Query 005729
Match_columns 680
No_of_seqs 777 out of 3551
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.2E-38 2.8E-42 347.3 46.6 485 163-669 84-592 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.4E-36 2.5E-40 331.5 43.6 481 128-636 86-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.8E-29 1.3E-33 266.8 26.0 204 250-453 10-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 9.7E-29 3.3E-33 263.6 26.0 205 318-522 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-25 1.6E-29 230.7 47.8 359 275-654 9-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-24 6.3E-29 226.1 49.6 381 235-641 6-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.2E-22 2.5E-26 214.3 38.4 447 193-663 6-484 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.5E-20 8.6E-25 198.6 42.7 345 263-652 24-406 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.8E-20 6.3E-25 199.7 41.0 316 212-539 11-358 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.5E-20 5.3E-25 203.8 36.1 432 136-627 15-483 (514)
11 3fp2_A TPR repeat-containing p 99.9 7.1E-20 2.4E-24 199.9 40.7 436 193-656 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.8E-19 1.3E-23 194.1 37.3 402 190-625 56-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.7E-18 2.6E-22 173.0 41.3 337 299-679 2-358 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.9E-17 9.9E-22 168.7 40.8 332 264-638 2-352 (359)
15 2xm6_A Protein corresponding t 99.8 7.2E-15 2.5E-19 158.2 52.1 354 264-658 38-435 (490)
16 2xm6_A Protein corresponding t 99.8 1.3E-14 4.3E-19 156.3 52.3 353 191-621 37-433 (490)
17 3hym_B Cell division cycle pro 99.8 1.4E-16 4.7E-21 161.7 33.0 294 262-562 19-322 (330)
18 3hym_B Cell division cycle pro 99.8 8.5E-17 2.9E-21 163.3 30.0 290 334-642 21-321 (330)
19 2ooe_A Cleavage stimulation fa 99.8 6.4E-15 2.2E-19 160.3 46.1 424 189-655 9-492 (530)
20 1fch_A Peroxisomal targeting s 99.8 8.1E-17 2.8E-21 166.3 27.8 290 275-570 35-355 (368)
21 2ooe_A Cleavage stimulation fa 99.8 2.8E-14 9.5E-19 155.2 47.1 409 151-569 3-487 (530)
22 1xi4_A Clathrin heavy chain; a 99.7 8.2E-13 2.8E-17 149.3 53.0 434 141-638 853-1326(1630)
23 1fch_A Peroxisomal targeting s 99.7 8.5E-16 2.9E-20 158.6 27.4 266 265-536 64-356 (368)
24 4eqf_A PEX5-related protein; a 99.7 7.1E-16 2.4E-20 159.2 26.1 263 302-569 67-351 (365)
25 1xi4_A Clathrin heavy chain; a 99.7 1.5E-12 5E-17 147.3 54.1 351 199-605 1055-1415(1630)
26 4eqf_A PEX5-related protein; a 99.7 6.9E-16 2.4E-20 159.3 25.1 268 264-535 64-352 (365)
27 1b89_A Protein (clathrin heavy 99.7 7.8E-16 2.7E-20 156.5 24.2 344 175-568 15-366 (449)
28 4g1t_A Interferon-induced prot 99.7 2E-14 6.8E-19 153.9 36.5 369 260-656 46-460 (472)
29 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.4E-22 181.1 12.0 116 265-380 127-246 (1134)
30 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5E-22 181.9 11.0 154 224-384 123-286 (1134)
31 3cv0_A Peroxisome targeting si 99.7 4.1E-15 1.4E-19 150.5 28.4 277 266-570 22-311 (327)
32 3cv0_A Peroxisome targeting si 99.7 3.9E-15 1.3E-19 150.7 26.5 280 227-536 20-312 (327)
33 1b89_A Protein (clathrin heavy 99.7 4.4E-16 1.5E-20 158.3 18.4 266 266-569 33-306 (449)
34 3mkr_A Coatomer subunit epsilo 99.7 1.2E-14 4E-19 144.5 27.9 273 273-566 7-286 (291)
35 3mkr_A Coatomer subunit epsilo 99.7 2E-14 6.8E-19 142.9 28.4 251 343-619 7-263 (291)
36 4g1t_A Interferon-induced prot 99.7 2.3E-13 7.9E-18 145.6 36.5 372 192-621 50-460 (472)
37 3uq3_A Heat shock protein STI1 99.6 4.1E-13 1.4E-17 130.6 26.6 222 303-538 8-235 (258)
38 3uq3_A Heat shock protein STI1 99.6 8.3E-13 2.8E-17 128.4 26.4 226 265-504 5-236 (258)
39 2pl2_A Hypothetical conserved 99.5 1.2E-12 3.9E-17 124.1 23.6 199 262-466 2-211 (217)
40 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.4E-17 123.8 22.7 91 441-534 119-209 (217)
41 3e4b_A ALGK; tetratricopeptide 99.5 9.8E-13 3.3E-17 139.5 24.0 379 198-654 8-420 (452)
42 1ouv_A Conserved hypothetical 99.5 3.6E-11 1.2E-15 118.2 33.5 224 264-505 5-252 (273)
43 1ouv_A Conserved hypothetical 99.5 4.8E-11 1.6E-15 117.3 33.2 224 299-540 5-252 (273)
44 3e4b_A ALGK; tetratricopeptide 99.5 9.7E-13 3.3E-17 139.5 21.6 343 271-657 9-389 (452)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-11 4.8E-16 119.4 27.9 199 302-504 39-238 (252)
46 3u4t_A TPR repeat-containing p 99.5 4.9E-12 1.7E-16 124.1 24.4 195 269-467 7-206 (272)
47 2h6f_A Protein farnesyltransfe 99.5 1.1E-11 3.8E-16 127.3 27.0 246 266-519 98-362 (382)
48 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-11 6.4E-16 118.5 27.1 201 335-539 37-238 (252)
49 2vq2_A PILW, putative fimbrial 99.5 3.8E-11 1.3E-15 113.8 28.4 197 303-502 11-209 (225)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 3E-12 1E-16 125.9 21.4 247 277-533 17-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.5 5.1E-12 1.7E-16 121.6 21.9 196 304-504 27-222 (243)
52 3u4t_A TPR repeat-containing p 99.5 1.7E-11 5.8E-16 120.3 25.8 244 302-551 5-261 (272)
53 2vq2_A PILW, putative fimbrial 99.5 4.2E-11 1.4E-15 113.5 27.7 202 334-539 7-211 (225)
54 2h6f_A Protein farnesyltransfe 99.5 1.4E-11 4.8E-16 126.6 25.9 248 300-556 97-364 (382)
55 2q7f_A YRRB protein; TPR, prot 99.5 6.8E-12 2.3E-16 120.7 21.8 212 333-550 21-232 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.3E-12 2.5E-16 123.0 21.6 248 381-649 16-269 (275)
57 4a1s_A PINS, partner of inscut 99.4 3.2E-12 1.1E-16 133.9 19.6 281 336-655 49-372 (411)
58 3sf4_A G-protein-signaling mod 99.4 4.7E-12 1.6E-16 132.1 20.1 308 298-644 7-365 (406)
59 4a1s_A PINS, partner of inscut 99.4 3.5E-12 1.2E-16 133.6 18.7 283 300-619 48-371 (411)
60 4e6h_A MRNA 3'-END-processing 99.4 5.5E-09 1.9E-13 114.6 44.2 431 188-655 61-570 (679)
61 3sf4_A G-protein-signaling mod 99.4 8.9E-12 3E-16 130.0 21.2 307 262-607 6-363 (406)
62 3ro2_A PINS homolog, G-protein 99.4 1.4E-11 4.7E-16 124.6 19.6 279 338-655 8-332 (338)
63 3ro2_A PINS homolog, G-protein 99.4 3.2E-11 1.1E-15 121.9 20.3 283 300-619 5-331 (338)
64 4e6h_A MRNA 3'-END-processing 99.4 1.7E-08 5.9E-13 110.7 42.6 214 352-569 326-565 (679)
65 3ulq_A Response regulator aspa 99.3 8.5E-11 2.9E-15 121.9 23.2 235 411-655 109-368 (383)
66 2ond_A Cleavage stimulation fa 99.3 1E-09 3.6E-14 109.8 30.0 218 317-539 33-270 (308)
67 2ond_A Cleavage stimulation fa 99.3 1.5E-09 5.3E-14 108.6 30.4 220 282-505 33-271 (308)
68 4abn_A Tetratricopeptide repea 99.3 1.3E-10 4.5E-15 123.8 22.9 212 421-652 84-318 (474)
69 3vtx_A MAMA; tetratricopeptide 99.3 5E-10 1.7E-14 102.6 23.4 164 371-538 6-169 (184)
70 3ulq_A Response regulator aspa 99.3 1.8E-10 6.2E-15 119.4 21.4 290 275-569 22-363 (383)
71 3vtx_A MAMA; tetratricopeptide 99.3 9.2E-10 3.2E-14 100.8 23.6 166 335-504 5-170 (184)
72 3nf1_A KLC 1, kinesin light ch 99.3 2.3E-11 7.9E-16 121.7 13.6 135 263-397 25-180 (311)
73 3nf1_A KLC 1, kinesin light ch 99.3 2.4E-11 8.3E-16 121.5 13.4 240 298-538 25-306 (311)
74 4abn_A Tetratricopeptide repea 99.3 3.5E-10 1.2E-14 120.5 23.0 212 351-569 84-316 (474)
75 3q15_A PSP28, response regulat 99.2 7.1E-10 2.4E-14 114.7 22.8 233 411-654 107-364 (378)
76 1hz4_A MALT regulatory protein 99.2 7.1E-09 2.4E-13 106.8 28.9 204 409-619 97-321 (373)
77 3q15_A PSP28, response regulat 99.2 4.3E-09 1.5E-13 108.7 26.6 304 264-571 9-362 (378)
78 1hz4_A MALT regulatory protein 99.2 8.5E-09 2.9E-13 106.2 28.0 162 271-432 20-201 (373)
79 3as5_A MAMA; tetratricopeptide 99.1 4.4E-09 1.5E-13 95.8 20.9 127 408-537 45-171 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.1 2E-09 6.8E-14 119.6 21.3 164 474-654 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.1 6.8E-09 2.3E-13 94.5 21.2 161 339-503 12-172 (186)
82 4i17_A Hypothetical protein; T 99.1 2.3E-08 7.7E-13 95.0 22.9 195 333-539 5-209 (228)
83 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.8E-14 107.5 13.9 177 474-655 42-281 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.1 6.7E-09 2.3E-13 115.3 21.3 164 335-502 9-172 (723)
85 4i17_A Hypothetical protein; T 99.1 2.6E-08 8.8E-13 94.6 22.6 206 298-515 5-219 (228)
86 3edt_B KLC 2, kinesin light ch 99.0 2.6E-09 8.8E-14 104.9 13.3 156 277-432 13-196 (283)
87 3mv2_B Coatomer subunit epsilo 98.9 6E-07 2.1E-11 87.5 26.5 199 459-677 85-302 (310)
88 3mv2_B Coatomer subunit epsilo 98.9 2.4E-07 8.4E-12 90.2 23.0 241 275-539 23-282 (310)
89 1qqe_A Vesicular transport pro 98.9 4E-08 1.4E-12 97.3 17.5 166 441-619 78-268 (292)
90 2fo7_A Synthetic consensus TPR 98.9 1.2E-07 4.2E-12 80.8 17.6 127 373-502 4-130 (136)
91 1qqe_A Vesicular transport pro 98.9 1.1E-07 3.7E-12 94.2 19.6 56 272-327 44-104 (292)
92 2fo7_A Synthetic consensus TPR 98.8 2.1E-07 7.2E-12 79.3 17.8 127 409-538 5-131 (136)
93 3urz_A Uncharacterized protein 98.8 1.2E-07 4.2E-12 88.5 17.2 111 443-556 7-133 (208)
94 3urz_A Uncharacterized protein 98.8 1.3E-07 4.3E-12 88.4 16.9 172 479-669 8-198 (208)
95 3qky_A Outer membrane assembly 98.8 2.1E-07 7.2E-12 90.4 18.9 171 473-661 13-228 (261)
96 2uy1_A Cleavage stimulation fa 98.8 2.6E-05 9E-10 82.8 34.8 345 279-654 28-412 (493)
97 3qky_A Outer membrane assembly 98.8 4.9E-07 1.7E-11 87.7 19.6 100 299-399 14-126 (261)
98 3rjv_A Putative SEL1 repeat pr 98.7 1.3E-06 4.3E-11 81.8 20.9 175 319-505 5-198 (212)
99 2pzi_A Probable serine/threoni 98.7 8.6E-08 2.9E-12 106.8 14.8 149 416-569 402-558 (681)
100 3rjv_A Putative SEL1 repeat pr 98.7 2E-06 6.7E-11 80.5 21.5 178 352-541 3-199 (212)
101 3dra_A Protein farnesyltransfe 98.7 9.4E-06 3.2E-10 79.8 26.0 169 280-454 48-234 (306)
102 3dra_A Protein farnesyltransfe 98.7 2E-05 6.9E-10 77.5 27.9 222 313-539 46-287 (306)
103 2r5s_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 83.1 14.0 159 478-654 9-172 (176)
104 2ifu_A Gamma-SNAP; membrane fu 98.7 4.9E-07 1.7E-11 90.2 16.5 160 476-647 77-253 (307)
105 2uy1_A Cleavage stimulation fa 98.6 9.6E-05 3.3E-09 78.5 34.8 353 195-569 17-408 (493)
106 2pzi_A Probable serine/threoni 98.6 3.2E-07 1.1E-11 102.3 16.3 173 381-560 402-583 (681)
107 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.2E-06 1.1E-10 79.8 20.7 187 334-540 3-214 (225)
108 3qou_A Protein YBBN; thioredox 98.6 7.6E-07 2.6E-11 87.8 16.8 63 300-363 117-179 (287)
109 2ifu_A Gamma-SNAP; membrane fu 98.6 1.3E-06 4.5E-11 87.0 18.7 123 441-566 117-253 (307)
110 2r5s_A Uncharacterized protein 98.6 4.8E-07 1.6E-11 81.9 13.9 78 424-502 93-171 (176)
111 3qou_A Protein YBBN; thioredox 98.6 1.1E-06 3.9E-11 86.4 17.6 161 405-569 117-279 (287)
112 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.9E-06 1.3E-10 79.2 20.4 186 299-505 3-214 (225)
113 4ga2_A E3 SUMO-protein ligase 98.6 1.6E-07 5.6E-12 82.4 9.7 82 410-493 36-117 (150)
114 2qfc_A PLCR protein; TPR, HTH, 98.6 9.6E-06 3.3E-10 80.1 23.7 171 476-654 76-265 (293)
115 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.7E-11 96.0 18.4 153 313-469 2-157 (568)
116 4ga2_A E3 SUMO-protein ligase 98.6 1.6E-07 5.5E-12 82.5 9.5 145 412-560 4-149 (150)
117 2vsy_A XCC0866; transferase, g 98.6 1.6E-06 5.4E-11 94.7 19.1 154 348-505 2-158 (568)
118 3u3w_A Transcriptional activat 98.5 4E-05 1.4E-09 75.5 26.9 211 429-654 35-265 (293)
119 3u3w_A Transcriptional activat 98.5 5E-05 1.7E-09 74.8 25.3 166 447-619 82-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.2E-05 4E-10 74.9 19.2 129 268-401 9-152 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.2E-05 4.2E-10 74.8 18.7 121 413-539 14-150 (213)
122 2qfc_A PLCR protein; TPR, HTH, 98.4 8E-05 2.7E-09 73.3 24.4 160 410-569 80-261 (293)
123 3gyz_A Chaperone protein IPGC; 98.4 3E-06 1E-10 74.1 12.2 112 541-669 31-145 (151)
124 3q7a_A Farnesyltransferase alp 98.4 0.00027 9.1E-09 70.2 27.5 217 318-539 72-331 (349)
125 1a17_A Serine/threonine protei 98.4 1.4E-05 4.9E-10 70.7 17.0 61 477-538 49-109 (166)
126 1na0_A Designed protein CTPR3; 98.4 1.7E-05 5.9E-10 66.1 16.2 26 477-502 79-104 (125)
127 3gw4_A Uncharacterized protein 98.4 7.1E-06 2.4E-10 75.6 14.9 160 452-619 4-175 (203)
128 3q7a_A Farnesyltransferase alp 98.4 0.00019 6.6E-09 71.2 25.8 236 277-517 66-344 (349)
129 4gco_A Protein STI-1; structur 98.3 1.4E-05 4.9E-10 67.4 15.1 61 477-538 49-109 (126)
130 1a17_A Serine/threonine protei 98.3 2.1E-05 7.2E-10 69.6 17.0 94 373-468 16-109 (166)
131 1na0_A Designed protein CTPR3; 98.3 2.2E-05 7.5E-10 65.4 16.2 116 440-558 9-124 (125)
132 4gco_A Protein STI-1; structur 98.3 2.1E-05 7.2E-10 66.4 15.2 108 406-516 14-121 (126)
133 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.1E-10 67.0 14.7 95 407-503 18-112 (133)
134 3gw4_A Uncharacterized protein 98.3 8.3E-06 2.8E-10 75.2 13.2 24 478-501 110-133 (203)
135 2c2l_A CHIP, carboxy terminus 98.3 7.2E-06 2.5E-10 80.4 13.3 94 301-396 5-98 (281)
136 2vyi_A SGTA protein; chaperone 98.3 2E-05 7E-10 66.2 14.4 61 477-538 48-108 (131)
137 2c2l_A CHIP, carboxy terminus 98.3 1.5E-05 5.3E-10 78.0 15.4 195 438-654 2-198 (281)
138 2vyi_A SGTA protein; chaperone 98.3 2.7E-05 9.2E-10 65.5 15.1 120 404-526 11-130 (131)
139 4f3v_A ESX-1 secretion system 98.3 2.7E-05 9.2E-10 74.8 16.3 189 453-660 19-240 (282)
140 2lni_A Stress-induced-phosphop 98.2 2.2E-05 7.4E-10 66.4 13.5 120 437-559 13-132 (133)
141 2e2e_A Formate-dependent nitri 98.2 1E-05 3.6E-10 72.8 11.9 119 418-539 23-144 (177)
142 1p5q_A FKBP52, FK506-binding p 98.2 3.4E-05 1.2E-09 77.7 16.7 32 334-365 146-177 (336)
143 4f3v_A ESX-1 secretion system 98.2 5.8E-05 2E-09 72.5 16.4 188 277-469 18-237 (282)
144 4gcn_A Protein STI-1; structur 98.2 1.2E-05 4.1E-10 68.0 10.6 109 546-669 9-124 (127)
145 3gyz_A Chaperone protein IPGC; 98.1 2.6E-05 9E-10 68.0 12.8 97 441-539 37-133 (151)
146 1p5q_A FKBP52, FK506-binding p 98.1 5.2E-05 1.8E-09 76.3 16.8 31 369-399 146-176 (336)
147 4b4t_Q 26S proteasome regulato 98.1 0.00035 1.2E-08 72.9 23.4 162 408-569 58-240 (434)
148 3dss_A Geranylgeranyl transfer 98.1 0.0028 9.6E-08 62.6 28.1 194 421-624 90-306 (331)
149 3dss_A Geranylgeranyl transfer 98.1 0.0019 6.4E-08 63.9 26.7 136 277-417 41-191 (331)
150 2e2e_A Formate-dependent nitri 98.1 2E-05 7E-10 70.9 11.8 118 384-504 24-144 (177)
151 2vgx_A Chaperone SYCD; alterna 98.1 2.2E-05 7.4E-10 68.5 11.5 99 439-539 20-118 (148)
152 2vgx_A Chaperone SYCD; alterna 98.1 1.5E-05 5.1E-10 69.5 10.1 105 462-569 9-113 (148)
153 1elw_A TPR1-domain of HOP; HOP 98.1 0.00014 4.8E-09 59.6 15.4 26 477-502 74-99 (118)
154 1elw_A TPR1-domain of HOP; HOP 98.0 0.00019 6.4E-09 58.8 15.7 110 440-552 4-113 (118)
155 3upv_A Heat shock protein STI1 98.0 0.00012 4E-09 61.5 14.3 94 443-538 7-100 (126)
156 1elr_A TPR2A-domain of HOP; HO 98.0 8.6E-05 2.9E-09 62.3 13.2 119 545-677 4-128 (131)
157 4b4t_Q 26S proteasome regulato 98.0 0.00024 8.3E-09 74.1 19.4 170 478-654 58-244 (434)
158 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00012 4.3E-09 67.1 14.9 60 407-467 90-149 (198)
159 3upv_A Heat shock protein STI1 98.0 0.00024 8.2E-09 59.5 15.4 96 407-504 6-101 (126)
160 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00011 3.9E-09 67.3 14.5 88 441-530 89-176 (198)
161 1elr_A TPR2A-domain of HOP; HO 98.0 8E-05 2.7E-09 62.5 12.2 96 443-539 7-108 (131)
162 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00016 5.4E-09 64.0 14.7 98 440-539 11-108 (164)
163 4gcn_A Protein STI-1; structur 98.0 0.00016 5.5E-09 60.9 13.8 61 302-363 10-70 (127)
164 3q49_B STIP1 homology and U bo 97.9 0.00047 1.6E-08 58.5 16.7 94 474-569 8-101 (137)
165 2dba_A Smooth muscle cell asso 97.9 0.00035 1.2E-08 60.1 15.9 59 444-503 69-127 (148)
