555443322 233456678999999988 222222 2247777788888889999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005729 217 SKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGL 296 (680)
Q Consensus 217 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 296 (680)
++... + .+....+|.-+ ... .++.... ..|...|..-....-..|+.+.|+.+|.....
T Consensus 882 EK~~~----h-afev~rmL~e~------p~~-~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 882 EKAGV----H-AFEVFRMLKEY------PKQ-IEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HhcCC----h-HHHHHHHHHhC------hHH-HHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 87431 1 11111122111 001 1111122 23556666667777778999999999987764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (680)
Q Consensus 297 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 362 (680)
|-++++..|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6677888888899888888776533 44555668888888888888888887654
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=2.2e-05 Score=81.38 Aligned_cols=299 Identities=11% Similarity=0.027 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGL-SPKTA-TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (680)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 344 (680)
.|..+...+...|+.+++.+.+....+... ..+.. ........+...|++++|.+++++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444455555666665555554433211 11211 12222334556677777777777766642 233333332 212
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 345 YVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (680)
Q Consensus 345 ~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (680)
+.. .+..+.+.+.+..... ...........+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 222 3344444444443111 112223344455566777777777777777777654 3345566677777777777
Q ss_pred HHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCChhH
Q 005729 421 WQRTFQVLKEMKSSGV-EPDT--HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDTITW-N--TLIDCHFKCGRYDR 493 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~ 493 (680)
+++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 7777777777665421 1222 3344666777777888888888877653321 1111111 1 22222333443333
Q ss_pred HHHH--H-HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCh
Q 005729 494 AEEL--F-EEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL------P--NVVTYTTLVDIYGQSGRF 561 (680)
Q Consensus 494 A~~~--~-~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------p--~~~~~~~li~~~~~~g~~ 561 (680)
+.++ . ....... .............++...|+.++|..++..+...... . .........-++...|+.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1 1111110 0111122224566677888899999888887653211 0 122223333456688999
Q ss_pred HHHHHHHh
Q 005729 562 DDAIECLE 569 (680)
Q Consensus 562 ~~A~~~~~ 569 (680)
++|.+.+.
T Consensus 324 ~~A~~~L~ 331 (355)
T cd05804 324 ATALELLG 331 (355)
T ss_pred HHHHHHHH
Confidence 99988776
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=1.4e-05 Score=82.70 Aligned_cols=312 Identities=11% Similarity=0.002 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 300 TATYAAVITALSNSGRTIEAEAVFEELKESGL-KPRT-KAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLI 377 (680)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 377 (680)
...|..+...+...|+.+++.+.+....+... ..+. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566677777778888887777777654322 1222 222233445677899999999999988764 334445443 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 378 DAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 378 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
..+.. .+..+.+.+.+.. .....+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 23333 4555555555554 111222234455566778899999999999999998875 55677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 005729 454 NCLHHAMAAFDRMLSEGI-EPDT--ITWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPCTTTY-N--IMINLLGEQERW 526 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~-~--~li~~~~~~g~~ 526 (680)
|++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999999887532 1232 3456788889999999999999999864431 1222211 1 223333444433
Q ss_pred HHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 005729 527 EDVKRL--L-GNMRAQGL-LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLK-PSNLALNSLINAF 601 (680)
Q Consensus 527 ~~A~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~ 601 (680)
..+.++ + ........ ............++...|+.++|...++.....+.. |...+.. ...........++
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS----ADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc----cCchhhhHHhhhHHHHHHHHH
Confidence 333332 1 11111100 111222235677788899999998887644333221 0001111 1112233344456
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005729 602 GEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 602 ~~~g~~~~A~~~~~~m~~ 619 (680)
...|++++|.+.+.....
T Consensus 318 ~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 318 FAEGNYATALELLGPVRD 335 (355)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 678999999998887765
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.87 E-value=2e-06 Score=77.76 Aligned_cols=191 Identities=16% Similarity=0.059 Sum_probs=85.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (680)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 525 (680)
|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..... +-+....|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3344444555555555555544443 2233344445555555555555555555544433 2333444444444455555
Q ss_pred HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 005729 526 WEDVKRLLGNMRAQGL-LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGE 603 (680)
Q Consensus 526 ~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~ 603 (680)
+++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.++.. .+ ..|+. .+.-.+.....+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra-----------L~--~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA-----------LE--LDPQFPPALLELARLHYK 185 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH-----------HH--hCcCCChHHHHHHHHHHh
Confidence 5555555555444311 112334444444444555555444443311 11 12222 234444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHH
Q 005729 604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEM 652 (680)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 652 (680)
.|++..|..+++.....|. ++.......|+.--+.|+.+.+.++=..+
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred cccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555555555555444332 44444444444445555544444443333
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=6.4e-06 Score=76.91 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 005729 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAA-VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG- 344 (680)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~- 344 (680)
..+.|..+|....++..|-+.++++... .|...-|.. -...+.+.+.+..|+++...|.+. ++...-..-+.+
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAA 120 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH
Confidence 3444555566666666666666666543 344444432 245566667777777776666542 222211111111
Q ss_pred -HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005729 345 -YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR 423 (680)
Q Consensus 345 -~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 423 (680)
.-..+++..+..++++....| +..+.+...-...+.|++++|.+-|....+.+--.....|+..+ +..+.++++.
T Consensus 121 IkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyas 196 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYAS 196 (459)
T ss_pred HhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHH
Confidence 123456666666666655322 44444444455556777777777777666554333444555443 3345566777
Q ss_pred HHHHHHHHHHCCCC-------------CCH---------------HHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCC
Q 005729 424 TFQVLKEMKSSGVE-------------PDT---------------HFYNVMIDTFGKYNCLHHAMAAFDRMLS-EGIEPD 474 (680)
Q Consensus 424 A~~l~~~m~~~~~~-------------p~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 474 (680)
|++...++.++|++ ||+ ..+|.-...+.+.|+.+.|.+.+..|.- .....|
T Consensus 197 ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elD 276 (459)
T KOG4340|consen 197 ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELD 276 (459)
T ss_pred HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCC
Confidence 77777766665532 111 1122223334677888888888877752 223456
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 005729 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTTLVD 553 (680)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~ 553 (680)
++|...+.-.= ..+++.+..+-+.-+.+.. +-...||..++-.||++.-++-|-.++.+-...-++ .+...|+ |++
T Consensus 277 PvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLd 353 (459)
T KOG4340|consen 277 PVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLD 353 (459)
T ss_pred chhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHH
Confidence 66665543322 2455555665555555554 334678888888899988888888887654332111 1333443 334
Q ss_pred HHHh-cCChHHHHHHHhh
Q 005729 554 IYGQ-SGRFDDAIECLEG 570 (680)
Q Consensus 554 ~~~~-~g~~~~A~~~~~~ 570 (680)
++.. .-..++|.+-+++
T Consensus 354 aLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 354 ALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHhCCCCHHHHHHHHHH
Confidence 4333 3456666665553
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=2.2e-06 Score=77.41 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 005729 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (680)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 456 (680)
.-+|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|.....+|..|.+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCCh
Confidence 334444444444444444444332 1223344444444444444444444444444332 22333444444444444444
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 457 HHAMAAFDRMLSEG-IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGN 535 (680)
Q Consensus 457 ~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 535 (680)
++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..+++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 45544444444321 11122344444444445555555555555555443 22334444444455555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005729 536 MRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 536 m~~~~~~p~~~~~~~li~~~~~~g~~~~A 564 (680)
....+. ++..+....|+.--..|+.+.+
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHH
Confidence 444432 4444444444444444444443
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.6e-07 Score=93.97 Aligned_cols=241 Identities=15% Similarity=0.161 Sum_probs=158.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005729 416 RDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAE 495 (680)
Q Consensus 416 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 495 (680)
.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+.+..+.. +-+....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 44555556666666555443 4455566666666666666666666666666554 234555566666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005729 496 ELFEEMQERGYFPCTTTYNIMI---------NLLGEQERWEDVKRLLGNMRA-QGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 496 ~~~~~m~~~~~~p~~~t~~~li---------~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (680)
++++.-+... +|- .|...- ..+.....+....++|-++.. .+..+|+.+...|.-.|--.|++++|+
T Consensus 374 ~~L~~Wi~~~-p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNK-PKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhC-ccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6666654432 000 000000 011112223344555555544 354578889999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcC
Q 005729 566 ECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV-TYTTLMKALIRVDKFH 643 (680)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~ 643 (680)
++|+ ...+ .+|+.. .||.|...++...+.++|+..|+++++ +.|+.+ ...-|.-.|+..|.|+
T Consensus 451 Dcf~-----------~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 451 DCFE-----------AALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHH-----------HHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHH
Confidence 8865 3333 567665 899999999999999999999999998 788754 5666788899999999
Q ss_pred cHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHHHh
Q 005729 644 KVPAVYEEMILS---------GCTPDRKARAMLRSALRYMKQ 676 (680)
Q Consensus 644 ~A~~~~~~m~~~---------g~~pd~~~~~~l~~a~~~~k~ 676 (680)
+|.+.|-+.+.. +..++..+|..|+.++..+++
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999998877632 233445789999988886654
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.8e-05 Score=75.75 Aligned_cols=382 Identities=13% Similarity=0.046 Sum_probs=220.6
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (680)
+.++++.|...|...+... |++..+|+.-..+|++.|++.+|.+- ....+.-+..|+-...++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 6689999999999999877 77889999999999999999999865 45555567899999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhC---CCCcCHHHHHHHHHHHHHc----------CC
Q 005729 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECD---KIELDGQLLNDVIVGFAKA----------GD 280 (680)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~---~~~~~~~~~~~li~~~~~~----------g~ 280 (680)
-|.+-.+.. +-+...++-+..+.......+... .-.++..+... ........|..++..+-+. ..
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999977653 223344444444431110000000 00111111100 0001111222222221110 01
Q ss_pred HHHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005729 281 ASKAMRFLGM-----AQGVG-------LSP------------K----------TATYAAVITALSNSGRTIEAEAVFEEL 326 (680)
Q Consensus 281 ~~~A~~~~~~-----~~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~l~~~m 326 (680)
+..|.-.+.. +...| ..| | ..-...+.+...+..++..|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1111111100 00000 011 0 012344566666667777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 327 KESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSL-------LIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 327 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
.+.. -+..-++....+|...|.+.++...-....+.|-. ...-|+. +..+|.+.++++.++..|.+....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 6654 35555666667777777777666666655554422 1112222 233555566677777777665443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW 478 (680)
Q Consensus 400 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 478 (680)
...|+ ...+....+++....+...-. .|.. .-...-...+.+.|++..|...|.++++.. +-|...|
T Consensus 328 ~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 328 HRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred hcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 32222 122223334444433333222 1221 111222456677888888888888888775 4577788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
.....+|.+.|.+..|+.-.+..++.. ++....|..-..++....++++|.+.|.+.++.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888877777764 444555666666666677888888888888775
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=3.1e-05 Score=80.72 Aligned_cols=228 Identities=18% Similarity=0.197 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 348 (680)
-+.|..|.+.|.+.+|.+....-.. +..|......+..++.+..-++.|-++|+++... + -.+.+|-+-
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~----d-----kale~fkkg 687 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF----D-----KALECFKKG 687 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----H-----HHHHHHHcc
Confidence 3457788888888888775421111 1345555555566666666666666666665421 1 122222222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 349 GYLKDAEFVVSEMERSGVLPDEHT-YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 349 g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 427 (680)
.-+-+|.++-+-.- +..+++ -......+...|+++.|+..|-+.. .....+.+.....+|.+|+.+
T Consensus 688 daf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~i 754 (1636)
T KOG3616|consen 688 DAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISI 754 (1636)
T ss_pred cHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhH
Confidence 22334433322211 101111 1112233444555555555443321 122233444455566666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 005729 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF 507 (680)
Q Consensus 428 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 507 (680)
++.+.... .-..-|..+.+-|+..|+++.|+++|.+.- .++-.|.+|.+.|+++.|.++-.+.. |..
T Consensus 755 ldniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e 821 (1636)
T KOG3616|consen 755 LDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPE 821 (1636)
T ss_pred HHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cch
Confidence 66555432 222344555556666666666666654321 24445556666666666665544432 212
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 508 PCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 508 p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
.....|..-..-+-++|++.+|++++
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhhee
Confidence 22333444444445555555555554
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=8.9e-05 Score=87.21 Aligned_cols=374 Identities=12% Similarity=0.017 Sum_probs=225.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
......|...|++.+|...+..... .+. ..............|++..+...++.+.......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3344456666777766654443321 100 011122233455677887777777665321111122223344555667
Q ss_pred cCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 005729 348 MGYLKDAEFVVSEMERSGV------LPD--EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAGY 415 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~ 415 (680)
.|+++++..++....+.-- .+. ......+...+...|++++|...+++........+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8999999999987754210 111 122233345567899999999999987753222222 2445566777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHH
Q 005729 416 RDRGEWQRTFQVLKEMKSSGV---EP--DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----GIE--P-DTITWNTLID 483 (680)
Q Consensus 416 ~~~g~~~~A~~l~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~ 483 (680)
...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 889999999999988764210 11 1234556677788899999999998876542 211 1 2234555666
Q ss_pred HHHHcCChhHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHH
Q 005729 484 CHFKCGRYDRAEELFEEMQER--GYFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTY-----TTLVD 553 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~ 553 (680)
.+...|++++|...+.+.... ...+ ....+..+...+...|+.++|...+.++...... .....+ ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 777889999999999887543 1112 2334445666778899999999999887543111 011111 11223
Q ss_pred HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-
Q 005729 554 IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS---NLALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKPD- 625 (680)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~- 625 (680)
.+...|+.+.|...+.. ......... ...+..+..++...|+.++|..++++... .|..++
T Consensus 662 ~~~~~g~~~~A~~~l~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQ-----------APKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HHHHCCCHHHHHHHHHh-----------cCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 44557777777766431 111100011 11245677788899999999999998875 233332
Q ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 626 VVTYTTLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 626 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
..+...+..++.+.|+.++|.+.+.+.++..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2456677788999999999999999998754
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=0.00037 Score=75.78 Aligned_cols=493 Identities=13% Similarity=0.057 Sum_probs=244.4
Q ss_pred CChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005729 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLM 216 (680)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (680)
.+...++..|-+.++.+ +.....|+.|...|....+...|.+. .+....+..++-.....|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34555665555555555 45556788888888877766667665 4555666778888889999999999988883
Q ss_pred HHHHHcCCCCChhhHHHHHHH--HHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005729 217 SKMRQDGYHCDFINYSLVIQS--LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (680)
Q Consensus 217 ~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (680)
-...+.. +.-...++-+-.+ +.+.++...++ .-|+...+. -+.|...|..+..+|..+|.+..|+++|.+....
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV--~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAV--CEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHH--HHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 3322211 0001111111111 12222222221 222222221 2457788899999999999999999999887763
Q ss_pred CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q 005729 295 GLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESG------LKPRTKAYNALLKGYVKMGYLKDAEFVVSEME----- 362 (680)
Q Consensus 295 g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 362 (680)
.|+.. .---..-..+..|.+.+|++.+......- ..--..++..+...+.-.|-..++..+++.-+
T Consensus 626 --rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 --RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred --CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44432 22223344567888999988888775421 11112233333333333343333333333322
Q ss_pred --HCCCCCCHHHHHHHHHHHHHcCCHH------HHHH-HHHHHHHCCCC--------------------CCHHHHHHHHH
Q 005729 363 --RSGVLPDEHTYSLLIDAYANAGRWE------SARI-VLKEMEVSHAK--------------------PNSFIYSRILA 413 (680)
Q Consensus 363 --~~g~~~~~~~~~~li~~~~~~g~~~------~A~~-~~~~m~~~~~~--------------------~~~~~~~~ll~ 413 (680)
.....-+...|-.+-+++.-.-..+ .... ++.+....+.- .+..+|..++.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 2111112222322222211000000 0000 01111111111 11223333333
Q ss_pred HHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 414 GYRD----R----GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH 485 (680)
Q Consensus 414 ~~~~----~----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 485 (680)
.|.+ . .+...|...+.+..+.. ..+..+|+.|.-. ...|.+.-+...|-.-.... +....+|..+.-.+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeE
Confidence 3322 1 12234555555544432 2344445444433 44455555555554443332 34556676666667
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HH--CCCCCCHHHHHHHHHHHHhcCCh
Q 005729 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM--RA--QGLLPNVVTYTTLVDIYGQSGRF 561 (680)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m--~~--~~~~p~~~~~~~li~~~~~~g~~ 561 (680)
.++.+++.|...|...+... +-|...|..........|+.-+...+|..- .. .|--++..-+.+........|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 77777777777777776654 445566655555555667777777666652 11 13333443333333344455565
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHH
Q 005729 562 DDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN-GLKPDVVTYT----TLMKAL 636 (680)
Q Consensus 562 ~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~----~l~~~~ 636 (680)
++-+...+......+. .++... |..-+...|...+...-+.+.+.+|.++..+.... ..+-|...|+ .+.+.+
T Consensus 940 e~~I~t~~ki~sAs~a-l~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 940 EESINTARKISSASLA-LSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred HHHHHHhhhhhhhHHH-HHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 5554443322221111 112211 22333346777777777777777777766665420 0122334444 334455
Q ss_pred HhcCCcCcHHH
Q 005729 637 IRVDKFHKVPA 647 (680)
Q Consensus 637 ~~~g~~~~A~~ 647 (680)
+..|.++.|..
T Consensus 1018 lslgefe~A~~ 1028 (1238)
T KOG1127|consen 1018 LSLGEFESAKK 1028 (1238)
T ss_pred hhhcchhhHhh
Confidence 56666665543
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=0.00011 Score=86.33 Aligned_cols=339 Identities=14% Similarity=0.036 Sum_probs=210.9
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHH
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL------KPRT--KAYNALLKGYV 346 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~p~~--~~~~~li~~~~ 346 (680)
....|+++.+.++++.+.......+..........+...|++++|...+....+.-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777777766552111111222223445556678999999998887654210 1111 12222334556
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHh
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGRWESARIVLKEMEVSHA---KP--NSFIYSRILAGYRD 417 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~ 417 (680)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887753111121 3445666777889999999999888764211 11 12345566777888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 005729 418 RGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--IEP--DTITWNTLIDCHF 486 (680)
Q Consensus 418 ~g~~~~A~~l~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~ 486 (680)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 23344556667777899999999988875431 112 2334555667788
Q ss_pred HcCChhHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 005729 487 KCGRYDRAEELFEEMQERGY-FPCTTTY-----NIMINLLGEQERWEDVKRLLGNMRAQGLLPN---VVTYTTLVDIYGQ 557 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~-~p~~~t~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 557 (680)
..|++++|.+.+.+...... ......+ ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999999988754210 0111111 1122444568899999999877654221111 1124567778889
Q ss_pred cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 558 SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (680)
Q Consensus 558 ~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (680)
.|++++|...++.. +... ...|..++. .++..+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~a----l~~~---~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEEL----NENA---RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHH----HHHH---HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999877633 3222 222333332 36777888899999999999999999874
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.5e-05 Score=75.17 Aligned_cols=398 Identities=15% Similarity=0.106 Sum_probs=235.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHc
Q 005729 200 ISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELD-GQLLNDVIVGFAKA 278 (680)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~-~~~~~~li~~~~~~ 278 (680)
.++.+..|+++.|+.+|-+..... ++|.+.|+--..+++..|++..++ -+.-....+.|+ ..-|+....++.-.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al----~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKAL----KDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHH----HHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 345677899999999999998876 348888988888999999885542 222333344555 56788888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHc---CCCCCHHHHHHHHHHHHHc----
Q 005729 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE---AEAVFEELKES---GLKPRTKAYNALLKGYVKM---- 348 (680)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~---- 348 (680)
|++++|+..|.+-++.. +.+...++-+..++.......+ --.++..+... ........|..++..+-+.
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999888752 2345566666666611100000 00011111100 0000112233333322211
Q ss_pred ------CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHH
Q 005729 349 ------GYLKDAEFVVSEM-----ERSG-------VLP------------D----------EHTYSLLIDAYANAGRWES 388 (680)
Q Consensus 349 ------g~~~~A~~~~~~m-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~ 388 (680)
.++..+...+... ...| ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0111111111100 0000 111 0 1123445666667777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHccCCHHHHHH
Q 005729 389 ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNV-------MIDTFGKYNCLHHAMA 461 (680)
Q Consensus 389 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~A~~ 461 (680)
|++-++...... .+..-++....+|...|.+.++....+...+.|. -...-|+. +..+|.+.++.+.+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 888887777654 4555666777778888888777777766665552 22222222 3335566677888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (680)
Q Consensus 462 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 540 (680)
.|.+.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|...+.++++..
T Consensus 320 ~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 320 YYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 88876654333322 223334455555544443322 221 111222456678899999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+-|...|..-.-+|.+.|.+..|++-.+...+ ..|+.. .|..=..++....+++.|.+.|++..+
T Consensus 389 -P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 389 -PEDARLYSNRAACYLKLGEYPEALKDAKKCIE-------------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred -CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33788999999999999999988865432211 245543 666667777778899999999999988
Q ss_pred CCCCCCHHHHHHHH
Q 005729 620 NGLKPDVVTYTTLM 633 (680)
Q Consensus 620 ~g~~p~~~~~~~l~ 633 (680)
. .|+..-+..-+
T Consensus 455 ~--dp~~~e~~~~~ 466 (539)
T KOG0548|consen 455 L--DPSNAEAIDGY 466 (539)
T ss_pred c--CchhHHHHHHH
Confidence 4 46554333333
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.0003 Score=72.31 Aligned_cols=375 Identities=12% Similarity=0.090 Sum_probs=198.3
Q ss_pred cccCCHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHH
Q 005729 174 GRSEKLYEAFLLSQR-QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKL 252 (680)
Q Consensus 174 ~~~g~~~~A~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l 252 (680)
.+.++.++|+....+ .+.+..+...-...+.+.|++++|+.+|+.+.+.+.. +.. -....+..+.... ..+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d-~~~r~nl~a~~a~------l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQD-EERRANLLAVAAA------LQV 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHH-HHHHHHHHHHHHh------hhH
Confidence 356777777766332 2333446666667788888888888888888776432 111 1111111111000 011
Q ss_pred HHHHHhCCCCcCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhCC--------CC-CCHH-----HHHHHHHHHHhcCC
Q 005729 253 YKEIECDKIELDGQLLND---VIVGFAKAGDASKAMRFLGMAQGVG--------LS-PKTA-----TYAAVITALSNSGR 315 (680)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~g--------~~-p~~~-----~~~~li~~~~~~g~ 315 (680)
..+......+ ..+|.. ....+...|++.+|+++++...+.+ .. -+.. .-.-+.-++-..|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0122222222 222322 3445667788999998888773221 11 0111 11233445667888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHHCCC----------CCCHHHH-HHHHHH
Q 005729 316 TIEAEAVFEELKESGLKPRTKA----YNALLKGYVKMGYLK-DAEFVVSEMERSGV----------LPDEHTY-SLLIDA 379 (680)
Q Consensus 316 ~~~A~~l~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~-~A~~~~~~m~~~g~----------~~~~~~~-~~li~~ 379 (680)
-.+|..+|...++... +|... -|.|+..-....-++ .++..++....... ....... +.++..
T Consensus 240 t~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887653 34322 233332211111111 11111111111000 0011111 222222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 005729 380 YANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (680)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 458 (680)
| .+..+.+.++...... ..|....-+.+..++.. .....++.+++...-+..-.-...+.-.++......|+++.
T Consensus 319 ~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred H--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2 2334444444433321 12333333333333322 22467777777776655322224555666777788999999
Q ss_pred HHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcC
Q 005729 459 AMAAFD--------RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMIN----LLGEQE 524 (680)
Q Consensus 459 A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~----~~~~~g 524 (680)
|.+++. .+.+.+..|-.+ .++...|.+.++-+.|..++.+.... .-.+.......++. .-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999998 666666555544 45666777777777777777766432 11222334444443 335679
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 525 RWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 525 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
+-++|..+++++.+.+ ++|..+...++.+|++. +++.|..+
T Consensus 473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 9999999999999863 56889999999999887 56666654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=0.00025 Score=67.90 Aligned_cols=315 Identities=14% Similarity=0.125 Sum_probs=163.2
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HH
Q 005729 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY-NA 340 (680)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~ 340 (680)
.++.-.--+-..+...|++.+|+.-|....+. .|+ -.++---...|...|+-..|+.=+...++. +||-..- ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 44555556677788889999999999888764 333 334445567888899999999988888875 6774322 22
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (680)
-...+.++|.+++|..-|+..++.. |+..+ ...++.+.-..++-..+. ..+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l~----------------~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVLV----------------QQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHHH----------------HHHHHHhcCCc
Confidence 2345789999999999999998864 22111 111111111111111111 11222333444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005729 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (680)
...|+....++.+.. +.|...|..-..+|...|++..|+.-+....+.. .-+..++--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444444444444432 3344444444444444555444444444433332 12233333334444444444444444444
Q ss_pred HHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 005729 501 MQERGYFPCTTT----YNIM---------INLLGEQERWEDVKRLLGNMRAQGLLPN---VVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 501 m~~~~~~p~~~t----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A 564 (680)
-++.+ ||... |..+ +......++|.++..-.+...+...... ...+..+-.+|...|++.+|
T Consensus 249 CLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 44331 22211 1100 1112344556666666666555432211 22333444555566666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 565 IECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 565 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+...... .+ +.|+ ..++.--..+|.-...+++|+.-|+.+.+
T Consensus 327 iqqC~ev-----------L~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 327 IQQCKEV-----------LD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHH-----------Hh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6543311 11 3454 33666666666666667777776666665
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.0001 Score=79.75 Aligned_cols=401 Identities=13% Similarity=0.173 Sum_probs=244.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 005729 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA 278 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (680)
|+.-.-+.++.+--+.+++...+.|. .|..+++++.+.|..+++-.+.. + .-+...=+..+.-||..
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~f----L--------keN~yYDs~vVGkYCEK 910 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERF----L--------KENPYYDSKVVGKYCEK 910 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHh----c--------ccCCcchhhHHhhhhcc
Confidence 44445567777777888888888874 58888888888877766554321 0 11111112233446665
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCChHHH-----------HHHHHHHHHcCCC--CCHHHHHHH
Q 005729 279 GDASKAMRFLGMAQG----VGLSPKTATYAAVITALSNSGRTIEA-----------EAVFEELKESGLK--PRTKAYNAL 341 (680)
Q Consensus 279 g~~~~A~~~~~~~~~----~g~~p~~~~~~~li~~~~~~g~~~~A-----------~~l~~~m~~~g~~--p~~~~~~~l 341 (680)
.++.-|.-.|++-.- .++.-....|....+-+.+..+.+-- .++.++..+.+++ .|..-....
T Consensus 911 RDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~t 990 (1666)
T KOG0985|consen 911 RDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVT 990 (1666)
T ss_pred cCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHH
Confidence 555444333322100 00011112233333333333333222 2333333333332 244445556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 342 LKGYVKMGYLKDAEFVVSEMERSG--VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
+.++...+-..+-+++++++.-.+ +.-+....|.|+-.-.+. +.....+..+++..-+ .| .+...+...+
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~ia~iai~~~ 1062 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DIAEIAIENQ 1062 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hHHHHHhhhh
Confidence 777777888888888888876322 122333445555444443 4445555555554332 12 2345566777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005729 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (680)
-+++|+.+|++. ..+....+.|++- .+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-
T Consensus 1063 LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 888899988874 3455666666654 345666666555443 45679999999999999999988775
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 005729 500 EMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAF 579 (680)
Q Consensus 500 ~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~ 579 (680)
+. -|+..|.-+++...+.|.|++..+++....+..-+|. +-+.|+-+|++.+++.+-.+++.
T Consensus 1129 ka------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---------- 1190 (1666)
T KOG0985|consen 1129 KA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---------- 1190 (1666)
T ss_pred hc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc----------
Confidence 43 3678899999999999999999999988887755554 34678899999999888766653
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCC
Q 005729 580 RVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTP 659 (680)
Q Consensus 580 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 659 (680)
-||......+.+-|...|.++.|.-+|. +..-|..|...+...|++..|...-++.-
T Consensus 1191 --------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1191 --------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred --------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 4677777777777777777777766554 33445666777777777777766665543
Q ss_pred CHHHHHHHHHHHHHHH
Q 005729 660 DRKARAMLRSALRYMK 675 (680)
Q Consensus 660 d~~~~~~l~~a~~~~k 675 (680)
+..||..+--||-+.+
T Consensus 1248 s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKE 1263 (1666)
T ss_pred chhHHHHHHHHHhchh
Confidence 2456666666665443
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.0004 Score=75.41 Aligned_cols=341 Identities=13% Similarity=0.095 Sum_probs=170.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 005729 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSK- 218 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 218 (680)
++++......++..+..| ..++.+||.|...|..+++-.+-+.- .|+.-=+..+.-||...++.-|.-.|++
T Consensus 851 RNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLk-----eN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLK-----ENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred hhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcc-----cCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 345666666777777777 45678899998888776654443321 0111111223333333333222222211
Q ss_pred ------------------HHHc-CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHH
Q 005729 219 ------------------MRQD-GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE--LDGQLLNDVIVGFAK 277 (680)
Q Consensus 219 ------------------m~~~-g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~--~~~~~~~~li~~~~~ 277 (680)
..+. --+.|...|..++. ... .--+++.+..+..+++ .|..-.+..+.++..
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~---e~n----~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN---EEN----PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh---ccC----hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 0000 00123344444431 000 1124566666665442 456666777888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005729 278 AGDASKAMRFLGMAQGVGLSPKTA-----TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (680)
.+-+.+-+++++++.- .+++. .-|.||-...+. +.....+..+++..-+ .|+ +.......+-++
T Consensus 997 adLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYE 1065 (1666)
T ss_pred cCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHH
Confidence 8888888888887763 23322 223333333333 2333444444443321 112 223344445566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 353 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
+|..+|++... +....+.||.- -+.++.|.+.-++. .....|..+..+-.+.|.+.+|.+-|-+
T Consensus 1066 EAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik-- 1129 (1666)
T KOG0985|consen 1066 EAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK-- 1129 (1666)
T ss_pred HHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh--
Confidence 66666665432 33444444432 24445554444332 1334566666666666666666655543
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005729 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT 512 (680)
Q Consensus 433 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 512 (680)
..|+..|.-+++...+.|.+++..+.+....+..-.|.+. ..||-+|++.++..+-.++.. .||...