166 3ro3_A PINS homolog, G-protein 97.9 0.0001 3.4E-09 64.5 12.5 136 477-619 11-157 (164)
167 2kck_A TPR repeat; tetratricop 97.9 9.5E-05 3.2E-09 60.1 11.4 95 443-539 9-106 (112)
168 2xcb_A PCRH, regulatory protei 97.9 8.8E-05 3E-09 63.9 11.7 86 415-502 28-113 (142)
169 3rkv_A Putative peptidylprolyl 97.9 0.00035 1.2E-08 61.6 15.9 110 545-662 11-131 (162)
170 3q49_B STIP1 homology and U bo 97.9 0.00026 8.7E-09 60.2 14.4 99 438-538 7-105 (137)
171 2dba_A Smooth muscle cell asso 97.9 0.00048 1.6E-08 59.2 16.3 113 438-554 26-142 (148)
172 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00023 8E-09 62.9 14.5 97 301-399 12-108 (164)
173 2xcb_A PCRH, regulatory protei 97.9 0.00016 5.6E-09 62.2 12.9 95 442-538 20-114 (142)
174 2kck_A TPR repeat; tetratricop 97.9 0.00015 5.2E-09 58.8 11.9 92 305-398 11-105 (112)
175 2xev_A YBGF; tetratricopeptide 97.9 0.00015 5.2E-09 60.9 12.1 110 549-675 6-123 (129)
176 3ro3_A PINS homolog, G-protein 97.8 0.00014 4.9E-09 63.5 11.5 131 266-396 10-155 (164)
177 1wao_1 Serine/threonine protei 97.8 0.00012 4.2E-09 77.5 12.8 119 378-499 14-134 (477)
178 2hr2_A Hypothetical protein; a 97.8 0.00057 1.9E-08 59.2 13.9 100 514-619 15-130 (159)
179 1hxi_A PEX5, peroxisome target 97.8 0.00027 9.1E-09 58.9 11.7 89 272-362 24-112 (121)
180 1hxi_A PEX5, peroxisome target 97.7 0.0003 1E-08 58.6 11.3 89 448-538 25-113 (121)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0004 1.4E-08 73.1 14.4 29 335-363 268-296 (457)
182 2hr2_A Hypothetical protein; a 97.7 0.001 3.5E-08 57.6 14.0 119 546-669 12-150 (159)
183 3n71_A Histone lysine methyltr 97.6 0.00035 1.2E-08 73.6 13.0 132 519-655 318-464 (490)
184 2xev_A YBGF; tetratricopeptide 97.6 0.0016 5.5E-08 54.4 15.0 62 442-504 41-105 (129)
185 3n71_A Histone lysine methyltr 97.6 0.0003 1E-08 74.1 11.9 131 484-619 318-463 (490)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00077 2.6E-08 70.9 14.8 29 370-398 268-296 (457)
187 1ihg_A Cyclophilin 40; ppiase 97.6 0.00068 2.3E-08 69.0 13.9 29 370-398 223-251 (370)
188 1wao_1 Serine/threonine protei 97.6 0.00023 7.8E-09 75.4 10.5 115 451-568 17-133 (477)
189 3k9i_A BH0479 protein; putativ 97.6 0.0001 3.5E-09 61.0 6.1 106 558-677 3-110 (117)
190 3rkv_A Putative peptidylprolyl 97.6 0.00086 2.9E-08 59.0 12.5 65 474-539 62-126 (162)
191 1ihg_A Cyclophilin 40; ppiase 97.5 0.00079 2.7E-08 68.5 13.7 140 405-566 223-362 (370)
192 3k9i_A BH0479 protein; putativ 97.5 0.00016 5.6E-09 59.8 7.1 86 453-539 3-90 (117)
193 1zu2_A Mitochondrial import re 97.5 0.00027 9.3E-09 61.0 7.7 123 521-655 13-147 (158)
194 1dce_A Protein (RAB geranylger 97.5 0.0063 2.2E-07 65.5 20.2 170 352-526 46-242 (567)
195 1dce_A Protein (RAB geranylger 97.4 0.0064 2.2E-07 65.5 19.6 175 384-563 43-244 (567)
196 1klx_A Cysteine rich protein B 97.4 0.0053 1.8E-07 52.3 15.1 111 279-400 9-127 (138)
197 1klx_A Cysteine rich protein B 97.4 0.0065 2.2E-07 51.7 15.6 110 420-540 10-127 (138)
198 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00046 1.6E-08 69.4 9.2 147 267-434 181-328 (338)
199 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00054 1.9E-08 68.9 8.5 150 369-539 178-328 (338)
200 2l6j_A TPR repeat-containing p 97.3 0.00056 1.9E-08 55.4 6.9 91 474-567 3-100 (111)
201 2kat_A Uncharacterized protein 97.1 0.0046 1.6E-07 50.5 11.2 100 575-676 4-104 (115)
202 1na3_A Designed protein CTPR2; 97.1 0.0068 2.3E-07 46.6 11.2 81 475-557 9-89 (91)
203 2kat_A Uncharacterized protein 97.0 0.0054 1.9E-07 50.0 10.7 78 459-538 4-81 (115)
204 1na3_A Designed protein CTPR2; 96.9 0.0087 3E-07 46.0 10.9 79 441-521 10-88 (91)
205 1zu2_A Mitochondrial import re 96.9 0.003 1E-07 54.5 8.1 93 454-550 16-129 (158)
206 2l6j_A TPR repeat-containing p 96.9 0.0037 1.3E-07 50.4 8.4 63 441-504 5-67 (111)
207 3ma5_A Tetratricopeptide repea 96.8 0.0054 1.8E-07 48.7 8.8 64 474-538 6-69 (100)
208 3ma5_A Tetratricopeptide repea 96.7 0.0063 2.2E-07 48.3 8.6 82 590-673 6-89 (100)
209 3ly7_A Transcriptional activat 96.7 0.11 3.7E-06 51.6 18.7 170 167-373 168-346 (372)
210 3qww_A SET and MYND domain-con 96.7 0.009 3.1E-07 61.7 11.2 93 522-619 310-410 (433)
211 3qwp_A SET and MYND domain-con 96.5 0.021 7.2E-07 59.0 13.2 98 517-619 294-399 (429)
212 1pc2_A Mitochondria fission pr 96.5 0.026 8.9E-07 48.1 10.9 97 574-674 16-117 (152)
213 3mkq_A Coatomer beta'-subunit; 96.4 0.2 7E-06 56.5 21.6 98 450-568 662-759 (814)
214 3qww_A SET and MYND domain-con 96.4 0.0065 2.2E-07 62.7 8.2 93 557-654 310-410 (433)
215 3bee_A Putative YFRE protein; 96.2 0.025 8.6E-07 44.1 8.7 83 589-675 4-90 (93)
216 3ly7_A Transcriptional activat 96.1 0.12 4E-06 51.3 15.1 76 588-667 274-349 (372)
217 3mkq_A Coatomer beta'-subunit; 96.1 0.31 1.1E-05 55.0 21.2 97 276-396 610-707 (814)
218 3qwp_A SET and MYND domain-con 96.1 0.033 1.1E-06 57.5 11.5 98 482-583 294-405 (429)
219 3u64_A Protein TP_0956; tetrat 95.9 0.061 2.1E-06 51.1 11.3 91 573-667 180-283 (301)
220 2kc7_A BFR218_protein; tetratr 95.8 0.041 1.4E-06 43.0 8.6 77 597-677 6-87 (99)
221 2kc7_A BFR218_protein; tetratr 95.5 0.078 2.7E-06 41.4 9.2 57 482-539 7-64 (99)
222 2v5f_A Prolyl 4-hydroxylase su 95.3 0.12 4.1E-06 41.1 9.8 73 590-664 4-82 (104)
223 3mkq_B Coatomer subunit alpha; 95.1 1.4 4.7E-05 38.5 16.2 101 275-396 15-115 (177)
224 1wy6_A Hypothetical protein ST 95.1 1.2 4E-05 36.6 15.3 140 486-658 18-157 (172)
225 1wy6_A Hypothetical protein ST 94.5 1.6 5.3E-05 35.9 13.7 68 474-542 90-157 (172)
226 3mkq_B Coatomer subunit alpha; 94.4 1.5 5.3E-05 38.2 14.9 101 309-430 14-114 (177)
227 3bee_A Putative YFRE protein; 94.2 0.77 2.6E-05 35.4 11.5 66 473-539 4-72 (93)
228 1nzn_A CGI-135 protein, fissio 93.7 0.34 1.2E-05 39.6 8.8 91 578-672 23-118 (126)
229 1pc2_A Mitochondria fission pr 93.7 0.41 1.4E-05 40.7 9.6 80 353-434 16-100 (152)
230 2ff4_A Probable regulatory pro 93.6 1.3 4.6E-05 44.7 15.2 79 593-672 173-256 (388)
231 2v5f_A Prolyl 4-hydroxylase su 93.3 0.85 2.9E-05 35.9 10.6 21 340-360 10-30 (104)
232 3u64_A Protein TP_0956; tetrat 91.3 1.7 5.9E-05 41.3 11.3 84 317-402 180-272 (301)
233 2wpv_A GET4, UPF0363 protein Y 90.9 12 0.00041 36.1 18.1 124 175-323 25-157 (312)
234 1y8m_A FIS1; mitochondria, unk 90.6 6.1 0.00021 32.8 12.6 84 587-672 35-121 (144)
235 3o48_A Mitochondria fission 1 90.4 2.3 7.7E-05 34.9 9.7 85 586-672 35-122 (134)
236 1nzn_A CGI-135 protein, fissio 89.7 1.2 4.1E-05 36.3 7.6 67 368-434 33-103 (126)
237 4gns_B Protein CSD3, chitin bi 89.7 4.5 0.00015 44.4 14.5 54 598-653 344-398 (754)
238 4fhn_B Nucleoporin NUP120; pro 89.5 7.5 0.00026 45.5 17.4 165 170-353 819-989 (1139)
239 3lvg_A Clathrin heavy chain 1; 89.3 0.012 4.1E-07 59.6 -5.5 210 165-393 56-285 (624)
240 4h7y_A Dual specificity protei 89.2 3.1 0.00011 34.9 9.7 64 487-552 72-135 (161)
241 4h7y_A Dual specificity protei 88.6 3.3 0.00011 34.8 9.5 102 299-402 12-126 (161)
242 4ady_A RPN2, 26S proteasome re 86.9 45 0.0015 37.5 25.6 270 275-556 384-672 (963)
243 4b4t_P 26S proteasome regulato 85.4 35 0.0012 34.9 20.3 93 477-569 139-242 (445)
244 2ff4_A Probable regulatory pro 85.4 3.7 0.00012 41.4 10.1 71 478-549 174-249 (388)
245 4fhn_B Nucleoporin NUP120; pro 85.3 14 0.00047 43.3 16.3 149 411-566 818-992 (1139)
246 1v54_E Cytochrome C oxidase po 85.1 8.9 0.0003 29.6 9.3 68 606-674 25-92 (109)
247 4gns_B Protein CSD3, chitin bi 84.7 3.2 0.00011 45.5 9.7 52 587-640 609-660 (754)
248 3ffl_A Anaphase-promoting comp 83.2 9.4 0.00032 32.7 9.9 53 517-569 27-87 (167)
249 2y69_E Cytochrome C oxidase su 80.4 14 0.00048 30.2 9.3 67 607-674 69-135 (152)
250 3lvg_A Clathrin heavy chain 1; 79.5 5.1E-05 1.7E-09 76.4 -27.4 212 265-498 54-285 (624)
251 3o48_A Mitochondria fission 1 78.4 21 0.00072 29.2 10.0 76 540-625 35-110 (134)
252 4b4t_P 26S proteasome regulato 77.5 66 0.0023 32.8 21.0 101 512-619 139-246 (445)
253 3lpz_A GET4 (YOR164C homolog); 77.3 55 0.0019 31.7 20.8 111 373-498 38-159 (336)
254 1v54_E Cytochrome C oxidase po 76.5 13 0.00043 28.8 7.5 47 493-539 28-74 (109)
255 2uwj_G Type III export protein 73.2 29 0.001 26.6 11.2 80 139-223 18-98 (115)
256 2p58_C Putative type III secre 73.1 29 0.001 26.6 10.7 80 139-223 19-99 (116)
257 1y8m_A FIS1; mitochondria, unk 73.0 39 0.0013 28.0 12.3 74 542-625 36-109 (144)
258 3esl_A Checkpoint serine/threo 72.4 40 0.0014 29.9 11.0 79 593-672 82-161 (202)
259 2qx5_A Nucleoporin NIC96; mRNA 67.7 1.4E+02 0.0047 32.2 18.3 80 411-501 300-382 (661)
260 2y69_E Cytochrome C oxidase su 67.1 24 0.00081 28.9 7.5 47 493-539 71-117 (152)
261 4b4t_R RPN7, 26S proteasome re 64.8 44 0.0015 33.9 11.5 25 304-328 135-159 (429)
262 1zbp_A Hypothetical protein VP 63.6 16 0.00054 34.1 6.9 55 484-539 6-60 (273)
263 3eiq_C Programmed cell death p 62.6 93 0.0032 30.5 12.6 81 593-674 219-301 (358)
264 3ffl_A Anaphase-promoting comp 62.6 49 0.0017 28.2 9.2 57 272-328 27-91 (167)
265 3lpz_A GET4 (YOR164C homolog); 62.1 1.2E+02 0.004 29.4 23.4 112 166-288 38-159 (336)
266 4b4t_R RPN7, 26S proteasome re 59.8 56 0.0019 33.1 11.1 59 338-396 134-194 (429)
267 3eiq_C Programmed cell death p 59.4 1.1E+02 0.0038 29.9 12.5 26 268-293 57-82 (358)
268 4ady_A RPN2, 26S proteasome re 52.3 3E+02 0.01 31.0 38.6 96 194-293 146-258 (963)
269 2p58_C Putative type III secre 51.8 80 0.0027 24.3 8.0 50 450-505 50-99 (116)
270 3esl_A Checkpoint serine/threo 51.4 1.2E+02 0.004 26.9 10.0 55 454-508 93-148 (202)
271 2lkw_A Membrane fusion protein 50.7 5.8 0.0002 20.7 0.9 15 3-17 8-22 (26)
272 2nsz_A Programmed cell death p 50.1 1E+02 0.0034 25.0 9.0 68 478-546 10-79 (129)
273 4a1g_A Mitotic checkpoint seri 49.9 1.1E+02 0.0039 25.6 9.5 59 608-666 82-141 (152)
274 2wpv_A GET4, UPF0363 protein Y 49.6 1.8E+02 0.0062 27.8 23.2 168 165-362 35-215 (312)
275 2uwj_G Type III export protein 49.4 78 0.0027 24.3 7.2 50 450-505 49-98 (115)
276 2zu6_B Programmed cell death p 45.5 2.1E+02 0.0071 27.3 12.7 79 593-672 168-248 (307)
277 2r9g_A AAA ATPase, central reg 45.0 1.6E+02 0.0055 25.9 10.3 58 277-335 26-88 (204)
278 2bn5_B U1 small nuclear ribonu 44.7 12 0.00041 19.5 1.5 10 1-10 9-18 (26)
279 1k1a_A B-cell lymphoma 3-encod 44.6 35 0.0012 30.8 6.2 86 199-290 12-101 (241)
280 1wdy_A 2-5A-dependent ribonucl 44.2 24 0.00082 32.9 5.1 9 486-494 227-235 (285)
281 1wdy_A 2-5A-dependent ribonucl 43.0 39 0.0013 31.3 6.5 18 198-215 7-24 (285)
282 2ion_A PDCD4, programmed cell 42.9 85 0.0029 26.3 7.7 67 478-545 12-80 (152)
283 4a1g_A Mitotic checkpoint seri 41.7 63 0.0021 27.2 6.5 51 575-625 84-135 (152)
284 1wa7_B TIP, hypothetical 28.7 41.5 11 0.00039 20.1 1.1 9 4-12 5-13 (26)
285 4gq2_M Nucleoporin NUP120; bet 41.4 97 0.0033 35.2 10.3 110 169-293 816-925 (950)
286 3ctd_A Putative ATPase, AAA fa 39.6 2E+02 0.0069 25.5 9.7 68 267-334 34-109 (213)
287 2wvi_A Mitotic checkpoint seri 39.4 73 0.0025 27.2 6.7 47 578-624 82-129 (164)
288 2wvi_A Mitotic checkpoint seri 39.2 1.8E+02 0.0061 24.7 10.6 63 608-670 77-140 (164)
289 1bpo_A Protein (clathrin); cla 37.4 3.4E+02 0.012 27.5 12.6 99 140-243 342-444 (494)
290 2zu6_B Programmed cell death p 37.0 1.7E+02 0.0057 28.0 9.6 67 408-475 169-237 (307)
291 3bge_A Predicted ATPase; struc 36.7 2.1E+02 0.0071 25.1 9.1 38 277-314 19-56 (201)
292 3mv2_A Coatomer subunit alpha; 35.4 3E+02 0.01 26.3 12.9 55 606-660 185-241 (325)
293 1qsa_A Protein (soluble lytic 35.1 4.4E+02 0.015 28.0 42.3 272 148-433 57-347 (618)
294 3l6a_A Eukaryotic translation 34.6 3.4E+02 0.012 26.6 11.7 26 195-220 14-39 (364)
295 3d5l_A Regulatory protein RECX 34.0 2.6E+02 0.0089 25.1 10.7 50 317-367 93-142 (221)
296 3eu9_A Huntingtin-interacting 33.0 29 0.00098 31.3 3.5 13 203-215 16-28 (240)
297 2ion_A PDCD4, programmed cell 32.8 2.2E+02 0.0074 23.8 8.9 64 268-332 12-77 (152)
298 2d2s_A Exocyst complex compone 32.6 2.8E+02 0.0097 25.1 12.6 24 198-221 23-46 (235)
299 3txn_A 26S proteasome regulato 31.1 4E+02 0.014 26.4 28.2 93 375-467 104-208 (394)
300 4aez_C MAD3, mitotic spindle c 30.0 2.4E+02 0.008 25.4 8.7 66 608-673 131-197 (223)
301 1dm5_A Annexin XII E105K mutan 28.5 3.9E+02 0.013 25.4 11.0 81 210-295 16-101 (315)
302 4aez_C MAD3, mitotic spindle c 28.5 1E+02 0.0035 27.8 6.0 51 575-625 133-184 (223)
303 3mkr_B Coatomer subunit alpha; 27.1 4.2E+02 0.014 25.3 11.2 46 611-656 181-228 (320)
304 2r9g_A AAA ATPase, central reg 27.0 3.2E+02 0.011 24.0 9.3 17 454-470 28-44 (204)
305 2xig_A Ferric uptake regulatio 26.3 2.6E+02 0.0089 23.1 8.1 59 360-419 17-75 (150)
306 2nsz_A Programmed cell death p 26.2 2.6E+02 0.0087 22.5 10.2 65 268-333 10-76 (129)
307 3t8k_A Uncharacterized protein 26.1 1.2E+02 0.004 26.3 6.1 30 199-228 41-70 (186)
308 3eu9_A Huntingtin-interacting 26.0 45 0.0015 29.9 3.5 13 271-283 45-57 (240)
309 1zbp_A Hypothetical protein VP 25.9 4E+02 0.014 24.7 14.9 54 345-399 7-60 (273)
310 3txn_A 26S proteasome regulato 25.3 5.1E+02 0.017 25.6 24.7 131 336-467 20-166 (394)
311 3kea_A K1L; tropism, ANK repea 24.3 85 0.0029 29.4 5.2 14 203-216 38-51 (285)
312 1oxz_A ADP-ribosylation factor 23.6 2.9E+02 0.01 24.0 7.8 16 660-675 105-120 (186)
313 2qx5_A Nucleoporin NIC96; mRNA 23.3 7.1E+02 0.024 26.6 13.3 81 199-292 300-383 (661)
314 3ltm_A Alpha-REP4; protein eng 23.1 3.6E+02 0.012 23.2 19.1 17 369-385 94-110 (211)
315 4g8k_A 2-5A-dependent ribonucl 23.0 2.7E+02 0.0091 26.4 8.8 287 197-512 26-331 (337)
316 3pvs_A Replication-associated 22.6 6E+02 0.021 25.5 14.1 106 191-314 192-304 (447)
317 3bge_A Predicted ATPase; struc 22.5 3.3E+02 0.011 23.8 7.9 16 455-470 22-37 (201)
318 3jxi_A Vanilloid receptor-rela 22.4 40 0.0014 31.0 2.4 31 199-229 8-38 (260)
319 1o9d_A 14-3-3-like protein C; 21.8 4.7E+02 0.016 24.1 11.2 60 373-432 11-73 (260)
320 2d2s_A Exocyst complex compone 21.6 4.5E+02 0.015 23.7 11.9 110 482-596 25-140 (235)
321 3ctd_A Putative ATPase, AAA fa 21.2 4.3E+02 0.015 23.4 8.7 20 454-473 49-68 (213)
322 3ltm_A Alpha-REP4; protein eng 21.2 4E+02 0.014 22.9 18.6 49 333-385 31-79 (211)
323 4b4t_S RPN3, 26S proteasome re 21.0 4.3E+02 0.015 27.2 9.8 65 440-504 231-299 (523)
324 1k1a_A B-cell lymphoma 3-encod 20.9 1E+02 0.0036 27.5 5.0 25 273-297 14-38 (241)
325 2f6m_A Suppressor protein STP2 20.6 1.6E+02 0.0054 20.5 4.4 45 478-523 5-49 (65)
326 4gq2_M Nucleoporin NUP120; bet 20.6 6.7E+02 0.023 28.3 12.4 49 516-569 816-864 (950)
327 2fe3_A Peroxide operon regulat 20.4 2.7E+02 0.0091 22.8 6.9 58 361-419 13-70 (145)
328 3e3v_A Regulatory protein RECX 20.1 4.1E+02 0.014 22.7 9.6 125 286-431 37-163 (177)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-38 Score=347.30 Aligned_cols=485 Identities=11% Similarity=0.008 Sum_probs=344.1
Q ss_pred HHHHHHHHHHhcccCCHHHHHHh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 005729 163 ELLYSILIHALGRSEKLYEAFLL---SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT 239 (680)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 239 (680)
...++.++..|.+.|++++|+.+ .....|+..+|+.++.+|.+.|++++|+.+|+++... .++..+++.++.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence 34445555555555555555443 1112234444555555555555555555555544322 344445555555555
Q ss_pred hcCCCChHHHHHHHHHHH-hC--------------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005729 240 RTNKIDSSLLQKLYKEIE-CD--------------KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYA 304 (680)
Q Consensus 240 ~~g~~~~~~~~~l~~~~~-~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 304 (680)
+.|++++ +..+|+++. .. +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+.
T Consensus 162 ~~g~~~~--A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 162 KLYDWQG--ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HTTCHHH--HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHhhHHH--HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 5555432 224444211 11 112234455555555555555555555555544432 11223333
Q ss_pred HHHHHHHhcCChHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 305 AVITALSNSGRTIEAE--AV-FEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA 381 (680)
Q Consensus 305 ~li~~~~~~g~~~~A~--~l-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 381 (680)
.+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 3333222221111111 01 222322222233344555677788899999999999999875 579999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 005729 382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA 461 (680)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 461 (680)
+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999987763 477889999999999999999999999998654 6678999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL 541 (680)
Q Consensus 462 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 541 (680)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998754 4568899999999999999999999999999876 6688999999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+.+..+|+.++..|.+.|++++|.++|+...+ ...+.+..|+ ..+|..++.+|.+.|++++|.++++++.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALL-------LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34789999999999999999999988763322 2223367788 67999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 005729 620 NGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDR-KARAMLRS 669 (680)
Q Consensus 620 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~ 669 (680)
.+ +.+..+|..++.+|.+.|++++|.++++++++. .|+. ..+..+..
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKR 592 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 54 347899999999999999999999999999985 5554 44444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-36 Score=331.53 Aligned_cols=481 Identities=11% Similarity=0.017 Sum_probs=401.3
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-h--CCCCCCHHHHHHHHHHHH
Q 005729 128 LWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-S--QRQRLTPLTYNALISACA 204 (680)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~--~~~~~~~~~~~~li~~~~ 204 (680)
.|..++..+. ..++++.|..+|..+.+.. |+ ...+..++.+|.+.|++++|... . ...++++.+|+.++..|.
T Consensus 86 ~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 86 YLRLWRHDAL-MQQQYKCAAFVGEKVLDIT--GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHH--CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HccCchHHHHHHHHHHhhC--CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 3455555544 5689999999999998765 43 46788899999999999999987 2 225788999999999999
Q ss_pred HcCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHH
Q 005729 205 RNDDLEKALNLMSKMRQD---------------GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLN 269 (680)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (680)
+.|++++|+.+|+++... |...+..+|+.+..++.+.|+++. +..+|+++.+.+ +.+...+.
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR--AKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-chhhHHHH
Confidence 999999999999954322 234468899999999999999855 569999998754 33566667
Q ss_pred HHHHHHHHcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 270 DVIVGFAKAGDASKAMR--F-LGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (680)
Q Consensus 270 ~li~~~~~~g~~~~A~~--~-~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 346 (680)
.+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 66665554433332221 1 455555444455667888899999999999999999999876 579999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ 426 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 426 (680)
+.|++++|.++|+++.+.+. .+..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999997653 377889999999999999999999999998654 5678899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005729 427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (680)
Q Consensus 427 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (680)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998754 5578899999999999999999999999999875 4578899999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHH
Q 005729 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLPN--VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFR 580 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~ 580 (680)
+.+..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.+.++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------- 540 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN----------- 540 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH-----------
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH-----------
Confidence 568999999999999999999999999999876 66787 7899999999999999999988765
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005729 581 VMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKAL 636 (680)
Q Consensus 581 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~ 636 (680)
++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+ +.| +...+..+..+|
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 333322 34678999999999999999999999999998 455 566776666654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.8e-29 Score=266.81 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=172.9
Q ss_pred HHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hHHH
Q 005729 250 QKLYKEIECDKIELD-GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR---------TIEA 319 (680)
Q Consensus 250 ~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~---------~~~A 319 (680)
+.+...+.+.+.... ..+++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 455666666665544 346788899999999999999999999999999999999999999987665 6789
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 320 EAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 320 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
.++|++|.+.|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 400 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
|+.||..+|+.+|.+|++.|++++|.++|++|++.|+.|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.7e-29 Score=263.65 Aligned_cols=205 Identities=16% Similarity=0.214 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HH
Q 005729 318 EAEAVFEELKESGLKPRT-KAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR---------WE 387 (680)
Q Consensus 318 ~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~ 387 (680)
.+..+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555566655554332 34666777777777777777777777777777777777777777766544 34
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005729 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (680)
Q Consensus 388 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (680)
+|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (680)
Q Consensus 468 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 522 (680)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.5e-25 Score=230.69 Aligned_cols=359 Identities=14% Similarity=0.029 Sum_probs=165.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (680)
+.+.|++++|++.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444443321 1122333334444444444444444444444332 23444444444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 434 (680)
...|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55444444432 11233444444445555555555555544444321 12333444444444445555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005729 435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYN 514 (680)
Q Consensus 435 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 514 (680)
. +.+..+|..+...+.+.|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 2334444555555555555555555555554432 2234445555555555555555555555554443 23344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 515 IMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLAL 594 (680)
Q Consensus 515 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 594 (680)
.+...+.+.|++++|...++++.+.+ +.+..++..+..+|.+.|++++|.+.++...+ . .+.+..+|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~-~p~~~~~~ 308 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR-----------L-CPTHADSL 308 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-----------H-CTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------h-CcccHHHH
Confidence 55555555555555555555555432 11344455555555555555555555431111 0 12233455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 595 NSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
..++.++.+.|++++|+.+++++.+. .+.+..++..+..+|.+.|++++|.+.++++++
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555542 122344555555555555555555555555554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-24 Score=226.07 Aligned_cols=381 Identities=13% Similarity=0.100 Sum_probs=325.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005729 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (680)
Q Consensus 235 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 314 (680)
...+.+.|+++.+ ...+..+.+.. +.+...+..+...+.+.|++++|..+++...+.. +.+..+|..+...+.+.|
T Consensus 6 a~~~~~~g~~~~A--~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAA--ERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHH--HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHH--HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3456778888554 57777776542 4456778888889999999999999999888753 456789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLK 394 (680)
Q Consensus 315 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (680)
++++|+..|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.+. .+...+..+...|...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998864 34667899999999999999999999999998642 356678888999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 005729 395 EMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD 474 (680)
Q Consensus 395 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 474 (680)
++.... +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|.+..+.. +.+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 998764 3467899999999999999999999999998865 5668889999999999999999999999998764 346
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (680)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 554 (680)
..++..+...|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 8899999999999999999999999999876 5568899999999999999999999999999863 4578999999999
Q ss_pred HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 005729 555 YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTL 632 (680)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 632 (680)
+.+.|++++|.+.++ ++.+ ..| +..+|..++.+|.+.|++++|+..++++.+ +.| +...|..+
T Consensus 315 ~~~~g~~~~A~~~~~-----------~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~l 379 (388)
T 1w3b_A 315 KREQGNIEEAVRLYR-----------KALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp HHTTTCHHHHHHHHH-----------HHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-----------HHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhH
Confidence 999999999887754 4443 334 456899999999999999999999999998 455 56788888
Q ss_pred HHHHHhcCC
Q 005729 633 MKALIRVDK 641 (680)
Q Consensus 633 ~~~~~~~g~ 641 (680)
...+...|+
T Consensus 380 g~~~~~~~~ 388 (388)
T 1w3b_A 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHccC
Confidence 887776653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.2e-22 Score=214.33 Aligned_cols=447 Identities=11% Similarity=0.033 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005729 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (680)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li 272 (680)
...|......+.+.|++++|+..|+++.+.+ |+...|..+..++.+.|+++. +...++.+.+.. +.+...+..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKK--VVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHH--HHHHHHHHhccC-hHHHHHHHHHH
Confidence 3467778888888899999999998888765 677667666666666666643 345666555432 34556667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (680)
.+|.+.|++++|++.|+.+.+.+ +++......++..+........+.+.+..+...+..|+...++.-...........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 77777777777777777776654 22333333444444333333333333332222221111111111111111111111
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHH
Q 005729 353 DAEFVVSEMERSGV---------LPDEHTYSLLIDAYAN---AGRWESARIVLKEMEV-----SHA--------KPNSFI 407 (680)
Q Consensus 353 ~A~~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~ 407 (680)
....+...+..... +.+...+..+...+.. .|++++|+.+|+++.. ... +.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111111 1124555555555554 8999999999999887 311 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 487 (680)
+..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...|..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 8888899999999999999999988764 338889999999999999999999999998765 3467789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
.|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999875 5567889999999999999999999999998863 33678899999999999999999988
Q ss_pred HhhhHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 568 LEGLSDQAVNAFRVMRTDGLKPS----NLALNSLINAFGE---DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 568 ~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
++...+ . ... .++ ...|..+..++.. .|++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 395 ~~~a~~----~---~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 395 YDLAIE----L---ENK---LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHH----H---HHT---SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHH----h---hhc---cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 763322 1 111 122 3489999999999 999999999999999842 336788999999999999
Q ss_pred CcCcHHHHHHHHHHcCCCCCHHH
Q 005729 641 KFHKVPAVYEEMILSGCTPDRKA 663 (680)
Q Consensus 641 ~~~~A~~~~~~m~~~g~~pd~~~ 663 (680)
++++|.+.++++++. .|+...
T Consensus 464 ~~~~A~~~~~~a~~~--~~~~~~ 484 (514)
T 2gw1_A 464 DIDEAITLFEESADL--ARTMEE 484 (514)
T ss_dssp CHHHHHHHHHHHHHH--CSSHHH
T ss_pred CHHHHHHHHHHHHHh--ccccHH
Confidence 999999999999985 566544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.5e-20 Score=198.62 Aligned_cols=345 Identities=14% Similarity=0.078 Sum_probs=226.1
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005729 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342 (680)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 342 (680)
.+...+..+...|.+.|++++|+++|+.+.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345555666666666666666666666655431 2345556666666666666666666666665543 23455555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 343 KGYVKMGYLKDAEFVVSEMERSGVLPDE---HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
..|.+.|++++|...|+++.+.+. .+. ..+..++..+... .+..+...+.+.|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 666666666666666666655421 122 3444443331111 1122234466777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005729 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (680)
++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888887777653 4567777778888888888888888888777653 3467778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChH
Q 005729 500 EMQERGYFPCTTTYNIM------------INLLGEQERWEDVKRLLGNMRAQGLLPN-----VVTYTTLVDIYGQSGRFD 562 (680)
Q Consensus 500 ~m~~~~~~p~~~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~ 562 (680)
++.+.. +.+...+..+ ...+.+.|++++|...++++.+. .|+ ...+..++.++.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 887654 3344445444 77888899999999999999875 343 447888889999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH------
Q 005729 563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKA------ 635 (680)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~------ 635 (680)
+|+..++. +... .+.+..+|..++.+|...|++++|...++++.+ +.| +...+..+..+
T Consensus 313 ~A~~~~~~-----------a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 313 EAIRVCSE-----------VLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHH-----------HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------HHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhc
Confidence 88877652 2221 123567899999999999999999999999988 455 45666666633
Q ss_pred ------HHhcC-----CcCcHHHHHHHH
Q 005729 636 ------LIRVD-----KFHKVPAVYEEM 652 (680)
Q Consensus 636 ------~~~~g-----~~~~A~~~~~~m 652 (680)
|...| +.+++.+.|+++
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 33334 556778888874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.8e-20 Score=199.67 Aligned_cols=316 Identities=12% Similarity=0.068 Sum_probs=228.2
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 212 ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMA 291 (680)
Q Consensus 212 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (680)
+...+.+..... +.+...+..+...+.+.|+++. +..+|+.+.... +.+...+..+..+|...|++++|++.|+.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~--A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLAD--ALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444432 3466778888899999999855 568999887642 457899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHHcCCHHHHHH
Q 005729 292 QGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT---KAYNALLKG------------YVKMGYLKDAEF 356 (680)
Q Consensus 292 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~------------~~~~g~~~~A~~ 356 (680)
.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.. +.+. ..+..++.. +.+.|++++|..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8864 3457889999999999999999999999999863 2334 667777544 778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436 (680)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 436 (680)
.++++.+.. +.+...+..+..+|.+.|++++|++.|+++.... +.+..++..+...|...|++++|...|+++.+..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888887654 3467788888888888888888888888887653 3467788888888888888888888888887653
Q ss_pred CCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHH
Q 005729 437 EPDTHFYNVM------------IDTFGKYNCLHHAMAAFDRMLSEGIEPD-----TITWNTLIDCHFKCGRYDRAEELFE 499 (680)
Q Consensus 437 ~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 499 (680)
+.+...+..+ ...+.+.|++++|...|+.+.+.. |+ ...|..+...+.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444444 566666777777777777766542 33 3356666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 500 EMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 500 ~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
++.+.. +.+...|..+..+|...|++++|...++++.+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 766553 445666777777777777777777777777663
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-20 Score=203.82 Aligned_cols=432 Identities=11% Similarity=0.001 Sum_probs=284.6
Q ss_pred HhhCCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK 211 (680)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~ 211 (680)
.....|+++.|...|..+++.+ | +..++..++.+|.+.|++++|... ....+.+..+|..++.+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 3345577888888888887766 3 466777778888888888887765 33455667778888888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 212 ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMA 291 (680)
Q Consensus 212 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (680)
|+..|+++...+ +++......++..+... .....+.+.+..+
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~l~~~ 133 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNK-------------------------------------QAMSKLKEKFGDI 133 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHH-------------------------------------HHHHHHTTC----
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHH
Confidence 888888877765 23333333333222211 1111111111111
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005729 292 QGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL---------KPRTKAYNALLKGYVK---MGYLKDAEFVVS 359 (680)
Q Consensus 292 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 359 (680)
...+..|+...+..-...............+...+..... +.+...+..+...+.. .|++++|...++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 1100011111000000000000011111111111111100 1124444444444443 778888888888
Q ss_pred HHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 360 EMER-----SGV--------LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ 426 (680)
Q Consensus 360 ~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 426 (680)
++.+ ..- +.+..++..+...|...|++++|...++++...... ...+..+...+...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHH
Confidence 8776 311 123556777888888889999999988888876543 7788888888888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005729 427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (680)
Q Consensus 427 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (680)
.++++.+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+...|...|++++|..+|+++.+..
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 368 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF- 368 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Confidence 988887764 4567788888889999999999999999988765 3466788888999999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHhhhHHHHHHH
Q 005729 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQ---SGRFDDAIECLEGLSDQAVNA 578 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~a~~~ 578 (680)
+.+...+..+...+...|++++|...++++.+.... ++ ...+..+...|.+ .|++++|.+.++..
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a------- 441 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA------- 441 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-------
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-------
Confidence 456778888999999999999999999998875221 11 3488899999999 99999988876532
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 579 FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV 627 (680)
Q Consensus 579 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 627 (680)
... .+.+..+|..+..+|.+.|++++|...++++.+ +.|+..