T Consensus 1130 ----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~ 1196 (1666)
T KOG0985|consen 1130 ----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVAN 1196 (1666)
T ss_pred ----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchh
Confidence 3455566666666666666666666666555554344332 356666666666555444331 244444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 005729 513 YNIMINLLGEQERWEDVKRLLG 534 (680)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~~~~ 534 (680)
...+.+-|...|.++.|.-++.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHH
Confidence 4555555555555554444443
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=1.5e-06 Score=85.68 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 005729 310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGR 385 (680)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~ 385 (680)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33345555554444321 133444444445555555555555555554431 12 122222222221 123
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 386 WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM 431 (680)
Q Consensus 386 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m 431 (680)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444444444322 2334444444444444444444444444443
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=4.1e-06 Score=82.52 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNI 515 (680)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 515 (680)
.......+..|.+.++++.|.+.++.|.+.. .|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 3444444555555555555555555554431 222 22222222221 22456666666665544 2455556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005729 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF 561 (680)
Q Consensus 516 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 561 (680)
+..++...|++++|..++.+....+. -+..+...++-+....|+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCC
Confidence 66666666666666666666554321 2445555555555555555
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=9e-05 Score=69.45 Aligned_cols=285 Identities=14% Similarity=0.095 Sum_probs=159.8
Q ss_pred HHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHh
Q 005729 166 YSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV-IQSLTR 240 (680)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~ 240 (680)
+.+.+-.+.+..++.+|+.+ .+..+.+......+...|.+..++..|-+.|+++-.. .|...-|... .+++.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 34455555667777787776 4455567777888888888888888888888888765 3554444322 334455
Q ss_pred cCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005729 241 TNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV----GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316 (680)
Q Consensus 241 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 316 (680)
.+.+.++ .++...|... ....+..+. .....+++..+..+.++.... -+..+.+.......+.|++
T Consensus 91 A~i~ADA--LrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 91 ACIYADA--LRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred hcccHHH--HHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence 5555433 3444444321 111111111 122446666666666665532 2444555555666778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CH-------------
Q 005729 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-------------DE------------- 370 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-------------~~------------- 370 (680)
++|.+-|+...+-+---....||..+.. .+.|+.+.|.+...+++++|++. |+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 8888888877664433345667655544 45577788888887777766431 11
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 371 --HTYSLLIDAYANAGRWESARIVLKEMEVS-HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447 (680)
Q Consensus 371 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 447 (680)
..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.-. .+++.+..+-+.-+.+.. +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 11222233345566677776666666322 12345555554432221 223333333333333333 34456677777
Q ss_pred HHHHccCCHHHHHHHHHH
Q 005729 448 DTFGKYNCLHHAMAAFDR 465 (680)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~ 465 (680)
-.||++.-++.|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 777777777776666543
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=7.5e-06 Score=83.62 Aligned_cols=257 Identities=17% Similarity=0.111 Sum_probs=154.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005729 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRT 424 (680)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 424 (680)
+.+.|++.+|.-.|+...+.+.. +...|..|...-...++-..|+..+.+..+.. +.|......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34455555555555555544322 45555555555555555555555555555443 22444555555555555555555
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005729 425 FQVLKEMKSSGVE--------PDTHFYNVMIDTFGKYNCLHHAMAAFDRML-SEGIEPDTITWNTLIDCHFKCGRYDRAE 495 (680)
Q Consensus 425 ~~l~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~ 495 (680)
++.++.......+ ++...-.. ..+.....+....++|-++. ..+..+|......|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555554332100 00000000 11111222344455555554 4444578888888988899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 005729 496 ELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (680)
Q Consensus 496 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (680)
+.|+..+... +-|..+||.|...++...+.++|...|.+.++ ++|. +.+...|.-.|...|.+++|.+.|- .
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL----~ 523 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL----E 523 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH----H
Confidence 9999999876 67889999999999999999999999999998 5675 4566678888999999999987764 2
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 575 AVNAFRVMRTD--GLKPSNLALNSLINAFGEDQRDAEAFA 612 (680)
Q Consensus 575 a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~ 612 (680)
|+.+-++-... +..++...|.+|=.++.-.++.+-+.+
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 33222221111 112234466666666665666554433
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=0.00088 Score=73.01 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 005729 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTP--LTYNALISACARNDDLEKALNL 215 (680)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~ 215 (680)
+...|+..|..+.+.+ +.+........+.|++...+++|... .+..+.-. ..|--..-.|...++...|+.-
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 5566777777777776 66777888889999999998888765 11111111 1233344455666777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ 292 (680)
Q Consensus 216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (680)
|+...+.. +-|...|..+..+|.++|++..+ .++|.+...-.. .+...--....+-+..|++.+|+..+....
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A--lKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHA--LKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehH--HHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77766653 22455666677777777776543 366655543211 111121222333455666666666665544
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.4e-07 Score=59.14 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005729 296 LSPKTATYAAVITALSNSGRTIEAEAVFEEL 326 (680)
Q Consensus 296 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 326 (680)
+.||..||+++|++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=5.7e-05 Score=84.51 Aligned_cols=227 Identities=12% Similarity=0.061 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS-GVE---PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (680)
Q Consensus 402 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 477 (680)
+.+...|-..|......++.++|.++.++.+.. +++ --...|.++++.-...|.-+...++|+++.+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 445678888899999999999999999997653 211 234677788887778888899999999998742 23456
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYG 556 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 556 (680)
|..|...|.+.+.+++|-++++.|.++- .-....|...+..+.+..+-+.|..++.++++.-.+- ........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999873 3567889999999999999999999999998852221 3456667778888
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 005729 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV--VTYTTLMK 634 (680)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~ 634 (680)
+.|+.++++.+|++.+.. .+-....|+.+|+.-.++|+.+.+..+|++....++.|-. ..|...+.
T Consensus 1612 k~GDaeRGRtlfEgll~a------------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA------------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred hcCCchhhHHHHHHHHhh------------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 999999999888765431 2223458999999999999999999999999998887743 34555554
Q ss_pred HHHhcCCcC
Q 005729 635 ALIRVDKFH 643 (680)
Q Consensus 635 ~~~~~g~~~ 643 (680)
.--+.|+-+
T Consensus 1680 yEk~~Gde~ 1688 (1710)
T KOG1070|consen 1680 YEKSHGDEK 1688 (1710)
T ss_pred HHHhcCchh
Confidence 444445433
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.002 Score=65.71 Aligned_cols=411 Identities=12% Similarity=0.103 Sum_probs=240.2
Q ss_pred HHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005729 152 WLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD 227 (680)
Q Consensus 152 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 227 (680)
.-++.+ |.|..+|+.||.-+... .+++++.. ....+-.+..|..-|..-.+.++++....+|.+....-+ +
T Consensus 11 ~rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--n 85 (656)
T KOG1914|consen 11 ERIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--N 85 (656)
T ss_pred HHHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--h
Confidence 334445 77788899999888777 88888776 334455677999999999999999999999999877643 4
Q ss_pred hhhHHHHHHHHHh-cCCCCh--HHHHHHHHH-HHhCCCCc-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHh
Q 005729 228 FINYSLVIQSLTR-TNKIDS--SLLQKLYKE-IECDKIEL-DGQLLNDVIVG---------FAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 228 ~~~~~~ll~~~~~-~g~~~~--~~~~~l~~~-~~~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 293 (680)
...|..-|.-.-+ .++... ...-+.|+. +.+.|+++ .-..|+..+.. |....+.+...+++.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 4555555533222 222222 111233433 33345433 23456665543 3344455666777777764
Q ss_pred CCCC------CCHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--cCCCCCHH---------------HHHHHHH
Q 005729 294 VGLS------PKTATYAAVITALS-------NSGRTIEAEAVFEELKE--SGLKPRTK---------------AYNALLK 343 (680)
Q Consensus 294 ~g~~------p~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~--~g~~p~~~---------------~~~~li~ 343 (680)
.-+. .|-..|..-|+... +...+..|.++++++.. +|...+.. .|..+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 2111 11112222222211 23345567777777643 23222111 2444443
Q ss_pred HHHHcCCH--------HHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHCCCC
Q 005729 344 GYVKMGYL--------KDAEFVVSEME-RSGVLPDEHTYS-----LLIDAYANAGR-------WESARIVLKEMEVSHAK 402 (680)
Q Consensus 344 ~~~~~g~~--------~~A~~~~~~m~-~~g~~~~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~~~~ 402 (680)
.--..+-- ....-++++.. -.+..|+..... ..-+.+...|+ .+++..+++.....-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 32221110 11111222221 222233221110 11123334444 34555666555433222
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 005729 403 PNSFIYSRILAGYRDR---GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITW 478 (680)
Q Consensus 403 ~~~~~~~~ll~~~~~~---g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ 478 (680)
.+..+|..+...--.. ...+.....++++...-...-.-+|..+++...+..-+..|+.+|.+..+.+..+ ++..+
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 2333333333221111 1355666677776654333334577788888888888999999999999887666 77888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYG 556 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~ 556 (680)
+++|.-|| .++.+-|.++|+--+.+- .-+..--...+.-+...++-..+..+|++.+..++.++ ..+|..+++-=+
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 99998877 577899999999876652 23344455677888889999999999999998866654 578999999999
Q ss_pred hcCChHHHHHHHh
Q 005729 557 QSGRFDDAIECLE 569 (680)
Q Consensus 557 ~~g~~~~A~~~~~ 569 (680)
.-|++..++++-+
T Consensus 484 ~vGdL~si~~lek 496 (656)
T KOG1914|consen 484 NVGDLNSILKLEK 496 (656)
T ss_pred hcccHHHHHHHHH
Confidence 9999988877644
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.8e-07 Score=58.55 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 586 GLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 586 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (680)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=0.00012 Score=82.13 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKP-----RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS 374 (680)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 374 (680)
...|...|....+.++.++|.+++++.+.. +.+ -.-.|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 445666666666666666666666665532 111 12345555555555565566666666666531 1234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 005729 375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD---THFYNVMIDTFG 451 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~ 451 (680)
.|...|.+.+..++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+..+. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 66666666666666666666665542 234455666666666666666666666655443 222 222333333444
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005729 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (680)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (680)
+.|+.+.++.+|+...... +.-...|+..|+.-.++|+.+.+..+|++....++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5566666666665555432 2234456666666666666666666666665555443
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0028 Score=64.74 Aligned_cols=418 Identities=10% Similarity=0.078 Sum_probs=216.3
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC
Q 005729 183 FLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE 262 (680)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~ 262 (680)
....+..+-|..+|+.||+-+... ..+++.+.+++|... ++-....|..-+..-.+..+++. ++.+|.++.....
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~--VEkLF~RCLvkvL- 84 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFES--VEKLFSRCLVKVL- 84 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHh-
Confidence 344566788999999999977666 999999999999864 33455677778888888888743 6789998877644
Q ss_pred cCHHHHHHHHHHHHH-cCCHHH----HHHHHHHH-HhCCCCCC-HHHHHHHHHHH---------HhcCChHHHHHHHHHH
Q 005729 263 LDGQLLNDVIVGFAK-AGDASK----AMRFLGMA-QGVGLSPK-TATYAAVITAL---------SNSGRTIEAEAVFEEL 326 (680)
Q Consensus 263 ~~~~~~~~li~~~~~-~g~~~~----A~~~~~~~-~~~g~~p~-~~~~~~li~~~---------~~~g~~~~A~~l~~~m 326 (680)
+...|..-++.-.+ .|+... -.+.|+.. .+.|+.+- ...|+..+..+ ..+.+++...++|+++
T Consensus 85 -nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 85 -NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred -hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 45566665553332 233333 23344433 34554443 23355554433 3344566778888888
Q ss_pred HHcCCCCCHHHHHH------HHHHH-------HHcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHH
Q 005729 327 KESGLKPRTKAYNA------LLKGY-------VKMGYLKDAEFVVSEMER--SGVLPDEHT---------------YSLL 376 (680)
Q Consensus 327 ~~~g~~p~~~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~l 376 (680)
....+.-=...|+. =|+.. -+...+..|.++++++.. .|...+..+ |-.+
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 75432211122221 11111 123345667777776653 332211111 2222
Q ss_pred HHHHHHcCCH--------HHHHHHHHHHH-HCCCCCCHHHH-----HHHHHHHHhcCC-------HHHHHHHHHHHHHCC
Q 005729 377 IDAYANAGRW--------ESARIVLKEME-VSHAKPNSFIY-----SRILAGYRDRGE-------WQRTFQVLKEMKSSG 435 (680)
Q Consensus 377 i~~~~~~g~~--------~~A~~~~~~m~-~~~~~~~~~~~-----~~ll~~~~~~g~-------~~~A~~l~~~m~~~~ 435 (680)
|..=-..+-. ....-.+++.. -.+..|+.... ...-..+...|+ -+++..+++.....-
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 2211111100 00001111111 11111211100 001112222332 233344444333221
Q ss_pred CCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHH
Q 005729 436 VEPDTHFYNVMIDTFG---KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP-CTT 511 (680)
Q Consensus 436 ~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~ 511 (680)
...+..+|..+.+.-- +-...+.....++++......--..+|..+|+.-.+..-++.|..+|.+..+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 1222223322222111 111244455555555543222223456666666666667777777777777665555 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 005729 512 TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591 (680)
Q Consensus 512 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~ 591 (680)
.+++++.-+|. ++..-|.++|+--++. +.-+..--...++-+...++-..+..+ |+.....++.|+.
T Consensus 404 Va~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~L-----------FEr~l~s~l~~~k 470 (656)
T KOG1914|consen 404 VAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARAL-----------FERVLTSVLSADK 470 (656)
T ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHH-----------HHHHHhccCChhh
Confidence 67777776664 5566777777765554 222344445566666666666655544 4444444455554
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 592 --LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 592 --~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
..|..++.--..-|++..++++-+++..
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3777777777778888888887777664
No 113
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=0.00028 Score=70.58 Aligned_cols=203 Identities=8% Similarity=0.010 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHH
Q 005729 314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW--ESAR 390 (680)
Q Consensus 314 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~ 390 (680)
++.++|+.+..++++.. +-+..+|+.--..+...| ++++++..++++.+.+.+ +..+|+.....+.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 34444444444444432 112223333333333333 344555555554443321 333344333333333331 3444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CC----HHHHHHHH
Q 005729 391 IVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---NC----LHHAMAAF 463 (680)
Q Consensus 391 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~ 463 (680)
.+++++.+.+ +-|..+|+...-.+...|+++++++.++++.+.+ +.+...|+.....+.+. |. .+......
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 4444444433 2244455544444555555555555555555443 23333333333332222 11 22344444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 464 DRMLSEGIEPDTITWNTLIDCHFKC----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (680)
Q Consensus 464 ~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 522 (680)
..++... +-|...|+.+...+... ++..+|.+.+.+..+.+ +.+......|+..|+.
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4444432 23455565555555542 23344666665555443 3445555556666554
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=5.5e-05 Score=79.50 Aligned_cols=220 Identities=12% Similarity=0.089 Sum_probs=167.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM 446 (680)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 446 (680)
+|--..-..+...+...|-...|..+|+++. .|..++.+|+..|+..+|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444455667788889999999999998765 5777889999999999999998887774 7899999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
.+.......+++|.++++..... .-..+.....+.++++++.+.|+.-.+.. +....+|....-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 98888888889999888876532 11122222334788999999998877765 55677888888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 527 EDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQ 605 (680)
Q Consensus 527 ~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 605 (680)
..|.+.|..-... .| +...||.+-.+|.+.|+-.+|...+. +..+.+ .-+-..|...+....+.|
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~-----------EAlKcn-~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLK-----------EALKCN-YQHWQIWENYMLVSVDVG 601 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHH-----------HHhhcC-CCCCeeeechhhhhhhcc
Confidence 9999999888873 55 46789999999999988888876654 333332 223346777777888899
Q ss_pred CHHHHHHHHHHHHH
Q 005729 606 RDAEAFAVLQYMKE 619 (680)
Q Consensus 606 ~~~~A~~~~~~m~~ 619 (680)
.+++|++.+.++..
T Consensus 602 e~eda~~A~~rll~ 615 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLD 615 (777)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999888874
No 115
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00042 Score=69.35 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=154.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSG-RTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 345 (680)
++.+-..+...+..++|+.+.+.+++. .|+ ..+|+....++...| ++++++..++++.+... .+..+|+.-.-.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 344444556678899999999998875 454 456777777777777 57999999999988653 4666777666566
Q ss_pred HHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC
Q 005729 346 VKMGYL--KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR---GE 420 (680)
Q Consensus 346 ~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~ 420 (680)
.+.|+. +++..+++++.+.+. -|..+|+...-.+...|+++++++.++++.+.++ .|...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 666653 678888988887764 3888999999999999999999999999998764 4566676666555544 22
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 421 ----WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY----NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (680)
Q Consensus 421 ----~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 487 (680)
.++.++...++.... +-|...|+.+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 246677776766654 56778888888877763 34466888887776644 3466677778888875
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=2.6e-05 Score=81.82 Aligned_cols=239 Identities=14% Similarity=0.119 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLI 377 (680)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 377 (680)
|--..-..+...+...|-...|..+|+++. .|..+|.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333444566778888899999999998764 4667889999999999999999888874 78999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 005729 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 457 (680)
+.....--+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.. +--..+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 9888888899999998876432 11112222334789999999998866654 456778888888889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 458 HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 458 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
.|.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|-..+-...+.|.+++|.+.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999988653 3356789999999999999999999999999887 4456677777778889999999999999987
Q ss_pred HCC-CCCCHHHHHHHHHHHHh
Q 005729 538 AQG-LLPNVVTYTTLVDIYGQ 557 (680)
Q Consensus 538 ~~~-~~p~~~~~~~li~~~~~ 557 (680)
... ...|..+...++....+
T Consensus 615 ~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 615 DLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HhhhhcccchhhHHHHHHHHh
Confidence 641 12255556555555443
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0062 Score=66.09 Aligned_cols=216 Identities=18% Similarity=0.078 Sum_probs=145.0
Q ss_pred CCChHHHHHHHHHHHHCCCCCchHHHHHHHHHH--hcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005729 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHA--LGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKAL 213 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (680)
.+.+..|++-...+.+.- |+. .+...+.+ +.+.|+.++|..+ ......|..|..++-.+|.+.|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456788888888887764 332 23333333 4678999999876 2233347889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChH--HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC-C---------H
Q 005729 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSS--LLQKLYKEIECDKIELDGQLLNDVIVGFAKAG-D---------A 281 (680)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~--~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~ 281 (680)
.+|++..+. .|+......+..++.+.+.+... .+.++++ .++-+...+=++++.+.+.- . .
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999876 47788888888899887766432 2233443 23344444444444444331 1 2
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 282 SKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVF-EELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVS 359 (680)
Q Consensus 282 ~~A~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 359 (680)
.-|.+.++.+.+.+ ---+..-.......+...|++++|++++ ....+.-.+-+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 24555666666543 2223333444556667788899999998 444444444566666777888899999999999999
Q ss_pred HHHHCCC
Q 005729 360 EMERSGV 366 (680)
Q Consensus 360 ~m~~~g~ 366 (680)
++...|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 9988763
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00058 Score=63.47 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Q 005729 306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN--- 382 (680)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 382 (680)
-...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+.. +..+.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 3345555566666655554411 22222222334445555566666666665532 44444445444443
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 383 -AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (680)
Q Consensus 383 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 434 (680)
.+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++....
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555432 3455555555555555555555555555555544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=0.00013 Score=70.62 Aligned_cols=186 Identities=13% Similarity=0.041 Sum_probs=122.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HH
Q 005729 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR-TK 336 (680)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~ 336 (680)
.....+-.+...+.+.|++++|...|+.+... .|+ ..++..+...+.+.|++++|...++++.+.... +. ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 35566777788888999999999999988764 343 246777888999999999999999999875321 11 12
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 337 AYNALLKGYVKM--------GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY 408 (680)
Q Consensus 337 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 408 (680)
++..+..++.+. |+.++|.+.++.+.+.... +...+..+..... .... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 455555555554 6788889999888875322 2223222211100 0000 00 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSG--VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (680)
..+...+.+.|++++|...++...... .+.....+..+..++.+.|+.++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 245566788888888888888877652 1223567778888888888888888888777654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=0.00031 Score=78.23 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=131.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------
Q 005729 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESG----------- 330 (680)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------- 330 (680)
.+...+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+++..+ .+...-
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 34667788888888888888888888866653 45433 333333456666665555444 222210
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 005729 331 -------LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP 403 (680)
Q Consensus 331 -------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 403 (680)
..-+...+-.+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 01122455566667777777777777777777766 33677777777777777 777777777665532
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 005729 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GIEPDTITWNTLI 482 (680)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li 482 (680)
+...+++..+.++|.++.... |+ +.+.-.++.+.+... |...-+.++-.+-
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 555556666666666666542 21 122222333333322 2233445556666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (680)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 521 (680)
..|-..++++++..+++.+++.. +-|.....-++..|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 66777777777777777777765 445555555555554
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=0.00081 Score=75.08 Aligned_cols=82 Identities=7% Similarity=0.137 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
..+..+..+|-+.|+.+++..+|+++++.. +-|+...|.+...|... ++++|.+++.+.+.. +
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 345555555555555555555555555554 33455555555555555 556665555554443 3
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005729 521 GEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (680)
...+++..+..+|.++...
T Consensus 180 i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HhhhcchHHHHHHHHHHhc
Confidence 3444555555555555553
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=0.00014 Score=70.35 Aligned_cols=65 Identities=22% Similarity=0.114 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMGYLKDAEFVVSEMERS 364 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 364 (680)
....+..+...+.+.|++++|...|+++..... .+ ...+..+...+.+.|++++|...++++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345566666667777777777777777665421 11 134555666666677777777777776654
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=0.00026 Score=65.77 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 005729 383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNC--LHHA 459 (680)
Q Consensus 383 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A 459 (680)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344444444444444433 3345555555555555555555555555555543 33445555555442 34444 3556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 460 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
.+++++..+.. +.+...+..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666655544 2244555555556666666666666666665553
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.22 E-value=0.00029 Score=65.50 Aligned_cols=154 Identities=11% Similarity=0.178 Sum_probs=118.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 005729 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (680)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 456 (680)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45677888887765544332211 0 01223566778888888877665 78899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCH-FKCGR--YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 457 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999876 34777888888764 67777 599999999999987 667888999999999999999999999
Q ss_pred HHHHHCCCCCCHH
Q 005729 534 GNMRAQGLLPNVV 546 (680)
Q Consensus 534 ~~m~~~~~~p~~~ 546 (680)
+++.+.. .|+..
T Consensus 168 ~~aL~l~-~~~~~ 179 (198)
T PRK10370 168 QKVLDLN-SPRVN 179 (198)
T ss_pred HHHHhhC-CCCcc
Confidence 9999873 34443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0034 Score=58.53 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=79.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK--- 487 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 487 (680)
-...|+..|++++|++..... -+......-+..+.+....+.|.+.++.|.+. -+..+.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 334455555666655555441 12222222233344455566666666666642 244455555555543
Q ss_pred -cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005729 488 -CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 488 -~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (680)
.+.+.+|.-+|++|.++- +|+..+.+....++...|++++|..++++.+.+... ++.+...++-.-...|...++.
T Consensus 185 ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 344666777777776542 566667776666677777777777777777665322 5556655555555566554443
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.019 Score=62.53 Aligned_cols=224 Identities=17% Similarity=0.200 Sum_probs=147.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 005729 203 CARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSL--TRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGD 280 (680)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (680)
....+++.+|+....++.+. .|+. .|..+++++ .+.|+.+++. .+++....-+.. |..+...+-.+|...|+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~--~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEAL--KLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHH--HHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 35677889999988887775 3554 455566655 4677776654 666665554444 88889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------
Q 005729 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY---------- 350 (680)
Q Consensus 281 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---------- 350 (680)
.++|..+|++..+. .|+..-...+..+|.+.+.+.+-.++--+|.+ ..+-+...|=+++..+.+.-.
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999998875 57777777778888887777654333333333 233344554445555544321
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 351 LKDAEFVVSEMERSG-VLPDEHTYSLLIDAYANAGRWESARIVLK-EMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVL 428 (680)
Q Consensus 351 ~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 428 (680)
..-|.+.++.+.+.+ .--+..-.-.-...+...|++++|++++. ...+.-...+...-+.-+..+...++|.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 334666777776543 11122222223345566788999999983 4444444455566667788888899999999999
Q ss_pred HHHHHCC
Q 005729 429 KEMKSSG 435 (680)
Q Consensus 429 ~~m~~~~ 435 (680)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 9988876
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00057 Score=63.57 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
..+-..+...|+-+....+....... ...|....+..++...+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44455555666666666665554322 23344455556666677777777777777766554 66677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
|+.+.|..-|.+..+.. .-+....|.+.-.|.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777766653 2344556666666666777777777777766654 335555566666666777777777665
Q ss_pred HHH
Q 005729 534 GNM 536 (680)
Q Consensus 534 ~~m 536 (680)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.0011 Score=73.32 Aligned_cols=219 Identities=15% Similarity=0.139 Sum_probs=145.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH--HHHHHHHHHhCCCCc
Q 005729 187 QRQRLTPLTYNALISACARNDDLEKA-LNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL--LQKLYKEIECDKIEL 263 (680)
Q Consensus 187 ~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~--~~~l~~~~~~~~~~~ 263 (680)
.++..++...+.+=.+.+.-|..++| .++..++.+ .+.+.+.+.... .-++.+.. +....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 84 (694)
T PRK15179 22 GGPASGPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYV--RRYPH 84 (694)
T ss_pred CCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHH--Hhccc
Confidence 34444555666666667777777666 344444432 222223221111 01222222 23456
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005729 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342 (680)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 342 (680)
++..+-.|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|+..+++..... +-+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 6888888888888889999999999888874 565 5567788888889999999999998888764 34566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (680)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (680)
.++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.. .+....|+..+ ++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 88888899999999999988743 2357888888888888999999999888887643 23334444433 2333
Q ss_pred HHHHHHHHHHH
Q 005729 423 RTFQVLKEMKS 433 (680)
Q Consensus 423 ~A~~l~~~m~~ 433 (680)
.-..+++.+.-
T Consensus 234 ~~~~~~~~~~~ 244 (694)
T PRK15179 234 ADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHcCc
Confidence 44555555543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.00096 Score=67.48 Aligned_cols=146 Identities=11% Similarity=0.084 Sum_probs=104.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 005729 450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC-TTTYNIMINLLGEQERWED 528 (680)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~ 528 (680)
+...|+.+.|+..++.+.+.. +-|...+....+.+.+.++.++|.+.++++.... |+ ......+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 345577778888888777653 4466667777788888888888888888888764 44 5566667778888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 529 VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA 608 (680)
Q Consensus 529 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 608 (680)
|..+++...... +-|+..|..|.++|...|+..++... ....|...|+++
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-----------------------------~AE~~~~~G~~~ 442 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-----------------------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-----------------------------HHHHHHhCCCHH
Confidence 888888887763 44778888888888888887776543 223556678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHH
Q 005729 609 EAFAVLQYMKENGLKPDVVTY 629 (680)
Q Consensus 609 ~A~~~~~~m~~~g~~p~~~~~ 629 (680)
+|+..+....+. ++++..+|
T Consensus 443 ~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 443 QAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHh-ccCCcHHH
Confidence 888887777764 34444443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.0015 Score=72.22 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=157.2
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005729 230 NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITA 309 (680)
Q Consensus 230 ~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 309 (680)
.+..+=.+++..|..+++ .++++.+..+ ++..........+++.-...... ....+...+..|...
T Consensus 30 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i 95 (694)
T PRK15179 30 ILDLLEAALAEPGESEEA-GRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARA 95 (694)
T ss_pred HHhHHHHHhcCcccchhH-HHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHH
Confidence 333333445555555433 4666666542 33333333333333332222222 234568888899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA 389 (680)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 389 (680)
..+.|++++|+.+++...+.. +-+......+...+.+.+++++|...+++....... +......+..++.+.|++++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHH
Confidence 999999999999999998863 335667788888999999999999999999887533 677788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 005729 390 RIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (680)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (680)
..+|++....+ +-+..++..+...+.+.|+.++|...|+...... .+...-|+..+. ++..-...++++.-.