T Consensus 442 ----~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 442 ----SKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp ----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred ----HHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 221 123456889999999999999999999999998 456644
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=7.1e-20 Score=199.88 Aligned_cols=436 Identities=12% Similarity=0.055 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005729 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (680)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li 272 (680)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|+++. +...++.+.... +.+...+..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEK--VIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC-CchHHHHHHHH
Confidence 4578889999999999999999999998864 3356666677777777777644 346666666543 34566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES------GLKPRTKAYNALLKGYV 346 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~~~~~li~~~~ 346 (680)
..|...|++++|++.|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+.. .+..+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 7777777777777777533 21 2221 122344455555566777777776542 1223332 233344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPDEH-TYSLLIDAYA--------NAGRWESARIVLKEMEVSHAKPN------SFIYSRI 411 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l 411 (680)
...+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+...... ..++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 455555554444333222 12211 2223332222 23588999999999987643211 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 005729 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (680)
Q Consensus 412 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 491 (680)
...+...|++++|...++++.+. .|+...+..+...+...|++++|...|+.+.+.. +.+..+|..+...|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 78889999999999999999886 4668889999999999999999999999998765 44688899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh
Q 005729 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL 571 (680)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 571 (680)
++|...|+++.+.. +.+...|..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|.+.++..
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999875 4567889999999999999999999999999864 336778999999999999999999887633
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 572 SDQAVNAFRVMRTD-GLKPSNLALNSLINAFGED----------QRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 572 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
.+ .. ... ........+..+..++... |++++|+..++++.+.. +.+...+..+...|.+.|
T Consensus 405 ~~----~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 405 KR----LE---EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HH----HH---HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HH----cC---CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 32 21 111 1122233455666778777 99999999999999842 336788999999999999
Q ss_pred CcCcHHHHHHHHHHcC
Q 005729 641 KFHKVPAVYEEMILSG 656 (680)
Q Consensus 641 ~~~~A~~~~~~m~~~g 656 (680)
++++|.+.++++++..
T Consensus 477 ~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 477 KIDEAIELFEDSAILA 492 (537)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999999864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=3.8e-19 Score=194.12 Aligned_cols=402 Identities=12% Similarity=0.061 Sum_probs=275.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHH
Q 005729 190 RLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLN 269 (680)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (680)
+.++.+|..+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|+++.+ ...|+.+ .. .| ...+
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A--~~~~~~~-~~--~~--~~~~ 127 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDA--MFDLSVL-SL--NG--DFDG 127 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH--HHHHHHH-C-----------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHH--HHHHHHH-hc--CC--CCCh
Confidence 3445555556666666666666666666655543 22344455555555555555332 3444322 11 11 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 005729 270 DVIVGFAKAGDASKAMRFLGMAQGVG------LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNALL 342 (680)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li 342 (680)
..+..+...+...+|.+.++.+.... ..|+. ..+..+....+.+.+...+...... .+... ....+.
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 201 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQ 201 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHH
Confidence 23455666677789999999886531 23333 3344455566666665554443322 22222 222222
Q ss_pred HHHH--------HcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 343 KGYV--------KMGYLKDAEFVVSEMERSGVLPD-------EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI 407 (680)
Q Consensus 343 ~~~~--------~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 407 (680)
..+. ..|++++|..+++++.+.... + ..++..+...+...|++++|...+++..... |+...
T Consensus 202 ~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 278 (537)
T 3fp2_A 202 RLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNS 278 (537)
T ss_dssp HHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchH
Confidence 2222 225789999999999876422 3 2356777788899999999999999998864 45888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 487 (680)
+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...|..+...|..
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988765 5678899999999999999999999999998765 3456789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----
Q 005729 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----LPNVVTYTTLVDIYGQS---- 558 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~---- 558 (680)
.|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+... ......+..+...|.+.
T Consensus 357 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999875 56678899999999999999999999999876421 11223345556677777
Q ss_pred ------CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 559 ------GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (680)
Q Consensus 559 ------g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (680)
|++++|...++ +..+. .+.+..+|..+..+|.+.|++++|.+.|+++.+ +.|+
T Consensus 436 ~~~~~~~~~~~A~~~~~-----------~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~ 494 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLT-----------KACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LART 494 (537)
T ss_dssp ---CCHHHHHHHHHHHH-----------HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--
T ss_pred chhhhHhHHHHHHHHHH-----------HHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 88888877765 33332 123456899999999999999999999999998 4454
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7.7e-18 Score=173.04 Aligned_cols=337 Identities=14% Similarity=0.091 Sum_probs=232.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID 378 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 378 (680)
+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777777888888888888888877653 3466777777788888888888888888777653 225677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 005729 379 AYANAGRWESARIVLKEMEVSHAK--PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (680)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 456 (680)
.|...|++++|...|++....... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888888888888888777764320 12223322211100 01122234556666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (680)
Q Consensus 457 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 536 (680)
++|...++.+.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766543 3456667777777777777777777777776654 556667777777777777777777777777
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-----HHHHHHHH
Q 005729 537 RAQGLLPNVVTYT------------TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-----LALNSLIN 599 (680)
Q Consensus 537 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~ 599 (680)
.+... .+...+. .+...+.+.|++++|.+.++ +.... .|+. ..|..+..
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~-----------~~~~~--~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE-----------SVMKT--EPSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHH--CCSSHHHHHHHHHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------HHHhc--CCCchHHHHHHHHHHHH
Confidence 66422 1233222 33667888999998888765 22221 2332 23566889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHhhh
Q 005729 600 AFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPD-RKARAMLRSALRYMKQTL 678 (680)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~a~~~~k~~~ 678 (680)
++.+.|++++|+.+++++.+.. +.+..+|..+...+.+.|++++|.+.++++++. .|+ ...+..+..+.+..++..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999842 337889999999999999999999999999985 565 567788888888887765
Q ss_pred c
Q 005729 679 K 679 (680)
Q Consensus 679 ~ 679 (680)
+
T Consensus 358 ~ 358 (359)
T 3ieg_A 358 K 358 (359)
T ss_dssp C
T ss_pred c
Confidence 4
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.9e-17 Score=168.74 Aligned_cols=332 Identities=13% Similarity=0.033 Sum_probs=236.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (680)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 343 (680)
|+..+..+...+...|++++|++.|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888999999999999999999998753 3457889999999999999999999999999864 447789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 344 GYVKMGYLKDAEFVVSEMERSGVL--PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (680)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (680)
.+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999986320 13344444322111 01123344555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005729 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 422 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (680)
++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666665543 4455666666666677777777777777666553 345666777777777777777777777777
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 005729 502 QERGYFPCTTTYN------------IMINLLGEQERWEDVKRLLGNMRAQGLLPNV----VTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 502 ~~~~~~p~~~t~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 565 (680)
.+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..+|.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6653 33333332 2356678889999999999998875322 33 23556778899999999888
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 005729 566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIR 638 (680)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 638 (680)
+.++... +. .+.+..+|..+..+|.+.|++++|...++++.+ +.|+ ...+..+..+...
T Consensus 293 ~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVL-----------QM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHH-----------HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------Hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 8765322 21 123566899999999999999999999999998 4564 5566666655443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=7.2e-15 Score=158.19 Aligned_cols=354 Identities=15% Similarity=0.094 Sum_probs=259.5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCH
Q 005729 264 DGQLLNDVIVGFAK----AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRT 335 (680)
Q Consensus 264 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~ 335 (680)
+...+..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666766 778888888888777653 56677777777777 788888888888887764 55
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005729 336 KAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFI 407 (680)
Q Consensus 336 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 407 (680)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 667777777777 678888888888887765 56777777777777 678888888888877653 5677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 408 YSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWN 479 (680)
Q Consensus 408 ~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 479 (680)
+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777777 778888888888877754 45666777777765 678888888888877653 456666
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 480 TLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ-----ERWEDVKRLLGNMRAQGLLPNVVTYTT 550 (680)
Q Consensus 480 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ 550 (680)
.+...|.. .++.++|+++|++..+.| +...+..+...+... ++.++|...+.+..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 67777776 788888888888887765 456666777777766 78888888888888764 4566677
Q ss_pred HHHHHHhcC---ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005729 551 LVDIYGQSG---RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGLK 623 (680)
Q Consensus 551 li~~~~~~g---~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 623 (680)
+...|.+.| ++++| ++.|++..+. .+...+..|...|.. .+++++|+.+|++..+.|
T Consensus 334 lg~~y~~~g~~~~~~~A-----------~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKA-----------VEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp HHHHHHHSCCHHHHHHH-----------HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCcccHHHH-----------HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 777776655 33444 4444555553 356677778888877 788888888888888754
Q ss_pred CCHHHHHHHHHHHHh----cCCcCcHHHHHHHHHHcCCC
Q 005729 624 PDVVTYTTLMKALIR----VDKFHKVPAVYEEMILSGCT 658 (680)
Q Consensus 624 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 658 (680)
+...+..|...|.+ .+++++|..+|++..+.|..
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 56677778888877 78888888888888877643
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.3e-14 Score=156.27 Aligned_cols=353 Identities=12% Similarity=0.044 Sum_probs=269.7
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHH
Q 005729 191 LTPLTYNALISACAR----NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ 266 (680)
Q Consensus 191 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~ 266 (680)
.++.++..+...|.. .+++++|+..|++..+.| +. .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------------~ 76 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------------P 76 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------------H
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------------H
Confidence 355566667777776 788888888888877654 12 2
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHH
Q 005729 267 LLNDVIVGFAK----AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRTKAY 338 (680)
Q Consensus 267 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~ 338 (680)
.+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 22333444555 677888888888877754 56667777777777 778888888888887765 56777
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 339 NALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSR 410 (680)
Q Consensus 339 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 410 (680)
..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+..
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778777877 778888888888888764 67788888888887 788888888888887754 5667777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 411 ILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLI 482 (680)
Q Consensus 411 ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 482 (680)
+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+.
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg 298 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLA 298 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 7777776 788889999888887754 45566677777766 788999999999888754 566777788
Q ss_pred HHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 483 DCHFKC-----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE---RWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (680)
Q Consensus 483 ~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 554 (680)
..|... +++++|..+|++..+.| +...+..+...|...| +.++|.+++++..+.| +...+..|...
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 372 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNA 372 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 888877 89999999999998876 4567777777777756 7889999999998864 67788888888
Q ss_pred HHh----cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 005729 555 YGQ----SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 555 ~~~----~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 621 (680)
|.. .+++++|.+.++ +..+.| +...+..|...|.+ .++.++|..+|++..+.|
T Consensus 373 y~~g~g~~~~~~~A~~~~~-----------~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMR-----------KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHH-----------HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHH-----------HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 888 778887776654 444433 56678888888887 899999999999999865
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.4e-16 Score=161.71 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=247.6
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (680)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 341 (680)
+.+...+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566677888889999999999999999988753 3345567778889999999999999999998864 4467889999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 342 LKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (680)
Q Consensus 342 i~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (680)
...+...| ++++|...++++.+.. +.+...|..+...|...|++++|+..+++...... .+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999865 33678899999999999999999999999987653 345677779999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCChh
Q 005729 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--------IEPDTITWNTLIDCHFKCGRYD 492 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~ 492 (680)
+++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.....|..+...|.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998775 5678899999999999999999999999987641 1334678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChH
Q 005729 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY-GQSGRFD 562 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~ 562 (680)
+|...|++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999998875 5578889999999999999999999999998753 23677888888887 4555543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.5e-17 Score=163.26 Aligned_cols=290 Identities=8% Similarity=-0.039 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (680)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 413 (680)
+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455556666666666666666666666543 2234445555666666677777777776666543 234556666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 005729 414 GYRDRG-EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (680)
Q Consensus 414 ~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 492 (680)
.+...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 677777 6777777777766553 3455667777777777777777777777777654 234556666777888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 005729 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG--------LLPNVVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A 564 (680)
+|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. ......++..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887765 5567778888888888888888888888877631 123457888888888899888888
Q ss_pred HHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCc
Q 005729 565 IECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKAL-IRVDKF 642 (680)
Q Consensus 565 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~~ 642 (680)
.+.++... +. .+.+...|..+..+|.+.|++++|.+.++++.+ +.| +...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~-----------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQAL-----------VL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHH-----------HH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHH-----------hh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 87765222 21 122456788888899999999999999988887 445 566777777777 444543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.4e-15 Score=160.27 Aligned_cols=424 Identities=12% Similarity=0.121 Sum_probs=251.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHH
Q 005729 189 QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (680)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (680)
.+.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+.+. ++.+|++..... |+...|
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~--a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDK--VEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhcC--CChHHH
Confidence 4557788888887 477888999999988888752 2233344444444444444422 334444444332 244444
Q ss_pred HHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCC
Q 005729 269 NDVIVGF-AKAGDASKAMR----FLGMAQG-VGLSP-KTATYAAVITALSN---------SGRTIEAEAVFEELKESGLK 332 (680)
Q Consensus 269 ~~li~~~-~~~g~~~~A~~----~~~~~~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~ 332 (680)
...+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|++++|..+|++..+....
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 4444322 22344443333 3433322 12222 23344444443332 34444555555544441000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCC
Q 005729 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME------VSH---AKP 403 (680)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~~ 403 (680)
.....|..........|. . +...++. .+.++++.|..+++++. +.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 001112111110000000 0 0000000 12345566666666532 111 233
Q ss_pred C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH---
Q 005729 404 N--------SFIYSRILAGYRDR----GEW----QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-------YNCLH--- 457 (680)
Q Consensus 404 ~--------~~~~~~ll~~~~~~----g~~----~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~--- 457 (680)
+ ...|...+...... ++. .++..+|++..... +.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 24555555433322 232 46778888877653 5577888888887765 68876
Q ss_pred ----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 005729 458 ----HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRL 532 (680)
Q Consensus 458 ----~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~ 532 (680)
+|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|..+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 899999998863224468889999999999999999999999999863 2233 5788888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 533 LGNMRAQGLLPNVVTYTTLVDI-YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAF 611 (680)
Q Consensus 533 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 611 (680)
|++..+.. +.+...|...+.. +...|++++|..+|+..++ . .+-+...|..++..+.+.|+.++|.
T Consensus 379 ~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~----~--------~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 379 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK----K--------YGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----H--------HTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH----H--------CCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 99998753 2233444333322 3358888888877663222 1 1224678999999999999999999
Q ss_pred HHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 612 AVLQYMKENG-LKPD--VVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 612 ~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
.+|++..+.+ ..|+ ...|...+....+.|+.+.+..+.+++.+.
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999853 2332 458888888888899999999999998874
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=8.1e-17 Score=166.34 Aligned_cols=290 Identities=11% Similarity=-0.027 Sum_probs=220.7
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005729 275 FAKAGDASKAMR-FLGMAQGVGL-SP--KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (680)
Q Consensus 275 ~~~~g~~~~A~~-~~~~~~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 350 (680)
+...|++++|++ .|++...... .| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7776554321 11 34557778888888888888888888888764 4567788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-H--------------HHHHH
Q 005729 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYS-R--------------ILAGY 415 (680)
Q Consensus 351 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~--------------ll~~~ 415 (680)
+++|...++++.+.+ +.+..++..+...|...|++++|++.++++....... ...+. . .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 888888888887764 3367788888888888888888888888887754321 11111 1 23334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 005729 416 RDRGEWQRTFQVLKEMKSSGVEP--DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (680)
Q Consensus 416 ~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 493 (680)
...|++++|...++++.+.. +. +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999988764 22 58899999999999999999999999988764 4467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHH
Q 005729 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP----------NVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~ 563 (680)
|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+..... ...+|..+..+|.+.|++++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999998875 5678899999999999999999999999988752211 26889999999999999999
Q ss_pred HHHHHhh
Q 005729 564 AIECLEG 570 (680)
Q Consensus 564 A~~~~~~ 570 (680)
|..+++.
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988763
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.8e-14 Score=155.24 Aligned_cols=409 Identities=11% Similarity=0.043 Sum_probs=290.7
Q ss_pred HHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005729 151 SWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHC 226 (680)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 226 (680)
+..++.+ |.+..+|..++. +.+.|++++|+.+ ....|.+...|...+..+.+.|++++|..+|+++.... |
T Consensus 3 e~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 3 EKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 4444444 566677777777 4667888888766 45566778889999999999999999999999988764 6
Q ss_pred ChhhHHHHHHHH-HhcCCCChH--HHHHHHHHHHh-CCCC-cCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 005729 227 DFINYSLVIQSL-TRTNKIDSS--LLQKLYKEIEC-DKIE-LDGQLLNDVIVGFAK---------AGDASKAMRFLGMAQ 292 (680)
Q Consensus 227 ~~~~~~~ll~~~-~~~g~~~~~--~~~~l~~~~~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~ 292 (680)
+...|...+... ...|+.+.+ .+.++|+.... .|.. .+...|...+....+ .|++++|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666655433 234655543 23456766654 3443 356778877776654 688999999999988
Q ss_pred hCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHH
Q 005729 293 GVGLSPKTATYAAVITAL-------------SNSGRTIEAEAVFEELK------ESG---LKPR--------TKAYNALL 342 (680)
Q Consensus 293 ~~g~~p~~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~--------~~~~~~li 342 (680)
+.........|....... .+.+++..|..++..+. +.. ++|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 731111123444332211 13456777877777632 211 2444 24566555
Q ss_pred HHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCC
Q 005729 343 KGYVKM----GYL----KDAEFVVSEMERSGVLPDEHTYSLLIDAYAN-------AGRWE-------SARIVLKEMEVSH 400 (680)
Q Consensus 343 ~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~ 400 (680)
...... ++. +.+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 443332 222 47788899888753 3478899988888876 69987 8999999988632
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 401 AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD-T-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW 478 (680)
Q Consensus 401 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 478 (680)
.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+++.|..+|++..+.. +.+...|
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 3456889999999999999999999999999986 443 3 588889999999999999999999998763 2233333
Q ss_pred HHHHH-HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHH
Q 005729 479 NTLID-CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LP--NVVTYTTLVDI 554 (680)
Q Consensus 479 ~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p--~~~~~~~li~~ 554 (680)
...+. .+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+. .| ....|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 32222 2346899999999999998874 45688999999999999999999999999998742 23 25588888888
Q ss_pred HHhcCChHHHHHHHh
Q 005729 555 YGQSGRFDDAIECLE 569 (680)
Q Consensus 555 ~~~~g~~~~A~~~~~ 569 (680)
..+.|+.+.+..+.+
T Consensus 473 e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 473 ESNIGDLASILKVEK 487 (530)
T ss_dssp HHHSSCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 889999999887765
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=8.2e-13 Score=149.27 Aligned_cols=434 Identities=13% Similarity=0.138 Sum_probs=244.2
Q ss_pred CChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHhhC-----------CCCCCHH----H------HHHH
Q 005729 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQ-----------RQRLTPL----T------YNAL 199 (680)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-----------~~~~~~~----~------~~~l 199 (680)
+++.....+++.-...| ..++.+||.|+..|...++-.+.+.... -..+|+. + -.-|
T Consensus 853 nrLkll~p~LE~~~~~g--~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~el 930 (1630)
T 1xi4_A 853 NRLKLLLPWLEARIHEG--CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLEL 930 (1630)
T ss_pred HHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHH
Confidence 44555555566666677 5567899999999988776665543200 0011211 1 1224
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHH
Q 005729 200 ISACARNDDLEK-ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKI--ELDGQLLNDVIVGFA 276 (680)
Q Consensus 200 i~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~--~~~~~~~~~li~~~~ 276 (680)
|+..-+++.++. |.-+.++ -|...|..++.- . ...-+.+.+......+ ..|..-....+..|.