T Consensus 174 ~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 174 DACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcCcc
Confidence 99999998743 3457888899999999999999999999987653 345555554432 233444455555432
Q ss_pred ----CCCCCHHHHHHHHHHHHHc
Q 005729 470 ----GIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 470 ----~~~~~~~~~~~li~~~~~~ 488 (680)
|....+.....+|.-|.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 246 GDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cccCCCceeeeeHHHHHHHHhhc
Confidence 2233344555556555544
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5.6e-06 Score=52.61 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDF 228 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 228 (680)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.0013 Score=61.35 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=131.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 488 (680)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...|.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55667777788877777776664432 24555666778899999999999999999998765 67999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005729 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (680)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (680)
|+++.|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998874 4567788888888999999999999999998764 337888889999999999999998875
Q ss_pred h
Q 005729 569 E 569 (680)
Q Consensus 569 ~ 569 (680)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.03 E-value=0.0003 Score=61.81 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 005729 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (680)
Q Consensus 413 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 492 (680)
..+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++.+.|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444443332 2333444444444444444444444444444332 223344444444444444444
Q ss_pred HHHHHHHHHHH
Q 005729 493 RAEELFEEMQE 503 (680)
Q Consensus 493 ~A~~~~~~m~~ 503 (680)
+|...|+...+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00074 Score=59.27 Aligned_cols=93 Identities=9% Similarity=-0.138 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445555555555555555555443 2244555555555555555555555555555432 234445555555555555
Q ss_pred CHHHHHHHHHHHHHC
Q 005729 420 EWQRTFQVLKEMKSS 434 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~ 434 (680)
+.++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0084 Score=55.57 Aligned_cols=187 Identities=13% Similarity=0.123 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 279 GDASKAMRFLGMAQG---VG-LSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (680)
Q Consensus 279 g~~~~A~~~~~~~~~---~g-~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (680)
.+.++.++++..+.. .| ..++.. .|..++-+....|+.+.|..+++.+.+. ++-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666655542 22 334433 3445555666677777777777776654 22222222222223445577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (680)
Q Consensus 354 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 433 (680)
|.++++.+.+.+ +.|..++---+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777665 345666666566666666666777666666554 345777777777777777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHC
Q 005729 434 SGVEPDTHFYNVMIDTFGKYN---CLHHAMAAFDRMLSE 469 (680)
Q Consensus 434 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 469 (680)
.. +.+...+..+.+.+.-.| +++.+.+.|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 43 334444455555443333 445556666666553
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.3e-05 Score=50.54 Aligned_cols=33 Identities=42% Similarity=0.724 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHC 226 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 226 (680)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=0.00045 Score=60.06 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
.....+...+...|++++|...|+.+...+ +.+...|..+...|.+.|++++|..++++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666655543 2355556666666666666666666666665554 44455555566666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005729 521 GEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (680)
...|++++|...++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666653
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.0046 Score=62.74 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=88.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 005729 344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN-SFIYSRILAGYRDRGEWQ 422 (680)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~ 422 (680)
.+...|++++|+..++.+...- +-|+..+....+.+.+.++.++|.+.++++.... |+ ......+..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 3445566777777777766542 2345555556667777777777777777776553 33 445555666777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 423 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
+|..+++...... +.|+..|..|..+|...|+..++.....+ +|...|++++|...+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 7777777665543 56667777777777777776665544433 3444677777777766666
Q ss_pred HC
Q 005729 503 ER 504 (680)
Q Consensus 503 ~~ 504 (680)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 54
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.012 Score=54.48 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005729 350 YLKDAEFVVSEMER---SG-VLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRT 424 (680)
Q Consensus 350 ~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 424 (680)
+.++..+++.+++. .| ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 45555555555542 22 233332 23444455556677777777777766553 22222222222233456777788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 425 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
.++++.+.+.+ +.|.+++..-+...-..|+--+|++-+....+. +..|...|..+...|...|++++|.-++++++-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888777665 566677766666666666666777777666654 3568888888888888888888888888888766
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 005729 505 GYFPCTTTYNIMINLLGEQE---RWEDVKRLLGNMRAQ 539 (680)
Q Consensus 505 ~~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~ 539 (680)
. |-+..-+..+...+.-.| +.+-+.+.+.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4 445555556666554433 456677888888775
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.6e-05 Score=49.45 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (680)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888776
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=4.2e-05 Score=48.11 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 624 (680)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888776
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.78 E-value=0.0013 Score=57.08 Aligned_cols=95 Identities=8% Similarity=0.153 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 487 (680)
...+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344444555555555555555554433 3344555555555555555555555555555443 2344555555556666
Q ss_pred cCChhHHHHHHHHHHHC
Q 005729 488 CGRYDRAEELFEEMQER 504 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~ 504 (680)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.1e-05 Score=47.54 Aligned_cols=31 Identities=39% Similarity=0.696 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQDGY 224 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 224 (680)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.65 E-value=0.002 Score=65.93 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA 389 (680)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 389 (680)
+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++++..+.. +.+..........|.+.++.+.|
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 333444444444444444432 222 1223333434444444444444444321 11333333333334444444444
Q ss_pred HHHHHHHH
Q 005729 390 RIVLKEME 397 (680)
Q Consensus 390 ~~~~~~m~ 397 (680)
+++.+++.
T Consensus 254 L~iAk~av 261 (395)
T PF09295_consen 254 LEIAKKAV 261 (395)
T ss_pred HHHHHHHH
Confidence 44444443
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0031 Score=55.56 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCH
Q 005729 278 AGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT--KAYNALLKGYVKMGYL 351 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li~~~~~~g~~ 351 (680)
.++...+.+.++.+.+.. |+. ...-.+...+...|++++|...|+........++. ...-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555554432 221 12222334555555555555555555554311111 1223344445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLK 394 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (680)
++|...++..... ......+....+.|.+.|++++|...|+
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555443222 1223344444555555555555555554
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0035 Score=55.22 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=9.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 005729 378 DAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~ 398 (680)
..+...|++++|...|+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 334444444444444444443
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.0025 Score=65.13 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005729 375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN 454 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 454 (680)
.|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555555555555443 22 22234444444445555555555544332 223333333344444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005729 455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 455 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (680)
+.+.|..+.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 4455555444444432 112234444444555555555444444443
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.011 Score=58.50 Aligned_cols=297 Identities=14% Similarity=0.049 Sum_probs=165.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (680)
....+.+..++.+|+..+...++.... +..-|..-...|...|++++|.--.++-.+... -........-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 345566667777777777777766433 455555556666666777766655544433211 111233333444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHHcCChhHHHHHH
Q 005729 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDTITWNTL-IDCHFKCGRYDRAEELF 498 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 498 (680)
..+|.+.++. ...| ....++..++.+..... +|.-.+|..+ ..++.-.|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444441 0001 11122222222222111 2333444433 34556678888888777
Q ss_pred HHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHHHhcCChHH
Q 005729 499 EEMQERGYFPCTTTYNIMINL--LGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV-------------DIYGQSGRFDD 563 (680)
Q Consensus 499 ~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-------------~~~~~~g~~~~ 563 (680)
...++.+ . ...+..++++ +...++.+.+...|.+.+.. .|+...-...- +-..+.|++..
T Consensus 193 ~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 7766654 2 2233334443 34567778888888877764 34443322222 22345566666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc
Q 005729 564 AIECLEGLSDQAVNAFRVMRTD---GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRV 639 (680)
Q Consensus 564 A~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 639 (680)
|.+.| .+.... +.+|+...|.....+..+.|+..+|+.--++..+ +.+.. ..|..-..++.-.
T Consensus 268 A~E~Y-----------teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 268 AYECY-----------TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HHHHH-----------HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 55554 343331 3445556788888888899999999999888876 33321 1233333456677
Q ss_pred CCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhhc
Q 005729 640 DKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMKQTLK 679 (680)
Q Consensus 640 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~~~~ 679 (680)
++|++|.+.+++..+. .-+....+.+++|-.-+|++.+
T Consensus 335 e~~e~AV~d~~~a~q~--~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL--EKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHhh--ccccchHHHHHHHHHHHHHhhh
Confidence 8999999999999875 4445666777777776666654
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0015 Score=52.46 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQDGY-HCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~ 273 (680)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.+|.+.++..--..++
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i------------------------- 81 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI------------------------- 81 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH-------------------------
Confidence 455678888888999999999999999999 999999999998887654321111
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005729 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS 311 (680)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 311 (680)
.+++-+.+.+|+.|+..+++|+..+|+.++..+.
T Consensus 82 ----e~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 82 ----ENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred ----HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 1122334555566666666666666666665554
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0015 Score=52.51 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=40.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 306 VITALSNSGRTIEAEAVFEELKESGL-KPRTKAYNALLKGYVKMG--------YLKDAEFVVSEMERSGVLPDEHTYSLL 376 (680)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 376 (680)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666666 566666666665555432 122344555555555555555555555
Q ss_pred HHHHH
Q 005729 377 IDAYA 381 (680)
Q Consensus 377 i~~~~ 381 (680)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0019 Score=66.38 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 401 AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS--GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW 478 (680)
Q Consensus 401 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 478 (680)
.+.+...+..++..+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555555555555555566666655555543 11112233346666666666666666666655556666666666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 523 (680)
|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666655555455555555444444443
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.48 E-value=0.00013 Score=44.69 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGL 622 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 622 (680)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0022 Score=65.91 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=106.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 364 SGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH--AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH 441 (680)
Q Consensus 364 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 441 (680)
.+.+.+......+++.+....+++++..++.+.+... ...-..|..++++.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445577788888888888889999999999988652 22334456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 488 (680)
++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998877667778887777777766
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0035 Score=49.79 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=39.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
...+...|++++|...+..+.+.. +.+...+..+...+...|++++|.++|+...... +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333444444444444444444332 1122334444444444455555555555444432 22233444444444455555
Q ss_pred HHHHHHHHHHH
Q 005729 527 EDVKRLLGNMR 537 (680)
Q Consensus 527 ~~A~~~~~~m~ 537 (680)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0089 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 005729 376 LIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~ 397 (680)
+...+.+.|++++|...|+.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3444444444444444444443
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0044 Score=56.40 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 298 PKTATYAAVITALSN-----SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 298 p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
.+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 455566666665554 35566666667777777777777777777766543
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0061 Score=55.50 Aligned_cols=95 Identities=19% Similarity=0.368 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-------hhHHH
Q 005729 507 FPCTTTYNIMINLLGE-----QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------GLSDQ 574 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~ 574 (680)
..+..+|..+++.+.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+ ...+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHH
Confidence 3456677777776653 46777788888888888888888888888888765 4332 111121 33345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 575 AVNAFRVMRTDGLKPSNLALNSLINAFGE 603 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 603 (680)
|++++++|...|+-||..++..+++.+++
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 66666677777777777777777666633
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.31 E-value=0.0045 Score=49.16 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR 490 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 490 (680)
+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555544432 2223444445555555555555555555555443 2233455555556666666
Q ss_pred hhHHHHHHHHHHH
Q 005729 491 YDRAEELFEEMQE 503 (680)
Q Consensus 491 ~~~A~~~~~~m~~ 503 (680)
+++|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655543
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.35 Score=51.44 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHH
Q 005729 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP----RTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A 354 (680)
|++++|.++|-.|-.++ ..|..+.+.|++-...++++. .|-.. -...|+.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777665554322 234455556666544444432 11111 123456666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 434 (680)
.+.+..-.. . ...+.+|.+..++++-+.+...+ +.+....-.+..++...|.-++|.+.|-+.-
T Consensus 816 ~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-- 879 (1189)
T KOG2041|consen 816 AKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-- 879 (1189)
T ss_pred HHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc--
Confidence 665544321 1 12344444444444444333332 2344445555566666666666655543321
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHHcCChhHHHHHHHH
Q 005729 435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW--------------NTLIDCHFKCGRYDRAEELFEE 500 (680)
Q Consensus 435 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~ 500 (680)
.|. ..+..|...++|.+|.++-++.. -|.+.+. -.-|..+.+.|++-.|.+++.+
T Consensus 880 --~pk-----aAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 880 --LPK-----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred --CcH-----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 121 23344555555555555444322 1222111 1124445566666666666666
Q ss_pred HHH
Q 005729 501 MQE 503 (680)
Q Consensus 501 m~~ 503 (680)
|.+
T Consensus 949 mae 951 (1189)
T KOG2041|consen 949 MAE 951 (1189)
T ss_pred HhH
Confidence 653
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.27 E-value=0.011 Score=49.68 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
+..+..++.+.|+.++|...++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.073 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQ 221 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (680)
.|......|-..|++++|.+.|.+...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 577777778888888888888877654
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0089 Score=59.07 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH 485 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 485 (680)
+|..++....+.+..+.|..+|.+.++.+ ..+..+|......- ...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 55666666666666777777777766433 22334444444442 2245555577777776654 244666677777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 486 FKCGRYDRAEELFEEMQERGYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
.+.|+.+.|..+|++.... +.++ ...|...++-=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777655 2222 236777777767777777777777777663
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0053 Score=58.50 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 005729 485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~ 563 (680)
+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|.+-.+..+.. .| ....|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 334455555555555555443 334444444445555555555555544444442 22 23345555555555555554
Q ss_pred HHHH
Q 005729 564 AIEC 567 (680)
Q Consensus 564 A~~~ 567 (680)
|++.
T Consensus 168 A~~a 171 (304)
T KOG0553|consen 168 AIEA 171 (304)
T ss_pred HHHH
Confidence 4444
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.017 Score=52.35 Aligned_cols=105 Identities=10% Similarity=-0.023 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
...|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|...+.+..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556777777778888888888888887553222 23467778888888888888888888887652 22345556666
Q ss_pred HHHH-------hcCChHHHHHHHhhhHHHHHHHHHHHHH
Q 005729 553 DIYG-------QSGRFDDAIECLEGLSDQAVNAFRVMRT 584 (680)
Q Consensus 553 ~~~~-------~~g~~~~A~~~~~~~~~~a~~~~~~m~~ 584 (680)
..+. +.|++++|...++ +|...|++...
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~----~a~~~~~~a~~ 148 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD----QAAEYWKQAIA 148 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH----HHHHHHHHHHH
Confidence 6666 6677777665443 55555665554
No 165
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.14 E-value=0.37 Score=48.88 Aligned_cols=372 Identities=14% Similarity=0.156 Sum_probs=202.1
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCC------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHH
Q 005729 276 AKAGDASKAMRFLGMAQGV--GLS------------PKTATYAAVITALSNSGRTIEAEAVFEELKESGL----KPRTKA 337 (680)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~--g~~------------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~ 337 (680)
.+.+.+++|++.+..-... +-. +|..-=+..++++...|++.++..+++++...=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4667788888777655433 211 1122224567788888999888888888765433 367888
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005729 338 YNALLKGYVKMGY---------------LKDAEFVVSEMERS------GVLPDEHTYSLLIDAYANA--GRWESARIVLK 394 (680)
Q Consensus 338 ~~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 394 (680)
||.++-++.++=- ++.+.-..++|... .+.|.......++....-. .+..--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 8886666654311 12222222222211 1223333333333322211 22223344444
Q ss_pred HHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 005729 395 EMEVSHAKPNSFI-YSRILAGYRDRGEWQRTFQVLKEMKSSGV----EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (680)
Q Consensus 395 ~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (680)
.....-+.|+... ...+...+.+ +.+++..+.+.+....+ ..-..++..++....+.++...|.+.+..+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 4444445555432 2333333333 44555555444433211 112456777788888888888888888877654
Q ss_pred CCCCCHHHH-------HHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHH
Q 005729 470 GIEPDTITW-------NTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMIN---LLGEQER-WEDVKRLLG 534 (680)
Q Consensus 470 ~~~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~---~~~~~g~-~~~A~~~~~ 534 (680)
. |+...- ..+-+..|. .-+..+-+.+|+.....++.- ......++. -+-+.|. -++|..+++
T Consensus 328 d--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 328 D--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred C--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 2 333211 122222321 112334455566665554221 222233333 2344555 788999998
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCH
Q 005729 535 NMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL----ALNSLINA--FGEDQRD 607 (680)
Q Consensus 535 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~--~~~~g~~ 607 (680)
.+.+ +.+ |..+-+.+. -+.|. .+..|+.. ....+-+.+-+-+.+.|+.|-.+ .-|.|.++ +..+|++
T Consensus 405 ~il~--ft~yD~ec~n~v~-~fvKq-~Y~qaLs~--~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 405 LILQ--FTNYDIECENIVF-LFVKQ-AYKQALSM--HAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHH--hccccHHHHHHHH-HHHHH-HHHHHHhh--hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 8887 344 333333322 22221 12222221 22223333334445567776543 44555554 4578999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHH
Q 005729 608 AEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARA 665 (680)
Q Consensus 608 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 665 (680)
.++.-+-.-..+ +.|++.+|..+.-.+....++.+|..++.++ .|+..++.
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 999987777777 8999999999999999999999999999885 66666655
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.017 Score=57.14 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=45.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK-CGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
+|..++...-+.+.++.|+.+|.+..+.+ ..+...|-.....-.+ .++.+.|..+|+...+. ++.+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666555332 1122223222222122 33444456666555544 234445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005729 521 GEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (680)
.+.|+.+.|..+|++.+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS 99 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.11 E-value=0.025 Score=49.19 Aligned_cols=89 Identities=11% Similarity=0.049 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS 558 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 558 (680)
-.+..-+...|++++|..+|+-+...+ +-+..-|..|..++-..|++++|...+.......+ -|+..+-.+..++.+.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 344445567788888888887777665 45566666777777777888888888887777543 3667777777778888
Q ss_pred CChHHHHHHHh
Q 005729 559 GRFDDAIECLE 569 (680)
Q Consensus 559 g~~~~A~~~~~ 569 (680)
|+.+.|.+.|+
T Consensus 117 G~~~~A~~aF~ 127 (157)
T PRK15363 117 DNVCYAIKALK 127 (157)
T ss_pred CCHHHHHHHHH
Confidence 88777777665
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.033 Score=50.62 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (680)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 341 (680)
....+..+...|...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677777788888999999998888876432222 3567778888888888888888888887753 2345666667
Q ss_pred HHHHHHcCCHHHHH
Q 005729 342 LKGYVKMGYLKDAE 355 (680)
Q Consensus 342 i~~~~~~g~~~~A~ 355 (680)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654433
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.09 E-value=0.032 Score=50.68 Aligned_cols=90 Identities=12% Similarity=0.050 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC--TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
...+..+...+...|++++|..+|++..+....+. ...+..+...+.+.|++++|...+.+..+... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 44566677777778888888888888775432221 35677777888888888888888888887532 2456666777
Q ss_pred HHHHhcCChHHHH
Q 005729 553 DIYGQSGRFDDAI 565 (680)
Q Consensus 553 ~~~~~~g~~~~A~ 565 (680)
..|...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777777655443
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.15 Score=50.87 Aligned_cols=276 Identities=13% Similarity=0.008 Sum_probs=163.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005729 305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG 384 (680)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 384 (680)
-....+.+..++.+|+..+...++.+. .+..-|..=...+...|+++++.--.+.-.+... -....+.-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhH
Confidence 456788899999999999999998753 3566677777778888888888766655554321 12334444555666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH-HHHHHccCCHHHHHHH
Q 005729 385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG-VEPDTHFYNVM-IDTFGKYNCLHHAMAA 462 (680)
Q Consensus 385 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~l-i~~~~~~g~~~~A~~~ 462 (680)
+..+|.+.++.-. .+ ....++..++...... -+|...++..+ ..++.-.|+.+.|.++
T Consensus 132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 6666666665111 11 1111222222222211 12333344333 2344566777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCCHH
Q 005729 463 FDRMLSEGIEPDTITWNTLIDC--HFKCGRYDRAEELFEEMQERGYFPCTTTYNIM-------------INLLGEQERWE 527 (680)
Q Consensus 463 ~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-------------i~~~~~~g~~~ 527 (680)
-..+++.. ....+...+.+ +.-.++.++|...|++.+..+ |+...-... .+-..+.|++.
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 66666542 12223333333 234566777777777776654 443322211 12335688899
Q ss_pred HHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 005729 528 DVKRLLGNMRAQ---GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGE 603 (680)
Q Consensus 528 ~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~ 603 (680)
.|.+.+.+.+.. +.+|+...|.....+..+.|+.++|+.-.+ +|+. +.+... .|..-..++..
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~----~Al~---------iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN----EALK---------IDSSYIKALLRRANCHLA 333 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh----hhhh---------cCHHHHHHHHHHHHHHHH
Confidence 999999988864 445667778888888888999998886533 2221 222211 34444555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 005729 604 DQRDAEAFAVLQYMKEN 620 (680)
Q Consensus 604 ~g~~~~A~~~~~~m~~~ 620 (680)
.++|++|.+.++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 78899999888888764
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.07 E-value=0.035 Score=59.69 Aligned_cols=71 Identities=18% Similarity=0.082 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005729 544 NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLK 623 (680)
Q Consensus 544 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 623 (680)
+...|.++.-.....|++++|...++ +... +.|+...|..+...+...|+.++|.+.+++... +.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~-----------rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAIN-----------KAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHH-----------HHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 44555555555555566666655543 2222 335556666666666667777777777666665 44
Q ss_pred CCHHHH
Q 005729 624 PDVVTY 629 (680)
Q Consensus 624 p~~~~~ 629 (680)
|...+|
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 544443
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.5 Score=50.34 Aligned_cols=187 Identities=14% Similarity=0.183 Sum_probs=96.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHHcCCH
Q 005729 206 NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELD----GQLLNDVIVGFAKAGDA 281 (680)
Q Consensus 206 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 281 (680)
-|++++|..+|-+|.+.++. +....+.|++ -++++.+...|-..| ...|+.+...+.....+
T Consensus 747 ~g~feeaek~yld~drrDLA---------ielr~klgDw-----frV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA---------IELRKKLGDW-----FRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred hcchhHhhhhhhccchhhhh---------HHHHHhhhhH-----HHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999888776421 2222223322 133333333222222 23566666666666777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM 361 (680)
Q Consensus 282 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 361 (680)
++|.+.|..-.. . ...+.++.+..++++-+.+-+.+ +.+....-.+.+++...|.-++|.+.|-+.
T Consensus 813 e~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 813 EEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 777776654321 1 12445555555555444443333 334455556666777777777766655332
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhcCCHHHHHHH
Q 005729 362 ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI--------------YSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 362 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--------------~~~ll~~~~~~g~~~~A~~l 427 (680)
. .|. ..++.|...++|.+|.++-+...- |...+ ..-.|..+.+.|.+-.|-++
T Consensus 879 s----~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarl 945 (1189)
T KOG2041|consen 879 S----LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARL 945 (1189)
T ss_pred c----CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHH
Confidence 2 111 233445555666666555443321 11111 11234566777776667777
Q ss_pred HHHHHH
Q 005729 428 LKEMKS 433 (680)
Q Consensus 428 ~~~m~~ 433 (680)
+.+|.+
T Consensus 946 l~qmae 951 (1189)
T KOG2041|consen 946 LSQMAE 951 (1189)
T ss_pred HHHHhH
Confidence 776653
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.05 E-value=0.039 Score=59.28 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHH
Q 005729 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARA 665 (680)
Q Consensus 589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 665 (680)
.+...|..+.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++..+. .|...++-
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 3446787777777778999999999999999 5688899999999999999999999999999875 55555543
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.05 E-value=0.018 Score=59.12 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR 490 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 490 (680)
....+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456677788888888888887765 5567777888888888888888888888888764 3456678888888888888
Q ss_pred hhHHHHHHHHHHHCC
Q 005729 491 YDRAEELFEEMQERG 505 (680)
Q Consensus 491 ~~~A~~~~~~m~~~~ 505 (680)
+++|...|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888764
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.04 E-value=0.019 Score=58.95 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 005729 376 LIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC 455 (680)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 455 (680)
....+...|++++|++.|++..+... .+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 45667788999999999999988753 467788889999999999999999999998875 5577889999999999999
Q ss_pred HHHHHHHHHHHHHCC
Q 005729 456 LHHAMAAFDRMLSEG 470 (680)
Q Consensus 456 ~~~A~~~~~~m~~~~ 470 (680)
++.|...|++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.00 E-value=0.018 Score=57.13 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005729 547 TYTTLVDIYGQS-GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMKENGLK 623 (680)
Q Consensus 547 ~~~~li~~~~~~-g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 623 (680)
++..+...|... |++++|++.|+ +|.++|..- | .+. ..++..+...+.+.|++++|+++|++....-+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~----~A~~~y~~e---~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQ----KAAELYEQE---G-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHH----HHHHHHHHT---T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHC---C-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 445556667777 88888888776 454444432 2 111 236778888899999999999999988764222
Q ss_pred -----CCHH-HHHHHHHHHHhcCCcCcHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHH
Q 005729 624 -----PDVV-TYTTLMKALIRVDKFHKVPAVYEEMILS--GCTPDR--KARAMLRSALRY 673 (680)
Q Consensus 624 -----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~pd~--~~~~~l~~a~~~ 673 (680)
.+.. .|...+-.+...|+...|.+.+++.... ++.... .....|++|++.
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 1221 2333444567778899999999988754 333332 344555666653
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.99 E-value=0.0016 Score=51.13 Aligned_cols=20 Identities=40% Similarity=0.865 Sum_probs=8.4
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 005729 481 LIDCHFKCGRYDRAEELFEE 500 (680)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~ 500 (680)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.99 E-value=0.2 Score=48.24 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=37.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
.+..-|.+.|.+..|..-|+.+++. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3445577777777777777777765 223344556666677777777777776665543
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0088 Score=59.09 Aligned_cols=139 Identities=14% Similarity=-0.032 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC
Q 005729 511 TTYNIMINLLGEQERWEDVKRLLGNMRA----QGLL-PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD 585 (680)
Q Consensus 511 ~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~ 585 (680)
..|..|.+.|.-.|+++.|....+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+.-..-|+++=++-.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE- 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE- 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-
Confidence 3455566666667888888776654332 2222 134567778888888888888888887554444443222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 586 GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE----NG-LKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 586 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
..+.-+|.+.|.-..+++.|+.++.+-.. .+ ..-....+.+|..+|...|..++|..+.+.-++.
T Consensus 275 -----AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 275 -----AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred -----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22444677777777788888887765432 11 1224567788888888888888888877766544
No 180
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.038 Score=48.65 Aligned_cols=75 Identities=33% Similarity=0.402 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHH-----HcCCCCCHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMI-----LSGCTPDRKARAM 666 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~~~~ 666 (680)
+...++..+...|++++|..+.+.+.. +.| |...|..+|.+|.+.|+..+|.+.|+++. +.|+.|...+...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 466777888899999999999999998 445 77899999999999999999999999886 4599999998766
Q ss_pred HHH
Q 005729 667 LRS 669 (680)
Q Consensus 667 l~~ 669 (680)
...
T Consensus 142 ~~~ 144 (146)
T PF03704_consen 142 YRE 144 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.018 Score=52.10 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP--DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 518 (680)
..+..+...+...|++++|...|.........+ ...+|..+...|...|++++|+..+++..... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344444455555566666666666555432111 12355566666666666666666666665542 223344444444
Q ss_pred HHH-------hcCCHHHHHHHHHH
Q 005729 519 LLG-------EQERWEDVKRLLGN 535 (680)
Q Consensus 519 ~~~-------~~g~~~~A~~~~~~ 535 (680)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 56666655444443
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.0021 Score=50.47 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=9.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 005729 376 LIDAYANAGRWESARIVLKE 395 (680)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~ 395 (680)
+..+|.+.|++++|+.++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444443
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.91 E-value=0.25 Score=43.84 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCC
Q 005729 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG 586 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g 586 (680)
.|++..-..|..++.+.|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+ ..-.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e--------~~pa~ 157 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME--------YNPAF 157 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh--------cCCcc
Confidence 5666666677777888888888888888777654455777777788888888877777766542211 00113
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 587 LKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 587 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
-.||. ...+...|...|++.+|...|+.... ..|+...-......+.++|+.+++..-+.++.
T Consensus 158 r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 158 RSPDG--HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCCCc--hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34443 34566777778888888888888887 46666555555566777777777665555444
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.89 E-value=0.068 Score=46.55 Aligned_cols=96 Identities=7% Similarity=-0.082 Sum_probs=62.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 521 (680)
..-.+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|......+ +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33344455566677777777777666554 2345556666666677777777777777776665 456666666777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 005729 522 EQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~ 539 (680)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766553
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.88 E-value=0.03 Score=55.51 Aligned_cols=135 Identities=16% Similarity=-0.001 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQ----ERGY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRA----QGL-LPNVVT 547 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~~ 547 (680)
|..|.+.|.-.|+++.|+..-+.-+ +-|- ......+..+.+++.-.|+++.|.+.++.... .|- ......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444445555555554433211 1110 11123445555555566666666655554322 111 112344
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
..+|.+.|.-..++.+|+.++...+.-|.++-+.. -....+.+|..+|...|..+.|+.+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri------Ge~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI------GELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666666666553333222221111 122355566666666666666665555443
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.75 E-value=0.34 Score=46.64 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005729 515 IMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (680)
Q Consensus 515 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (680)
.+.+-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4566788999999999999999986 33345667788899999999999987754
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.022 Score=54.40 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=44.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531 (680)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 531 (680)
+.+++++|+..|.+.++.. +.|.+.|..-..+|++.|.++.|++=.+..+..+ +-...+|..|..+|...|++++|.+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444555555555544432 2344444444555555555555555544444433 2233445555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHH
Q 005729 532 LLGNMRAQGLLPNVVTY 548 (680)
Q Consensus 532 ~~~~m~~~~~~p~~~~~ 548 (680)
.|++.++ +.|+-.+|
T Consensus 171 aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESY 185 (304)
T ss_pred HHHhhhc--cCCCcHHH
Confidence 5555544 34444433
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.66 E-value=0.85 Score=45.73 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (680)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 522 (680)
.+.-|.-+...|+...|.++-.+.. .|+..-|...+.+|+..++|++-..+... + -+++-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444556667788888877766654 57888888889999999998877765432 1 234778888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 523 QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 523 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
.|+..+|..++.++ . +..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 99988888887762 1 24567788889998888765
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.17 Score=53.29 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
+...+...+-+...+.-|-++|..|-. ...+++.....+++++|..+-+...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 333444444445555566666665532 12344555566666666666655443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.65 E-value=0.21 Score=52.57 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCC
Q 005729 298 PKTATYAAVITALSNSGRTIEAEAVF---------EELKESGLKPRTKAYNALLKGYVKMGYLK--DAEFVVSEMERSGV 366 (680)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~A~~l~---------~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~ 366 (680)
+-.+.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=++|.+..+.. +...-++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444555566677777777765542 111111 012223444455566555433 34444566677776
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005729 367 LPDEHTYSLLIDAYANAGRWESARIVLKE 395 (680)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (680)
.|+... +...++-.|++.+|-++|.+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 676554 44556667788887777765
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.65 E-value=0.13 Score=43.10 Aligned_cols=88 Identities=25% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYV 346 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~ 346 (680)
.++-..|+.++|+.+|++....|+... ...+..+...+...|++++|+.++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344556777777777777666665433 2344555566666666666666666665431 22 112222233445
Q ss_pred HcCCHHHHHHHHHHHH
Q 005729 347 KMGYLKDAEFVVSEME 362 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~ 362 (680)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666554443
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.58 E-value=0.0067 Score=45.18 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 602 GEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAML 667 (680)
Q Consensus 602 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 667 (680)
.+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45788999999999988742 337778888999999999999999999998875 6775554444
No 193
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.61 Score=47.25 Aligned_cols=191 Identities=16% Similarity=0.108 Sum_probs=96.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQERG---YFPCTTTYNIMINLLGE---QERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 553 (680)
.++-+|....+++.-+++++.|.... +.-....-....-++.+ .|+.++|.+++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666666666666666665431 11111111222334444 6667777777766554444556666666665
Q ss_pred HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC-CHHHHHHHH----HHHHHCCCC--
Q 005729 554 IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL---ALNSLINAFGEDQ-RDAEAFAVL----QYMKENGLK-- 623 (680)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g-~~~~A~~~~----~~m~~~g~~-- 623 (680)
.|-.. +.++...=....++|...|.+--+ +.|+.. -+.+|+....... .-.+..++- ....+.|..