T Consensus 931 i~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~~---~----n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~ 996 (1630)
T 1xi4_A 931 INVCNENSLFKSLSRYLVRR-------KDPELWGSVLLE---S----NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFM 996 (1630)
T ss_pred HHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhcC---C----cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHH
Confidence 444555554432 2222222 245555555521 1 1112344444333221 334455567788899
Q ss_pred HcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 277 KAGDASKAMRFLGMAQGVGL--SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (680)
..|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+..+++... + ...+...+...|.+++|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEA 1068 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHH
Confidence 99999999999998884321 12234445566666555 445555555544421 1 23356667777777787
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 434 (680)
..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|.+.|.+
T Consensus 1069 f~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK---- 1130 (1630)
T 1xi4_A 1069 FAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK---- 1130 (1630)
T ss_pred HHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh----
Confidence 777777531 2222233322 566777777777654 2456777777777777777777777755
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005729 435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYN 514 (680)
Q Consensus 435 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 514 (680)
..|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. + .++...|.
T Consensus 1131 --AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 --ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred --cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 2456667777777777777777777777666543 23223334777777777766433332 1 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHH-----------HHHHHHH
Q 005729 515 IMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV-----------NAFRVMR 583 (680)
Q Consensus 515 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~-----------~~~~~m~ 583 (680)
.+...|...|++++|..+|... ..|..+...|.+.|++++|++.++...+... .-|+..+
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHH
Confidence 6777777777777777777764 3677777777777777777776641110000 0012222
Q ss_pred HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 005729 584 TDG--LKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIR 638 (680)
Q Consensus 584 ~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 638 (680)
..| +..+...+..++..|.+.|.+++|+.+++.... +.+ ....|.-|..+|.+
T Consensus 1271 ~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1271 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 211 223444555666666666666666666655554 223 23344444444443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=8.5e-16 Score=158.64 Aligned_cols=266 Identities=12% Similarity=0.046 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (680)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 344 (680)
...+..+...|.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556677888889999999999999988764 3467788889999999999999999999988875 4578889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 005729 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSL---------------LIDAYANAGRWESARIVLKEMEVSHAKP-NSFIY 408 (680)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ 408 (680)
|...|++++|...++++.+.... +...+.. .+..+...|++++|+..|+++....... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999998876422 2222211 2333448999999999999998765332 58899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 488 (680)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 999999999999999999999988764 5568899999999999999999999999998764 45688899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 489 GRYDRAEELFEEMQERGYFPC-----------TTTYNIMINLLGEQERWEDVKRLLGNM 536 (680)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~m 536 (680)
|++++|...|+++.+.. +.+ ..+|..+..++...|+.++|..++.+.
T Consensus 299 g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999987653 222 688999999999999999999887643
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=7.1e-16 Score=159.21 Aligned_cols=263 Identities=11% Similarity=-0.040 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA 381 (680)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 381 (680)
.|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2344555555555555555555555555555432 223555555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 005729 382 NAGRWESARIVLKEMEVSHAK---------PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP--DTHFYNVMIDTF 450 (680)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~ 450 (680)
..|++++|+..|+++.+.... .....+..+...+...|++++|...++++.+.. +. +..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 555555555555555443210 012233445666777777777777777776653 22 577777888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (680)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 530 (680)
...|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877654 3467788888888888888888888888887764 455778888888888888888888
Q ss_pred HHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 531 RLLGNMRAQGLL-----------PNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 531 ~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
..++++.+.... .+..+|..+..++...|+.+.+..+.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888764211 135788899999999999998877654
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.5e-12 Score=147.26 Aligned_cols=351 Identities=13% Similarity=0.138 Sum_probs=245.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 005729 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA 278 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (680)
+...+...|.+++|..+|++... .....+.++. ..++++.+ .++.+++ -+..+|..+..++.+.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrA--iE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRA--YEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHH--HHHHHhc------CCHHHHHHHHHHHHhC
Confidence 44556677888888888877521 1111222322 33333222 2333322 3577888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005729 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV 358 (680)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 358 (680)
|++++|++.|.+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...++
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999988664 467778888999999999999999998877654 33333445888888888888644442
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP 438 (680)
Q Consensus 359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p 438 (680)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 346667777888899999999999999874 37888999999999999999988875 4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (680)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 518 (680)
+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +.....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 5688888888888888888888876653 3466678899999999999999999998887665 445566766666
Q ss_pred HHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHH--HHHHHHHHCCCC
Q 005729 519 LLGEQ--ERWEDVKRLLGNMRAQGLLP------NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV--NAFRVMRTDGLK 588 (680)
Q Consensus 519 ~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~--~~~~~m~~~g~~ 588 (680)
.+++. ++..++.+.|..-. ++++ +...|..++..|.+.|+++.|...+-...+.|. ..|+.... -.
T Consensus 1323 LyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv 1398 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KV 1398 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cc
Confidence 66653 44555555555332 2222 567899999999999999999976554433332 23444433 23
Q ss_pred CCHHHHHHHHHHHHhcC
Q 005729 589 PSNLALNSLINAFGEDQ 605 (680)
Q Consensus 589 p~~~~~~~li~~~~~~g 605 (680)
.|...|-..+.-|...+
T Consensus 1399 ~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 45566666666665444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=6.9e-16 Score=159.29 Aligned_cols=268 Identities=13% Similarity=0.032 Sum_probs=219.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (680)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 343 (680)
+...+..+...+.+.|++++|++.|+.+.+.. +.+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999998753 3467899999999999999999999999998874 456889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 005729 344 GYVKMGYLKDAEFVVSEMERSGVL---------PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK-PNSFIYSRILA 413 (680)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~ 413 (680)
.|...|++++|...++++.+.... .....+..+...|...|++++|+..|+++...... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999874211 01233445688899999999999999999887533 26889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 005729 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (680)
Q Consensus 414 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 493 (680)
.|...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988764 5678999999999999999999999999998864 3468899999999999999999
Q ss_pred HHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 494 AEELFEEMQERGY---F--------PCTTTYNIMINLLGEQERWEDVKRLLGN 535 (680)
Q Consensus 494 A~~~~~~m~~~~~---~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~ 535 (680)
|...|+++.+... . .+...|..+..++...|+.+.+..+..+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999876420 0 1357889999999999999998887664
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=7.8e-16 Score=156.47 Aligned_cols=344 Identities=14% Similarity=0.155 Sum_probs=151.4
Q ss_pred ccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHH
Q 005729 175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYK 254 (680)
Q Consensus 175 ~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~ 254 (680)
+.|++++|....... +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++ ...+.
T Consensus 15 ~~~~ld~A~~fae~~-~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA--i~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL--VKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH--HHHHH
Confidence 556677777763322 23348888888888888888888888653 4666778888888888877654 35554
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005729 255 EIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR 334 (680)
Q Consensus 255 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 334 (680)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 44442 4456778888888888898888887774 367778999999999999999999999876
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (680)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 414 (680)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +.....-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 36888889999999999999988888 2788899999999999999988554443 23344445578888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY--NCLHHAMAAFDRMLSEGIEP------DTITWNTLIDCHF 486 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~ 486 (680)
|.+.|.+++|..+++...... +-....|+-|.-.|++- +++.+..+.|..- ..+++ +...|..+.-.|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887665 56677777777777664 3444444444321 11111 3456888888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (680)
+.++++.|... |.++ +++..--..+.....+..+.+--.+...-.++. .| ..++.|+.++...=+..++.+
T Consensus 294 ~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 294 KYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHH
T ss_pred hhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccCcHHHHH
Confidence 88998888763 4443 222222222333334444444333333333321 22 235555666555555555544
Q ss_pred HH
Q 005729 567 CL 568 (680)
Q Consensus 567 ~~ 568 (680)
++
T Consensus 365 ~~ 366 (449)
T 1b89_A 365 YF 366 (449)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2e-14 Score=153.92 Aligned_cols=369 Identities=11% Similarity=0.013 Sum_probs=246.5
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 005729 260 KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV-----G--LSP-KTATYAAVITALSNSGRTIEAEAVFEELKESG- 330 (680)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 330 (680)
+.+.....||.|...|...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 33445678999999999999999999999876531 1 123 46789999999999999999999998876421
Q ss_pred ------CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHC
Q 005729 331 ------LKPRTKAYNALLKGYVKM--GYLKDAEFVVSEMERSGVLPDEHTYSLLIDA---YANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 331 ------~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~ 399 (680)
......+++.+..++.+. +++++|...|++..+... -+...+..+... +...++.++|++.+++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 112356676666666654 468999999999887642 255566555544 34567788899999888775
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 005729 400 HAKPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT 475 (680)
Q Consensus 400 ~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 475 (680)
. +.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+.+..+.. +-+.
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 4 3355666666555544 457788999999887764 5677888999999999999999999999988764 3456
Q ss_pred HHHHHHHHHHHHc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 476 ITWNTLIDCHFKC-------------------GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (680)
Q Consensus 476 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 536 (680)
.++..+..+|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 6777776665432 33567888888887765 455677888999999999999999999999
Q ss_pred HHCCCCCCH--HHHHHHHH-HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 537 RAQGLLPNV--VTYTTLVD-IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAV 613 (680)
Q Consensus 537 ~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 613 (680)
++....+.. ..+..+.. .+...|++++|+..++ +..+ +.|+....... ...+.++
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~-----------kal~--i~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI-----------EGVK--INQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH-----------HHHH--SCCCCHHHHHH---------HHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHh--cCcccHHHHHH---------HHHHHHH
Confidence 986443322 12333332 2346788888777654 3333 45554333222 2334455
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 614 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
++...+.. +.+..+|..+..+|...|++++|.+.|++.++.|
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56655532 3467899999999999999999999999999864
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=181.06 Aligned_cols=116 Identities=19% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQG---VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (680)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 341 (680)
..+||+||++||+.|++++|.++|+.|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 245555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 342 LKGYVKMGY-LKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (680)
Q Consensus 342 i~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (680)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 555555554 244555555555555555555555555433
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=181.86 Aligned_cols=154 Identities=20% Similarity=0.248 Sum_probs=125.5
Q ss_pred CCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 005729 224 YHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIEC---DKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT 300 (680)
Q Consensus 224 ~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 300 (680)
...-..||+++|++||+.|+++. |..+|.+|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||+
T Consensus 123 ~~~~~~TynaLIdglcK~G~lee--A~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPL--AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 34456799999999999999965 5689988764 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 005729 301 ATYAAVITALSNSGRT-IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD------EHTY 373 (680)
Q Consensus 301 ~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~ 373 (680)
+|||++|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+ +++.++++ ..+..|+ ..+.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~ 275 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTS 275 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccch
Confidence 9999999999999985 789999999999999999999999987766543 33334444 2334443 4455
Q ss_pred HHHHHHHHHcC
Q 005729 374 SLLIDAYANAG 384 (680)
Q Consensus 374 ~~li~~~~~~g 384 (680)
..|.+.|.+.+
T Consensus 276 ~LL~dl~s~d~ 286 (1134)
T 3spa_A 276 KLLRDVYAKDG 286 (1134)
T ss_dssp TTTHHHHCCCS
T ss_pred HHHHHHHccCC
Confidence 56666666655
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=4.1e-15 Score=150.53 Aligned_cols=277 Identities=10% Similarity=-0.029 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 345 (680)
..+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344555566666666666666666665532 2245556666666666666666666666665542 23455566666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHH
Q 005729 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI-LA-GYRDRGEWQR 423 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~-~~~~~g~~~~ 423 (680)
...|++++|...++++.+.... +...+..+...+ ++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666666554211 111111110000 000011111 11 2556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 424 TFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 424 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+...|...|++++|...|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887777776654 4467777788888888888888888888877654 34577888888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHhh
Q 005729 504 RGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-----------NVVTYTTLVDIYGQSGRFDDAIECLEG 570 (680)
Q Consensus 504 ~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 570 (680)
.. +.+...+..+...+.+.|++++|...++++.+..... +...+..+..+|.+.|++++|..+++.
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 65 4567788888888888999999998888887753221 367888889999999999999888763
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3.9e-15 Score=150.71 Aligned_cols=280 Identities=13% Similarity=0.046 Sum_probs=183.8
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005729 227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAV 306 (680)
Q Consensus 227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 306 (680)
+...+......+...|+++. +..+++.+.... +.+...+..+...|...|++++|.+.|+++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAE--AALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 34456667778888998855 468888887653 4478889999999999999999999999988753 3467889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcC
Q 005729 307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID--AYANAG 384 (680)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g 384 (680)
...+...|++++|.+.++++.+... .+...+..+...+ ++......+.. .+...|
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcc
Confidence 9999999999999999999988642 2222232221000 01111111211 244555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005729 385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFD 464 (680)
Q Consensus 385 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 464 (680)
++++|.+.++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666655443 2245556666666666666666666666655543 3455666667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP-----------CTTTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 465 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
++.+.. +.+...|..+...|.+.|++++|.+.|+++.+..... +...|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766543 3356677777777777788888888777776553111 3667777778888888888887777
Q ss_pred HHH
Q 005729 534 GNM 536 (680)
Q Consensus 534 ~~m 536 (680)
++.
T Consensus 310 ~~~ 312 (327)
T 3cv0_A 310 AQN 312 (327)
T ss_dssp TCC
T ss_pred HHH
Confidence 644
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=4.4e-16 Score=158.30 Aligned_cols=266 Identities=13% Similarity=0.140 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 345 (680)
.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++. .++..+.+.++.+|
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 47778888888888888888888542 46668888888888888888888876666653 34567788888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (680)
Q Consensus 346 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 425 (680)
.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 88888888777774 256678888888888888888888888866 26788888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 426 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..+++......
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 888876 367888888888888888888855544322 334445567888888888888888888887665
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 506 YFPCTTTYNIMINLLGEQ--ERWEDVKRLLGNMRAQGLLP------NVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 506 ~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
+.....|+-+..+|++- ++..+..+.|..- .+++| +...|..++..|.+.++++.|...+-
T Consensus 238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 238 -RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 55667777776666654 3333344333311 12222 34567778888888888888877654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.2e-14 Score=144.55 Aligned_cols=273 Identities=12% Similarity=0.082 Sum_probs=211.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLSPKT--ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 350 (680)
+-....|+++.|++.++..... .|+. .....+.++|...|++++|+..++. .-+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455679999999988876543 3443 3556678899999999999887654 235677888889999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 351 LKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK 429 (680)
Q Consensus 351 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 429 (680)
.++|.+.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998776444 566777788999999999999999987 4678889999999999999999999999
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005729 430 EMKSSGVEPDTHFY---NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (680)
Q Consensus 430 ~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (680)
++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 998764 443211 223344455689999999999998774 5688899999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005729 507 FPCTTTYNIMINLLGEQERWED-VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (680)
+-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 6678889999999999999876 67888988875 454322 2334555555555443
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2e-14 Score=142.86 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=125.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (680)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (680)
+-....|++..|+..++................+.++|...|++++|+..++. ..+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33445566666666665554332111123344455666666666666654433 12344455555555666666666
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005729 423 RTFQVLKEMKSSGV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 423 ~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (680)
+|++.++++...+. +.+...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666555442 22344445555555666666666665554 234555555556666666666666666665
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHH
Q 005729 502 QERGYFPCTTTY---NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNA 578 (680)
Q Consensus 502 ~~~~~~p~~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~ 578 (680)
.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~-------- 225 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE-------- 225 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------
Confidence 5543 222111 11112222335555555555555554 223455555555555555555555544331
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005729 579 FRVMRTDGLKP-SNLALNSLINAFGEDQRDAE-AFAVLQYMKE 619 (680)
Q Consensus 579 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 619 (680)
... ..| +..++..++..+...|+.++ +.++++++.+
T Consensus 226 ---al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 226 ---ALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp ---HHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---HHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111 122 23355555555555555543 3455555554
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.3e-13 Score=145.62 Aligned_cols=372 Identities=12% Similarity=-0.003 Sum_probs=222.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh-CCCCcCHHHHHH
Q 005729 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIEC-DKIELDGQLLND 270 (680)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 270 (680)
....||.|...+...|++++|++.|++..+. +..... ...+....+|+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~------------------------------~~~~~~~~~~~~~~~~~~n 99 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL------------------------------IQQEHADQAEIRSLVTWGN 99 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------HHHHSGGGCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------------------HHhcCccccchHHHHHHHH
Confidence 3568999999999999999999999987542 000000 011223456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 271 VIVGFAKAGDASKAMRFLGMAQGV-----G-LSP-KTATYAAVITALSNS--GRTIEAEAVFEELKESGLKPRTKAYNAL 341 (680)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~~~~~l 341 (680)
+...|...|++++|...+++..+. + ..+ ...++.....++... +++++|++.|++..+.. +-+...+..+
T Consensus 100 la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~ 178 (472)
T 4g1t_A 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGL 178 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 777777777877777777665431 0 111 234555555555443 45777888887777653 2244444444
Q ss_pred HHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 342 LKG---YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (680)
Q Consensus 342 i~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 414 (680)
... +...++.++|++.+++..+.+ +.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...
T Consensus 179 ~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 179 AIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 433 334566677777777776653 2245555555544443 356677777777776554 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------------------cCCHHHHHHHHHHHHHCCCCCCH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-------------------YNCLHHAMAAFDRMLSEGIEPDT 475 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~~~~~~~ 475 (680)
|...|++++|...+++..+.. +.+..++..+...|.. .+..+.|...|+...+.. +.+.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 888888888888887776653 3455556555554432 123567788888777654 3355
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTT--TYNIMIN-LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
..+..+...|...|++++|.+.|++..+....+... .+..+.. ...+.|+.++|...+.+.++. .|+.......+
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~ 412 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK 412 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH
Confidence 678889999999999999999999998875322211 2222322 235689999999999999885 44432221111
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (680)
. .+..++++.... -+.+..+|..+..+|...|++++|++.|++..+.|
T Consensus 413 ~--------------------~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 413 D--------------------KLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp H--------------------HHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred H--------------------HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 111222222221 13345689999999999999999999999999853
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.1e-13 Score=130.57 Aligned_cols=222 Identities=10% Similarity=0.030 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH
Q 005729 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL--PD----EHTYSLL 376 (680)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~~l 376 (680)
|..+...+...|++++|+..|++..+.. .+..+|..+...+...|++++|...+++..+.... ++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444433 33444444444444444444444444444332100 01 3444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 005729 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (680)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 456 (680)
...|...|++++|+..|++..... |+. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 555555555555555555554432 221 23344455555555555555432 22344555555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (680)
Q Consensus 457 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 536 (680)
++|...|++..+.. +.+...|..+...|.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666655543 2345566666666666666666666666666553 344556666666666666666666666666
Q ss_pred HH
Q 005729 537 RA 538 (680)
Q Consensus 537 ~~ 538 (680)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.3e-13 Score=128.37 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHH
Q 005729 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPR----TKAY 338 (680)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~~~ 338 (680)
...+..+...+...|++++|++.|+.+.+.. .+...|..+...+...|++++|+..+++..+... .++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788889999999999999999998876 7788999999999999999999999999876432 112 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR 418 (680)
Q Consensus 339 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 418 (680)
..+...+.+.|++++|...++++.+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999885 3443 45667788999999999998753 23566788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005729 419 GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF 498 (680)
Q Consensus 419 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 498 (680)
|++++|...+++..+.. +.+..++..+...|.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999988765 5678899999999999999999999999998765 446888999999999999999999999
Q ss_pred HHHHHC
Q 005729 499 EEMQER 504 (680)
Q Consensus 499 ~~m~~~ 504 (680)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=1.2e-12 Score=124.09 Aligned_cols=199 Identities=16% Similarity=0.048 Sum_probs=122.7
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (680)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 341 (680)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455667777777778888888888888777643 2346677777777778888888888887777654 3456677777
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 342 LKGYVKM-----------GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR 410 (680)
Q Consensus 342 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 410 (680)
...+.+. |++++|...+++..+... -+...|..+...|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 777777777766665432 245666666666666777777777666666655 45666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (680)
+..++...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666665543 345555666666666666666666665544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.3e-12 Score=123.79 Aligned_cols=91 Identities=13% Similarity=0.015 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
..+..+...+...|++++|...|++..+.. .+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 333334444444444444444444443333 233344444444444444444444444444332 22333344444444
Q ss_pred HhcCCHHHHHHHHH
Q 005729 521 GEQERWEDVKRLLG 534 (680)
Q Consensus 521 ~~~g~~~~A~~~~~ 534 (680)
.+.|++++|...++
T Consensus 196 ~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 196 LLKGKAEEAARAAA 209 (217)
T ss_dssp TC------------
T ss_pred HHccCHHHHHHHHH
Confidence 44444444444433
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=9.8e-13 Score=139.46 Aligned_cols=379 Identities=12% Similarity=0.110 Sum_probs=213.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 005729 198 ALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277 (680)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~ 277 (680)
.+...+.+.|++++|+.+|++..+.|. ++... . |...|..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~--~-------------------------------------Lg~~y~~ 47 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY-SEAQV--G-------------------------------------LADIQVG 47 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-CTGGG--T-------------------------------------CC-----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-HHHHH--H-------------------------------------HHHHHHc
Confidence 356777889999999999999877652 22211 1 1112222
Q ss_pred cCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005729 278 AGDA---SKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-----RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG 349 (680)
Q Consensus 278 ~g~~---~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 349 (680)
.|+. ++|++.|++..+. +...+..+...+...+ ++++|+..|++..+.|.. ..+..|...|...+
T Consensus 48 ~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 48 TRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP 120 (452)
T ss_dssp ---------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred cCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence 3444 6777777666542 4444555555444444 567777777777776532 25555666666554
Q ss_pred CHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHH
Q 005729 350 YLK---DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG---EWQR 423 (680)
Q Consensus 350 ~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~ 423 (680)
..+ ++.+.+....+.| +...+..|...|...+.++++......+.+.-...+...+..+...|.+.| +.++
T Consensus 121 ~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHH
Confidence 433 3444444444443 345566677777777755444443333322211223336777777777777 7788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCChhHHHH
Q 005729 424 TFQVLKEMKSSGVEPDTHFYNVMIDTFGKY----NCLHHAMAAFDRMLSEGIEPDTITWNTLIDC-H--FKCGRYDRAEE 496 (680)
Q Consensus 424 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~ 496 (680)
|++.|++..+.| .++...+..|...|... ++.++|...|++.. . -+...+..+... | ...+++++|++
T Consensus 198 A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 198 LLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 888888877776 56666556666666554 67888888888876 3 345556666655 3 35778888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 005729 497 LFEEMQERGYFPCTTTYNIMINLLGEQE-----RWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ----SGRFDDAIEC 567 (680)
Q Consensus 497 ~~~~m~~~~~~p~~~t~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 567 (680)
+|++..+.| +...+..+...|. .| ++++|...|++.. . -+...+..|...|.. ..++++|.+.