T Consensus 226 IyKD~--~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 226 IYKDL--FLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHH--HHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 55322 111000000124455555555444 334443 2233333332211 111222222 122233322
Q ss_pred -CCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Q 005729 624 -PDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMKQ 676 (680)
Q Consensus 624 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~ 676 (680)
.|..-+.+++.+..-.|++++|.+.+++|.+. .|.........+-++.+++
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W~l~St~~ni~Li~~ 353 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAWELESTLENIKLIRH 353 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcchhHHHHHHHHHHHHH
Confidence 34455667888999999999999999999976 4555555555555555544
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=1.7 Score=47.19 Aligned_cols=334 Identities=13% Similarity=0.072 Sum_probs=183.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005729 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI-DSSLLQKLYKEIECDKIELDGQLLNDVIVGF 275 (680)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~ 275 (680)
..+|.-++..+.+..|+++-..|...-.. ....|.....-..+..+. +...++.+-+++.. . .....+|..+..-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~-~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-K-LTPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-c-CCCceeHHHHHHHH
Confidence 34688888999999999998887643111 144555555555554333 33333333333322 1 24556778888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005729 276 AKAGDASKAMRFLGMAQGVGLS----PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (680)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 351 (680)
..+|+.+-|..+++.=...+.+ .+..-+...+.-+.+.|+.+-...++-.|... .+...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence 8899999999988753322211 11122344455556666666666666555542 1222222111 233
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H-HH-CCCCCCHHHHHHHHHHHHhcCCH-------
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKE-M-EV-SHAKPNSFIYSRILAGYRDRGEW------- 421 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~-~~~~~~~~~~~~ll~~~~~~g~~------- 421 (680)
-.|..+|.+..+.. |..+ +-+.|- .++-.++...|.. - .. .-+.+-..........+.+....
T Consensus 589 p~a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 44555555554421 1111 112222 2222222221110 0 00 00111111222233334333321
Q ss_pred ---HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005729 422 ---QRTFQVLKEMKS-SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEEL 497 (680)
Q Consensus 422 ---~~A~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 497 (680)
.+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 111222222221 2222233334444555667788888888877765 57888888889999999999887776
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005729 498 FEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (680)
Q Consensus 498 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (680)
-+.+. .+.-|.-++.+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.+.-
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 65543 1455777889999999999999988876431 1 5678899999999998864
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.39 Score=45.04 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHH
Q 005729 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS-----LLI 377 (680)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-----~li 377 (680)
.+.++.++.-.|.+.-...++.+.++...+.+......|++.-.+.|+.+.|...|++.++..-..|..+.+ ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 444555555556666666666666665545555566666666666666666666666555432222222222 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 434 (680)
..|.-.+++..|...++++...+ +.+....|.-.-+..-.|+...|++.++.|++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555555555555555443 223333333333334445555555555555544
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.47 E-value=1.1 Score=44.88 Aligned_cols=109 Identities=16% Similarity=0.242 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 372 TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG 451 (680)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 451 (680)
+.+.-+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++-.. .-.+.-|.-.+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444556667777777777766553 46777788888888888888776665432 123356777778888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005729 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (680)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (680)
+.|...+|..+..++ .+..-+..|.++|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888887777662 124556777888888888766443
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.45 E-value=0.0093 Score=43.94 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCC
Q 005729 597 LINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 597 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 660 (680)
+...+.+.|++++|+..|++.++.. +-+...+..+..++.+.|++++|..+++++++. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 4567888999999999999999853 226678889999999999999999999999874 554
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.43 E-value=0.19 Score=42.02 Aligned_cols=87 Identities=20% Similarity=0.131 Sum_probs=52.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 005729 482 IDCHFKCGRYDRAEELFEEMQERGYFPC--TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL--PNVVTYTTLVDIYGQ 557 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~ 557 (680)
..++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++....... -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4455567777777777777777664433 234555666677777777777777777664211 022222333446667
Q ss_pred cCChHHHHHHH
Q 005729 558 SGRFDDAIECL 568 (680)
Q Consensus 558 ~g~~~~A~~~~ 568 (680)
.|+.++|++.+
T Consensus 88 ~gr~~eAl~~~ 98 (120)
T PF12688_consen 88 LGRPKEALEWL 98 (120)
T ss_pred CCCHHHHHHHH
Confidence 77777776654
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.42 E-value=0.011 Score=44.25 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CcCcHHHHHHHHHHc
Q 005729 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVD-KFHKVPAVYEEMILS 655 (680)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 655 (680)
+..+|..+...+...|++++|+..|++.++. .| +...|..+..++.+.| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3467889999999999999999999999984 45 5678889999999999 799999999998864
No 200
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.40 E-value=0.35 Score=40.30 Aligned_cols=147 Identities=14% Similarity=0.201 Sum_probs=86.4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (680)
-.|..++..++..+..... +..-||.+|--....-+-+-..+.++.+-+. + | ...+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F--D----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI-F--D----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-------------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------chhhcchHHHHH
Confidence 3567777777777776643 4555666665555555545555555544332 1 1 123344443333
Q ss_pred HHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHH
Q 005729 567 CLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVP 646 (680)
Q Consensus 567 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 646 (680)
.+- . ...+....+..++.+...|+.+.-.++++.+.+. -.+++.....+..||.+.|+..++.
T Consensus 78 C~~-------------~---~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 78 CYA-------------K---RNKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp HHH-------------H---TT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHH-------------H---hcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHH
Confidence 321 0 1123445666778888999999999999988763 3788899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Q 005729 647 AVYEEMILSGCTPDRKARAMLRSALRYMKQ 676 (680)
Q Consensus 647 ~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~ 676 (680)
+++++.-++|+ .+||+.+++
T Consensus 141 ell~~ACekG~----------kEAC~nIn~ 160 (161)
T PF09205_consen 141 ELLKEACEKGL----------KEACRNINQ 160 (161)
T ss_dssp HHHHHHHHTT-----------HHHHHHHHT
T ss_pred HHHHHHHHhch----------HHHHHHhcc
Confidence 99999998874 456666554
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.38 E-value=0.017 Score=43.13 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 005729 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE-RWEDVKRLLGNMRA 538 (680)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~ 538 (680)
...|..+...+.+.|++++|+..|++.++.+ +-+...|..+..++.+.| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555555556666666666666655554 334555555555555555 45666655555544
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.34 E-value=0.014 Score=43.49 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=27.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|..++.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555543 33455555555555555555555555555554
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.019 Score=43.40 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=56.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 598 INAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRS 669 (680)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 669 (680)
-..|.+.+++++|+++++++.+.+ +.+...|......+.+.|++.+|.+.+++.++. .|+......+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHHHH
Confidence 356888999999999999999842 336678888999999999999999999999985 677766655543
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.31 E-value=0.73 Score=40.98 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHH
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG---YFPCTTTY 513 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~ 513 (680)
.|++.--..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 577777777888888888888888888887765455677777777888888888888888888887652 2233 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 514 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
..+.+.+...|+..+|+..|+..... -|+...-......+.+.|+.+++..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 55677888889988899988888874 4555555555667788888887765443
No 205
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.27 E-value=0.019 Score=42.21 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=29.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
..+.+.|++++|...|+++++.. +-+...+..+..++...|++++|...++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555553 33444555555555555555555555555554
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.26 Score=47.55 Aligned_cols=47 Identities=11% Similarity=-0.081 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 554 (680)
+-|...|..|...|...|++..|..-|.+..+.. .++...+..+..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aea 199 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEA 199 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445555555555555555555555555555531 1234444444443
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=1.3 Score=41.78 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 336 KAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
.+.+.++..+.-.|.+.-....+.+.++...+.++.....|.+.-.+.||.+.|...|+...+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444555555566666666666777766655556666667777777777777777777766543
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.08 E-value=1 Score=42.07 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=34.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLS--PKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (680)
..+...|++.+|.+.|+.+...... --....-.++.++.+.|++++|...+++.++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788888888777654211 11234556667777777777777777776654
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.02 E-value=0.13 Score=50.00 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN----LALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (680)
..|...+..+.+.|++++|+..|+ .+... .|+. ..+-.+..+|...|++++|...|+.+.+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~-----------~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~- 209 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQ-----------NFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN- 209 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-----------HHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence 345555555566788888776654 44432 2433 46677889999999999999999999863
Q ss_pred CCCC----HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHH
Q 005729 622 LKPD----VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKAR 664 (680)
Q Consensus 622 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 664 (680)
.|+ ...+..+...+...|+.++|.++|+++++. .|+....
T Consensus 210 -yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~~a 253 (263)
T PRK10803 210 -YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTDGA 253 (263)
T ss_pred -CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHH
Confidence 233 456666778888999999999999999985 5665543
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.98 E-value=2.2 Score=43.41 Aligned_cols=128 Identities=12% Similarity=0.067 Sum_probs=67.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE---------QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS 558 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 558 (680)
.|+.++|++++..+......++..+|..+.+.|-. ....++|...|.+.-+. .|+...--.++-.+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 55566666666554444345555555555554421 11256677777766553 34444333333333334
Q ss_pred CChHHHHHHHhhhHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 559 GRFDDAIECLEGLSDQAVNAFRVMRTDGLK---PSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (680)
Q Consensus 559 g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (680)
|...+...-++.. +..+-....+.|.. .+---+.+++.++.-.|+.++|.+..++|...
T Consensus 273 g~~~~~~~el~~i---~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKI---GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHH---HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4322222111111 11111112223322 33335678899999999999999999999974
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.98 E-value=0.023 Score=43.70 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
..+++.+...|...|++++|++.++ +++++.+.+.. -.|+ ..++..+..+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~----~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYE----KALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH----HHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578888999999999999998876 44444322211 1233 35889999999999999999999998764
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.42 Score=46.17 Aligned_cols=101 Identities=9% Similarity=0.047 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHH
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG---RYDRAEELFEEMQERGYFPCTTTY 513 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~ 513 (680)
+-|...|-.|...|...|+.+.|...|....+.. .++...+..+..++.... ...++..+|+++...+ +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 5677788888888888888888888888777653 345555555555544322 3567778888888776 5667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 514 NIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 514 ~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777788888888888888888876
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.93 E-value=0.76 Score=42.96 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005729 516 MINLLGEQERWEDVKRLLGNMRAQGL--LPNVVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 516 li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A 564 (680)
+..-|.+.|.+..|..-++.+++.=. .-.......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 44556677777777777777766511 11123445566677777766533
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.64 E-value=0.26 Score=47.91 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 005729 384 GRWESARIVLKEME 397 (680)
Q Consensus 384 g~~~~A~~~~~~m~ 397 (680)
|++++|+..|+.+.
T Consensus 157 ~~y~~Ai~af~~fl 170 (263)
T PRK10803 157 SRQDDAIVAFQNFV 170 (263)
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444444333
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.58 E-value=0.088 Score=46.27 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVT 547 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 547 (680)
....++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666667777777777777777665 55677777777777777777777777766542 366666554
No 216
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=4.8 Score=44.07 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=67.5
Q ss_pred HHHhcccCCHHHHHHh---hCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 005729 170 IHALGRSEKLYEAFLL---SQRQRL---TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK 243 (680)
Q Consensus 170 i~~~~~~g~~~~A~~~---~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 243 (680)
|+-+.+.+++++|+.. ..+..+ -...+-..|..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 4555666788888877 223333 3457899999999999999999999998864 45556555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 005729 244 IDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277 (680)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~ 277 (680)
. ..++..+.......+..+|..++..+..
T Consensus 439 l-----~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 L-----TDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c-----chhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4 2444555554444667788888877766
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=95.44 E-value=0.84 Score=40.12 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=59.0
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005729 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (680)
-+...|++++|..+|+-+...+ +-+..-|..|...+-..+++++|...+......+. -|+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456788888888888777665 34555566677777777888888888877765432 244555566777888888888
Q ss_pred HHHHHh
Q 005729 564 AIECLE 569 (680)
Q Consensus 564 A~~~~~ 569 (680)
|...|+
T Consensus 124 A~~~f~ 129 (165)
T PRK15331 124 ARQCFE 129 (165)
T ss_pred HHHHHH
Confidence 877765
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.38 E-value=0.12 Score=39.01 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555543 33444455555555555555555555555554
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.35 E-value=0.042 Score=42.18 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKEN--GLK---PD-VVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
.+|+.+..+|...|++++|+.++++..+. .+. |+ ..++..+...+...|++++|.+++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 37899999999999999999999998842 122 22 45788899999999999999999999865
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.20 E-value=4.3 Score=41.55 Aligned_cols=442 Identities=16% Similarity=0.126 Sum_probs=219.0
Q ss_pred CCChHHHHHHHHHHHHCCCCC----chHHHHHHHHHHhcccCCHHH--HHHh--hCCCCCCHHHHHHHHH--HHHHcCCH
Q 005729 140 NSSIDLAYAVVSWLQKHNLCY----SYELLYSILIHALGRSEKLYE--AFLL--SQRQRLTPLTYNALIS--ACARNDDL 209 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~--A~~~--~~~~~~~~~~~~~li~--~~~~~g~~ 209 (680)
.++..++..+|.++-+.--.. ......+.++++|.-.+ ++. .... .+..+.. .|-.+.. .+.+.|.+
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKEY 95 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhH
Confidence 457778888888876543111 11233456667765432 221 1111 2222222 3444433 34578889
Q ss_pred HHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 210 EKALNLMSKMRQD--GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRF 287 (680)
Q Consensus 210 ~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (680)
.+|++.+..=... +..+. ..+.-+ .+++ +|...-+..++.+...|++.+++.+
T Consensus 96 ~kal~~ls~w~~~~~~~~~~--~Ld~ni--------------~~l~---------~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESP--WLDTNI--------------QQLF---------SDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred HHHHHHHHHHHhhhcccccc--hhhhhH--------------HHHh---------hHHHHHHHHHHHHHhcCCcchHHHH
Confidence 9999887665443 21110 000000 0110 1222224445556666666666666
Q ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHhcC--------C-------hHHHHHHHHHHHHc------CCCCCHHHHHHHH
Q 005729 288 LGMAQGV----GLSPKTATYAAVITALSNSG--------R-------TIEAEAVFEELKES------GLKPRTKAYNALL 342 (680)
Q Consensus 288 ~~~~~~~----g~~p~~~~~~~li~~~~~~g--------~-------~~~A~~l~~~m~~~------g~~p~~~~~~~li 342 (680)
++++... ...-++.+|+.++-.+++.- . ++.+.-...+|... .+.|.......++
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence 6555432 22345566665443333211 0 11111111122111 1234444444444
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHH
Q 005729 343 KGYVKMGY--LKDAEFVVSEMERSGVLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHAK----PNSFIYSRILAGY 415 (680)
Q Consensus 343 ~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ll~~~ 415 (680)
....-... ..--.+++......-+.|+-. +...|+..+.+ +.+++..+.+.+....+. .-..++..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44332211 112223333333333344422 22233333333 555555555444332111 1234677888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 005729 416 RDRGEWQRTFQVLKEMKSSGVEPDTHFYN-------VMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTL--- 481 (680)
Q Consensus 416 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--- 481 (680)
.+.++-.+|.+.+.-+.-. .|+...-. .+-+..+. .-+...=..+|+.+...++...- .-..|
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~ 385 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFG 385 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHH
Confidence 8999999998888877654 34433221 22223331 11233334455555544322111 11222
Q ss_pred HHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 005729 482 IDCHFKCGR-YDRAEELFEEMQERGYFPCTTTYNIMI----NLLGEQ---ERWEDVKRLLGNMRAQGLLPN----VVTYT 549 (680)
Q Consensus 482 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~li----~~~~~~---g~~~~A~~~~~~m~~~~~~p~----~~~~~ 549 (680)
..-+.+.|. -++|+.+++...+-. .-|...-|.+. .+|.+. ..+.+-..+-+-+.+.|+.|- ...-|
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 233555666 789999999887643 33343333322 233332 334444455555556687763 34555
Q ss_pred HHHHH--HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 550 TLVDI--YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV 627 (680)
Q Consensus 550 ~li~~--~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 627 (680)
.|.+| +...|++.++.-.- +--..+.|+..+|..++-++....++++|.+++.. ++|+..
T Consensus 465 ~LaDAEyLysqgey~kc~~ys-------------~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~ 526 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYS-------------SWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNER 526 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHH-------------HHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchh
Confidence 55544 45678888776431 11123789999999999999999999999999875 577877
Q ss_pred HHHHHH
Q 005729 628 TYTTLM 633 (680)
Q Consensus 628 ~~~~l~ 633 (680)
+++.-+
T Consensus 527 ~~dskv 532 (549)
T PF07079_consen 527 MRDSKV 532 (549)
T ss_pred hHHHHH
Confidence 776543
No 221
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.12 E-value=3.9 Score=40.59 Aligned_cols=135 Identities=21% Similarity=0.341 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCChH
Q 005729 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGE--QE----RWEDVKRLLGNMRAQGL---LPNVVTYTTLVDIYGQSGRFD 562 (680)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~ 562 (680)
++...+++.|.+.|+.-+..+|-+....... .. ....+..+++.|.+... .++..++..++.. ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3444566666666666666555543322222 11 24457777777776532 2344555555433 333333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQ-R--DAEAFAVLQYMKENGLKPDVVTYTTLMKA 635 (680)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g-~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 635 (680)
...++....|+.+...|+..+.. -+.+-+-++.... . ...+.++++.+.+.|+++....|..+.-.
T Consensus 157 -------~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 -------ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred -------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 23344556677777766665544 3333333332211 1 34667777777777777776666655543
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.10 E-value=4.1 Score=40.80 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=145.9
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 303 YAAVITALSN--SGRTIEAEAVFEELKESGLKPRTKAYNALLKG--YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID 378 (680)
Q Consensus 303 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 378 (680)
|.+|-.++.. .|+-..|.++-.+..+. +..|..-...|+.+ -.-.|+++.|.+-|+.|.. |+.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 3344444333 34555555554443321 12233333333332 2234666777777776664 2222222122
Q ss_pred H----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHH--HHHHHHH-
Q 005729 379 A----YANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG-VEPDTHFY--NVMIDTF- 450 (680)
Q Consensus 379 ~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~--~~li~~~- 450 (680)
+ --+.|+.+.|.++-+..-..- +--...+...+...|..|+|+.|+++++.-+... +.++..-- ..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2 124566666666555554332 2234456666666777777777777766654432 22332111 1122111
Q ss_pred -H-ccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 451 -G-KYNCLHHAMAAFDRMLSEGIEPDTIT-WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (680)
Q Consensus 451 -~-~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 527 (680)
. -..+...|...-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+..-.|+. +.. ....+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCC--
Confidence 1 112344455444444433 344332 223345677888888888888888776544432 221 12334444
Q ss_pred HHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 005729 528 DVKRLLGNMRAQ-GLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE-D 604 (680)
Q Consensus 528 ~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~ 604 (680)
.+..-+++..+. .++| +......+.++-...|++..|..--+. .. ...|....|..|.+.-.. .
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea-----------a~--r~~pres~~lLlAdIeeAet 376 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA-----------AA--REAPRESAYLLLADIEEAET 376 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH-----------Hh--hhCchhhHHHHHHHHHhhcc
Confidence 233333333221 2344 455666677777777777766543221 11 245777777777766544 4
Q ss_pred CCHHHHHHHHHHHHHCC
Q 005729 605 QRDAEAFAVLQYMKENG 621 (680)
Q Consensus 605 g~~~~A~~~~~~m~~~g 621 (680)
|+-.++..++.+..+..
T Consensus 377 GDqg~vR~wlAqav~AP 393 (531)
T COG3898 377 GDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CchHHHHHHHHHHhcCC
Confidence 88888888888877643
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.06 E-value=0.53 Score=44.67 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCC
Q 005729 188 RQRLTPLTYNALISACARN-----DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI 244 (680)
Q Consensus 188 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 244 (680)
...+|-.+|-+++..|... +.++-.-..++.|++.|+.-|..+|+.||+.+-+..-.
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi 123 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI 123 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc
Confidence 3456777888877777543 45555566677777778777777777777666554433
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.00 E-value=0.97 Score=47.59 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=68.5
Q ss_pred HHHHhcCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005729 308 TALSNSGRTIEAEAVFE--ELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR 385 (680)
Q Consensus 308 ~~~~~~g~~~~A~~l~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 385 (680)
....-.++++++.++.+ ++.. .+ ...-.+.++..+-+.|..+.|+++.+.-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33444566666655553 1111 11 13345556666666666666665443221 12334445566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005729 386 WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR 465 (680)
Q Consensus 386 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 465 (680)
++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++-+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 66665544321 2445555555555566665555555555321 33444445555555555555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005729 466 MLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (680)
Q Consensus 466 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (680)
....| -+|....++.-.|+.++..+++.
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 44433 13344444444555555554443
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.94 E-value=0.16 Score=42.94 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 005729 586 GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRV 639 (680)
Q Consensus 586 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~ 639 (680)
...|+..+..+++.+|+..|++..|+++++...+ .+++-+..+|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999999885 67888899999999755433
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.93 E-value=0.34 Score=49.75 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=54.9
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005729 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKES 329 (680)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (680)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888889999999999999999988875 4653 35888999999999999999999988875
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.38 Score=48.32 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 591 NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSA 670 (680)
Q Consensus 591 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 670 (680)
..+++.|..+|.+.+++.+|++..+..++.+ ++|......-..+|...|+++.|...|+++++ +.|+....+.=+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3568888999999999999999999999854 45777777888999999999999999999998 58888765544444
Q ss_pred HH
Q 005729 671 LR 672 (680)
Q Consensus 671 ~~ 672 (680)
|.
T Consensus 334 l~ 335 (397)
T KOG0543|consen 334 LK 335 (397)
T ss_pred HH
Confidence 43
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=3.7 Score=38.45 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 345 (680)
..|.....+|....++++|...+.+..+. ..-+... +-..+.++.|.-+.++|.+. +--+..|+-...+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555566677777777777766555421 0111111 11123344455555555442 12234456666677
Q ss_pred HHcCCHHHHHHHHHHHH
Q 005729 346 VKMGYLKDAEFVVSEME 362 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~ 362 (680)
..+|..+.|-..+++.-
T Consensus 102 ~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA 118 (308)
T ss_pred HHhCCcchHHHHHHHHH
Confidence 77777777666666543
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=2.1 Score=43.17 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 005729 200 ISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAG 279 (680)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (680)
.+.|.+.|++..|...|++.... +-.....+... .+... ..-..+++.|..+|.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~---------------l~~~~~~~~ee-~~~~~-------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF---------------LEYRRSFDEEE-QKKAE-------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH---------------hhccccCCHHH-HHHHH-------HHHHHHhhHHHHHHHhhh
Confidence 45688999999999999987653 00000111111 11111 112346778888889999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHH-HHHHH
Q 005729 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR-TKAYNALLKGYVKMGYLK-DAEFV 357 (680)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~-~A~~~ 357 (680)
++.+|++..+..+..+ ++|+...---..++...|+++.|+..|+++.+. .|+ -.+-+.|+.+--+..... ...++
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888764 556777777788888888888888888888875 344 334444444444444333 33566
Q ss_pred HHHHHH
Q 005729 358 VSEMER 363 (680)
Q Consensus 358 ~~~m~~ 363 (680)
|..|..
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 666653
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.64 E-value=0.27 Score=46.51 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 297 SPKTATYAAVITALSN-----SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 297 ~p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
+.|..+|...+..+.. .+.++-....++.|.+-|+..|..+|+.|++.+=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3455555555555543 34555566667777777777777777777766543
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.62 E-value=0.68 Score=47.66 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT----ITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
+.+...++.+..+|.+.|++++|...|++.++.. |+. .+|..+..+|.+.|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567788888888999999999999998888764 443 35888888899999999999999888875
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.58 E-value=2.7 Score=36.43 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=16.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
+..+.+.+........++.+...+. .+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333333444444444444443331 333344444444443
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.56 E-value=0.67 Score=39.23 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 005729 505 GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVVTYTTLVDIYGQSGR 560 (680)
Q Consensus 505 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~ 560 (680)
...|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++-....-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 45688888888999998889999999988888766 666678888888876655443
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=94.53 E-value=2.9 Score=36.83 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=57.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 005729 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 457 (680)
.-+...|++++|..+|.-+...++ -+..-|..|..++-..+++++|...|...-..+ .-|...+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 334567777777777777765442 345556666677777777777777777654433 233344445566777777777
Q ss_pred HHHHHHHHHHH
Q 005729 458 HAMAAFDRMLS 468 (680)
Q Consensus 458 ~A~~~~~~m~~ 468 (680)
.|+..|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777765
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=9.7 Score=42.21 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=103.0
Q ss_pred HHHHHHHhcccCCHHHHHHhhCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 005729 166 YSILIHALGRSEKLYEAFLLSQRQRLTPLTYN----ALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRT 241 (680)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 241 (680)
...-++.+.+..-+.-|+.+......+...-. ...+.+.+.|++++|...|-+-... +.|.. +++-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCH
Confidence 34457778888888889888444444444333 3345566899999999999876543 22222 22222111
Q ss_pred CCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005729 242 NKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEA 321 (680)
Q Consensus 242 g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 321 (680)
.+. ...-..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|..
T Consensus 411 q~I--knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 411 QRI--KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHH--HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 111 0112344455555553 33344678889999999988877776544 2211 1123456677777777777766
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 322 VFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (680)
Q Consensus 322 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 362 (680)
+-.+... .....+.+ +-..+++++|.+.+..+.
T Consensus 485 LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6554432 23333333 345578888888887664
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.41 E-value=6.8 Score=40.09 Aligned_cols=139 Identities=16% Similarity=0.214 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCC
Q 005729 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQG-LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLK 588 (680)
Q Consensus 510 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~ 588 (680)
...|...++...+..-++.|..+|.++.+.+ +.++..++++++.-++ .|+..-|.++|+- -|+. -
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifel----------Gl~~---f 462 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFEL----------GLLK---F 462 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHH----------HHHh---C
Confidence 3456666666667777777777777777776 4556777777777665 4566666666540 1111 2
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHH
Q 005729 589 PSNLAL-NSLINAFGEDQRDAEAFAVLQYMKENGLKPD--VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARA 665 (680)
Q Consensus 589 p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 665 (680)
||...| +-.+.-+...++-+.|..+|+..++. +..+ ..+|..+++--...|+...+..+=++|.. ..|...+..
T Consensus 463 ~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~e 539 (660)
T COG5107 463 PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIE 539 (660)
T ss_pred CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHH
Confidence 344333 34445555667777777777755542 2223 45677777766777777777777777765 355554443
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.32 E-value=1.8 Score=42.81 Aligned_cols=173 Identities=9% Similarity=0.028 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQER-GYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG-----LLPNVVT 547 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~ 547 (680)
.|..+..++-+..++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.- .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555554433322 2222 11233345666777778888888888776531 1123467
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC
Q 005729 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN--LALNSLINAFGEDQRDAEAFAVLQYMKE----NG 621 (680)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g 621 (680)
+..|...|.+..++++|.-+.. +|.++.+...-.++.... ...-.|.-++...|++-+|.+.-++..+ .|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~----kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPC----KAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhH----hHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 8888899999999998876544 333333322211111111 1233455667788888888888877664 34
Q ss_pred CCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 622 LKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 622 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
-.+. ......+.+.|...|+.+.|+.-|+...
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2221 2234567788889999999988887754
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=10 Score=41.52 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 005729 512 TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591 (680)
Q Consensus 512 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~ 591 (680)
+.+--+.-+...|+..+|.++-.+.. .||...|..=+.++...+++++-.++-+ .+..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk-----------------skksP 744 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK-----------------SKKSP 744 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh-----------------ccCCC
Confidence 34444445555566666665555443 3455666666666666666554332211 11113
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHH
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAV 648 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 648 (680)
.-|.-.+.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 4455556666666666666666654321 11 345555556666555544
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.18 E-value=2.5 Score=45.23 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNS------FIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFY 443 (680)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~ 443 (680)
..++....-.|+-+.+++.+.+..+.+-.-.. -.|+.++..++. ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555555567777777766665443211111 123333333332 34567777777777765 4665555
Q ss_pred HHH-HHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 444 NVM-IDTFGKYNCLHHAMAAFDRMLSEG---IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (680)
Q Consensus 444 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 519 (680)
... .+.+...|++++|.+.|+...... .......+--+.-.+.-.+++++|.+.|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 344566777888888777654311 11223334445556667788888888888887654 3344444444433
Q ss_pred H-HhcCCH-------HHHHHHHHHHH
Q 005729 520 L-GEQERW-------EDVKRLLGNMR 537 (680)
Q Consensus 520 ~-~~~g~~-------~~A~~~~~~m~ 537 (680)
| ...|+. ++|..++.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 345655 66666666554
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.16 E-value=3.2 Score=35.99 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (680)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 524 (680)
.++..+...+.......+++.+.+.+ ..+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444555555666666555544 245555666666665543 2333333331 112233334555555555
Q ss_pred CHHHHHHHHHHH
Q 005729 525 RWEDVKRLLGNM 536 (680)
Q Consensus 525 ~~~~A~~~~~~m 536 (680)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.04 E-value=6 Score=42.36 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=97.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQERG-YFPCT-----TTYNIMINLLG----EQERWEDVKRLLGNMRAQGLLPNVVTYT 549 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~t~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 549 (680)
.++....-.|+-+.+++++.+..+.+ +.-.. ..|+.++..++ .....+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444444566666666665554432 11111 12333333333 245678888999888875 45655554
Q ss_pred H-HHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 550 T-LVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVT 628 (680)
Q Consensus 550 ~-li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 628 (680)
. -.+.+...|++++|++.++...+ .-..+.+ .....+--+.+.+.-.++|++|.+.|.++.+.. .-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~----~q~~~~Q----l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIE----SQSEWKQ----LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhcc----chhhHHh----HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 3 34566778888888888763331 1112222 223456667778888999999999999999743 334455
Q ss_pred HHHHHH-HHHhcCCc-------CcHHHHHHHHHH
Q 005729 629 YTTLMK-ALIRVDKF-------HKVPAVYEEMIL 654 (680)
Q Consensus 629 ~~~l~~-~~~~~g~~-------~~A~~~~~~m~~ 654 (680)
|..+.. ++...|+. ++|.+++++...