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 888888776 5666666766666 44 8888888888777 3 256667777777765 2255555444
Q ss_pred HhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcC
Q 005729 568 LEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFH 643 (680)
Q Consensus 568 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 643 (680)
|++..+.|. ......|...|.. ..+.++|..+|+...+.|. ++.......+......++..
T Consensus 345 -----------~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 345 -----------LLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp -----------HHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHH
T ss_pred -----------HHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHH
Confidence 445554442 2345556666653 4578888888888887662 22222222222222334455
Q ss_pred cHHHHHHHHHH
Q 005729 644 KVPAVYEEMIL 654 (680)
Q Consensus 644 ~A~~~~~~m~~ 654 (680)
+|..+.++..+
T Consensus 410 ~a~~~~~~~~~ 420 (452)
T 3e4b_A 410 EGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=3.6e-11 Score=118.25 Aligned_cols=224 Identities=10% Similarity=0.010 Sum_probs=142.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005729 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRTKAYN 339 (680)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ 339 (680)
+...+..+...|...|++++|++.|++..+. -+..++..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666777777777777777777662 244566666677777 777777777777776654 566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 340 ALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRI 411 (680)
Q Consensus 340 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 411 (680)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777776654 56666667777766 677777777777666643 45555556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 412 LAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (680)
Q Consensus 412 l~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 483 (680)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 666666666666665543 34555555555655 666666666666665543 2445555555
Q ss_pred HHHH----cCChhHHHHHHHHHHHCC
Q 005729 484 CHFK----CGRYDRAEELFEEMQERG 505 (680)
Q Consensus 484 ~~~~----~g~~~~A~~~~~~m~~~~ 505 (680)
.|.+ .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 566666666666655554
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=4.8e-11 Score=117.33 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=150.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005729 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYS 374 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 374 (680)
+..++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777777777777777777763 345666777777777 777777777777777664 666777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 375 LLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVM 446 (680)
Q Consensus 375 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 446 (680)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776653 56666667777776 777777777777766654 45555666
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 447 IDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (680)
Q Consensus 447 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 518 (680)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777666643 44556666666666 666777777776666654 2455555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 005729 519 LLGE----QERWEDVKRLLGNMRAQG 540 (680)
Q Consensus 519 ~~~~----~g~~~~A~~~~~~m~~~~ 540 (680)
.|.+ .+++++|...+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666666543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=9.7e-13 Score=139.47 Aligned_cols=343 Identities=14% Similarity=0.078 Sum_probs=232.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT---IEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|+..|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566778899999999999988765 334455566667778888 8999999998864 45566667665555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 348 MG-----YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES---ARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 348 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
.+ +.++|...|++..+.|.. ..+..|...|...+..++ +.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 788999999999987633 367778888887665443 445555554443 3456667778888877
Q ss_pred CHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----
Q 005729 420 EWQRTF----QVLKEMKSSGVEPDTHFYNVMIDTFGKYN---CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC---- 488 (680)
Q Consensus 420 ~~~~A~----~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 488 (680)
.++++. .+++.... + .|+ .+..|...|.+.| +.++|...|.+..+.| .++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHc-C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 554444 44444332 2 333 7888888998899 9999999999999988 46777667777777655
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----C
Q 005729 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINL-L--GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG-----R 560 (680)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~ 560 (680)
+++++|+++|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 78999999999998 54 45566666665 4 56899999999999999876 6778888888887 55 7
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636 (680)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 636 (680)
+++|++.|+ +.. .-+...+..|...|.. ..++++|..+|++..+.| +......|...|
T Consensus 303 ~~~A~~~~~-----------~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 364 (452)
T 3e4b_A 303 AKAAEAHFE-----------KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLF 364 (452)
T ss_dssp HHHHHHHHH-----------TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHH
T ss_pred HHHHHHHHH-----------HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHH
Confidence 777776654 333 3456677788877776 349999999999999876 334555666666
Q ss_pred Hh----cCCcCcHHHHHHHHHHcCC
Q 005729 637 IR----VDKFHKVPAVYEEMILSGC 657 (680)
Q Consensus 637 ~~----~g~~~~A~~~~~~m~~~g~ 657 (680)
.. ..+..+|..+|++..+.|.
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 54 4578899999999888774
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1.4e-11 Score=119.41 Aligned_cols=199 Identities=14% Similarity=-0.007 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA 381 (680)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 381 (680)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444445555555555555544432 2234444455555555555555555555544432 123444444555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 005729 382 NAGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
..|++++|++.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544311112 23334444444444445555544444444332 223444444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 461 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
..++.+.+.. +.+...+..+...+.+.|++++|.++++++.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4444444332 223344444444444555555555555554443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.9e-12 Score=124.15 Aligned_cols=195 Identities=9% Similarity=-0.019 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 005729 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLKGYV 346 (680)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~ 346 (680)
......+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|+..+++..+.+..+ ....|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344455666666666666666666542 1233355556666666666666666666665532111 1223555666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ 426 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 426 (680)
..|++++|...+++..+... .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555431 234555555555666666666665555554432 2233444444422222335555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHH
Q 005729 427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNC---LHHAMAAFDRML 467 (680)
Q Consensus 427 l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 467 (680)
.|+++.+.. +.+...+..+...+...|+ .++|...+++..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555544432 2223444444444444444 344444444433
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.1e-11 Score=127.30 Aligned_cols=246 Identities=9% Similarity=0.035 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKESGLKPRTKAYNALLKG 344 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 344 (680)
..|+.+...+.+.|++++|++.|+++++.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 345556666777888888888888887743 2346678888888888886 888888888888764 3467788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 005729 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQR 423 (680)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~ 423 (680)
+.+.|++++|+..|+++++... -+...|..+..++.+.|++++|+..|+++.+..+ -+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888888887653 3678888888888888888888888888877653 367777777777777 555466
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------
Q 005729 424 T-----FQVLKEMKSSGVEPDTHFYNVMIDTFGKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG------- 489 (680)
Q Consensus 424 A-----~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g------- 489 (680)
| +..|++..... +-+...|+.+...+.+.| ++++|.+.+..+ +.. +.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 36666665543 445566666666666666 466666666665 222 334556666666666653
Q ss_pred --ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHH
Q 005729 490 --RYDRAEELFEEM-QERGYFPCTTTYNIMINL 519 (680)
Q Consensus 490 --~~~~A~~~~~~m-~~~~~~p~~~t~~~li~~ 519 (680)
..++|+++|+++ .+.+ +.....|..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~ 362 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRS 362 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 246666777666 4443 3333444444443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.9e-11 Score=118.50 Aligned_cols=201 Identities=13% Similarity=0.098 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (680)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 414 (680)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667888888999999999999999988764 3468889999999999999999999999988764 3467888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 493 (680)
+...|++++|.++++++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732334 56778888889999999999999999988764 3467888889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
|..+|+++.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999988765 567778888888899999999999999999875
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=3.8e-11 Score=113.76 Aligned_cols=197 Identities=11% Similarity=-0.078 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382 (680)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 382 (680)
|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1233344444444444444444444444444322 1133344444444444
Q ss_pred c-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 005729 383 A-GRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (680)
Q Consensus 383 ~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 460 (680)
. |++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 4 44444444444444311111 12333344444444444444444444433321 222333444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 461 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
..++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444332210233333334444444444444444444443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=3e-12 Score=125.87 Aligned_cols=247 Identities=12% Similarity=-0.043 Sum_probs=150.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 277 KAGDASKAMRFLGMAQGVGLS---PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (680)
..|++++|++.|+.+.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346788888888887765321 135567777888888888888888888877764 3467778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (680)
Q Consensus 354 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 433 (680)
|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888877653 2256777777788888888888888888777653 3333333334444556777777777766554
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005729 434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT 510 (680)
Q Consensus 434 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 510 (680)
.. +++...+ .++..+...++.++|...+....+.... .+...|..+...|.+.|++++|...|++..+.. +.+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 249 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNF 249 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhH
Confidence 42 2333333 3555556666666666666665543110 013455566666666666666666666665543 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 005729 511 TTYNIMINLLGEQERWEDVKRLL 533 (680)
Q Consensus 511 ~t~~~li~~~~~~g~~~~A~~~~ 533 (680)
.. ...++...|++++|.+.+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 22 233444555555554443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=5.1e-12 Score=121.63 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 304 AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA 383 (680)
Q Consensus 304 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 383 (680)
..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ---------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 333333444444444444444443321 2233444444444444444444444444444322 11334444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 005729 384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAF 463 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 463 (680)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444332 1233344444444444444444444444444332 233444444455555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 464 DRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 464 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
+.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+.
T Consensus 183 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 183 AAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5544432 223445555555555555555555555555544
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.7e-11 Score=120.25 Aligned_cols=244 Identities=12% Similarity=0.036 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 005729 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP--DEHTYSLLIDA 379 (680)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 379 (680)
.+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...+++..+....+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 45566788899999999999999998864 3355588889999999999999999999998843222 24458889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 005729 380 YANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHA 459 (680)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 459 (680)
|...|++++|++.|++..+... .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 466789999999999999999999999988763 55677777777344445599999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 005729 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGR---YDRAEELFEEMQERG-YFPC------TTTYNIMINLLGEQERWEDV 529 (680)
Q Consensus 460 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~li~~~~~~g~~~~A 529 (680)
...|+++.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ...|..+...+.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998764 3457788888888888888 888999998877541 1122 25777888889999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHH
Q 005729 530 KRLLGNMRAQGLLP-NVVTYTTL 551 (680)
Q Consensus 530 ~~~~~~m~~~~~~p-~~~~~~~l 551 (680)
...++++.+.. | +......+
T Consensus 241 ~~~~~~al~~~--p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD--PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHhcC--ccHHHHHHHh
Confidence 99999998853 4 44444333
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=4.2e-11 Score=113.47 Aligned_cols=202 Identities=11% Similarity=0.013 Sum_probs=168.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (680)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 413 (680)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45678888899999999999999999988764 3367888899999999999999999999988764 346778888999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 005729 414 GYRDR-GEWQRTFQVLKEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (680)
Q Consensus 414 ~~~~~-g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 491 (680)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999988732233 36778888889999999999999999988764 34578888899999999999
Q ss_pred hHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 492 DRAEELFEEMQERGYF-PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 492 ~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
++|..+++++.+.. + .+...+..+...+...|+.+++..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999988765 4 57777888888888999999999999888764
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=1.4e-11 Score=126.57 Aligned_cols=248 Identities=7% Similarity=0.023 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY-LKDAEFVVSEMERSGVLPDEHTYSLLID 378 (680)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 378 (680)
...|..+...+.+.|++++|+..|++.++.. +-+...|+.+...+...|+ +++|+..|+++.+... -+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4568888889999999999999999999875 4478899999999999997 9999999999998753 37899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHH
Q 005729 379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-YNCLH 457 (680)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~ 457 (680)
+|...|++++|+..|+++.... +-+...|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999875 3578899999999999999999999999999875 5678899999999988 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 005729 458 HA-----MAAFDRMLSEGIEPDTITWNTLIDCHFKCG--RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE------ 524 (680)
Q Consensus 458 ~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g------ 524 (680)
+| +..|++.++.. +-+...|+.+...+.+.| ++++|++.+.++ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58888888764 346788999999999888 689999999998 443 567888889999998874
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHHH
Q 005729 525 ---RWEDVKRLLGNM-RAQGLLPN-VVTYTTLVDIYG 556 (680)
Q Consensus 525 ---~~~~A~~~~~~m-~~~~~~p~-~~~~~~li~~~~ 556 (680)
..++|.++++++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999999 653 453 455555555443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=6.8e-12 Score=120.70 Aligned_cols=212 Identities=11% Similarity=0.065 Sum_probs=161.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL 412 (680)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 412 (680)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|++.+++..... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 355677788888999999999999999998764 3468889999999999999999999999988764 34778888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 005729 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (680)
Q Consensus 413 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 492 (680)
..+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988764 5577888889999999999999999999988764 346788889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTT 550 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 550 (680)
+|...|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 232 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHH
Confidence 9999999988775 556888999999999999999999999999885322 4444443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=7.3e-12 Score=123.04 Aligned_cols=248 Identities=12% Similarity=0.019 Sum_probs=175.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 005729 381 ANAGRWESARIVLKEMEVSHAK---PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (680)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 457 (680)
...|++++|+..|+++.+.... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457889999999998876321 245678888888899999999999999888764 456888888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 458 HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 458 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
+|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+.+..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999888764 3457788888888999999999999999888764 444444445555667788999999988777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 538 AQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGL--KPS-NLALNSLINAFGEDQRDAEAFAVL 614 (680)
Q Consensus 538 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~ 614 (680)
... +++...+ .++..+...++.++|.+.++ +...... .|+ ..+|..+..+|.+.|++++|...+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~-----------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLK-----------ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHH-----------HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHH-----------HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 653 2333333 36666777777776666544 2222100 111 357788888888888899998888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHH
Q 005729 615 QYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVY 649 (680)
Q Consensus 615 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 649 (680)
+++.+. .|+. +.....++...|++++|.+.+
T Consensus 239 ~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 888873 4532 223345666777777776665
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=3.2e-12 Score=133.92 Aligned_cols=281 Identities=13% Similarity=0.015 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHH
Q 005729 336 KAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGRWESARIVLKEMEVS----H-AKPNSF 406 (680)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 406 (680)
..+..+...+...|++++|...|+++.+.+.. +. ..|..+...|...|++++|+..+++.... + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33445556666777777777777777664322 22 35666666666777777777766665432 0 011123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 005729 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEPDTITWNTLIDCH 485 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~ 485 (680)
.+..+...|...|++++|...+++..+.. .+.+ ......++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHH
Confidence 34444444444455555544444433210 0000 011233566666667
Q ss_pred HHcCC-----------------hhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 005729 486 FKCGR-----------------YDRAEELFEEMQER----GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-L 542 (680)
Q Consensus 486 ~~~g~-----------------~~~A~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 542 (680)
...|+ +++|.+.+++..+. +. .....++..+...+...|++++|...+++..+... .
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 77777 77777777665432 11 11234677777788888888888888888765311 0
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 543 PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYM 617 (680)
Q Consensus 543 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (680)
.+ ...+..+...|...|++++|.+.++. ++.+.... +..+ ...++..+..+|...|++++|..++++.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKR----TLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH----HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH----HHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12 23778889999999999999988763 33333321 1111 1357889999999999999999999998
Q ss_pred HHC----CCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 618 KEN----GLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 618 ~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
.+. +-.+ ...++..+...|.+.|++++|.+++++.++.
T Consensus 330 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 752 1111 1357888999999999999999999999875
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=4.7e-12 Score=132.11 Aligned_cols=308 Identities=14% Similarity=0.075 Sum_probs=191.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 005729 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERS----GVLP- 368 (680)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~- 368 (680)
.....+......+...|++++|...|++..+.+. .+ ..++..+...|...|++++|...+++..+. +-.+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445566666777777777777777777766532 22 245666666777777777777777665431 1111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK-PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447 (680)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 447 (680)
...++..+...|...|++++|...+++....... .+. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence 1334555556666666666666666655432100 010 00123444555
Q ss_pred HHHHccCC--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 448 DTFGKYNC--------------------LHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 448 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
..|...|+ +++|...+.+..+. +. .....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555 56666655554321 10 1123467777888888888888888888876
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhH
Q 005729 503 ERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLS 572 (680)
Q Consensus 503 ~~~~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 572 (680)
+... .++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|.+.|++++|.+.++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-- 292 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK-- 292 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH--
Confidence 4310 112 236777888888999999999999887753110 11 56788899999999999999988763
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCcCc
Q 005729 573 DQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKP-DVVTYTTLMKALIRVDKFHK 644 (680)
Q Consensus 573 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~~ 644 (680)
++++.... +-.+. ..++..+..+|...|++++|..++++..+ .|..+ ...++..+...+...|+...
T Consensus 293 --a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 293 --HLAIAQEL---NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp --HHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHhc---CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 33333221 11111 34788999999999999999999998875 22222 24577788888888887643
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=3.5e-12 Score=133.64 Aligned_cols=283 Identities=16% Similarity=0.079 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCH
Q 005729 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT----KAYNALLKGYVKMGYLKDAEFVVSEMERS----GV-LPDE 370 (680)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~ 370 (680)
...+..+...+...|++++|+..|+++.+.+. .+. ..|..+...|...|++++|...+++..+. +- ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 44566777889999999999999999998742 233 47888999999999999999999988653 11 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 005729 371 HTYSLLIDAYANAGRWESARIVLKEMEVSH-----AKPNSFIYSRILAGYRDRGE-----------------WQRTFQVL 428 (680)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~-----------------~~~A~~l~ 428 (680)
.++..+...|...|++++|...+++..... ......++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678889999999999999999999876431 01122345555555555555 44444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-C
Q 005729 429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY-F 507 (680)
Q Consensus 429 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 507 (680)
++..+ +..... ........+..+...|...|++++|..+|++..+... .