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 554443 34667777 788888887753
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.93 E-value=8.5 Score=39.42 Aligned_cols=438 Identities=11% Similarity=0.093 Sum_probs=214.9
Q ss_pred CchHHHHHHHHHHhcccCCHHHHHHh-hCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 005729 160 YSYELLYSILIHALGRSEKLYEAFLL-SQRQRL---TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVI 235 (680)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 235 (680)
|.+...|-.||.-|...|++++.+++ .+...| =+.+|..-+.+=...+++.....+|.+.....+. ...|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 77788899999999999999998887 443333 3458999999888889999999999999887544 44555555
Q ss_pred HHHHhcCCCC----hHHHHHHHHHHHh-CCCCcC-HHHHHHHHHHHH---HcCC------HHHHHHHHHHHHhCCCCCCH
Q 005729 236 QSLTRTNKID----SSLLQKLYKEIEC-DKIELD-GQLLNDVIVGFA---KAGD------ASKAMRFLGMAQGVGLSPKT 300 (680)
Q Consensus 236 ~~~~~~g~~~----~~~~~~l~~~~~~-~~~~~~-~~~~~~li~~~~---~~g~------~~~A~~~~~~~~~~g~~p~~ 300 (680)
.-..+..... ....-+.|+-... .+++|- ...|+..+...- ..|. .+...+.+.+++..-+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 4443332111 1122344544433 455443 345555444321 2233 34455556555542110001
Q ss_pred HHHH------HHHHHHHh-------cCChHHHHHHHHHHHH--cCC----CCCHHHHHHHHH-----------HHHHcC-
Q 005729 301 ATYA------AVITALSN-------SGRTIEAEAVFEELKE--SGL----KPRTKAYNALLK-----------GYVKMG- 349 (680)
Q Consensus 301 ~~~~------~li~~~~~-------~g~~~~A~~l~~~m~~--~g~----~p~~~~~~~li~-----------~~~~~g- 349 (680)
..|+ .=++-... .--+..|.+.++++.. .|. +.+..++|-.-+ .-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1111 11111111 1113345555555532 222 122333332111 111000
Q ss_pred ----C-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHH
Q 005729 350 ----Y-L-KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL-AGYRDRGEWQ 422 (680)
Q Consensus 350 ----~-~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~g~~~ 422 (680)
+ . ....-++++.... +......|----.-+...++-+.|++....-... .|+ .+..+ ..|--..+-+
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~e 350 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDEE 350 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccHH
Confidence 0 0 0111111111111 0112222322223333445555555544432211 122 22222 2222233333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---------cCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 005729 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGK---------YNCLHHAMAA-FDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (680)
Q Consensus 423 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 492 (680)
.....|+.+.+ .|.+-|.+ -|+.+...++ +.+. ..-...|...++.-.+..-.+
T Consensus 351 ~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~-----~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 351 AVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI-----NKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred HHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH-----hhhhhHHHHHHHHHHHHhhHH
Confidence 33333333221 01111100 1112111111 1111 123455667777777777788
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHhh
Q 005729 493 RAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT-YTTLVDIYGQSGRFDDAIECLEG 570 (680)
Q Consensus 493 ~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~ 570 (680)
.|..+|-+..+.| +.+++..+++++..++. |+..-|..+|+--... -||... -...+..+...++-..|..+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8888888888777 56777788888876664 5667778888765553 234333 34556666677777777777763
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 571 LSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636 (680)
Q Consensus 571 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 636 (680)
.+++.... . -...|..+|.--.+-|++..|..+-++|.+ +.|-..+.....+-|
T Consensus 492 sv~r~~~~----q------~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 492 SVERLEKT----Q------LKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred hHHHHHHh----h------hhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 33321110 0 013566666666777888888877777776 455544444444333
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=93.90 E-value=5.2 Score=41.52 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 005729 526 WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGED 604 (680)
Q Consensus 526 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~ 604 (680)
..+|.+.-.+..+.+ .-|......+..+..-.|+++.|...|+ +... +.||.. +|......+...
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~-----------rA~~--L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFE-----------QAKI--HSTDIASLYYYRALVHFHN 385 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHH-----------HHhh--cCCccHHHHHHHHHHHHHc
Confidence 445556666666543 2266666666666666666666655543 2222 456654 555555555557
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcCcHHHHHHH
Q 005729 605 QRDAEAFAVLQYMKENGLKPDV---VTYTTLMKALIRVDKFHKVPAVYEE 651 (680)
Q Consensus 605 g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 651 (680)
|+.++|.+.+++..+ +.|.. .+....++.|+..+ +++|+.+|-+
T Consensus 386 G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 386 EKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred CCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 777777777777665 44532 33334445565554 5666666544
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.76 E-value=3.6 Score=34.53 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=65.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF 356 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 356 (680)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+ --|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 346666667766665542 3444555555544444443333344333322 1121 12233333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436 (680)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 436 (680)
.+-.+-. +.......++.+.++|+.|+-.+++..+.+ +-.++......+..+|.+.|+..++-+++++..+.|+
T Consensus 78 C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3222211 233444556666777777777777777654 2355666666777777777777777777777766663
No 245
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.75 E-value=13 Score=41.33 Aligned_cols=168 Identities=12% Similarity=0.103 Sum_probs=69.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH--
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEPDTITWNTLIDCHFK-- 487 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~-- 487 (680)
....+.-.|+++.|.+.+-. ..+...+.+.+...+..|+-.+-.+... ..+.... -.+....+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667889999988776 2222455555555555443322222211 3222211 01222567788888876
Q ss_pred -cCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHH-----------HHHHHHHH-CCCCC-CHH---HHH
Q 005729 488 -CGRYDRAEELFEEMQERGYFPCTTTYNIMI-NLLGEQERWEDVK-----------RLLGNMRA-QGLLP-NVV---TYT 549 (680)
Q Consensus 488 -~g~~~~A~~~~~~m~~~~~~p~~~t~~~li-~~~~~~g~~~~A~-----------~~~~~m~~-~~~~p-~~~---~~~ 549 (680)
..+..+|.++|--+....-+.....+...+ +.....++++.-. -++++-.+ .++.. +.. +..
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 356778888887766543211122222222 2222233222111 11111000 01221 222 223
Q ss_pred HHHHHHHhcCChHHHHHHHh--hhHHHHHHHHHHHH
Q 005729 550 TLVDIYGQSGRFDDAIECLE--GLSDQAVNAFRVMR 583 (680)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~--~~~~~a~~~~~~m~ 583 (680)
....-+...|++++|+.+|. +..+.++++.....
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L 454 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33455677888888888876 44555555554443
No 246
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.61 E-value=1.4 Score=39.30 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 005729 526 WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR---FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAF 601 (680)
Q Consensus 526 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~ 601 (680)
++.|.+..+.-...+ +.|...++.-..++....+ ..++.+ ++++|+.-|++... +.|+.. ++..+..+|
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~----miedAisK~eeAL~--I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKK----MIEDAISKFEEALK--INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHH----HHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHH----HHHHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 344555555443332 2355555555555444433 344443 44567777777776 678874 888888888
Q ss_pred HhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCC
Q 005729 602 GEDQR-----------DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 602 ~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 660 (680)
...+. +++|.+.|++..+ ..|+..+|+.-+... ++|.++..++.+++..+.
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhhhh
Confidence 65543 5566666666666 689999999887765 468999999888765544
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=15 Score=40.74 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=92.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 351 (680)
...+.+.|++++|...|-+-... +.|. .+|.-|....++.+--.+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34456789999999888765542 2232 3566667777777788888888888874 555667789999999998
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 352 KDAEFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE 430 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 430 (680)
+.-.++.+... .|.. .| ....+..+.+.+-.++|..+-..... +...... .+-..+++++|++.+..
T Consensus 448 ~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhc
Confidence 88777776655 3322 12 23455666666777777665554432 2233332 34456778888887776
Q ss_pred H
Q 005729 431 M 431 (680)
Q Consensus 431 m 431 (680)
|
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 5
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.26 E-value=0.91 Score=44.02 Aligned_cols=79 Identities=25% Similarity=0.309 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHH-----cCCCCCHHHHH
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMIL-----SGCTPDRKARA 665 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 665 (680)
.++..++..+...|+.+.+...+++..+. .| |...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 35777888999999999999999999984 45 888999999999999999999999998875 69999999988
Q ss_pred HHHHHHH
Q 005729 666 MLRSALR 672 (680)
Q Consensus 666 ~l~~a~~ 672 (680)
...++++
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 8887754
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=7.5 Score=38.19 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=60.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHH
Q 005729 382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS---GVEPDTHFYNVMIDTFGKYNCLHH 458 (680)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~ 458 (680)
.+|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.....++++.-. +++..+....+..-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 355666666666666543 3445555555556666666666655555555432 111112222233333445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005729 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (680)
Q Consensus 459 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (680)
|++.-++..+.+ +.|...-.++...+-..|++.++.+...+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666665555443 33444555555555556666666655544
No 250
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.05 E-value=11 Score=37.98 Aligned_cols=302 Identities=15% Similarity=0.095 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 336 KAYNALLKGYVK--MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA--YANAGRWESARIVLKEMEVSHAKPNSFIYSRI 411 (680)
Q Consensus 336 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 411 (680)
..|..|-.++.. .|+-..|.++-.+-.+. +.-|....-.|+.+ -.-.|+++.|.+-|+.|... +..-..-+..|
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgL 160 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGL 160 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHH
Confidence 445555555544 46777777766554421 12244443334433 33479999999999999852 11111122333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHH-
Q 005729 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEPDTIT--WNTLIDCHFK- 487 (680)
Q Consensus 412 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~~~- 487 (680)
.-.-.+.|+.+.|.+.-+..-..- +--...+...+...|..|+++.|+++.+.-.... +.++..- -..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 344467889999988888766543 3345678889999999999999999998766432 3344321 2223332211
Q ss_pred --cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005729 488 --CGRYDRAEELFEEMQERGYFPCTTT-YNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 488 --~g~~~~A~~~~~~m~~~~~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 564 (680)
.-+...|...-.+..+. .|+... -..-..++.+.|+..++-.+++.+-+....|+ +...++ +.+.|+..
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~--~ar~gdta-- 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYV--RARSGDTA-- 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHH--HhcCCCcH--
Confidence 23455566555555443 455433 33345678999999999999999999754444 333322 34555432
Q ss_pred HHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCc
Q 005729 565 IECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV-DKF 642 (680)
Q Consensus 565 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~ 642 (680)
+.-++ . .+++.. ++||. .....+..+-...|++..|..--+.... ..|....|..|.+.-... |+-
T Consensus 312 ~dRlk----R----a~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 312 LDRLK----R----AKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHHHH----H----HHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCch
Confidence 22211 1 112222 34554 4667777888889999998887776666 678889999888876544 999
Q ss_pred CcHHHHHHHHHHcCCCCC
Q 005729 643 HKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 643 ~~A~~~~~~m~~~g~~pd 660 (680)
.++..++-+.++.--.|+
T Consensus 380 g~vR~wlAqav~APrdPa 397 (531)
T COG3898 380 GKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHHHHHHhcCCCCCc
Confidence 999999998887544443
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.03 E-value=1.8 Score=45.60 Aligned_cols=130 Identities=17% Similarity=0.127 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
.+.++..+-+.|.++.|+++... .. .-.....+.|+++.|.++.++. .+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44555555555666666555321 11 2233444555555555543322 244566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 427 (680)
+|+++-|++.|.+..+ +..|+-.|.-.|+.+...++.+.....|. ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655442 33444555555665555555555444431 34444444445555555544
Q ss_pred HHH
Q 005729 428 LKE 430 (680)
Q Consensus 428 ~~~ 430 (680)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=8.1 Score=36.29 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG 274 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~ 274 (680)
.|..-..+|...+++++|-..+.+..+. ..-+...|. ..+++- .+-.+.+++.+ ++--+..++....+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AAKayE--------qaamLake~~k--lsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AAKAYE--------QAAMLAKELSK--LSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HHHHHH--------HHHHHHHHHHH--hHHHHHHHHHHHHH
Confidence 4556666777777777777766665532 111111111 111111 11122222221 11223455666667
Q ss_pred HHHcCCHHHHHHHHHHH
Q 005729 275 FAKAGDASKAMRFLGMA 291 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~ 291 (680)
|..+|.++.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 77777777766666544
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.81 E-value=4.1 Score=34.10 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=64.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCC
Q 005729 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT---KAYNALLKGYVKMGY 350 (680)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~ 350 (680)
+....|+++.|++.|.+.+.. .+.....||.-..++.-.|+.++|++=+++..+..-.... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 566788899999988887764 2346778888888888888888888888887664322121 234444455677788
Q ss_pred HHHHHHHHHHHHHCC
Q 005729 351 LKDAEFVVSEMERSG 365 (680)
Q Consensus 351 ~~~A~~~~~~m~~~g 365 (680)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877766
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.73 E-value=9.3 Score=36.34 Aligned_cols=167 Identities=11% Similarity=0.049 Sum_probs=85.8
Q ss_pred HHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005729 486 FKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (680)
.+.|++++|.+.|+.+.... -+-...+...++-++-+.+++++|....++..+........-|...+.+++..-.++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 35566666666666665431 1122334444555555666666666666666554222122223333333332111111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHC----CCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 005729 564 AIECLEGLSDQAVNAFRVMRTD----GLKPSNLA------------LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV- 626 (680)
Q Consensus 564 A~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 626 (680)
..+-- ....+|..-|+...+. ...||... =..+.+-|.+.|.+-.|..-+++|++. .+-..
T Consensus 125 ~~rDq-~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 125 VTRDQ-SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred cccCH-HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 00000 1111222223333332 11222211 134567789999999999999999985 33233
Q ss_pred --HHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 627 --VTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 627 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
..+-.+..+|.+.|-.++|...-+-+-.
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3455667889999998888877655543
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.59 E-value=8.8 Score=35.74 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERS-GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (680)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 413 (680)
...+......+...+.+..+...+...... ........+..+...+...++...+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555555566666665555555431 112234445555555555555666666666555433222 111111222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005729 414 -GYRDRGEWQRTFQVLKEMKSSGV--EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR 490 (680)
Q Consensus 414 -~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 490 (680)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 55666666666666666543210 012233333333345566666666666666654311134556666666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
++.|...+....... +.....+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777776666543 111333333333334555666666666666654
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=3.2 Score=40.68 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=103.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHH
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT----KAYNALLKGYVKMGYLK 352 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 352 (680)
-.|+..+|...++++++. .+.|..+++..=++|.-+|+.+.-...++++... ..+|. .+-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457788888888887764 4567778888888888899988888888887753 12333 33344455566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK---PNSFIYSRILAGYRDRGEWQRTFQVLK 429 (680)
Q Consensus 353 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~l~~ 429 (680)
+|++.-++..+.+ +.|.-.-.++.+.+--.|+..++.+.+.+-...--. .-.+-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888888765 446666777788888889999988877654321100 011222233344566688888888887
Q ss_pred H
Q 005729 430 E 430 (680)
Q Consensus 430 ~ 430 (680)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 6
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.05 E-value=14 Score=36.83 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSS-GVEP---DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-----IEPDTITW 478 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~ 478 (680)
|..+.+++.+..++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.. .......+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444555555444433221 1111 11223345555666666777777776655421 11123456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYN-----IMINLLGEQERWEDVKRLLGNMRAQ----GLLP-N 544 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~-----~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 544 (680)
-.|-..|.+..++++|.-+..+..+. ++.--..-|. .|.-++...|+.-.|.+..++..+. |-.+ .
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 66777777777777776665554321 2111112222 2334556677777777766665442 3322 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
......+.+.|...|+.+.|+.-|+
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHH
Confidence 3445667788888888888776665
No 258
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.88 E-value=18 Score=37.80 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (680)
Q Consensus 438 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 517 (680)
.|.....+++..++.+-.+.-.+.+-.+|...| -+-..|..++++|..+ ..++-..+|+++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344555555566665555555555656665543 3444555566666555 34555556665555542 2222223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005729 518 NLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~ 538 (680)
..|.+ ++...+..+|.++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHH
Confidence 33333 555555555555544
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=91.87 E-value=13 Score=38.60 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534 (680)
Q Consensus 455 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 534 (680)
+..+|.+.-++..+.+ +.|......+..++...++++.|..+|++....+ +....+|......+...|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556667777777766 4577777777777777888999999999888775 4445666666667777899999999888
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 005729 535 NMRAQGLLPN---VVTYTTLVDIYGQSGRFDDAIECL 568 (680)
Q Consensus 535 ~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 568 (680)
+..+. .|. ..+....++.|+..+ +++|++++
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 87764 342 223334445666553 55666554
No 260
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.87 E-value=14 Score=36.60 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=10.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 005729 285 MRFLGMAQGVGLSPKTATYAA 305 (680)
Q Consensus 285 ~~~~~~~~~~g~~p~~~~~~~ 305 (680)
+++++.|.+.|+..+..+|-+
T Consensus 82 ~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHhccCccChHHHH
Confidence 344555555555555544443
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.85 E-value=6.6 Score=32.91 Aligned_cols=91 Identities=16% Similarity=0.037 Sum_probs=49.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 005729 309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEH---TYSLLIDAYANAGR 385 (680)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 385 (680)
++...|+.+.|++.|.+.+.. .+.+...||.-..++.-.|+.++|.+-+++..+..-..... .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777666654 23456667777777777777777766666665432111211 12222233444555
Q ss_pred HHHHHHHHHHHHHCC
Q 005729 386 WESARIVLKEMEVSH 400 (680)
Q Consensus 386 ~~~A~~~~~~m~~~~ 400 (680)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555544433
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=14 Score=35.95 Aligned_cols=140 Identities=10% Similarity=0.072 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005729 417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE 496 (680)
Q Consensus 417 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 496 (680)
..|++.+|..+|+...+.. +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3444444444444444332 222334444455555555555555555544322111111111112233333333333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 005729 497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQSGR 560 (680)
Q Consensus 497 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 560 (680)
+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+++. |.. |...-..|++.+.-.|.
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 33333221 224445555555566666666666555555443 222 34444555555555553
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.63 E-value=4 Score=39.06 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 005729 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD----GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN-G 621 (680)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 621 (680)
.|+.-++.| +.|++.+|...|. ...+. -..|+ .+--|..++...|++++|..+|..+.+. +
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~-----------~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQ-----------AFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHH-----------HHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 466555544 5677877776654 44443 22233 3445899999999999999999999863 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHH
Q 005729 622 LKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAM 666 (680)
Q Consensus 622 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 666 (680)
-.| -+..+..|.....+.|+.++|..+|+++++. .|+...-..
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~aA~~ 253 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR--YPGTDAAKL 253 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 223 3477888889999999999999999999986 666655433
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.61 E-value=11 Score=34.93 Aligned_cols=224 Identities=18% Similarity=0.130 Sum_probs=151.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005729 278 AGDASKAMRFLGMAQGVGLS-PKTATYAAVITALSNSGRTIEAEAVFEELKES-GLKPRTKAYNALLKGYVKMGYLKDAE 355 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (680)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566665555543211 13566777778888888888888888777652 23445566677777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 356 FVVSEMERSGVLPDEHTYSLLID-AYANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887654332 222223333 68888999999999888855221 1233444445555677888999999988887
Q ss_pred HCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 433 SSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 433 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
... .. ....+..+...+...++.+.+...+....... ++ ...+..+...+...+..+.+...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 653 23 46778888888888889999999999888753 33 3445555555557777899998888887764
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.57 E-value=2.1 Score=41.60 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 005729 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT 550 (680)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 550 (680)
.++..++..+..+|+.+.+.+.++++.+.. +-+...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666666666666666665 55666666677777777766666666666544 366666666555
Q ss_pred HHHH
Q 005729 551 LVDI 554 (680)
Q Consensus 551 li~~ 554 (680)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=14 Score=35.88 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=22.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (680)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 362 (680)
....|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344445555555554444432 1122333334444445555555555544443
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=9.6 Score=35.57 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=50.8
Q ss_pred HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC--CCCCCHHH---H
Q 005729 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGED-QRDAEAFAVLQYMKEN--GLKPDVVT---Y 629 (680)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~--g~~p~~~~---~ 629 (680)
.+.+++.+|.++++ .|+++|..|-+- ..-...+..+...|-.. .+++.|+..|++.-+. |-..+... +
T Consensus 84 ykk~~~~eAv~cL~----~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~ 157 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLE----KAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCL 157 (288)
T ss_pred hhccChHHHHHHHH----HHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 34456777765543 566666666542 11111233445555433 5677777777776641 21222222 2
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHcCC
Q 005729 630 TTLMKALIRVDKFHKVPAVYEEMILSGC 657 (680)
Q Consensus 630 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 657 (680)
..+...-...+++.+|+++|++..+..+
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222333566778888888888776543
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.33 E-value=0.62 Score=30.90 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTL 632 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 632 (680)
+|..+..+|...|++++|+++++++.+. .| |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 4666777777778888888887777773 34 44444443
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.96 E-value=17 Score=35.80 Aligned_cols=102 Identities=11% Similarity=0.113 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLH---HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 517 (680)
.+...++.+|...+..+ +|..+.+.+.+.. .-....+-.-+..+.+.++.+.+.+.+.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45566677777766544 4455555554332 2234455555666666888888888888888763 21234444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 005729 518 NLL---GEQERWEDVKRLLGNMRAQGLLPNV 545 (680)
Q Consensus 518 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 545 (680)
..+ ... ....+...+..++...+.|..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 443 332 334566666666655455544
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.69 E-value=0.59 Score=29.39 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQ 221 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (680)
+|+.|...|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999653
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.43 E-value=17 Score=34.70 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV--LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR 410 (680)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 410 (680)
|-...|+.-+ .-.+.|++++|...|+.+....+ +-...+.-.++.++.+.+++++|+...++.....+.....-|..
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3334455443 34567788888888888875421 12344555666777778888888888887776554433344444
Q ss_pred HHHHHHhc-------CCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 411 ILAGYRDR-------GEWQR---TFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT 480 (680)
Q Consensus 411 ll~~~~~~-------g~~~~---A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 480 (680)
.|.+.+.- .|... |+.-|+++.+. -||+ .-...|......+... =...=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHH
Confidence 44444321 11222 22222222221 1211 1111222211111100 0000123
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 481 LIDCHFKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
+..-|.+.|.+..|..-+++|++.- ..-....+-.+..+|...|-.++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4556778888888888888887761 111233455566777777877777766655544
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.22 E-value=13 Score=33.14 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
+..++..+...|++-+|.++.+..... +......++.+-.+.+|...-..+|+-..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455555556555555555543221 11112234444444555444444444443
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.12 E-value=11 Score=32.36 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 484 CHFKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ 557 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 557 (680)
...+.|++++|.+.|+.+..+- -+-....-..++.++.+.+++++|...+++.++.+..-...-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3456778888888888777651 0223345556777777888888888888888776433223344444444443
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.06 E-value=1.2 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
|..+...|.+.|++++|.++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444455555555555544444
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.70 E-value=22 Score=35.05 Aligned_cols=160 Identities=11% Similarity=0.151 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 407 IYSRILAGYRDRGEW---QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~---~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 483 (680)
++..++.+|...+.. ++|..+++.+.... .-...++..-++.+.+.++.+.+.+++.+|...- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 556667777766654 45556666664432 2335556566677777888888888888888652 113344555555
Q ss_pred HH---HHcCChhHHHHHHHHHHHCCCCCCHH-HHHH-HHH-H--HHhc------CCHHHHHHHHHHHHHC-CCCCCHHHH
Q 005729 484 CH---FKCGRYDRAEELFEEMQERGYFPCTT-TYNI-MIN-L--LGEQ------ERWEDVKRLLGNMRAQ-GLLPNVVTY 548 (680)
Q Consensus 484 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~-li~-~--~~~~------g~~~~A~~~~~~m~~~-~~~p~~~~~ 548 (680)
.+ ... ....|...+..+....+.|... .... ++. . ..+. ++++....+++.+.+. +.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44 332 3455666666665443444443 1111 111 1 1111 1255555566644433 333344443
Q ss_pred HHHH-------HHHHhcCChHHHHHHHh
Q 005729 549 TTLV-------DIYGQSGRFDDAIECLE 569 (680)
Q Consensus 549 ~~li-------~~~~~~g~~~~A~~~~~ 569 (680)
.++. ..+.+.++++.|.+.|+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3332 33556777777776654
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.63 E-value=47 Score=38.74 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcc
Q 005729 376 LIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH--FYNVMIDTFGKY 453 (680)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~li~~~~~~ 453 (680)
..+.+...+.+++|--.|+..-+ ....+.+|...|+|.+|+.+..++... .+.. +-..|+.-+...
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 33344445556666555544321 122345566666666666666554321 1111 113344444445
Q ss_pred CCHHHHHHHHHHHH
Q 005729 454 NCLHHAMAAFDRML 467 (680)
Q Consensus 454 g~~~~A~~~~~~m~ 467 (680)
++.-+|-++..+..
T Consensus 1013 ~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYL 1026 (1265)
T ss_pred ccchhHHHHHHHHh
Confidence 55555555444443
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.57 E-value=5.4 Score=36.19 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKE 328 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (680)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566778888888888888888888877544443 34566777888888888887777766543
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.46 E-value=11 Score=32.51 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005729 346 VKMGYLKDAEFVVSEMERSGV--LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH 400 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 400 (680)
.+.|++++|.+.|+.+...-. +-.....-.|+.+|.+.+++++|...+++..+..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555555555554310 1123334445555555555555555555555544
No 279
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.36 E-value=5.8 Score=38.00 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 005729 454 NCLHHAMAAFDRMLSEGI--EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-Y-FPCTTTYNIMINLLGEQERWEDV 529 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~-~p~~~t~~~li~~~~~~g~~~~A 529 (680)
|++..|...|...++... ......+--|..++...|+++.|..+|..+.+.- - +--...+..|.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 445555555555444321 0112233345555555555555555555554431 0 11124444555555556666666
Q ss_pred HHHHHHHHHC
Q 005729 530 KRLLGNMRAQ 539 (680)
Q Consensus 530 ~~~~~~m~~~ 539 (680)
...|+++.+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.32 E-value=0.87 Score=28.60 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 594 LNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 594 ~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
|..|...|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666667777777777666643
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.15 E-value=32 Score=36.14 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 339 NALLKGYVKMGYLKDAEFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 339 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
..|..++-+.|+.++|.+.+++|.+.... -+......|+.+|...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33555555667777777777777654221 1334566677777777777777777776643
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.01 E-value=16 Score=32.46 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=57.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHHcCCH
Q 005729 276 AKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNAL--LKGYVKMGYL 351 (680)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~~ 351 (680)
.+.+..++|+..|..+.+.|...- +....-......+.|+...|...|.++-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345666666666666665543211 1122222334455666666666666655443333222 11111 1123345555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
++...-.+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555544433233333334444444555666666666655543
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.99 E-value=33 Score=36.06 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSG-VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (680)
..+..++.+.|+.++|.+.+++|.+.. ..........|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344455555666666666666655432 11223345556666666666666666655543
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.94 E-value=11 Score=33.79 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 528 DVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGR----FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFG 602 (680)
Q Consensus 528 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 602 (680)
+|..-|++.+. +.|+ ..++..+..+|...+. ..+|.+. .++|.+.|++... ..|+..+|+.-+...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~----F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~- 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEY----FEKATEYFQKAVD--EDPNNELYRKSLEMA- 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHH--H-TT-HHHHHHHHHH-
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHH----HHHHHHHHHHHHh--cCCCcHHHHHHHHHH-
Confidence 34444444444 4565 5788888888876654 3344444 4578888888887 579999999888877
Q ss_pred hcCCHHHHHHHHHHHHHCCC
Q 005729 603 EDQRDAEAFAVLQYMKENGL 622 (680)
Q Consensus 603 ~~g~~~~A~~~~~~m~~~g~ 622 (680)
..|-++..++.+.++
T Consensus 124 -----~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -----AKAPELHMEIHKQGL 138 (186)
T ss_dssp -----HTHHHHHHHHHHSSS
T ss_pred -----HhhHHHHHHHHHHHh
Confidence 346777777766544
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.86 E-value=41 Score=36.99 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCChhHH
Q 005729 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF----KCGRYDRA 494 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A 494 (680)
+.+.|..++.+....| .|+....-..+..... ..+...|.++|....+.|.. .... .+..+|. ...+...|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~--~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIY--RLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHH--HHHHHHHhCCCcCCCHHHH
Confidence 4455666666666655 3444443333333332 34566777777777766531 2222 2222221 12356777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL 541 (680)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 541 (680)
..++.+..++| .|...--...+..+.. ++++.+.-.+..+...|.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 77777777776 3322222222223333 666666666665555543
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.50 E-value=0.41 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=11.6
Q ss_pred CchHHHHHHHHHHhcccCCHHHH
Q 005729 160 YSYELLYSILIHALGRSEKLYEA 182 (680)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A 182 (680)
|.+..+|+.|...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44444555555555555555444
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.29 E-value=1.2 Score=27.35 Aligned_cols=31 Identities=35% Similarity=0.286 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (680)
+|..+..+|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777777777777777776 4443
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.18 E-value=51 Score=37.26 Aligned_cols=200 Identities=16% Similarity=0.092 Sum_probs=108.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 005729 451 GKYNCLHHAMAAFDRMLSEGIEPDT-------ITWNTLIDC-HFKCGRYDRAEELFEEMQER----GYFPCTTTYNIMIN 518 (680)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~li~ 518 (680)
.....+.+|..+..++...-..|+. ..|+.+-.. ....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456788888888776643222221 134444222 23478889999888876543 23345666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC--CCC---
Q 005729 519 LLGEQERWEDVKRLLGNMRAQGLLPNVV---TYTTL--VDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD--GLK--- 588 (680)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l--i~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~--g~~--- 588 (680)
+..-.|++++|..+.....+..-.-+.. .+..+ ...+...|....+.... .|...... +-+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~---------~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEK---------AFNLIREQHLEQKPRH 576 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------HHHHHHHHHhhhcccc
Confidence 8888899999998887776542222322 22333 23355666333332221 12221111 011
Q ss_pred -CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCC
Q 005729 589 -PSNLALNSLINAFGE-DQRDAEAFAVLQYMKENGLKPDVV--TYTTLMKALIRVDKFHKVPAVYEEMILSGCTP 659 (680)
Q Consensus 589 -p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 659 (680)
+-..++..+..++.+ .+...++...++.-......|-.. .+..|+......|++++|...+.++......+
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 222355556666554 233333433344333322222112 22356778888999999999998888665444
No 289
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.17 E-value=49 Score=37.04 Aligned_cols=273 Identities=10% Similarity=0.020 Sum_probs=144.5
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005729 148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD 227 (680)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 227 (680)
++-..+.++...|....+-..-...+++.+++.+-+......+.+.........+....|+.++|....+.+=..|. ..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~ 162 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SL 162 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CC
Confidence 34444444443344444455556667777777777665334456666677778888888988888877777766553 35
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCC
Q 005729 228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK------------AGDASKAMRFLGMAQGVG 295 (680)
Q Consensus 228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g 295 (680)
+..++.++..+.+.|.+..+...+-+......|- ...-..+...... ..+...+..++..
T Consensus 163 p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~----- 234 (644)
T PRK11619 163 PNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART----- 234 (644)
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----
Confidence 6677888888888887766544443444443332 2222222221100 0111111111111
Q ss_pred CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 005729 296 LSPKTATYAAVITALS--NSGRTIEAEAVFEELKESG-LKPR--TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE 370 (680)
Q Consensus 296 ~~p~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 370 (680)
+.++...-..++-++. ...+.+.|..++..+.... ..+. ..++..+.......+...++...++...... .+.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence 1122211111122221 2445577888887764332 2211 1233344333333332556666666544332 233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
....--+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+.
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444444555557888888888888774432 2233334445666666788888888888864
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.09 E-value=7.5 Score=35.28 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYSLLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345555566666666666666666554322221 2334445555555666665555555443
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.96 E-value=61 Score=37.90 Aligned_cols=75 Identities=15% Similarity=0.246 Sum_probs=35.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTT--TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (680)
+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-++..+.... ..-.+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44455555555555555444321 1111 1234555555666666666665555431 122334455555
Q ss_pred ChHHHHHH
Q 005729 560 RFDDAIEC 567 (680)
Q Consensus 560 ~~~~A~~~ 567 (680)
.+++|+++
T Consensus 1041 ~~~eAlrv 1048 (1265)
T KOG1920|consen 1041 EWEEALRV 1048 (1265)
T ss_pred HHHHHHHH
Confidence 56666554
No 292
>PRK09687 putative lyase; Provisional
Probab=87.78 E-value=30 Score=34.13 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHHCCCCC
Q 005729 438 PDTHFYNVMIDTFGKYNCL----HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR-----YDRAEELFEEMQERGYFP 508 (680)
Q Consensus 438 p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p 508 (680)
++...-...+.+++..|+. ..+...+..+... .++...-...+.++...+. ...+...+..+... +
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---K 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---C
Confidence 3444444455555555542 3444455444222 3444444444444444332 12233333333222 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHhhhHHHHHHHHHHHHHCCC
Q 005729 509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR-FDDAIECLEGLSDQAVNAFRVMRTDGL 587 (680)
Q Consensus 509 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~a~~~~~~m~~~g~ 587 (680)
+..+-...+.++.+.++ +++...+-.+.+ .++..+-...+.++.+.+. ...+... +..+. .
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~-----------L~~~L---~ 202 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREA-----------FVAML---Q 202 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHH-----------HHHHh---c
Confidence 44555566666666665 445555555554 2344555555555555421 2223222 22222 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAML 667 (680)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 667 (680)
.++..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|. .+|...+.++.+. .||..+....
T Consensus 203 D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~~--~~d~~v~~~a 273 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLYK--FDDNEIITKA 273 (280)
T ss_pred CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHhh--CCChhHHHHH
Confidence 4566666777778888777 45666555555532 2 23467778888887 4688888888764 5688888777
Q ss_pred HHHHH
Q 005729 668 RSALR 672 (680)
Q Consensus 668 ~~a~~ 672 (680)
..+|.
T Consensus 274 ~~a~~ 278 (280)
T PRK09687 274 IDKLK 278 (280)
T ss_pred HHHHh
Confidence 77765
No 293
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.41 E-value=25 Score=32.92 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=13.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 005729 602 GEDQRDAEAFAVLQYMKENGLK 623 (680)
Q Consensus 602 ~~~g~~~~A~~~~~~m~~~g~~ 623 (680)
+..+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456667777777766654333
No 294
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=87.36 E-value=38 Score=34.89 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCC
Q 005729 594 LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCT 658 (680)
Q Consensus 594 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 658 (680)
...|+.-|...|+..+|..+++++-- .+......+.+++.+..+.|+-...+.++++.-..|+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 45688889999999999998776532 12224578889999999999888888999988877753
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.11 E-value=23 Score=32.19 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 596 SLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
.|.......|.+++|+..++.....+. .......-.+++...|+.++|..-|++.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 455667788888888888887665432 23334556678888899999999999988876
No 296
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.03 E-value=20 Score=34.81 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=48.9
Q ss_pred HcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHHcCCHH
Q 005729 205 RNDDLEKALNLMSKMRQ-DGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIEC-DKIELDGQLLNDVIVGFAKAGDAS 282 (680)
Q Consensus 205 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 282 (680)
++..+.+|+.+|+.... ..+--|......+++......+.......++.+.+.. .+-.++..+.-.++..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456677777774322 1233455555666665554222111111222222221 123344444444444555555555
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 005729 283 KAMRFLGMAQGV-GLSPKTATYAAVITALSNSGRT 316 (680)
Q Consensus 283 ~A~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~ 316 (680)
+-.++++..... +...|...|..+|+...+.|+.
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 544444443322 2333444444444444444443
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.00 E-value=1.9 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
.|..+..++.+.|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566666667777777777776665
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.83 E-value=25 Score=31.34 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005729 286 RFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSG 365 (680)
Q Consensus 286 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 365 (680)
++.+.+.+.|+.|+...|..+++.+.+.|++... ..+...++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3445555666777777777777777777765443 33334444444444333332222 2223333333333321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 366 VLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013455666777777777777777664
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.75 E-value=3 Score=40.93 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=71.0
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTT 631 (680)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 631 (680)
+-|.++|.+++|+++|.... ...| |.+++..-..+|.+..++..|..-...++..+ ..-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i-------------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSR 170 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI-------------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSR 170 (536)
T ss_pred hhhhhccchhHHHHHhhhhh-------------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHH
Confidence 45889999999999875211 2456 77888888899999999998888777776522 111234555
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 632 LMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSAL 671 (680)
Q Consensus 632 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~ 671 (680)
-+.+-...|...+|.+-++..++ ++|.....+....++
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~--LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLA--LEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHh--hCcccHHHHHHHHHh
Confidence 55555666888888888888877 467655444444433
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.50 E-value=26 Score=31.19 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=69.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH--HHHHHHhcCCH
Q 005729 346 VKMGYLKDAEFVVSEMERSGVLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF-IYSR--ILAGYRDRGEW 421 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~--ll~~~~~~g~~ 421 (680)
.+.+..++|+.-|..+.+.|...-+. ..-.+.......|+...|...|+++-.....|-.. -... -...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566677777777777665432111 11223344566777777777777776544333322 1111 12234566667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 005729 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS 468 (680)
Q Consensus 422 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 468 (680)
+......+.+-..+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 76666666655544344444455565666677777777777776664
No 301
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.10 E-value=7.3 Score=30.74 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 609 EAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 609 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
++.+-++.+....+.|++.+..+.++||.|.+++.-|.++++-...+ +..+...|..+.+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeik 87 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIK 87 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHh
Confidence 34444444555556666666666666666666666666666655533 2223445555555444
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.05 E-value=9 Score=34.81 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
+.|..-..++.+.+.++.|++-....++ +.|+. .....-..+|.+..++++|++-|+++++.
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4566667788889999999998888887 44532 23344456888889999999999999875
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.69 E-value=62 Score=34.83 Aligned_cols=189 Identities=11% Similarity=0.075 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (680)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 518 (680)
+..+|..-+.--.+.|+.+.+...|++..-. +..-...|--.+.-....|+.+-|..++....+--++ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 4567777777778888888888888877631 1112233444444444558888887777666554322 2222222222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH--HHH
Q 005729 519 L-LGEQERWEDVKRLLGNMRAQGLLPNV-VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN--LAL 594 (680)
Q Consensus 519 ~-~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 594 (680)
. +-..|+++.|..+++.+... . |+. ..-..-+....+.|..+.+.... +++.........+.. ..+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~--------~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKN--------ELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHH--------HHHHHhcccccCcchhHHHH
Confidence 2 34567899999999888876 3 432 22223344455666666665210 011111111111111 111
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 595 NSLINA-FGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 595 ~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
....+. +.-.++.+.|..++.+|.+. ++++...|..+++.....+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 111111 12257888999999999885 5667778888887766555
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.68 E-value=14 Score=29.59 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 609 EAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 609 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
+..+-++.+....+.|++.+..+.+++|.|.+++.-|.++++-+..+ +.+....|..+++-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHh
Confidence 34444555555667777777777778888888888888777777654 3333336666666555
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.72 E-value=37 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 627 VTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 627 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
.||-.|..-+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45556666666677777777777666553
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.02 E-value=3.1 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 193 PLTYNALISACARNDDLEKALNLMSKMRQ 221 (680)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (680)
..+++.|...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999999765
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.49 E-value=21 Score=34.90 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 490 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
++++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++...|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666655544
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.09 E-value=63 Score=32.94 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
....+|..++..+.+.|+++.|...+.++...+... .......-.+.+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888888888999999998888887643111 234444456667778888888888887776
No 309
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.84 E-value=93 Score=34.75 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 005729 371 HTYSLLIDAYANA---GRWESARIVLKEMEV 398 (680)
Q Consensus 371 ~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 398 (680)
.-+..||..|++. .+..+|.++|-.+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3455666666653 455566666655543
No 310
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.68 E-value=57 Score=32.24 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNS-LINAFGEDQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p 624 (680)
..+.....-||+-|+.+.|.+.+. +.+++-...|.+.|...+.. +.-.|..+.-+.+-++..+.+.+.|-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~-------~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALR-------KTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH-------HHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh
Confidence 455566677888888888777765 33444455566667664432 3333444444555566666666666554
Q ss_pred CH----HHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 625 DV----VTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 625 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
+. .+|..+- +....++++|..++-+.+
T Consensus 178 eRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 178 ERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 33 2333332 234456777777776655
No 311
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.15 E-value=27 Score=28.20 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (680)
.....++|..+..|+...+. ....+.-+.+..+...|++.+|+.. .....||...|-+|-. .+.|-.+++...+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34467899999999999883 3445556667888999999999777 6677889999988765 68899999999999
Q ss_pred HHHHcC
Q 005729 218 KMRQDG 223 (680)
Q Consensus 218 ~m~~~g 223 (680)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 888776
No 312
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.14 E-value=63 Score=33.84 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=71.9
Q ss_pred HHHhcCCHHHHHHHHHHHH---HCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 005729 519 LLGEQERWEDVKRLLGNMR---AQGLLPNV-----VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS 590 (680)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~---~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~ 590 (680)
.+.-.|++.+|.+++...- +.|...+. ..+|.|.-...+.|.+.-+..+|. +|++-+..-...|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~----kAL~N~c~qL~~g~~~~ 324 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL----KALRNSCSQLRNGLKPA 324 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH----HHHHHHHHHHhccCCCC
Confidence 3455678888877765432 11322221 123455555556666666666654 44443444444566554
Q ss_pred H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 591 N-----------LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (680)
Q Consensus 591 ~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 639 (680)
. .+||+= -.|...|+.-.|.+.|.+..+. +.-++..|..|..+|...
T Consensus 325 ~~~tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 325 KTFTLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cceehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2 345543 3567899999999999998864 567899999999998644
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.06 E-value=4.6 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (680)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999875
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.53 E-value=1e+02 Score=34.40 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=66.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 348 (680)
|..+.+.+.+++|+++.+..... .| -...+..+|..+.-.|++++|-...-.|... +..-|-..+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55667788888888887765432 33 2345777888888889999988888888754 556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382 (680)
Q Consensus 349 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 382 (680)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 65544332 22322223455667776666665
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.38 E-value=1e+02 Score=34.39 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=43.4
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CC----CCHHHHHHHHH--HHHhcCCcCcHHHHHH--------HHHHcCCCCCHHHHH
Q 005729 602 GEDQRDAEAFAVLQYMKENG--LK----PDVVTYTTLMK--ALIRVDKFHKVPAVYE--------EMILSGCTPDRKARA 665 (680)
Q Consensus 602 ~~~g~~~~A~~~~~~m~~~g--~~----p~~~~~~~l~~--~~~~~g~~~~A~~~~~--------~m~~~g~~pd~~~~~ 665 (680)
+-.+++..|...++.|.+.. .+ .....+..++. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 45789999999999998531 11 12223333333 3456699999999997 555555555555555
Q ss_pred HHHHH
Q 005729 666 MLRSA 670 (680)
Q Consensus 666 ~l~~a 670 (680)
.+-.+
T Consensus 452 ~LNl~ 456 (608)
T PF10345_consen 452 ALNLA 456 (608)
T ss_pred HHHHH
Confidence 44333
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.22 E-value=28 Score=27.76 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMR 220 (680)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (680)
..++|..+-.|+...+. ....+.-+-+..+...|++.+|..+ ...+-||...|-+|-. .+.|..+++...+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45788899999988762 2344555567888999999999998 5567889999988765 57788888888888888
Q ss_pred HcCCCCChhhH
Q 005729 221 QDGYHCDFINY 231 (680)
Q Consensus 221 ~~g~~p~~~~~ 231 (680)
..| .|....|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 876 3444333
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.52 E-value=4.8 Score=25.77 Aligned_cols=28 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888877764
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.10 E-value=2.8 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCChHHH
Q 005729 545 VVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A 564 (680)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333333333333333333
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.83 E-value=48 Score=35.67 Aligned_cols=150 Identities=17% Similarity=0.087 Sum_probs=88.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF 356 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 356 (680)
-.|+++.|..++..+. ....+.+++.+.+.|..++|+++- ..||. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHH
Confidence 3466666655443332 233455666666777666665542 12221 1233456677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436 (680)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 436 (680)
+..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-...++.|
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g- 722 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG- 722 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-
Confidence 665543 556677788888888888888777766543 4456666667777666666666666665
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (680)
..| ...-+|...|+++++.+++..-
T Consensus 723 ~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 222 2233455667777777766544
No 320
>PRK10941 hypothetical protein; Provisional
Probab=78.72 E-value=24 Score=34.39 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSAL 671 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~ 671 (680)
..+.+-.+|.+.++++.|+++.+.+.. +.| |+.-+.--.-.|.+.|.+..|..-++..+++ .|+......+..-+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhHHHHHHHH
Confidence 456778889999999999999999998 556 5666777888899999999999999999875 45555544444444
Q ss_pred HHHH
Q 005729 672 RYMK 675 (680)
Q Consensus 672 ~~~k 675 (680)
..++
T Consensus 259 ~~l~ 262 (269)
T PRK10941 259 HSIE 262 (269)
T ss_pred HHHh
Confidence 4443
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.72 E-value=68 Score=31.28 Aligned_cols=72 Identities=18% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHH-----HcCCCCCHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMI-----LSGCTPDRKARA 665 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~~~ 665 (680)
+++.....|..+|.+.+|.++.++.+... +.+...|..|+..|...|+--.|.+.|+++. +.|+..|..+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 35556678889999999999999988842 3377788889999999999888888888886 347777766544
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.71 E-value=34 Score=33.55 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESG---LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEH 371 (680)
Q Consensus 295 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 371 (680)
|......+...++..-....+++.++..+-++.... ..++...+ ..++.+.+ -+.++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 333444444555555555566666666665554321 11221111 12222222 24556666666666677777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 372 TYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
+++.+++.+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777666665544
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.55 E-value=9.5 Score=37.59 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
.-|.+.|.+++|+..|....... +-+.+++..-..+|.+..++..|..=.+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555555444332 1145555555555555555555544444443
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.05 E-value=98 Score=32.76 Aligned_cols=182 Identities=12% Similarity=0.130 Sum_probs=116.7
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005729 261 IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNA 340 (680)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 340 (680)
-..|....-+++..+....+..-...+..+|...| -+...|..++.+|..+ .-++-..+++++.+..+. |++.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 35566677778888887777777777888887754 4667788888888888 556677888888776542 4444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLP-----DEHTYSLLIDAYANAGRWESARIVLKEMEVS-HAKPNSFIYSRILAG 414 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~ 414 (680)
|...|-+ ++.+.+...|.++...=++. -...|.-|...- ..+.+..+.+...+... |...-.+.+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444444 77778877777776532221 123455544322 34666677776666543 334445566666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF 450 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 450 (680)
|....++++|++++..+.++. .-|...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 788888888888888777665 44555544454443
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.77 E-value=6.7 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (680)
..|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999998875
No 326
>PRK09687 putative lyase; Provisional
Probab=77.64 E-value=76 Score=31.29 Aligned_cols=235 Identities=10% Similarity=0.029 Sum_probs=132.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHH
Q 005729 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL----KDAEFVVSEMERSGVLPDEHT 372 (680)
Q Consensus 297 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~ 372 (680)
.+|.......+..+...|. +++...+..+.. .+|...-...+.++++.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3455555556666665554 233333333433 23555555566666666652 4566666665333 345555
Q ss_pred HHHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 373 YSLLIDAYANAGRW-----ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447 (680)
Q Consensus 373 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 447 (680)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 55555555544321 223333333322 2355555666677766665 445666655554 34555666666
Q ss_pred HHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 448 DTFGKYN-CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 448 ~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
.++++.+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 6666653 23455555555554 4566777777888888877 456666666665542 234667778888874
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 527 EDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (680)
Q Consensus 527 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (680)
+|...+..+.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777763 346666665555553
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.50 E-value=23 Score=32.47 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 005729 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ---GLLPNVVTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (680)
+.|.+.|-.+...+..-++.....+.. |....+.+++.+++.+..+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666665554434333333333 33355666666666666553 22556777777777777777766653
No 328
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.34 E-value=70 Score=30.69 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=88.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQER------------GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVV 546 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~------------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~ 546 (680)
-|...|...|.+.+..++++++... | .--...|..-|..|....+-.+...++++.+.. .-.|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG-tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG-TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc-chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4555566666666666666666432 1 111345666677777777777777777776543 2234444
Q ss_pred HHHHHHHH-----HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 547 TYTTLVDI-----YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL---ALNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 547 ~~~~li~~-----~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
.... |+- ..+.|++++|..-|- +.|+..-+.|. |... -|..|.+.+.+.|= .-|+.-.
T Consensus 229 ImGv-IRECGGKMHlreg~fe~AhTDFF-------EAFKNYDEsGs-pRRttCLKYLVLANMLmkS~i-----NPFDsQE 294 (440)
T KOG1464|consen 229 IMGV-IRECGGKMHLREGEFEKAHTDFF-------EAFKNYDESGS-PRRTTCLKYLVLANMLMKSGI-----NPFDSQE 294 (440)
T ss_pred HHhH-HHHcCCccccccchHHHHHhHHH-------HHHhcccccCC-cchhHHHHHHHHHHHHHHcCC-----CCCcccc
Confidence 4433 333 345666766654221 22333333342 3332 34555555554431 0111111
Q ss_pred HCCC--CCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 619 ENGL--KPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 619 ~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
...+ .|.......|+.+|.+. +..+-.++++. .+..+-.|+.++..+..-++.+
T Consensus 295 AKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~-~~~~IM~DpFIReh~EdLl~ni 350 (440)
T KOG1464|consen 295 AKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKS-NRSNIMDDPFIREHIEDLLRNI 350 (440)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHh-hhccccccHHHHHHHHHHHHHH
Confidence 1112 23334566677777543 33333333322 2345677777776666655543
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.50 E-value=4.3 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777765
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.31 E-value=3.4 Score=27.40 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 631 TLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 631 ~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35666777777777777777776543
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.07 E-value=19 Score=33.39 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDI 554 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 554 (680)
+..+..+.+.+.+.+|+...++-++.. +.|..+-..+++.+|-.|+|++|..-++-.-+. ...+...+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344555666777777777776666554 455566666777777777777777666655443 122334555555543
No 332
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=78 Score=30.76 Aligned_cols=28 Identities=0% Similarity=-0.078 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 510 TTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 510 ~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
...+..+..-|++.++.+.+.+.+.+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3445555555555555555555554443
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.96 E-value=1.3e+02 Score=32.56 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 005729 403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE--PDTITWNT 480 (680)
Q Consensus 403 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ 480 (680)
++..+|+..+..-.+.|+.+.+.-+|+...-. +..-...|-..+......|+.+.|..++....+..++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34568888888889999999999999886532 1223344555555555568888888888776654433 33333333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKR---LLGNMRAQGLLPNVVTYTTLVDIYG 556 (680)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~---~~~~m~~~~~~p~~~~~~~li~~~~ 556 (680)
.+. -..|+++.|..+++...+.- |+. ..-..-+....+.|..+.+.. ++..... | .-+..+...+.--+.
T Consensus 374 ~f~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFE--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFA 447 (577)
T ss_pred HHH--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHH
Confidence 332 23679999999999998763 443 233333455667788777773 3333222 1 112222222222222
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQ 605 (680)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 605 (680)
+. ...+++..+.|..++.++.+. ..++...|..+++.+...+
T Consensus 448 r~------~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RL------RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HH------HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 21 011113333444445555542 3455567778877776555
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.85 E-value=26 Score=27.77 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 388 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
++.+-++.+...+..|+.....+.+++|.+.+++..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555544
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.07 E-value=44 Score=26.83 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ 292 (680)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (680)
.++-+..+....+-|+..+..+.+.+|.+.+++..|+++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555555555666666666666666666665554
No 336
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=73.94 E-value=1.2e+02 Score=31.59 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ 557 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 557 (680)
..|+.-|.-.|++.+|..+.+++--- +......+.+++.+..+.|+-.....+++...+.|+ .|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45777788889999998888776321 123456778888888888887777777777766654 344455555543
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.83 E-value=64 Score=28.52 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=51.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 451 GKYNCLHHAMAAFDRMLSEGIEPDT---ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (680)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 527 (680)
.+.++.+++..++..+.-.. |.. .++.. ..+...|++.+|..+|+++.+.. |....-..|+..|....+-.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 45667777777777776542 332 23332 23456788888888888876653 33333344444444333222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005729 528 DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFD 562 (680)
Q Consensus 528 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 562 (680)
.=...-.++.+.+-.|+. ..++..+....+..
T Consensus 95 ~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~ 126 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDA---RALVRALLARADLE 126 (160)
T ss_pred HHHHHHHHHHhcCCChHH---HHHHHHHHHhcccc
Confidence 222223344444433332 23444444444333
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.53 E-value=45 Score=35.84 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=44.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531 (680)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 531 (680)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+..+ |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555554443331 344455555555555555555555554433 2233444444444444433
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 532 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
+-....+.|.. |....+|...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 33333333321 122233444555555555543
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.53 E-value=32 Score=31.60 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=52.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCcCcHH
Q 005729 575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN---GLKPDVVTYTTLMKALIRVDKFHKVP 646 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 646 (680)
|++.|-.+...+.--+....-.|...| -..+.++++.++.+..+. +-.+|+..+.+|++.+.+.|+++.|-
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445566666665554555555555544 478899999999988862 33678999999999999999998874
No 340
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.26 E-value=66 Score=29.41 Aligned_cols=87 Identities=14% Similarity=0.026 Sum_probs=39.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYA-----AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
..+..+|++++|..-++..... |....+. -|.+.....|.+++|+.+++.....+. .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3455566666666666655432 2222222 223444455555555555554443322 11112222344455
Q ss_pred cCCHHHHHHHHHHHHHC
Q 005729 348 MGYLKDAEFVVSEMERS 364 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~ 364 (680)
.|+-++|..-|....+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555444
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=1.8e+02 Score=33.54 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (680)
-|..|+--|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3888999999999999999999998763
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.36 E-value=14 Score=25.69 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 632 LMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 632 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
+.-++.+.|++++|.++.+.+++ +.|+..-...|...+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHHH
Confidence 44455666666666666666666 3666665555555554
No 343
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.82 E-value=39 Score=28.74 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 588 KPSNLALNSLINAFGEDQ---RDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 588 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
.++..+--.+.+++.+.. +.++.+.+++...+.. .| .......|.-++.+.++++++..+.+.+++ .+||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 566666677888888765 4566788888888622 33 233444566778999999999999999998 488887
Q ss_pred HHHHHHHHHH
Q 005729 663 ARAMLRSALR 672 (680)
Q Consensus 663 ~~~~l~~a~~ 672 (680)
-...|.+.++
T Consensus 106 Qa~~Lk~~ie 115 (149)
T KOG3364|consen 106 QALELKETIE 115 (149)
T ss_pred HHHHHHHHHH
Confidence 7777777666
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.16 E-value=1.1e+02 Score=29.73 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=63.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCCHHHHHH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTAT-------YAAVITALSNSGRTIEAEAVFEE----LKESGLKPRTKAYNA 340 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-------~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~~~~~ 340 (680)
.+...+.+++++|+..+.++...|+..|..+ ...+...|...|+...--+.... |.+..-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445677888899998888888887766544 34566677777776554444332 222111122333444
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 341 LLKGYVKM-GYLKDAEFVVSEMERSGVLPD-----EHTYSLLIDAYANAGRWESARIVLK 394 (680)
Q Consensus 341 li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 394 (680)
|+..+-.. ..++.-..+.....+...+-+ ...-.-++..+.+.|.+.+|+.+..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44444332 224444444433332111101 1112345666667777776665543
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.15 E-value=6.5 Score=22.44 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMS 217 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~ 217 (680)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44567778888888888888775
No 346
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.05 E-value=1.8e+02 Score=32.16 Aligned_cols=27 Identities=11% Similarity=0.168 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 192 TPLTYNALISACARNDDLEKALNLMSKM 219 (680)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (680)
++.-|+ .+..++-.|+++.|.++++..
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 367777 677788888888888887544
No 347
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.78 E-value=1.2e+02 Score=29.97 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=93.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005729 490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGE----QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 490 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (680)
+..+|.++|..+.+.|. ......|...|.. ..+..+|..++.++.+.|..+-......+...|..-. ...+.
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc
Confidence 35666666666655552 2222223333333 3367777777777777765433233444444444432 11111
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 005729 566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD- 640 (680)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g- 640 (680)
. .....|...|.++...+ +......+...|.. ..+.++|..+|+..-+.|- ......+. .+...|
T Consensus 168 ~---~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 168 A---YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGE 237 (292)
T ss_pred c---HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCC
Confidence 1 11235666677776665 44444455555533 4488999999999999774 33333333 555555
Q ss_pred --------------CcCcHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 641 --------------KFHKVPAVYEEMILSGCTPDRKARAML 667 (680)
Q Consensus 641 --------------~~~~A~~~~~~m~~~g~~pd~~~~~~l 667 (680)
+...|...+......|........+.+
T Consensus 238 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 238 GVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred CchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 677788888888888877766666533
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.26 E-value=1.6 Score=37.99 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
.+.+.+..+....+++.+...+...+....+.++..|++.++.++..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 3334444444444555555443333445555555555555444444443
No 349
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.64 E-value=1.3 Score=38.68 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=19.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005729 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVL 393 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 393 (680)
.+.+..+....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333444444444444443333333444444444444444444444433
No 350
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.42 E-value=89 Score=27.62 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=5.4
Q ss_pred cCCHHHHHHHHHHH
Q 005729 348 MGYLKDAEFVVSEM 361 (680)
Q Consensus 348 ~g~~~~A~~~~~~m 361 (680)
.|++.+|..+|+++
T Consensus 57 r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 57 RGDWDDALRLLREL 70 (160)
T ss_pred hCCHHHHHHHHHHH
Confidence 33333333333333
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.09 E-value=24 Score=26.79 Aligned_cols=21 Identities=33% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAV 613 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~ 613 (680)
++..|+.+|+..|++.+++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666554
No 352
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.03 E-value=1.1e+02 Score=28.53 Aligned_cols=179 Identities=13% Similarity=0.040 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005729 419 GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF 498 (680)
Q Consensus 419 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 498 (680)
|-+.-|.--|.+..... +.-+.+||.|.--+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+=|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHH
Confidence 33444444444433321 2335677777777788888888888888888765333333333333333 367888888777
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHhhhHHHH
Q 005729 499 EEMQERGY-FPCTTTYNIMINLLGEQERWEDVKRLL-GNMRAQGLLPNVVTYTTLV-DIYGQSGRFDDAIECLEGLSDQA 575 (680)
Q Consensus 499 ~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~a 575 (680)
...-+.+. .|-...|.-+.. +.-+..+|..-+ ++..+ .|..-|...| ..|.-.=..+.+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l----------- 218 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETL----------- 218 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHH-----------
Confidence 76665541 222233333322 233445554333 22322 2333343333 222211111111
Q ss_pred HHHHHHHHHCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 576 VNAFRVMRTDGLKP-------SNLALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 576 ~~~~~~m~~~g~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (680)
|+.+... -.- -..||--|..-+...|+.++|..+|+-.+..+
T Consensus 219 ---~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 ---MERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ---HHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111111 010 12477788888899999999999999888643
No 353
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.80 E-value=1.3e+02 Score=31.54 Aligned_cols=138 Identities=15% Similarity=0.087 Sum_probs=60.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHH
Q 005729 202 ACARNDDLEKALNLMSKMRQDGYHCDFIN--YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ--LLNDVIVGFAK 277 (680)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~--~~~~li~~~~~ 277 (680)
..++.|+.+-+..+ .+.|..|+... ..+.+...+..|.. .+.+.+.+.|..++.. .....+...+.
T Consensus 8 ~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~------~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 8 DAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDS------EAIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCH------HHHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 34455665444333 34455554432 22334444555553 3444555555544322 11234455566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHH
Q 005729 278 AGDASKAMRFLGMAQGVGLSPKTA---TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKA--YNALLKGYVKMGYLK 352 (680)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~ 352 (680)
.|+.+....+++. |...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 6776655444432 2111100 011233344455554 34444555555443321 122344445566655
Q ss_pred HHHHH
Q 005729 353 DAEFV 357 (680)
Q Consensus 353 ~A~~~ 357 (680)
-+..+
T Consensus 150 ~v~~L 154 (413)
T PHA02875 150 GIELL 154 (413)
T ss_pred HHHHH
Confidence 44333
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.29 E-value=10 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005729 196 YNALISACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (680)
+-.+...+.+.|++++|++.|+++...
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677888999999999999998875
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.19 E-value=74 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
-..++.+.+.++.|+.-..+.++.+.. .......-..+|-+...+++|+.-|+++.+.
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 334445555555555555555544311 1222222234555555666666666665554
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.88 E-value=1.2e+02 Score=28.55 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCC
Q 005729 593 ALNSLINAFGEDQRDA-------EAFAVLQYMKENGLKP----DV-VTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~-------~A~~~~~~m~~~g~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 660 (680)
.+..+.+.|...|+.+ .|.+.|.+..+..-.| +. .+...+.....+.|++++|.+++.+++..+-...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 5677788888888844 4566666655432222 22 3344566677899999999999999998765554
No 357
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.88 E-value=17 Score=21.96 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (680)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36888899999999999999999998764
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.31 E-value=35 Score=25.92 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 522 EQERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
..++.++|...|...++.-..+. ..++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999988887633332 4577888899999999998887643
No 359
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.28 E-value=2.8e+02 Score=32.17 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=37.9
Q ss_pred HHHHHHHhcccCCHHHHHHhhC-CCCCCHHH-----HHHHHH---HHHHcCCHHHHHHHHHHHHHc
Q 005729 166 YSILIHALGRSEKLYEAFLLSQ-RQRLTPLT-----YNALIS---ACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~-----~~~li~---~~~~~g~~~~A~~~~~~m~~~ 222 (680)
+..=+..|....++.+|..+.+ ...+++.. +..+.. -+..+|++++|++.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 5566777778888999988722 23344432 222222 256789999999999998754
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.78 E-value=50 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 617 MKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 617 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
.....+.|++.+...-++++.+.+++.-|.++++-+.