T Consensus 207 ~~al~----------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 207 QENLK----------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH----------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 33221 111110 0011234666777777888888888888877654310 0
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHH
Q 005729 508 PC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGL--L---PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNA 578 (680)
Q Consensus 508 p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~ 578 (680)
.+ ...+..+...+...|++++|...+++..+... . ....++..+...|...|++++|...++. ++.+
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----al~~ 332 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR----HLAI 332 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHH
Confidence 11 23677788888888999999888888765311 1 1246788889999999999999988763 3333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 579 FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 579 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
...... ......+|..+..+|.+.|++++|..++++..+
T Consensus 333 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 333 AQELGD--RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333210 011134788899999999999999999999987
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=5.5e-09 Score=114.58 Aligned_cols=431 Identities=11% Similarity=0.061 Sum_probs=258.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-CChHHHHHHHHHHHhCC-CCcCH
Q 005729 188 RQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK-IDSSLLQKLYKEIECDK-IELDG 265 (680)
Q Consensus 188 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~~~~~~l~~~~~~~~-~~~~~ 265 (680)
..+.|..+|..+|..+.+.+.++.|..+|+++... ++.....|...+..-.+.+. .+...+..+|+..+... .+|++
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 34568889999999999999999999999999876 34455556665655555554 01234567777766543 23677
Q ss_pred HHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh---------cCChHHHHHHHHH
Q 005729 266 QLLNDVIVGFAKAGDA--------SKAMRFLGMAQG-VGL-SPK-TATYAAVITALSN---------SGRTIEAEAVFEE 325 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~l~~~ 325 (680)
..|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 7777766655554443 223356665443 454 443 3566666654432 3345666677777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC-
Q 005729 326 LKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS--HAK- 402 (680)
Q Consensus 326 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~- 402 (680)
.+......-..+|......--..+. ..+.+++.+ ...+++.|...+.++... ++.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhh
Confidence 6642111112233222111111010 001111111 011223333344332210 110
Q ss_pred --------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 403 --------------P-----N---SFIYSRILAGYRDRG-------EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 403 --------------~-----~---~~~~~~ll~~~~~~g-------~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
| + ...|...+..--..+ ..+++..+|+++.... +-....|...+..+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Confidence 0 0 134444444333322 1344566787776542 55777888888888888
Q ss_pred CCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC---------CCCC------------HH
Q 005729 454 NCLHHAM-AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG---------YFPC------------TT 511 (680)
Q Consensus 454 g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~ 511 (680)
|+.+.|. ++|++.... ++.+...|-..+...-+.|++++|.++|+++.+.. -.|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888886 999888764 34566677788888888999999999998887631 0131 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 005729 512 TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS-GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS 590 (680)
Q Consensus 512 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~ 590 (680)
.|...+....+.|..+.|..+|.++.+.-......+|...+..-.+. ++.+.|.++|+..++ . ..-+
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-----------~-~p~~ 503 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK-----------Y-FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-----------H-HTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------H-CCCc
Confidence 67777887788889999999999998751112334444433333344 447888877663222 1 2234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 591 NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 591 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
...|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567788888888899999999999988753211 3457888888888889999999999999886
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=8.9e-12 Score=130.02 Aligned_cols=307 Identities=17% Similarity=0.085 Sum_probs=203.2
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC
Q 005729 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKES----GLKP 333 (680)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 333 (680)
+.....+......+...|++++|+..|+++.+.+. .+ ...|..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45566777888899999999999999999887532 23 357888999999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 005729 334 -RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV-LPD----EHTYSLLIDAYANAGR--------------------WE 387 (680)
Q Consensus 334 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~ 387 (680)
...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255788889999999999999999998875310 012 3467777788888888 66
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005729 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (680)
Q Consensus 388 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (680)
+|+..+++.... +.. .+. .....++..+...|...|++++|...+++.
T Consensus 165 ~A~~~~~~al~~----------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 165 AAVDFYEENLSL----------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHHH----------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666554321 111 000 011234455555555666666666666555
Q ss_pred HHCCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 467 LSEGI-EPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNM 536 (680)
Q Consensus 467 ~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m 536 (680)
.+... .++ ...+..+...|...|++++|...+++..+... ..+ ..++..+...+...|++++|...+.+.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 43200 011 23667777778888888888888877654310 011 456777788888888888888888887
Q ss_pred HHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 005729 537 RAQGL-LPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRD 607 (680)
Q Consensus 537 ~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 607 (680)
.+... ..+ ..++..+...|.+.|++++|.+.++ +++++.... +..+. ..++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE----KHLEISREV---GDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHh---cCCcchhHHHHHHHHHHHHhhHh
Confidence 65311 111 5577888899999999999998876 333333332 22222 23667777777766655
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.4e-11 Score=124.60 Aligned_cols=279 Identities=15% Similarity=0.033 Sum_probs=166.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPD----EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (680)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 413 (680)
+......+...|++++|...++++.+.... + ...+..+...|...|++++|.+.+++.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 333445555666666666666666554211 2 2445555555666666666666555543210
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH
Q 005729 414 GYRDRGEWQRTFQVLKEMKSSGV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPD----TITWNTLIDCHFK 487 (680)
Q Consensus 414 ~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~ 487 (680)
...+. +....++..+...|...|++++|...+.+..+... ..+ ..++..+...|..
T Consensus 74 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 74 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp ------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 00000 01123444445555555555555555554432100 011 2355666666666
Q ss_pred cCC--------------------hhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 005729 488 CGR--------------------YDRAEELFEEMQER----GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--- 539 (680)
Q Consensus 488 ~g~--------------------~~~A~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--- 539 (680)
.|+ +++|.+.+++..+. +. ......+..+...+...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 77777776665432 10 111345667777788888888888888877643
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 540 -GLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQY 616 (680)
Q Consensus 540 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 616 (680)
+..+ ...++..+...|...|++++|.+.++. ++++... .+..+. ..++..+...|...|++++|..++++
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKK----TLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHh---hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1110 133778888899999999999988763 3333222 111111 34788899999999999999999998
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 617 MKEN----GLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 617 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
+.+. +-.+ ...++..+...|.+.|++++|..++++.++.
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8752 1111 1347788999999999999999999999874
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=3.2e-11 Score=121.92 Aligned_cols=283 Identities=14% Similarity=0.072 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCH
Q 005729 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERS----GVL-PDE 370 (680)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 370 (680)
...+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34566677889999999999999999988642 23 467888999999999999999999987642 111 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 005729 371 HTYSLLIDAYANAGRWESARIVLKEMEVSHA-KPN----SFIYSRILAGYRDRGE--------------------WQRTF 425 (680)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~A~ 425 (680)
.++..+...|...|++++|...+++...... ..+ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677778888888888888888887654211 011 2244555555555555 44444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-
Q 005729 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER- 504 (680)
Q Consensus 426 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 504 (680)
+.+++... +..... ........+..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~a~~----------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 164 DLYEENLS----------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHH----------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44433221 111100 00111335666777777788888888888776543
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHH
Q 005729 505 ---GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQA 575 (680)
Q Consensus 505 ---~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a 575 (680)
+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...++. +
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----a 289 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK----H 289 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----H
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH----H
Confidence 10 011236777778888888888888888877653110 11 55778888999999999999988763 3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 576 VNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 576 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+..+..... ......++..+..+|.+.|++++|..+++++.+
T Consensus 290 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 290 LAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 333333211 011134788899999999999999999999987
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.7e-08 Score=110.68 Aligned_cols=214 Identities=9% Similarity=-0.002 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR-IVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE 430 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 430 (680)
+.+..+|++....- +-+...|...+..+...|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556677776542 346777877777777888888886 888887754 344566677777777788888888888888
Q ss_pred HHHCC---------CCCC------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc
Q 005729 431 MKSSG---------VEPD------------THFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 431 m~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 488 (680)
+.... ..|+ ..+|...+....+.|.++.|..+|....+. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 76531 0131 235667777777778888888888888765 2 12223333322222333
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 005729 489 -GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP--NVVTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 489 -g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 565 (680)
++.+.|..+|+..++. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...++.-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4478888888888776 34456666777777777888888888888887753322 3456777777777788887777
Q ss_pred HHHh
Q 005729 566 ECLE 569 (680)
Q Consensus 566 ~~~~ 569 (680)
++.+
T Consensus 562 ~v~~ 565 (679)
T 4e6h_A 562 TLEK 565 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=8.5e-11 Score=121.87 Aligned_cols=235 Identities=13% Similarity=0.013 Sum_probs=163.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSS----GVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--I----EPDTITWN 479 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~ 479 (680)
....+...|++++|...+++..+. +-.+ ...++..+...|...|+++.|...+.+..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556677777777777776543 1111 23566777777777788888877777765421 0 11235678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GL-LPNVVTYT 549 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 549 (680)
.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|...+.+..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988764310 011 246788888999999999999999988772 22 33467888
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-
Q 005729 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKPD- 625 (680)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~- 625 (680)
.+...|.+.|++++|.+.++ +|+++..... -......+..+...+...|+ +++|+.++++. +..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~----~al~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHS----KGMAYSQKAG---DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----HHHHHHHHHT---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH----HHHHHHHHcC---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 99999999999999998876 3444333321 11112246778888888999 77777776655 33333
Q ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 626 VVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 626 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
...+..+...|.+.|++++|.+++++.++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346778899999999999999999998753
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1e-09 Score=109.83 Aligned_cols=218 Identities=10% Similarity=0.027 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 005729 317 IEAEAVFEELKESGLKPRTKAYNALLKGYV-------KMGYL-------KDAEFVVSEMER-SGVLPDEHTYSLLIDAYA 381 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~ 381 (680)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45556666655532 335555655555554 23554 667777776665 22 224556666666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHH
Q 005729 382 NAGRWESARIVLKEMEVSHAKPNS-FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNCLHHA 459 (680)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A 459 (680)
+.|++++|.++|++..+.... +. ..|..++..+.+.|++++|..+|++..+.. +.+...|....... ...|+.+.|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654221 22 256666666667777777777777766543 23334443333222 125777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005729 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFP--CTTTYNIMINLLGEQERWEDVKRLLGNM 536 (680)
Q Consensus 460 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m 536 (680)
..+|+...+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776543 2356677777777777777777777777777752 233 3566777777777777777777777777
Q ss_pred HHC
Q 005729 537 RAQ 539 (680)
Q Consensus 537 ~~~ 539 (680)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=1.5e-09 Score=108.59 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 282 SKAMRFLGMAQGVGLSPKTATYAAVITALS-------NSGRT-------IEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 282 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
++|+.+|++..... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888877642 345667877777765 35776 8999999999873123466789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 005729 348 MGYLKDAEFVVSEMERSGVLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR-DRGEWQRTF 425 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~A~ 425 (680)
.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999985322 333 899999999999999999999999987653 34455544433322 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEP--DTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 426 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
.+|++..+.. +.+...|..++..+.+.|++++|..+|++..+.. ..| ....|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987753 4578889999999999999999999999999863 343 56789999999999999999999999998
Q ss_pred HCC
Q 005729 503 ERG 505 (680)
Q Consensus 503 ~~~ 505 (680)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 763
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.3e-10 Score=123.81 Aligned_cols=212 Identities=10% Similarity=0.025 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005729 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL-HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (680)
++++.+.+++..... +.+...+..+...+...|++ ++|...|++..+.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655443 45778888888888888898 99999998888764 3457889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 005729 500 EMQERGYFPCTTTYNIMINLLGEQ---------ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--------GRFD 562 (680)
Q Consensus 500 ~m~~~~~~p~~~t~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 562 (680)
+..+.. |+...+..+...+... |++++|...+++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998874 6678888888888888 99999999999999863 23688899999999888 8888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 005729 563 DAIECLEGLSDQAVNAFRVMRTDGLKP----SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALI 637 (680)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 637 (680)
+|++.|+ +..+ +.| +...|..+..+|...|++++|++.|++..+. .| +...+..+..++.
T Consensus 239 ~A~~~~~-----------~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 239 QALSAYA-----------QAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHHH-----------HHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 8877765 3333 234 6679999999999999999999999999984 45 5678889999999
Q ss_pred hcCCcCcHHHHHHHH
Q 005729 638 RVDKFHKVPAVYEEM 652 (680)
Q Consensus 638 ~~g~~~~A~~~~~~m 652 (680)
..|++++|.+.+.++
T Consensus 304 ~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 304 FLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999988766543
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=5e-10 Score=102.58 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF 450 (680)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 450 (680)
..|..+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344444444444444444444444444332 1233344444444444444444444444443332 22334444444444
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (680)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 530 (680)
...++++.+...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...+.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 44455555555554444332 2234445555555555555555555555555443 334455555555555555555555
Q ss_pred HHHHHHHH
Q 005729 531 RLLGNMRA 538 (680)
Q Consensus 531 ~~~~~m~~ 538 (680)
..+++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.8e-10 Score=119.38 Aligned_cols=290 Identities=10% Similarity=-0.002 Sum_probs=202.7
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHH--HhcCChHHHH-----------HHHHHHHHcCCCCCHHH
Q 005729 275 FAKAGDASKAMRFLGMAQGV--GL--SPKTATYAAVITAL--SNSGRTIEAE-----------AVFEELKESGLKPRTKA 337 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~--g~--~p~~~~~~~li~~~--~~~g~~~~A~-----------~l~~~m~~~g~~p~~~~ 337 (680)
+.+.+++++|..+.+.+.+. .+ .++...|-.++..- ...++.+.+. ++++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45678999999988877542 12 23334444443322 2233344444 6666665431 11121
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--
Q 005729 338 ------YNALLKGYVKMGYLKDAEFVVSEMERS----GVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK-P-- 403 (680)
Q Consensus 338 ------~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-- 403 (680)
+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++....... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 223556778899999999999998763 1111 2467888999999999999999999987653111 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 005729 404 ---NSFIYSRILAGYRDRGEWQRTFQVLKEMKSS----GV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----GI 471 (680)
Q Consensus 404 ---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 471 (680)
...+++.+...|...|++++|...+++..+. +. .....++..+...|...|++++|...|++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2357888899999999999999999987643 11 111247888999999999999999999988762 22
Q ss_pred -CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC
Q 005729 472 -EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYNIMINLLGEQER---WEDVKRLLGNMRAQGLLP 543 (680)
Q Consensus 472 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p 543 (680)
+....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 334677899999999999999999999987653 212223345667778888898 66677666655 3333
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 544 -NVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 544 -~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
....+..+...|.+.|++++|.+.++
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34577789999999999999998876
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=9.2e-10 Score=100.79 Aligned_cols=166 Identities=15% Similarity=0.071 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (680)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 414 (680)
..+|..+...|.+.|++++|.+.|++..+... -+..+|..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 34455555555555555555555555544321 244455555555555555555555555544432 2234444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA 494 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 494 (680)
+...++++.+...+.+..... +.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555544432 3345555555566666666666666666655543 23455666666666666666666
Q ss_pred HHHHHHHHHC
Q 005729 495 EELFEEMQER 504 (680)
Q Consensus 495 ~~~~~~m~~~ 504 (680)
++.|++.++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666666554
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=2.3e-11 Score=121.70 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=73.7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 005729 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV-------GLSPKTATYAAVITALSNSGRTIEAEAVFEELKES------ 329 (680)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 329 (680)
.+..++..+...|...|++++|+++|+++.+. .......++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777777777777777766542 11222445566666666666666666666665543
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 330 GL-KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------GV-LPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 330 g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
+- +....++..+...|...|++++|...++++.+. +- ......+..+...|...|++++|++.+++..
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 112344555555566666666666666555432 11 1122334444555555555555555555443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.4e-11 Score=121.55 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 005729 298 PKTATYAAVITALSNSGRTIEAEAVFEELKES-------GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------ 364 (680)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 364 (680)
.+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34556677777777777777777777776652 22334556677777777777777777777776542
Q ss_pred C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 005729 365 G-VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS------HA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS-- 434 (680)
Q Consensus 365 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-- 434 (680)
+ ......++..+...|...|++++|...+++.... +. ......+..+...+...|++++|.+.++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1223456677777777777777777777776543 11 223445666777777777777777777776543
Q ss_pred ----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-------CC---C----CHHHHHHHHHHHHHcCChhHHH
Q 005729 435 ----G-VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-------IE---P----DTITWNTLIDCHFKCGRYDRAE 495 (680)
Q Consensus 435 ----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~---~----~~~~~~~li~~~~~~g~~~~A~ 495 (680)
+ .+....++..+...|...|++++|...++++.+.. .. . ....+..+...+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1 12234466677777777777777777777766420 00 0 1223344455555666777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 496 ELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 496 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
..+....... +....++..+...|.+.|++++|...+++..+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777766543 34456677777788888888888888877765
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=3.5e-10 Score=120.54 Aligned_cols=212 Identities=8% Similarity=0.012 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005729 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK 429 (680)
Q Consensus 351 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 429 (680)
++++...++...... +.+...+..+...|...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555544332 23566666666666666776 77777776666543 2345666667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CChh
Q 005729 430 EMKSSGVEPDTHFYNVMIDTFGKY---------NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC--------GRYD 492 (680)
Q Consensus 430 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 492 (680)
+..+. .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 76655 35566667777777777 77777777777777654 34567777777777777 7888
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 493 RAEELFEEMQERGYF---PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
+|++.|++..+.. + -+...|..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887764 3 477788888888888888888888888887753 2256677788888888888888877655
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=7.1e-10 Score=114.66 Aligned_cols=233 Identities=10% Similarity=-0.006 Sum_probs=155.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C---C-CCHHHHH
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGV-EP----DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--I---E-PDTITWN 479 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~-~~~~~~~ 479 (680)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777654310 12 23566677777788888888888777765421 0 1 1244677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQER----GYF-PCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYT 549 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 549 (680)
.+...|...|++++|.+.|++..+. +-. ....++..+...+...|++++|...+.+..+ ... ....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHH
Confidence 7888888888888888888877653 111 1134677778888888999999988888876 322 2367788
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-
Q 005729 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKPD- 625 (680)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~- 625 (680)
.+...|.+.|++++|...++. ++++. ...+-......+..+...+...++ +++|+.++++ .+..|+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~----al~~~---~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~ 335 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEE----GLDHI---TARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYI 335 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH----HHHHC---CTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH----HHHHH---HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHH
Confidence 888899999999988887652 22221 111212222356667777777888 7777776665 233333
Q ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 626 VVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 626 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
...+..+...|.+.|++++|.+.+++.++
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34666788899999999999999998874
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=7.1e-09 Score=106.82 Aligned_cols=204 Identities=14% Similarity=0.071 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHH
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE----PDTIT 477 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~ 477 (680)
..+...+...|++++|...+++... .+.. | ....+..+...+...|++++|...+++..+.... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444455555555555555555432 1111 2 2334455666667777777777777766543211 12356
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFP-C-TTTYN----IMINLLGEQERWEDVKRLLGNMRAQGLLP---NVVTY 548 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~t~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 548 (680)
+..+...+...|++++|...+++.....-.+ . ..... ..+..+...|++++|...+.+.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6777778888888888888888876431111 1 11111 22344668889999988888876543211 13356
Q ss_pred HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 549 TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 549 ~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
..+...+...|++++|...++...+ .. ...|..++.. .+..+..++...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~----~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNE----NA---RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HH---HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----HH---HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778889999999999988763332 22 2223222332 667778889999999999999998875
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=4.3e-09 Score=108.72 Aligned_cols=304 Identities=9% Similarity=-0.015 Sum_probs=204.8
Q ss_pred CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHH--HhcCChHHHH---------HHHHHH
Q 005729 264 DGQLLNDVIVGF--AKAGDASKAMRFLGMAQGV--GL--SPKTATYAAVITAL--SNSGRTIEAE---------AVFEEL 326 (680)
Q Consensus 264 ~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--g~--~p~~~~~~~li~~~--~~~g~~~~A~---------~l~~~m 326 (680)
...+-+.|-..| ...+++++|.++++.+.+. .+ ..+...|-.++..- ...+....+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 344444455555 6788999999998876542 12 22333444444321 1112222222 555555
Q ss_pred HHcCCCCC--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 327 KESGLKPR--T--KAYNALLKGYVKMGYLKDAEFVVSEMERSGV-LPD----EHTYSLLIDAYANAGRWESARIVLKEME 397 (680)
Q Consensus 327 ~~~g~~p~--~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (680)
.....+.+ . ..+......+...|++++|...+++..+.-. .++ ..++..+...|...|++++|+..+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43211111 1 1233345566789999999999999875311 122 4578888999999999999999998876
Q ss_pred HCCC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005729 398 VSHA---K---PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS----GVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (680)
Q Consensus 398 ~~~~---~---~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (680)
.... . ....+++.+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4311 1 12457788999999999999999999887652 211 12357788889999999999999999998
Q ss_pred HH-----CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 005729 467 LS-----EGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYNIMINLLGEQER---WEDVKRLLG 534 (680)
Q Consensus 467 ~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~li~~~~~~g~---~~~A~~~~~ 534 (680)
.+ .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...++ +.+|...++
T Consensus 249 l~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 249 AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 86 43 233678889999999999999999999998764 222234456666667777888 667776666
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhh
Q 005729 535 NMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGL 571 (680)
Q Consensus 535 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 571 (680)
+ .+..+ ....+..+...|.+.|++++|...++..