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334455555555555555555555555555555444
No 361
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=63.76 E-value=1.7e+02 Score=29.63 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=30.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (680)
+.+..+.|+++.-.+........ .++...|.++... +.|+++++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566778887755554444322 2344444444443 67777777777766654
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.16 E-value=1.7e+02 Score=29.46 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 005729 491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ---SGRFDDAIEC 567 (680)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 567 (680)
.+.-+.++++.++.. +-+...+..++..+.+..+.++..+.++++.... .-+...|...++.... .-.+++..++
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 355667777777764 5667777788888888888888888888888763 2267777777766544 2345566655
Q ss_pred HhhhHHHHHHHHHHHHHCC-----CCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 568 LEGLSDQAVNAFRVMRTDG-----LKPSN-----LALNSLINAFGEDQRDAEAFAVLQYMKENGL 622 (680)
Q Consensus 568 ~~~~~~~a~~~~~~m~~~g-----~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 622 (680)
|. +++..+....... -.++. ..+..+...+...|..+.|+.+++-+.+.++
T Consensus 125 y~----~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YE----KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HH----HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 54 3333333333221 01111 1233444445678999999999999998654
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.34 E-value=53 Score=30.54 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM 361 (680)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 361 (680)
..++.+.+.+++.+++.+.++-.+.. +.|..+-..+++.||-.|++++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444445555555555554444332 223344444555555555555555444443
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.02 E-value=2.9e+02 Score=31.64 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=119.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 005729 380 YANAGRWESARIVLKEMEVSHAKPNSF-------IYSRILA-GYRDRGEWQRTFQVLKEMKSS----GVEPDTHFYNVMI 447 (680)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~ll~-~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~li 447 (680)
.....++++|..+..++...-..|+.. .++.+-. .....|+.++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788999999988876543332221 2333322 224568889999888876543 2345567777788
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHH--HHHHHHcCC--hhHHHHHHHHHHHC---CCC---CCHHHHH
Q 005729 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTIT---WNTL--IDCHFKCGR--YDRAEELFEEMQER---GYF---PCTTTYN 514 (680)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~A~~~~~~m~~~---~~~---p~~~t~~ 514 (680)
.+..-.|++++|..+.....+..-.-++.. |..+ ...+...|+ ..+....|...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988776654321223333 3322 223445663 23333333333221 001 1123444
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 005729 515 IMINLLGEQ-ERWEDVKRLLGNMRAQGLLPNVV--TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591 (680)
Q Consensus 515 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~ 591 (680)
.+..++.+. +...++..-+.-.......|-.. .+..|+..+...|++++|...++. +..-|...+..++-
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~-------~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDE-------LERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHhcCCCCCchH
Confidence 444444441 11222222222222222222222 223677888889999999877652 22233333333333
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHH
Q 005729 592 LALNSLINAF--GEDQRDAEAFAVLQY 616 (680)
Q Consensus 592 ~~~~~li~~~--~~~g~~~~A~~~~~~ 616 (680)
.+-...+... ...|+..++.....+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3333333332 356888887776655
No 365
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.91 E-value=1.5e+02 Score=30.42 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=30.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEG--IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
.+.-+.+-|..+|+++.|.+.|.+...-- .+-.+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34445555666666666666666644310 011223344444444445556555555555543
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.36 E-value=1.7e+02 Score=28.71 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
+++.....|..+|.+.+|.++.++.+..+ +.+...+-.++..++..|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44555667778888888888888877765 6667777788888888887666665555553
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.06 E-value=19 Score=23.84 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=11.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 005729 376 LIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.64 E-value=14 Score=26.68 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 607 DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 607 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
+++..++++.++. ...|..-...++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444443 223444455666777777777777777776654
No 369
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.48 E-value=14 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 005729 597 LINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 597 li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44555566666666666666654
No 370
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.28 E-value=2.7e+02 Score=30.69 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 372 TYSLLIDAYANAG-----RWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQRTFQVLKEMKSSGVEPDTHFYNV 445 (680)
Q Consensus 372 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 445 (680)
...-+..+|.+.. +.+.|..++.+.-..|. |+...+...+..... ..+...|.++|....+.|. +....+..
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la 367 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLA 367 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHH
Confidence 3344444454432 44556666666655542 233322222222222 2356677777777776662 22222222
Q ss_pred HHHHHH--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 446 MIDTFG--KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 446 li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
++-... -..+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 222211 3346777777777777766 2222222222233333 66666666666666555
No 371
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.91 E-value=78 Score=29.95 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=60.3
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCcHHHHHHHHH----HcCCCCC
Q 005729 587 LKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV-TYTTLMKALIRVDKFHKVPAVYEEMI----LSGCTPD 660 (680)
Q Consensus 587 ~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~pd 660 (680)
+.|+.. -|..-+-++.+..+++.+..--++.++ +.||.+ ....+..++.....+++|+..+.+.. ++.+.+.
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~ 116 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFG 116 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCc
Confidence 678885 456677788889999999888888877 678765 34445667788888999999988874 3455666
Q ss_pred HHHHHHHHHHH
Q 005729 661 RKARAMLRSAL 671 (680)
Q Consensus 661 ~~~~~~l~~a~ 671 (680)
...+..|..|-
T Consensus 117 ~di~~~L~~ak 127 (284)
T KOG4642|consen 117 DDIPKALRDAK 127 (284)
T ss_pred chHHHHHHHHH
Confidence 66666666553
No 372
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=3.2e+02 Score=31.35 Aligned_cols=130 Identities=13% Similarity=0.065 Sum_probs=77.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (680)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (680)
.+..+|+++.|++....+ -|..+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 345678888888876654 3677889999999999999999888887664 3334445666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (680)
Q Consensus 354 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 433 (680)
-.++.+-.+.++ |..+.. +.. .-.|+.++-.++++.-... +. .|. .-...|.-++|.++.++...
T Consensus 717 L~Km~~iae~r~---D~~~~~-qna--lYl~dv~ervkIl~n~g~~----~l-ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 717 LSKMMKIAEIRN---DATGQF-QNA--LYLGDVKERVKILENGGQL----PL-AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHHhhh---hhHHHH-HHH--HHhccHHHHHHHHHhcCcc----cH-HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 666665554331 322211 111 1246666666665543211 11 111 11335666677777776654
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.67 E-value=18 Score=20.52 Aligned_cols=27 Identities=30% Similarity=0.155 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+|..+...+...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456667777777888888887777765
No 374
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=59.58 E-value=89 Score=31.40 Aligned_cols=66 Identities=30% Similarity=0.422 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 607 DAEAFAVLQYMKENGLKPDV----VTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 607 ~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
.+++..+++.+++. .|+. ..|.++++...+.|.++.++.+|++.+..|-.|=.+.+..+...+...
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k 188 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMK 188 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 45666777777762 4554 467788888889999999999999999999999888888888888743
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.17 E-value=78 Score=25.94 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388899999999999999999988876
No 376
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.82 E-value=3.5e+02 Score=32.06 Aligned_cols=179 Identities=17% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC---cC--HHHHHHHHHH
Q 005729 200 ISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE---LD--GQLLNDVIVG 274 (680)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~---~~--~~~~~~li~~ 274 (680)
..+|...|...+|++.|.+.... +.-..+....+....-+... +..|-. +. ...|...++.
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg-~ge~~aL~~lv~~~~p~~~s-------------v~dG~t~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSG-FGEGNALRKLVYFLLPKRFS-------------VADGKTPSEELTALHYYLKVVRL 992 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhc-cccHHHHHHHHHHhcCCCCc-------------hhcCCCCCchHHHHHHHHHHHHH
Confidence 34577889999999999998753 22222221111111110000 011211 12 3456777888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLS---PK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 350 (680)
+-+-+-.+.+.++-...++. ++ |. ..+++.+.+-....|.+.+|...+-.-... .........++-.++.+|.
T Consensus 993 le~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~ 1069 (1480)
T KOG4521|consen 993 LEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGE 1069 (1480)
T ss_pred HHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccc
Confidence 88888888888887766653 22 22 335777788888888887776655332211 1122345667777777776
Q ss_pred HHH------------HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005729 351 LKD------------AEF-VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKE 395 (680)
Q Consensus 351 ~~~------------A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (680)
++. ... +++...+.........|+.|-..+...+++.+|-.++-+
T Consensus 1070 l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1070 LEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred hHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 543 333 333333333333445677777777888888877655443
No 377
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.65 E-value=1.3e+02 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 348 MGYLKDAEFVVSEMERSGVLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
.++.+++..+++.|.-. .|+.. .-..-.-.+...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443 12211 1111222344556666666666665543
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.24 E-value=1.4e+02 Score=29.10 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 005729 307 ITALSNSGRTIEAEAVFEELKES--GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN-- 382 (680)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 382 (680)
|.+++..|++.+++...-+--+. .++|. +...-|-.|.|.+....+.++-......--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55566666665554433332221 12222 2223333455555555555555554432111122335444444433
Q ss_pred ---cCCHHHHHHHH
Q 005729 383 ---AGRWESARIVL 393 (680)
Q Consensus 383 ---~g~~~~A~~~~ 393 (680)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555554443
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.76 E-value=1.3e+02 Score=26.08 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=65.1
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHhcCC-cCcHHHHHHHH
Q 005729 581 VMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENG---L--KPDVVTYTTLMKALIRVDK-FHKVPAVYEEM 652 (680)
Q Consensus 581 ~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m 652 (680)
.|++.+..++.. ..|+++.-....+++.-.+.+++.+.... + .-+...|..++.+..+..- .--+..+++-|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 345455555554 56888887788888888888888875310 0 2245678888888866654 34567778888
Q ss_pred HHcCCCCCHHHHHHHHHHHH
Q 005729 653 ILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 653 ~~~g~~pd~~~~~~l~~a~~ 672 (680)
.+.+.++....+..+..++.
T Consensus 107 k~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHH
Confidence 88888999988888877765
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.27 E-value=2.6e+02 Score=29.27 Aligned_cols=17 Identities=6% Similarity=0.333 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHCCCC
Q 005729 572 SDQAVNAFRVMRTDGLK 588 (680)
Q Consensus 572 ~~~a~~~~~~m~~~g~~ 588 (680)
.++..+-...|....+.
T Consensus 296 ~~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 296 FEKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 34444556677765443
No 381
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.55 E-value=2.1e+02 Score=27.94 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH----HHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEM----QERGYFPCTTTYNIMI-NLLGEQERWEDVKRLLGNMRAQ----GLLPNVVTYT 549 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~ 549 (680)
.-+|..+.+.|.+.+|+.+.+.+ .+.+-+|+..+...+= .+|-...++.++..-+...... -.+|....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 34678888999999998876544 4444456655544332 3444455555544444333221 1233333333
Q ss_pred HHHHHHHh--cCChHHHHHHH
Q 005729 550 TLVDIYGQ--SGRFDDAIECL 568 (680)
Q Consensus 550 ~li~~~~~--~g~~~~A~~~~ 568 (680)
-|+.+... ..++.-|..+|
T Consensus 209 DL~sGIlhcdd~dyktA~SYF 229 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYF 229 (421)
T ss_pred HHhccceeeccccchhHHHHH
Confidence 34444333 33455555443
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.80 E-value=42 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=18.3
Q ss_pred HhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Q 005729 637 IRVDKFHKVPAVYEEMILSGCTPDRKARAMLR 668 (680)
Q Consensus 637 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 668 (680)
.+.|-.+++..++++|.+.|+..+...+..+.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666666655555443
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.65 E-value=1.6e+02 Score=28.62 Aligned_cols=57 Identities=11% Similarity=-0.025 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
|.+++..+++.++....-+--+.--+........-|-.|.+.+....+.++-.....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555554433332211111223333334445555555555555554443
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.13 E-value=6.3e+02 Score=32.78 Aligned_cols=61 Identities=13% Similarity=-0.077 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
.+|-.......+.|.++.|...+-.+.+.+ -+..+.-.+..+...|+-..|..++++.++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 489999999999999999999877777654 3455666777889999999999999999865
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=2.6e+02 Score=27.93 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH-HHHhcCCcCcHHHHHHHHHHcCCCCCHHHH
Q 005729 592 LALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKPDVVTYTTLMK-ALIRVDKFHKVPAVYEEMILSGCTPDRKAR 664 (680)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 664 (680)
..+.....-||+-|+.+.|++.++.-.+ .|.+.|...+..-+. -|....-..+-++-.+.+++.|..-+..-+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 4677788889999999999998877654 577777766554333 344444456677777888888887776543
No 386
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.91 E-value=22 Score=32.58 Aligned_cols=8 Identities=63% Similarity=1.107 Sum_probs=5.0
Q ss_pred cCCCCCCC
Q 005729 3 LLPPQPLS 10 (680)
Q Consensus 3 ~~~~~~~~ 10 (680)
|+||||.-
T Consensus 186 llPPPpgg 193 (253)
T KOG2500|consen 186 LLPPPPGG 193 (253)
T ss_pred ccCCCCCC
Confidence 56666655
No 387
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.57 E-value=1.7e+02 Score=25.45 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 338 YNALLKGYVKMGYLKDAEFVVSEM 361 (680)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~m 361 (680)
.|.++......+++.....+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 355555555555555555555555
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.06 E-value=59 Score=21.95 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 005729 201 SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ 236 (680)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 236 (680)
-...+.|-..++..++++|.+.|+..+...|..+++
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344567777888888888888888877777766653
No 389
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=49.00 E-value=4.6e+02 Score=29.99 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 005729 199 LISACARNDDLEKALNLMSKMRQD 222 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~ 222 (680)
++-.+.|+|+.+.|.+..++-...
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~~~~ 354 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNENKDF 354 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhh
Confidence 555678999999999999987764
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.82 E-value=1.3e+02 Score=32.48 Aligned_cols=104 Identities=12% Similarity=-0.021 Sum_probs=58.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005729 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR 390 (680)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 390 (680)
...|+...|...+.........-..+....|.+...+.|...+|-.++.+..... ...+.++..+.++|....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3456666666666655433211122333445555666666667776666665543 234556666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 391 IVLKEMEVSHAKPNSFIYSRILAGYR 416 (680)
Q Consensus 391 ~~~~~m~~~~~~~~~~~~~~ll~~~~ 416 (680)
+.|++..+... .+..+-+.+...-|
T Consensus 697 ~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 77777665532 24444444444433
No 391
>PRK14700 recombination factor protein RarA; Provisional
Probab=48.65 E-value=2.8e+02 Score=27.46 Aligned_cols=124 Identities=20% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHH
Q 005729 191 LTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDF--INYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (680)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (680)
.+..+...++. ...||...|+..++.+.......+. .|. ..++++...-. .....+...+
T Consensus 65 i~~~al~~ia~--~a~GDaR~aLN~LE~a~~~~~~~~~~~it~---------------~~~~~~~~~~~-~~yDk~gd~H 126 (300)
T PRK14700 65 IDDGLYNAMHN--YNEGDCRKILNLLERMFLISTRGDEIYLNK---------------ELFDQAVGETS-RDFHREGKEF 126 (300)
T ss_pred cCHHHHHHHHH--hcCCHHHHHHHHHHHHHhhccccCCCccCH---------------HHHHHHHhHHH-hcccCCcchh
Confidence 34445555544 4578889999988886542100111 121 11112111110 1122233344
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 005729 269 NDVIVGFAKA---GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-----TIEAEAVFEELKESGLK 332 (680)
Q Consensus 269 ~~li~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~ 332 (680)
-.+|+++.|+ .+++.|+-++.+|++.|..|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 127 Yd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 127 YEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 4556666554 6888999999999999888887777777777766664 23445555555555553
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.22 E-value=44 Score=24.10 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 476 ITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
.-.-.+|.+|.+.|++++|.++.+++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344556666666777766666666543
No 393
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.08 E-value=38 Score=33.24 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 005729 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFIN 230 (680)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 230 (680)
..-||..|...++.||+++|+.++++..+.|+.--..+
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34588999999999999999999999999996543333
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.01 E-value=1.5e+02 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (680)
|..|+..|...|..++|++++..+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666665554
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=47.38 E-value=4.5e+02 Score=29.40 Aligned_cols=61 Identities=8% Similarity=-0.054 Sum_probs=28.1
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005729 267 LLNDVIVGFA-KAGDASKAMRFLGMAQGVGLSPKTA-----TYAAVITALSNSGRTIEAEAVFEELKE 328 (680)
Q Consensus 267 ~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (680)
++-.+...+. ...++++|...+++.....-.++.. .-..++..+.+.+... |...+++.++
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 3344444444 4456666666666543321112211 1223445555555544 6666655443
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.81 E-value=75 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 597 LINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633 (680)
Q Consensus 597 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 633 (680)
+.-++.+.|++++|.++.+.+.+ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45678899999999999999999 788754444433
No 397
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.44 E-value=2.5e+02 Score=26.50 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 005729 261 IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYA--AVITALSNSGRTIEAEAVFEELKE 328 (680)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~ 328 (680)
+.++..-+|.||--|.-...+.+|.+.|..- .|+.| |..+++ .-|......|++++|++....+-.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 3455555666666666665666666665432 23333 333333 345566777777777777666543
No 398
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.93 E-value=1.3e+02 Score=23.51 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=19.3
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWED 528 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 528 (680)
..|+.+.|.+++..+. +| ...|..++.++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhh
Confidence 3455566666666555 43 2345555555555554433
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.38 E-value=2.8e+02 Score=26.49 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 005729 375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQRTFQVLKEMK 432 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~l~~~m~ 432 (680)
.++..+-+.|+++++...++++...+...+..-.+.+-.+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3556666777777777777777777666666666666666622 344444555554443
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.15 E-value=3.1e+02 Score=26.96 Aligned_cols=63 Identities=5% Similarity=0.096 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEVS-HAKPNSFIYSRILAGYRDRGEWQRTFQVLK 429 (680)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 429 (680)
.++..+....+..+++.++|.+-.++++..... +...|...|..+|+...+.|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445555555556666666666655555554433 344455556666666666665554444443
No 401
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.71 E-value=3.2e+02 Score=26.89 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHCC
Q 005729 455 CLHHAMAAFDRMLSEG 470 (680)
Q Consensus 455 ~~~~A~~~~~~m~~~~ 470 (680)
+..+|...|....+.|
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5555666665555544
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.40 E-value=1e+02 Score=34.13 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=13.1
Q ss_pred cchhhHHHHhhcCCCccccccccC
Q 005729 82 YDFTPLLNFLSENSNSESASALAS 105 (680)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~ 105 (680)
+.|=+++..+--.|..++|..+..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555666666666666663
No 403
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.35 E-value=3.4e+02 Score=27.13 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 317 IEAEAVFEELKESGL----KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV 392 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (680)
.+|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+......++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 345555555544211 123333334444444445444433333333332 2444445555555555555555555
Q ss_pred HHHHHH
Q 005729 393 LKEMEV 398 (680)
Q Consensus 393 ~~~m~~ 398 (680)
++....
T Consensus 224 l~~~l~ 229 (324)
T PF11838_consen 224 LDLLLS 229 (324)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 555544
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.28 E-value=1.5e+02 Score=24.92 Aligned_cols=45 Identities=7% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
.+-++.+...++.|+......-+++|.+.+++..|.++|+-+..+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444455556666666666666666666666666666655543
No 405
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.95 E-value=2.8e+02 Score=27.54 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=53.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
+..+.+.+.+......+..+. ....-...+..+...|++..|+++..+..+.- -...-|+.+=..- .++
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~---~~L 173 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLS---SQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHh---HHH
Confidence 334444444444444444443 22333445666667777777777776654420 0000111111100 112
Q ss_pred HHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 527 EDVKRLLGNMRAQ-----GLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 527 ~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
++-.....++.+. -..-|+..|..+..+|.-.|+...+.+-
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222222222211 0134778899999999888887766543
No 406
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=42.99 E-value=23 Score=39.03 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.2
Q ss_pred CCCCCc
Q 005729 10 SVRFPA 15 (680)
Q Consensus 10 ~~~~~~ 15 (680)
||..|.
T Consensus 547 pPPlpg 552 (1102)
T KOG1924|consen 547 PPPLPG 552 (1102)
T ss_pred CCCCCC
Confidence 333333
No 407
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.99 E-value=4e+02 Score=27.58 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
.+..+..+..-| .+++...+++++++..+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 334444444433 46777888888777543
No 408
>PF15471 TMEM171: Transmembrane protein family 171
Probab=42.40 E-value=28 Score=32.93 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=7.9
Q ss_pred ccCCCCCCCCCCCcc
Q 005729 2 ILLPPQPLSVRFPAI 16 (680)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (680)
++| |||+|+-||--
T Consensus 217 iiF-PPPPPPYF~es 230 (319)
T PF15471_consen 217 IIF-PPPPPPYFPES 230 (319)
T ss_pred EEc-CCccCCCCCCC
Confidence 567 45555666543
No 409
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.41 E-value=4.6e+02 Score=27.87 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-------CCCCCC----
Q 005729 414 GYRDRGEWQRTFQVLKEMK---SSGVEPD-----THFYNVMIDTFGKYNCLHHAMAAFDRMLS-------EGIEPD---- 474 (680)
Q Consensus 414 ~~~~~g~~~~A~~l~~~m~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~---- 474 (680)
.+.-.|++.+|.+++...- ..|...+ ...+|.|...+.+.|.+..+..+|....+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456788888887765531 1221111 12235555566667777777777666553 343332
Q ss_pred -------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 475 -------TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (680)
Q Consensus 475 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 522 (680)
..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233443 33467789999999999988765 35678899999988864
No 410
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.33 E-value=2.7e+02 Score=30.17 Aligned_cols=131 Identities=9% Similarity=-0.012 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 318 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
-+-.++..|.. .+-|--...|...-.+.-.|+...|...+.........-..+....|...+.+.|..-.|-.++.+..
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34455555543 23344344443333344568888888888777644322233445566777778888888988888876
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 398 VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG 451 (680)
Q Consensus 398 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 451 (680)
... .....++..+.++|.-..++++|++.|++..+.. +.+.++-+.|...-|
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 654 3455677788899999999999999999987764 456667777766555
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.98 E-value=1.7e+02 Score=23.09 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=36.5
Q ss_pred HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS----NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
.+.|++.+|.+.+.. .|+.....+.... ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~-------~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHR-------YFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHH-------HHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467888888776653 3444444333331 22334456667788999999999998875
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.54 E-value=1.1e+02 Score=28.20 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCC
Q 005729 612 AVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTP 659 (680)
Q Consensus 612 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 659 (680)
+..++..+ ..|++.+|..++.++...|+.++|..+.+++.. ..|
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 33344444 578999999999999999999999999888877 456
No 413
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=40.31 E-value=2.5e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=10.9
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 005729 345 YVKMGYLKDAEFVVSEMERS 364 (680)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~ 364 (680)
+...|++.+|..+|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34455555555555555544
No 414
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=40.24 E-value=4.1e+02 Score=30.46 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=10.3
Q ss_pred CCcCcHHHHHHHHHHcCCCC
Q 005729 640 DKFHKVPAVYEEMILSGCTP 659 (680)
Q Consensus 640 g~~~~A~~~~~~m~~~g~~p 659 (680)
|+..+++.+++++...|+..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 259 GDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CCHHHHHHHHHHHHHhCCCH
Confidence 44555555555555554444
No 415
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.45 E-value=38 Score=37.25 Aligned_cols=10 Identities=40% Similarity=0.487 Sum_probs=3.7
Q ss_pred CCCCCCCCcc
Q 005729 7 QPLSVRFPAI 16 (680)
Q Consensus 7 ~~~~~~~~~~ 16 (680)
||+|+.-|..
T Consensus 119 qpL~~a~p~~ 128 (1118)
T KOG1029|consen 119 QPLPPAAPRR 128 (1118)
T ss_pred CCCCcccccc
Confidence 3333333333
No 416
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.37 E-value=3.6e+02 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 005729 407 IYSRILAGYRDRG--EWQRTFQVLKEMKSS 434 (680)
Q Consensus 407 ~~~~ll~~~~~~g--~~~~A~~l~~~m~~~ 434 (680)
.+..++.+|++.+ ++++|+.+..++++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 4455666666666 666777766666654
No 417
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.88 E-value=5.4e+02 Score=28.76 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHcCCCCC
Q 005729 630 TTLMKALIRVDKFHKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 630 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 660 (680)
..+++++.. |+...+..+++++.+.|..+.
T Consensus 255 ~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 255 FRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 334444433 566666666666666665554
No 418
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.91 E-value=2.3e+02 Score=23.12 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005729 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (680)
..++|..+.+.+...+. -...+--+-+..+.+.|+++.|. ..- .....||...|-+|-. .+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555555555432 11122222233445556666551 111 1112455555544432 35566666666666
Q ss_pred HHHHCC
Q 005729 500 EMQERG 505 (680)
Q Consensus 500 ~m~~~~ 505 (680)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555544
No 419
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=36.86 E-value=2.3e+02 Score=22.92 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=26.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
.+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555666655555444 2455555554433 24555555555555555555
No 420
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.83 E-value=3.6e+02 Score=25.29 Aligned_cols=71 Identities=11% Similarity=-0.008 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP----SNL-ALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (680)
++.-+.-.|...|+.+.-..+ ...|++.|.+..+..-.| +.. ..-.+.....+.|+.++|.++|.+....+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~f----l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRF----LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHH----HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 444555566667775555444 347777777776653222 222 33345566778999999999999999754
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.75 E-value=85 Score=30.89 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=33.0
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 588 KPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTT 631 (680)
Q Consensus 588 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 631 (680)
.|+.. -|+..|..-.+.||+++|+.+++++++.|+.--..+|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 45555 567888888899999999999999998887654445443
No 422
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.79 E-value=3.5e+02 Score=29.84 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=44.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH--HHHHHHH-HHCCCCCCHHHHHHHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLLGEQERWEDV--KRLLGNM-RAQGLLPNVVTYTTLVDI 554 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~A--~~~~~~m-~~~~~~p~~~~~~~li~~ 554 (680)
.|..+|..+|++..+..+++.+... |-+.=...||..++-..+.|.++-. ..-..+. ....+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6777888888888888888777654 2233345677777777777765432 1112222 223444456666655544
Q ss_pred H
Q 005729 555 Y 555 (680)
Q Consensus 555 ~ 555 (680)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.42 E-value=1.8e+02 Score=26.71 Aligned_cols=32 Identities=31% Similarity=0.229 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
.|+..+|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666666666655555543
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.36 E-value=3.9e+02 Score=30.24 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHH
Q 005729 629 YTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKA 663 (680)
Q Consensus 629 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 663 (680)
...|++++.+ ++...++.++++|...|+.+....
T Consensus 249 If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 249 LYELLTGIIN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHH
Confidence 3344444443 666777777777777766665433
No 425
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=35.23 E-value=3.2e+02 Score=26.58 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 595 NSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
+.+=.++.+.++++.|....++....+ +-|+.-+.--.-+|.+.|...-|.+-++..+++ -|+..+..++...+...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~~~a~~ir~~l~~l 261 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDDPIAEMIRAQLLEL 261 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCchHHHHHHHHHHHH
Confidence 345567888999999999999999842 336667777888899999999999999998875 78887777777776665
Q ss_pred Hhh
Q 005729 675 KQT 677 (680)
Q Consensus 675 k~~ 677 (680)
++.
T Consensus 262 ~~~ 264 (269)
T COG2912 262 RQE 264 (269)
T ss_pred HHH
Confidence 543
No 426
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.76 E-value=1.9e+02 Score=23.50 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQ 292 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~ 292 (680)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456667778889999888887763
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.71 E-value=87 Score=22.87 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (680)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 639 (680)
.|....++.++..+++..-.++++.++.++.+.|. -+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45667788888899888889999999999998874 4677777777766653
No 428
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.20 E-value=4.6e+02 Score=25.75 Aligned_cols=97 Identities=12% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---
Q 005729 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKS----SGVEPDTHFYN-VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI--- 476 (680)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--- 476 (680)
...+..+...|++.++.+.+.+..++..+ .|.+.|+.... .|.-.|....-+++.++..+.|.+.|...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34555566666666666666655554332 34444433221 22233444444566666667777666443322
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 477 -TWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 477 -~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
+|.-+.. ....++.+|-.++.+...
T Consensus 195 K~Y~Gi~~--m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIFK--MMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHhhHHHHHHHHHHhc
Confidence 2222211 123456777777666543
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.43 E-value=5.4e+02 Score=26.72 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 005729 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTH--FYNVMIDTF--GKYNCLHHAMAAFDRMLSEGIE--PDTITWNTLIDCH 485 (680)
Q Consensus 412 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~ 485 (680)
+..+.+.+++..|.++++.+... ++++.. .+..+..+| -..-++++|.+.++........ .....+..+....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
-....+......-..-.+.-..+-....-.-..-=+..|+++.|...+-++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 430
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.30 E-value=80 Score=23.05 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (680)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 522 (680)
|....++.++..+++-.-.++++..+.++.++| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344456666666666666666666666666666 3455555555555544
No 431
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.98 E-value=1.8e+02 Score=24.56 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCcHH
Q 005729 571 LSDQAVNAFRVMRTDGLKPSNL---ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDKFHKVP 646 (680)
Q Consensus 571 ~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 646 (680)
+.+++.+.|..... .+-|.. .|-.+++.+ ++..++|..|..+|+--.. ..|......+...|++.+|.
T Consensus 48 lLerc~~~f~~~~~--YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~ 119 (125)
T smart00777 48 LLERCIRYFEDDER--YKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKAD 119 (125)
T ss_pred HHHHHHHHhhhhhh--hcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34445555555443 344443 444444433 4467788889888766543 45667777788899999998
Q ss_pred HHHH
Q 005729 647 AVYE 650 (680)
Q Consensus 647 ~~~~ 650 (680)
++|+
T Consensus 120 ~iy~ 123 (125)
T smart00777 120 EVYQ 123 (125)
T ss_pred HHHH
Confidence 8876
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.48 E-value=1.6e+02 Score=24.79 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHh------hhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLE------GLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 617 (680)
..++...+..+....++..=.++++ ...+.+.++|+.|...|+--... .|......+...|++++|.++++..
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q ss_pred H
Q 005729 618 K 618 (680)
Q Consensus 618 ~ 618 (680)
+
T Consensus 126 i 126 (126)
T PF08311_consen 126 I 126 (126)
T ss_dssp H
T ss_pred C
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.73 E-value=3.1e+02 Score=22.99 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHH----HHHHHhcCCHHHHHHHHHHH
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSL----INAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l----i~~~~~~g~~~~A~~~~~~m 617 (680)
...+..|..++...|++++++.- .+.|+..|+.--+ +.-|.- .|-.. ..++-..|+.++|+..|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~s----A~~aL~YFNRRGE--L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQS----ADRALRYFNRRGE--LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH----HHHHHHHHHHH----TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHH----HHHHHHHHhhccc--cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 45566778888999999988854 4567777766544 333432 44333 23556689999998888754
No 434
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.54 E-value=1.9e+02 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.556 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 596 SLINAFGEDQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g 621 (680)
++++-+.++.-.++|+++++.|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666666666777777777776665
No 435
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.02 E-value=6.7e+02 Score=26.61 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 332 KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI 411 (680)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 411 (680)
.|...--..-|.--...|++..|-+-+....+.... ++.........+...|+++.+.+.+....+. +.....+...+
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~ 363 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCR 363 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 005729 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (680)
Q Consensus 412 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 491 (680)
++...+.|++++|..+-.-|.... ..+...........-..|-++++...|+++.... +|...-|-..+..-.--++-
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~e-ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNE-IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccc-cCChhheeeecccHHHHhHHHHHHHHHHHHhccC-ChhcccceeeeccceeccCc
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCChHH
Q 005729 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI--------YGQSGRFDD 563 (680)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~ 563 (680)
..--+.|..-.+.. ..+.......+....+-.+----+..++++.+..-+--..+..++-+. |.+.-.+..
T Consensus 442 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (831)
T PRK15180 442 NAFSEAFHAGIQSQ-RLNDTFMETALSLAIKFSDELIFMHALEQLLRHESEFALTVLSTIHDTGLVIRTAFCIKNMSYHQ 520 (831)
T ss_pred chHHHHHHhhhhhh-hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhHHHHHHhhhcccceEeeehhhhcccHHHH
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 005729 564 AIECLEGLSDQAVNAFRV 581 (680)
Q Consensus 564 A~~~~~~~~~~a~~~~~~ 581 (680)
|++. ...++...+|+.
T Consensus 521 ~~~~--~~~~~~~~~~~~ 536 (831)
T PRK15180 521 ALRT--SYKDKIHDVFEA 536 (831)
T ss_pred HHHh--hhHHHHHHHHHH
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.99 E-value=5.4e+02 Score=27.87 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 005729 305 AVITALSNSGRTIEAEAVFEELK 327 (680)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~ 327 (680)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34445555555555555554443
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.75 E-value=2.5e+02 Score=24.45 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
+...+.+.|++++.. -..++..+.+.++.-.|.++++++.+.++..+..|.-..+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445555554432 33455556666565667777777766665555555444444444444
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.38 E-value=2.4e+02 Score=27.18 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005729 375 LLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m 396 (680)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4556666777777777777665
No 439
>PRK10941 hypothetical protein; Provisional
Probab=29.81 E-value=5.4e+02 Score=25.18 Aligned_cols=60 Identities=10% Similarity=-0.118 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455556666666666666665543 334444444444556666666666655555543
No 440
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=29.65 E-value=76 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred CCCCCCCCCccccccccccccccccCCccccc
Q 005729 6 PQPLSVRFPAIHSACPITRHHVIFQPAFSVST 37 (680)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (680)
-|++||+|.++-+ |-.|++++++|+.++++
T Consensus 444 ~~~~~PQ~~~~~~--P~~~~~~m~~~~~~~~G 473 (737)
T KOG3779|consen 444 RKNSSPQSASGPA--PGGHHQPLHQSPLSATG 473 (737)
T ss_pred cCCCCcccCCCCC--CCCCCccCCCCCCcccC
Confidence 3556667766643 45577889999988876
No 441
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=29.38 E-value=1e+03 Score=28.21 Aligned_cols=262 Identities=12% Similarity=0.054 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 368 PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447 (680)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 447 (680)
+|..+-...+..+.+.+..+ +...+..... .++...-...+.++.+.+........+..+.+ .+|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHHH
Confidence 45555555555555555433 3333334332 23433334444444433221111222323332 24555555555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (680)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 527 (680)
.++...+.-+ .. .+-...+ .+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 5555433111 11 2222222 3455555555555555444321 122222 345555556666666665543
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 528 D-VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR 606 (680)
Q Consensus 528 ~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 606 (680)
. +...+..+.+ .++..+-.+.+.++.+.|....+...+ ..+.. .++..+=...+.++.+.+.
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l-----------~~aL~---d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAA-----------TAALR---ASAWQVRQGAARALAGAAA 836 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHH-----------HHHhc---CCChHHHHHHHHHHHhccc
Confidence 2 2344444443 346777777777777777654332211 11121 2444444556666666665
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 607 DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 607 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 672 (680)
+++...+-.+.+ .|+...-...+.++.+.+.-..+...+...++ .+|..+......|++
T Consensus 837 -~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 -DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRALA 895 (897)
T ss_pred -cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Confidence 455565555554 46777777777777775334467777777766 557777766666664
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.31 E-value=2.5e+02 Score=27.08 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=9.5
Q ss_pred HHHHHccCCHHHHHHHHHHH
Q 005729 447 IDTFGKYNCLHHAMAAFDRM 466 (680)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m 466 (680)
..-|.+.|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444445555555554444
No 443
>PLN03025 replication factor C subunit; Provisional
Probab=29.29 E-value=6e+02 Score=25.51 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcH--------HHHHHHHHHcCCCCC
Q 005729 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKV--------PAVYEEMILSGCTPD 660 (680)
Q Consensus 589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A--------~~~~~~m~~~g~~pd 660 (680)
+.......++..+. .+++++|...+.++...|..|.. +...+...+... ++++. ...++.-+..|..+-
T Consensus 223 ~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~-Il~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 299 (319)
T PLN03025 223 PHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTD-IITTLFRVVKNY-DMPEFLKLEYLREIGFAHMRICDGVGSL 299 (319)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 33334445555554 58899999999999998887753 333333333222 22222 122334445676655
Q ss_pred HHHHHHHHHHH
Q 005729 661 RKARAMLRSAL 671 (680)
Q Consensus 661 ~~~~~~l~~a~ 671 (680)
......+.+.+
T Consensus 300 ~~l~a~~~~~~ 310 (319)
T PLN03025 300 LQLSGLLAKLC 310 (319)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 444
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.04 E-value=3.2e+02 Score=23.73 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 524 (680)
.++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444445445555555555555544444444333334444333
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.82 E-value=4.8e+02 Score=25.85 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
++..+.+.+++.+..+.+..+. ....-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444455555555555555554 233444556666777777777777776653
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.61 E-value=55 Score=27.80 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (680)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (680)
.|.-.+|..+|+.|.+.|-+|| .|+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 4555666777777777776665 3444443
No 447
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.51 E-value=3.2e+02 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m 501 (680)
..++..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34566677778888888877775
No 448
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.29 E-value=3.6e+02 Score=22.63 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005729 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV 271 (680)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 271 (680)
|...+..|-.++...|++++++.--+.... -+.+.|.+.....+....-+. +-
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---------------YFNRRGEL~qdeGklWIaaVf------------sr 106 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALR---------------YFNRRGELHQDEGKLWIAAVF------------SR 106 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---------------HHHHH--TTSTHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------HHhhccccccccchhHHHHHH------------HH
Confidence 345777888899999999998876655443 344555554333222111111 11
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 005729 272 IVGFAKAGDASKAMRFLGMA 291 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~ 291 (680)
..++-..|+.++|+..|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 23455678889988888653
No 449
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.23 E-value=4.1e+02 Score=24.26 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=13.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 005729 342 LKGYVKMGYLKDAEFVVSEMER 363 (680)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~m~~ 363 (680)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3455666666666666666654
No 450
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.22 E-value=1e+03 Score=27.87 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
|..+|..-..-+...|++..|++++.++.+ .|-.++...|..++..+...|. ..-..+.+.+.
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw-~H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW-NHLATFVKNWM 1293 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc-hHhHHHHhhhe
Confidence 444555555556667888888888888775 5566777777777777777774 34444555544
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.89 E-value=4e+02 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 596 SLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
..+..|.+.|.+++|.+++++... .|+......-+....+..
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 445679999999999999999886 455555555554444443
No 452
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.88 E-value=6.1e+02 Score=25.19 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 283 KAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (680)
Q Consensus 283 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 362 (680)
=|.++|...... ...+.++..+.+.+.-+.-.++ ++|+..+-......+...|--+- .++.+.=.
T Consensus 185 F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~el-vey~~~q~ 249 (412)
T KOG2297|consen 185 FAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKEL-VEYHRNQQ 249 (412)
T ss_pred HHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHH-HHHHHHHH
Confidence 355666655421 1245666666655554444333 36666666666555555552211 11111100
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHH----HHHHHHHHHHhcCC-HHHHHHHHHHHHHCCC
Q 005729 363 RSGVLPDEHTYSLLIDAYANAGRWESARIVLKE-MEVSHAKPNSF----IYSRILAGYRDRGE-WQRTFQVLKEMKSSGV 436 (680)
Q Consensus 363 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~----~~~~ll~~~~~~g~-~~~A~~l~~~m~~~~~ 436 (680)
..| .--.....|.+-..+...+++.....++ |...+ -|+.. .|..++++---+.+ ---|.+.++++
T Consensus 250 ~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl----- 321 (412)
T KOG2297|consen 250 SEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL----- 321 (412)
T ss_pred HHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH-----
Confidence 000 0011222333334444455555554444 44444 34433 56666655432211 11233333333
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHH
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
.+|.-|+.+++..|+.+-.+
T Consensus 322 ----K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 ----KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred ----HhhhHHHHHHhcCChHHHHH
Confidence 35677888888888776544
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.81 E-value=1.2e+02 Score=31.88 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=61.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTY-NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR 560 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 560 (680)
...+.+.+.++.|..++.+.++.. ||...| ..=..++.+.+++..|..=..++++.. |+ .+.+|.+.|.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~------~~K~Y~rrg~ 80 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PT------YIKAYVRRGT 80 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--ch------hhheeeeccH
Confidence 445566778888888888888764 544433 333467778888888887777777643 32 3444444444
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFG 602 (680)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 602 (680)
.-.+..-+ .+|+..|+.... +.|+..-...++.-|-
T Consensus 81 a~m~l~~~----~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 81 AVMALGEF----KKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHhHHHH----HHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 43333222 133333334333 5677776666666553
No 454
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.67 E-value=87 Score=26.66 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 635 ALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSAL 671 (680)
Q Consensus 635 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~ 671 (680)
.+...|.-..|-.+|++|++.|-.||. |..|+.++
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345668888999999999999999986 44555443
No 455
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.18 E-value=7.9e+02 Score=26.70 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=9.0
Q ss_pred CCcCcHHHHHHHHHHcCCC
Q 005729 640 DKFHKVPAVYEEMILSGCT 658 (680)
Q Consensus 640 g~~~~A~~~~~~m~~~g~~ 658 (680)
++.++|..++++++..|..
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4444445555544444433
No 456
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.78 E-value=4.2e+02 Score=27.98 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCC---CCHHHHHHHHHHH----
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER------GYF---PCTTTYNIMINLL---- 520 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~---p~~~t~~~li~~~---- 520 (680)
+.+++-.++++.+.+.| .+| ....-|++|-+.+++++|...+++-.+. |++ -...+...++...
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 34666666666666654 223 3334567777777777777777766553 211 0112222232222
Q ss_pred -HhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 521 -GEQERWEDVKRLLGNMRAQGLLP---NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNS 596 (680)
Q Consensus 521 -~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 596 (680)
.++|. ..+..+++.+...|+.- -..+|+. -|+|.=-+++++..|+ .++ ++.....+.|+..|..+|..
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wq-yvd---RL~g~y~e~gv~InrE~FGp 216 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQ-YCD---RLVGFYEEQGVHINREPFGP 216 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHH-HHH---HHHHHHHhcCceeccccccC
Confidence 12222 23455555555555432 1233332 2555556666666654 122 22223334577767776664
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH--HCCCC
Q 005729 597 LINAFGEDQRDAEAFAVLQYMK--ENGLK 623 (680)
Q Consensus 597 li~~~~~~g~~~~A~~~~~~m~--~~g~~ 623 (680)
|...++ ==...-|+.+++-+. +.|++
T Consensus 217 LtgtLv-PPsisiav~ilE~Lla~eqGVk 244 (480)
T TIGR01503 217 LTGTLV-PPSISNAIGIIEGLLAAEQGVK 244 (480)
T ss_pred CCCCcc-ChHHHHHHHHHHHHHHHHcCCe
Confidence 432221 112344555555554 35554
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.75 E-value=3.6e+02 Score=26.73 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF 486 (680)
Q Consensus 425 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 486 (680)
.++++.|...++.|.-..+..+.-.+.+.=.+.++..+|+.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 46777777777888877777777777777778888888888774 3333666666665
No 458
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.67 E-value=7.2e+02 Score=25.58 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=78.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCCChHHHHHHHHHHHhC
Q 005729 187 QRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT-------RTNKIDSSLLQKLYKEIECD 259 (680)
Q Consensus 187 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~~~~~~~~l~~~~~~~ 259 (680)
...+-.+.+...+-..+.+.|+.+.|.++.++..-. +...+.... ..|... ..-
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~~F~~~~~~~~~g~~r-----------L~~ 94 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHPSFSPFRSNLTSGNCR-----------LDY 94 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHHHhhhhhcccccCccc-----------cCC
Confidence 445667888999999999999999999999887532 111111000 001000 000
Q ss_pred CCCcCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 005729 260 KIELDGQLLNDV---IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS-NSGRTIEAEAVFEELKE 328 (680)
Q Consensus 260 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~ 328 (680)
...-|...|-++ |..+.+.|-+..|+++.+.+...+..-|.......|+.|+ +.++++--+++.+....
T Consensus 95 ~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 95 RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 112244444444 4567889999999999999998765446666666777665 57778778888877654
No 459
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.17 E-value=7.6e+02 Score=25.73 Aligned_cols=104 Identities=22% Similarity=0.295 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 005729 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDF-INYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLND 270 (680)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 270 (680)
+..+...++. ...|+...|+..++.+.... +++. .+... .++++.+-.. ....+...+-.
T Consensus 191 ~~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~-~~~~~~~~~~---------------l~~~l~~~~~-~~Dk~gD~hYd 251 (436)
T COG2256 191 DEEALDYLVR--LSNGDARRALNLLELAALSA-EPDEVLILEL---------------LEEILQRRSA-RFDKDGDAHYD 251 (436)
T ss_pred CHHHHHHHHH--hcCchHHHHHHHHHHHHHhc-CCCcccCHHH---------------HHHHHhhhhh-ccCCCcchHHH
Confidence 3344444443 45689999999988877653 2322 12111 1222222111 12334445555
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005729 271 VIVGFAKA---GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (680)
Q Consensus 271 li~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 314 (680)
+|+++.|+ .+++.|+-++.+|.+.|..|....-..++-++-.-|
T Consensus 252 liSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 252 LISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 66776654 688889999999999887776666555555554444
No 460
>PRK12356 glutaminase; Reviewed
Probab=25.79 E-value=5.4e+02 Score=25.82 Aligned_cols=24 Identities=0% Similarity=-0.038 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCcCcHHHHHHH
Q 005729 628 TYTTLMKALIRVDKFHKVPAVYEE 651 (680)
Q Consensus 628 ~~~~l~~~~~~~g~~~~A~~~~~~ 651 (680)
+-..+.......|-|+.+-++.-+
T Consensus 233 ~~r~v~s~M~TCGmYd~SG~fa~~ 256 (319)
T PRK12356 233 NVPYILAEMTMEGLYERSGDWAYT 256 (319)
T ss_pred HHHHHHHHHHHcCCccchhhHHHH
Confidence 334444444555666666555443
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.78 E-value=6.8e+02 Score=24.97 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCc
Q 005729 573 DQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR----------VDKF 642 (680)
Q Consensus 573 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----------~g~~ 642 (680)
+...++|+.|.+.++.|...++.-+.-.+.+.=.+.+++.+|+.+.. |+.-|..|+..|+. .|++
T Consensus 260 ~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF 334 (370)
T KOG4567|consen 260 KHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDF 334 (370)
T ss_pred HhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcch
Confidence 34467789999999999999887777778888899999999999875 33335666665543 3566
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 643 HKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 643 ~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
..-.++++. -...|....-.+...++..
T Consensus 335 ~~nmkLLQ~----yp~tdi~~~l~~A~~Lr~~ 362 (370)
T KOG4567|consen 335 TVNMKLLQN----YPTTDISKMLAVADSLRDK 362 (370)
T ss_pred HHHHHHHhc----CCCCCHHHHHHHHHHHHhc
Confidence 555555443 2233333333444444443
No 462
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.45 E-value=7.1e+02 Score=25.08 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 457 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
+.-+.++++.++.. +.+...+-.++..+.+..+.++..+.|+++.... +-+...|...+...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 34444555555443 2445555556666666666666666666666553 23455555555544
No 463
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.29 E-value=1.3e+02 Score=31.62 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 577 NAFRVMRTDGLKPSNLAL-NSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 577 ~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
.++.+..+ +.||...| ..-..++.+.+++..|+.=+..+++ ..|+. ..|..-..++.+.+++.+|+..|+....
T Consensus 25 dlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 25 DLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 33444444 56776644 3334788899999999988888887 34543 3455555677788888888888888776
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 005729 655 SGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 655 ~g~~pd~~~~~~l~~a~~~~ 674 (680)
+.|+.........-|...
T Consensus 101 --l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 101 --LAPNDPDATRKIDECNKI 118 (476)
T ss_pred --cCcCcHHHHHHHHHHHHH
Confidence 688887666666555543
No 464
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.23 E-value=8.1e+02 Score=25.71 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTIT 477 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~ 477 (680)
.+.+.|..++..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 455555555555555554444333
No 465
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.14 E-value=8.5e+02 Score=26.49 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=12.6
Q ss_pred CCcCcHHHHHHHHHHcCCCCCH
Q 005729 640 DKFHKVPAVYEEMILSGCTPDR 661 (680)
Q Consensus 640 g~~~~A~~~~~~m~~~g~~pd~ 661 (680)
|+.+.+..++++|...|..|..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4555566666666666555543
No 466
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.79 E-value=4.8e+02 Score=28.90 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 410 RILAGYRDRGEWQRTFQVLKEMKSS--GVEPDTHFYNVMIDTFGKYNCLH------HAMAAFDRMLSEGIEPDTITWNTL 481 (680)
Q Consensus 410 ~ll~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 481 (680)
+++.+|...|++.++.++++.+... |-+.-...||..|+-+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998754 33334567788888888888653 3333333333 45678888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 005729 482 IDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~ 503 (680)
+++-..--+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333333344444443
No 467
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.56 E-value=7.1e+02 Score=24.79 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=36.5
Q ss_pred cCChhHHHHHHHH-HHHCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005729 488 CGRYDRAEELFEE-MQERGYFPCTT----TYNIMINLLGEQERWE-DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF 561 (680)
Q Consensus 488 ~g~~~~A~~~~~~-m~~~~~~p~~~----t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 561 (680)
...+++......+ |.+.+ .|+.. .|..++++-.-..+-+ -|.+.++. ..+|.-|+.+++..|+.
T Consensus 268 e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQS 337 (412)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChH
Confidence 3345555555544 44444 45543 4666666543332211 12233322 34688889999999887
Q ss_pred HHHH
Q 005729 562 DDAI 565 (680)
Q Consensus 562 ~~A~ 565 (680)
+-.+
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7544
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=4.5e+02 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQ 292 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~ 292 (680)
+...+......|++++|.+-++.+.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444555566777777777766554
No 469
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.12 E-value=9.2e+02 Score=25.97 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHH
Q 005729 625 DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARA 665 (680)
Q Consensus 625 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 665 (680)
+...+..++.++...+....|+.++.+|++.|..|......
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~ 287 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWD 287 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33444455555544444567888888888888777665544
No 470
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.06 E-value=3.5e+02 Score=21.14 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 005729 384 GRWESARIVLKEME 397 (680)
Q Consensus 384 g~~~~A~~~~~~m~ 397 (680)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 471
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.55 E-value=6.9e+02 Score=24.29 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=48.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHc
Q 005729 312 NSGRTIEAEAVFEELKESGLKPRT---KAYNALLKGYVKMGYLKDAEFVVSEMERS---GV--LPDEHTYSLLIDAYANA 383 (680)
Q Consensus 312 ~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~~~~~~~~~li~~~~~~ 383 (680)
+...+++|+.-|++..+..-.... .....++..+.+.|++++....+.+|... .+ .-+..+.|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344678888888887765322222 33455677778888888888777776531 11 12344555555555545
Q ss_pred CCHHHHHHHHH
Q 005729 384 GRWESARIVLK 394 (680)
Q Consensus 384 g~~~~A~~~~~ 394 (680)
.+.+-..+.|+
T Consensus 119 ~~m~LLQ~FYe 129 (440)
T KOG1464|consen 119 KNMDLLQEFYE 129 (440)
T ss_pred hhhHHHHHHHH
Confidence 55444444443
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.32 E-value=9.8e+02 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 005729 375 LLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888877764
No 473
>PRK09857 putative transposase; Provisional
Probab=23.02 E-value=5.7e+02 Score=25.37 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005729 340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK 402 (680)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 402 (680)
.++....+.++.++..++++.+.+.. +......-++..-+.+.|.-++++++..+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444344455555555555544431 112222223444444444444455555555555443
No 474
>PRK14135 recX recombination regulator RecX; Provisional
Probab=22.91 E-value=7e+02 Score=24.15 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 529 VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA 608 (680)
Q Consensus 529 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 608 (680)
...+...-+..|...+...+..++..-....-.+.|+.++......-.++.+++.+.|+.+ +
T Consensus 28 ~~~~~~~~L~~g~~l~~~~~~~i~~~~~~~~a~~~Al~~L~~r~~s~~el~~kL~~kg~~~------------------~ 89 (263)
T PRK14135 28 EDTLVKFMLKKGKELDEEDLEEIQYADQVSKGKNLALYYLSYQMRTEKEVRDYLKKHEISE------------------E 89 (263)
T ss_pred HHHHHHhcCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHCCCCH------------------H
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCH
Q 005729 609 EAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDR 661 (680)
Q Consensus 609 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 661 (680)
.+..+++.+.+.|+--|...-...+..+.+.+. ..-.++..++.++|+.++.
T Consensus 90 ~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~~ 141 (263)
T PRK14135 90 IISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDEI 141 (263)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHHH
No 475
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.90 E-value=6.8e+02 Score=24.01 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHH
Q 005729 450 FGKYNCLHHAMAAFDRMLSEGIEPDT-ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI-MINLLGEQERWE 527 (680)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~~~~~~g~~~ 527 (680)
|.....++.|...|.+.+.. .|+. .-|..-+.++.+..+++.+.+=-.+.++. .||.+.-.. +..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455667777766665554 3555 34555666777777777777666665554 344443333 334445666677
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 005729 528 DVKRLLGNMRA----QGLLPNVVTYTTLVDI 554 (680)
Q Consensus 528 ~A~~~~~~m~~----~~~~p~~~~~~~li~~ 554 (680)
+|...+.+... ..+.+-......|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777766632 2334444445554444
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.73 E-value=3.5e+02 Score=22.89 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 575 AVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQY 616 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~ 616 (680)
..++|..|..+|+-.... .|......+-..|++.+|.++|+.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345577888887766654 677788888889999999999863
No 477
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.72 E-value=3.8e+02 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005729 517 INLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 517 i~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.......|+.++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344556666666666666654
No 478
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.46 E-value=1.9e+02 Score=17.69 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 607 DAEAFAVLQYMKENGLKPDVVTYTT 631 (680)
Q Consensus 607 ~~~A~~~~~~m~~~g~~p~~~~~~~ 631 (680)
++.|..+|++... +.|++.+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4566666666665 4566655544
No 479
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=22.31 E-value=1e+03 Score=25.88 Aligned_cols=50 Identities=16% Similarity=0.023 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 427 (680)
+.-.+..|...+...+++.+..+.... ...|..++..+...+...+|...
T Consensus 306 ~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~w 355 (587)
T COG4715 306 VDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELW 355 (587)
T ss_pred HHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHH
Confidence 334445555555555555555444321 22344444555555554444443
No 480
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=21.64 E-value=1.1e+03 Score=26.16 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 005729 604 DQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p 624 (680)
.|+.+.|+.+++.+...|..|
T Consensus 271 ~gd~~~Al~~l~~l~~~G~~p 291 (598)
T PRK09111 271 RGDVAAALAEFRAQYDAGADP 291 (598)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 356666666666666655444
No 481
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.59 E-value=1.7e+02 Score=16.66 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 605 QRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (680)
Q Consensus 605 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (680)
|+.+.|..+|+++... .+-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 4556667777776653 2234455554443
No 482
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.45 E-value=7.2e+02 Score=23.72 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 005729 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-YNCLHHAMAAFDRM 466 (680)
Q Consensus 410 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 466 (680)
.+++.+-+.|+++++.+.++++...+...+..-.+.|-.+|-. .|....+++++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455556666777777777776666555555555555555522 33334444444443
No 483
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=21.18 E-value=7.1e+02 Score=23.57 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 005729 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP---SNLAL--NSLINAFGEDQRDAEAFAVLQ 615 (680)
Q Consensus 541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~ 615 (680)
+.++..-++.|+--|.-...+.+|.+.|. ...|+.| +..++ ..-|......|+.++|++...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa-------------~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFA-------------KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhc-------------cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 44455556666655555544555544432 2334554 33333 234556678899999988877
Q ss_pred HHHHCCCCCCHHHHHHHHH----HHHhcCCcCcHHHHHHHHHH
Q 005729 616 YMKENGLKPDVVTYTTLMK----ALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 616 ~m~~~g~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~m~~ 654 (680)
+....-+.-|...+-.|.. =+.|.|..++|+++.+.=+.
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 7653323334433333332 14677778888877766543
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.13 E-value=5.5e+02 Score=22.99 Aligned_cols=59 Identities=12% Similarity=-0.046 Sum_probs=30.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 467 LSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 467 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
.+.|...+..- ..++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444433332 233444444455556666666666665555555555555555555543
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.05 E-value=4.8e+02 Score=22.60 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 385 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44555666666655554445554444444444444
No 486
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.04 E-value=3.8e+02 Score=22.11 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 596 SLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
++++-+.++...++|+++++.|.+.| ..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
No 487
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=20.77 E-value=1.1e+03 Score=25.63 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=11.8
Q ss_pred CCcCcHHHHHHHHHHcCCCCC
Q 005729 640 DKFHKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 640 g~~~~A~~~~~~m~~~g~~pd 660 (680)
|+.++|..+++++...|..|.
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 555555555555555555544
No 488
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=20.74 E-value=8.7e+02 Score=24.40 Aligned_cols=161 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005729 306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR 385 (680)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 385 (680)
+++...+..+..+-++.-....+.+ ....-..++-+--..--+.+|+++|++..+. -..+|+ +..+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN---~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka----~e~~yr-------~sqq 255 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEIN---NECATAYVLLAEEEATTIVDAERLFKQALKA----GETIYR-------QSQQ 255 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcC---chhhhHHHhhhhhhhhhHHHHHHHHHHHHHH----HHHHHh-------hHHH
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005729 386 WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE-MKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFD 464 (680)
Q Consensus 386 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 464 (680)
...--...+.+.+++...-...-..+.-+..+.|+..+|.+.|++ |++..+-.-......|+.++.....+.+...++.
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHH
Q 005729 465 RMLSEGIEPDTITWNT 480 (680)
Q Consensus 465 ~m~~~~~~~~~~~~~~ 480 (680)
+..+...+.+.....+
T Consensus 336 kYDdislPkSA~icYT 351 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYT 351 (556)
T ss_pred hhccccCcchHHHHHH
No 489
>COG0819 TenA Putative transcription activator [Transcription]
Probab=20.65 E-value=7.2e+02 Score=23.43 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 540 GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFG 602 (680)
Q Consensus 540 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 602 (680)
...|....|+..+...+..|++.+....+--..---.++.+.+...+..+....|...|+.|.
T Consensus 104 ~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~ 166 (218)
T COG0819 104 EPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYA 166 (218)
T ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcC
Confidence 344555556666666666665554443322111111112223333232233445777777775
No 490
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.62 E-value=6.7e+02 Score=23.09 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005729 522 EQERWEDVKRLLGNMRA 538 (680)
Q Consensus 522 ~~g~~~~A~~~~~~m~~ 538 (680)
+.|+++.|.++++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666666543
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.25 E-value=1e+03 Score=26.93 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHhc
Q 005729 457 HHAMAAFDRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT----------YNIMINLLGEQ 523 (680)
Q Consensus 457 ~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----------~~~li~~~~~~ 523 (680)
++--..+++|...--.|+ ..+-..++-.|....+++..+++.+.+.. .||..- |...++---+.
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ---SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINA 600 (680)
Q Consensus 524 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 600 (680)
|+-++|+...-.|.+..-..-+..|....+.|-. ..++.+| +..+.|.+.|++.-+ ..|+..+=-.+...
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa-----~s~~~a~~WyrkaFe--veP~~~sGIN~atL 329 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDA-----ESLNHAIEWYRKAFE--VEPLEYSGINLATL 329 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcch-----hhHHHHHHHHHHHhc--cCchhhccccHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 601 FGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 601 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
+...|..-+--. +|+..| ..|-..+.+.|.+++-.++|+-..--|...=...+....+|.+.+
T Consensus 330 L~aaG~~Fens~---Elq~Ig--------mkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 330 LRAAGEHFENSL---ELQQIG--------MKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred HHHhhhhccchH---HHHHHH--------HHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHH
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.23 E-value=2.1e+02 Score=23.44 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCC
Q 005729 198 ALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI 244 (680)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 244 (680)
.++..+...+..-.|-++++++.+.+...+..|....|+.+.+.|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 45666666677778888888888887777777777777777776654
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.10 E-value=5.6e+02 Score=22.90 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=19.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
..+...++.-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333444455555555555554444444444444444443
Done!