T Consensus 328 ~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 328 K---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp H---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5 32222 2456778999999999999999988743
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=8.5e-09 Score=106.21 Aligned_cols=162 Identities=10% Similarity=0.006 Sum_probs=90.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 005729 271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKESGL-KPR----TKAYNAL 341 (680)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l 341 (680)
....+...|++++|.+.++.........+. .+++.+...+...|++++|.+.+++..+... ..+ ..+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344566778888888888877664322222 1455666677777888888777777654210 011 1234556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHH
Q 005729 342 LKGYVKMGYLKDAEFVVSEMERS----GVL--P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP----NSFIYSR 410 (680)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~ 410 (680)
...+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66667777777777777665431 111 1 12344555666666677777766666655432111 1234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
+...+...|++++|...+++..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=4.4e-09 Score=95.80 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 487 (680)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHH
Confidence 3333333333333333333333333221 2233333344444444444444444444443322 2233444444444444
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
.|++++|.++++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 123 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444432 2334444444444444444444444444443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=2e-09 Score=119.55 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 553 (680)
+...|+.|...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|...|++.++.+. -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 35567777777778888888888887777764 44567777777788888888888888887777432 14677777888
Q ss_pred HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 005729 554 IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTT 631 (680)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 631 (680)
+|.+.|++++|++.|+.. .+ +.|+ ...|..+..+|.+.|++++|++.|++..+ +.| +...|..
T Consensus 86 ~l~~~g~~~~A~~~~~kA-----------l~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~ 150 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRA-----------IQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCN 150 (723)
T ss_dssp HHHHTTCHHHHHHHHHHH-----------HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-----------HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhh
Confidence 888888888777765522 22 2344 45788888888888888888888888887 445 4667788
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHH
Q 005729 632 LMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 632 l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
+..+|...|++++|.+.++++++
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888888877764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=6.8e-09 Score=94.53 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR 418 (680)
Q Consensus 339 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 418 (680)
..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 333444444444444444444443322 1234444444444444444444444444444332 22344444444455555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005729 419 GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF 498 (680)
Q Consensus 419 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 498 (680)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544432 3344555555555555566666666665555443 234555666666666666666666666
Q ss_pred HHHHH
Q 005729 499 EEMQE 503 (680)
Q Consensus 499 ~~m~~ 503 (680)
++..+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.07 E-value=2.3e-08 Score=95.02 Aligned_cols=195 Identities=12% Similarity=0.010 Sum_probs=145.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL 412 (680)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 412 (680)
.|...+......+...|++++|...|++..+....++...+..+..+|...|++++|++.|++..+... .+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 456788888888999999999999999988865436777777788899999999999999999887643 3567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 005729 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDT-------HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD---TITWNTLI 482 (680)
Q Consensus 413 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li 482 (680)
..|...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+.. |+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 99999999999999999887753 3344 457777778888899999999999888753 43 45677777
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
.+|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 7775543 34455555543 33444444433 23456678888888888875
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.1e-09 Score=107.49 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQER------G-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ------G 540 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 540 (680)
...++..+...|...|++++|...|+++.+. + .+....++..+...+...|++++|...+.++.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3556777777777888888888887776643 1 1223456777778888888888888888877654 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 541 LLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 541 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
..| ...++..+...|...|++++|.+.++ ++++++...... -.|+ ..++..+..+|...|++++|..+++++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYR----RALEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH----HHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112 35678888899999999999998876 344443333211 1222 3478899999999999999999999887
Q ss_pred HC------C-----------------------------------------CCC-CHHHHHHHHHHHHhcCCcCcHHHHHH
Q 005729 619 EN------G-----------------------------------------LKP-DVVTYTTLMKALIRVDKFHKVPAVYE 650 (680)
Q Consensus 619 ~~------g-----------------------------------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 650 (680)
+. + ..| ...++..+...|.+.|++++|..+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 197 TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 52 0 112 23577888999999999999999999
Q ss_pred HHHHc
Q 005729 651 EMILS 655 (680)
Q Consensus 651 ~m~~~ 655 (680)
+.++.
T Consensus 277 ~al~~ 281 (283)
T 3edt_B 277 CASRN 281 (283)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98753
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=6.7e-09 Score=115.32 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (680)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 414 (680)
...|+.|...|.+.|++++|++.|++..+... -+..+|..|...|.+.|++++|++.|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44556666666666666666666666555431 245555556666666666666666666555443 1234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA 494 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 494 (680)
|.+.|++++|++.|++..+.. +-+...|+.+...|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555554432 3334455555555555555555555555554432 12344455555555555555555
Q ss_pred HHHHHHHH
Q 005729 495 EELFEEMQ 502 (680)
Q Consensus 495 ~~~~~~m~ 502 (680)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=2.6e-08 Score=94.62 Aligned_cols=206 Identities=9% Similarity=-0.032 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLI 377 (680)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 377 (680)
.|...+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4568888999999999999999999999998764478888888999999999999999999999987532 677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 005729 378 DAYANAGRWESARIVLKEMEVSHAKPNS-------FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP--DTHFYNVMID 448 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~ 448 (680)
..|...|++++|+..+++..+..+ .+. ..|..+...+...|++++|.+.|++..+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 999999999999999999987643 344 458888889999999999999999998763 33 3567777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI 515 (680)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 515 (680)
.|... +...++.+...+ ..+...|.... ....+.+++|...|++..+.. +-+..+...
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~ 219 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQM 219 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 77544 344556655543 23444554443 334567899999999998875 334444433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=2.6e-09 Score=104.85 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=84.7
Q ss_pred HcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 005729 277 KAGDASKAMRFLGMAQG-------VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES------GL-KPRTKAYNALL 342 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~-~p~~~~~~~li 342 (680)
..|++++|++.|++..+ ...+....++..+...+...|++++|+..+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554432 111123456666777777777777777777776543 11 12344566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHH
Q 005729 343 KGYVKMGYLKDAEFVVSEMERS------G-VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS------H-AKPNSFIY 408 (680)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~ 408 (680)
..|...|++++|...+++..+. . .+....++..+...|...|++++|+..+++.... . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6677777777777776666542 0 0112445555666666666666666666665443 0 11122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMK 432 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~ 432 (680)
..+...|...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=6e-07 Score=87.46 Aligned_cols=199 Identities=9% Similarity=0.046 Sum_probs=138.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (680)
Q Consensus 459 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 537 (680)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567777776554 45566667888888889999999999998877652 1356777888889999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 538 AQGLLP-----NVVTYTTLVDIYG--QSG--RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA 608 (680)
Q Consensus 538 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 608 (680)
+. .| +..+...|..++. ..| ++.+|..+| +++.+. .|+..+-..++.++.+.|+++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f-----------~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYY-----------EELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHH-----------HHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHH-----------HHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 74 55 3566666766633 334 677766654 455443 355333344455888999999
Q ss_pred HHHHHHHHHHHC-----CC---CC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Q 005729 609 EAFAVLQYMKEN-----GL---KP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMKQT 677 (680)
Q Consensus 609 ~A~~~~~~m~~~-----g~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~~ 677 (680)
+|.+.++.+.+. +. .| |+.+...++......|+ +|.++++++.+ ..|+.....-+...-..+++.
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~~~k~~~Fd~~ 302 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHHQEIDAKFDEL 302 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHH
Confidence 999999976642 10 14 55666566666667786 89999999988 467776655555544444443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=2.4e-07 Score=90.20 Aligned_cols=241 Identities=10% Similarity=-0.003 Sum_probs=156.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (680)
..-.|.+..++.-...+.. ......-..+.+++...|++... ..-.|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3446777777763332221 12223334455777777776532 12234444444433333 322 6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 433 (680)
...|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 45566666788888888999999999888766553 23566777888888899999999999988877
Q ss_pred CCCCC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 434 SGVEP-----DTHFYNVMIDTF--GKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 434 ~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
. .| +..+...|+.++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 45 355566666553 2233 888899999988765 355344444555788889999999998876543
Q ss_pred C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 505 G---------YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 505 ~---------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
. -+-+..++..+|......|+ +|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 03456666556555566676 788888888885
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=4e-08 Score=97.32 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCC-CC----
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI---EP--DTITWNTLIDCHFKC-GRYDRAEELFEEMQERGYF-PC---- 509 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~---- 509 (680)
.+|+.+...|.+.|++++|...|++..+... .+ -..+++.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555555666666666666666655543210 01 134677888888886 9999999999888754200 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH
Q 005729 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV------VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR 583 (680)
Q Consensus 510 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~ 583 (680)
..++..+...+.+.|++++|...+++..+....... ..+..+..++...|++++|+..++...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------- 226 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ----------- 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG-----------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 356788888999999999999999999886433221 257778888999999999988776322
Q ss_pred HCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 005729 584 TDGLKPSN------LALNSLINAFG--EDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 584 ~~g~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 619 (680)
+ +.|+. ..+..++.+|. ..+++++|+..|+++..
T Consensus 227 ~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 227 S--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp C--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred h--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 1 22322 23455666664 45678888888876654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=1.2e-07 Score=80.79 Aligned_cols=127 Identities=14% Similarity=0.242 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 452 (680)
|..+...|...|++++|..+++++.... +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444555555555555555555554432 1234444444444444555555555554444332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
.|++++|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444443322 1223333444444444444444444444433
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=1.1e-07 Score=94.20 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGV----GLSPK-TATYAAVITALSNSGRTIEAEAVFEELK 327 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 327 (680)
...|...|++++|++.|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555566666666666554331 11111 2355555555555566665555555544
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=2.1e-07 Score=79.25 Aligned_cols=127 Identities=13% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 488 (680)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444445555555444444332 2234444444444444445555555444444332 22334444444444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
|++++|.++++++.+.. +.+...+..+...+.+.|++++|...+.++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555554444432 22344444444444444555555544444443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=1.2e-07 Score=88.51 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=52.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHCCC
Q 005729 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT----------------LIDCHFKCGRYDRAEELFEEMQERGY 506 (680)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (680)
+......+...|++++|...|++..+.. +-+...|.. +..+|.+.|++++|+..|++.++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3334445556667777777776666542 112233333 4444444555555555555444443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (680)
Q Consensus 507 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (680)
+-+...+..+...+...|++++|...+++.++... -+...+..+...|.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY 133 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 33344444444444445555555555544444321 13344444444443
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=1.3e-07 Score=88.43 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005729 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI----------------MINLLGEQERWEDVKRLLGNMRAQGLL 542 (680)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (680)
-.....+.+.|++++|+..|++..+.. +-+...|.. +...+.+.|++++|...+++.++...
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP- 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence 334445666777777777777776653 223445555 66677777777777777777776532
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Q 005729 543 PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQR--DAEAFAVLQYMKE 619 (680)
Q Consensus 543 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~m~~ 619 (680)
-+...+..+..+|...|++++|+..|+..+ + +.|+ ..+|..+..+|...|+ .+.+...++....
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----------~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKIL-----------Q--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------H--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 256677777777777777777776654222 2 2343 3466677766655443 3344444444432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 620 NGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRS 669 (680)
Q Consensus 620 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 669 (680)
..|....+..+..++...|++++|...|++.++ +.|+......+.+
T Consensus 153 --~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 153 --PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 222223344455556667777777777777765 4666655544444
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=2.1e-07 Score=90.35 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHH
Q 005729 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LP-NVVT 547 (680)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~ 547 (680)
.+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|...++++++... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666777777788888888888777653 223 56677777777788888888888888777522 11 2445
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HH-----------------HHHHHHHH
Q 005729 548 YTTLVDIYGQ--------SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LA-----------------LNSLINAF 601 (680)
Q Consensus 548 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~-----------------~~~li~~~ 601 (680)
+..+..++.+ .|++++|+..|+. .... .|+. .. +..+..+|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~-----------~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQL-----------FIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH-----------HHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHH-----------HHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777 7777777766552 2221 1221 11 25678889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCcCcHHHHHHHHHHcCCCCCH
Q 005729 602 GEDQRDAEAFAVLQYMKENGLKPD----VVTYTTLMKALIRV----------DKFHKVPAVYEEMILSGCTPDR 661 (680)
Q Consensus 602 ~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~ 661 (680)
.+.|++++|+..|+++.+. .|+ ...+..+..+|.+. |++++|...++++++. .|+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 9999999999999999873 343 45778888888876 8889999999999985 4554
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=2.6e-05 Score=82.81 Aligned_cols=345 Identities=7% Similarity=-0.062 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCCH
Q 005729 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKES-GL-KPRTKAYNALLKGYV----KMGYL 351 (680)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~-~p~~~~~~~li~~~~----~~g~~ 351 (680)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..... |. +.+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888887764 4677788877777776663 34456677766543 32 336677777666543 34567
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYA-------------NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR 418 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 418 (680)
+.+..+|++.+......-...|......-. ..+.+..|..+++++...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 778888888876321111122221111100 0122333444444443210012334555555443322
Q ss_pred C--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 005729 419 G--E-----WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (680)
Q Consensus 419 g--~-----~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 491 (680)
+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|......
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 1 345677888877653 556788888888888899999999999999887 33433333 23332222
Q ss_pred hHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 492 DRAEELFEEMQERG---------Y---FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (680)
Q Consensus 492 ~~A~~~~~~m~~~~---------~---~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (680)
++. ++.+.+.- . ......|...+..+.+.+..+.|..+|.++ +. ...+..+|...+..-...+
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 222 23322210 0 011245666777777788899999999999 32 2234555544333333333
Q ss_pred -ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 560 -RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638 (680)
Q Consensus 560 -~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 638 (680)
+.+.|..+|+ ...+. ..-+...|...++...+.|+.+.|..+|+++. .....|...+.--..
T Consensus 334 ~d~~~ar~ife-----------~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 334 GSRATPYNIFS-----------SGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp CCSHHHHHHHH-----------HHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred CChHHHHHHHH-----------HHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 5777777765 22221 11233456777888888999999999999872 257788888887788
Q ss_pred cCCcCcHHHHHHHHHH
Q 005729 639 VDKFHKVPAVYEEMIL 654 (680)
Q Consensus 639 ~g~~~~A~~~~~~m~~ 654 (680)
.|+.+.+.++++++..
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999998888874
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.76 E-value=4.9e-07 Score=87.70 Aligned_cols=100 Identities=11% Similarity=-0.046 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHH
Q 005729 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL--PDEHTY 373 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~ 373 (680)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+.... .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555556666666666666666665542 112 445555555666666666666666665553211 113344
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHC
Q 005729 374 SLLIDAYAN--------AGRWESARIVLKEMEVS 399 (680)
Q Consensus 374 ~~li~~~~~--------~g~~~~A~~~~~~m~~~ 399 (680)
..+..+|.. .|++++|+..|+++...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 445555555 55555555555555443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=1.3e-06 Score=81.83 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005729 319 AEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG----RWESARIVLK 394 (680)
Q Consensus 319 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 394 (680)
|++.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + +.++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34444445555555555555555555555443 34444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 005729 395 EMEVSHAKPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGK----YNCLHHAMAAFDR 465 (680)
Q Consensus 395 ~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 465 (680)
+..+.+ +...+..+...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33444444444443 44555555555554443310 013444444444444 4455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHCC
Q 005729 466 MLSEGIEPDTITWNTLIDCHFKC-G-----RYDRAEELFEEMQERG 505 (680)
Q Consensus 466 m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 505 (680)
..+.+ .+...+..|...|... | ++++|..+|++..+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 54431 2233344444444432 1 4555555555555544
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=8.6e-08 Score=106.84 Aligned_cols=149 Identities=9% Similarity=-0.010 Sum_probs=91.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005729 416 RDRGEWQRTFQVLKEMK--------SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (680)
Q Consensus 416 ~~~g~~~~A~~l~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 487 (680)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666667776666665 222 3345566666666666666666666666666543 2355566666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005729 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (680)
.|++++|.+.|++..+.. +-+...|..+..++.+.|++++ ...++++++.+. -+...+..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666554 3345566666666666666666 666666665421 2455666666666666666666655
Q ss_pred Hh
Q 005729 568 LE 569 (680)
Q Consensus 568 ~~ 569 (680)
++
T Consensus 557 ~~ 558 (681)
T 2pzi_A 557 LD 558 (681)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=2e-06 Score=80.47 Aligned_cols=178 Identities=10% Similarity=0.039 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG----EWQRTFQV 427 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~l 427 (680)
.+|.+.|++..+.| +...+..|...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677788887765 78888888889989999999999999988764 56777777777777 6 88999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCChhHHHHHH
Q 005729 428 LKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFK----CGRYDRAEELF 498 (680)
Q Consensus 428 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 498 (680)
|++..+.| +...+..|...|.. .+++++|...|.+..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98887754 56677777777876 78888999988888876521 126777888888887 77888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 005729 499 EEMQERGYFPCTTTYNIMINLLGEQ-E-----RWEDVKRLLGNMRAQGL 541 (680)
Q Consensus 499 ~~m~~~~~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 541 (680)
++..+.+ .+...+..|...|... | +.++|...+++..+.|.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8887762 2444666666666543 2 78888888888887663
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=9.4e-06 Score=79.81 Aligned_cols=169 Identities=8% Similarity=-0.008 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---C
Q 005729 280 DASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSG--RTIEAEAVFEELKESGLKPRTKAYNALLKGY----VKM---G 349 (680)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~----~~~---g 349 (680)
..++|++.++.++.. .|+ ...|+.--..+...| ++++++++++.+..... -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 335777777777664 343 455777777777777 77777777777776542 2445554444443 334 5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 005729 350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE--SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE------W 421 (680)
Q Consensus 350 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------~ 421 (680)
+++++..+++.+.+.. +.+..+|+.-.-.+.+.|+++ ++++.++++.+.++ .|...|+.....+...+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 6667777777766654 236666666666666666666 66666666665542 355555544444444443 4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005729 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN 454 (680)
Q Consensus 422 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 454 (680)
+++++.++++.... +-|...|+.+-..+.+.|
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcC
Confidence 44444444443332 333444444333333333
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=2e-05 Score=77.45 Aligned_cols=222 Identities=9% Similarity=0.019 Sum_probs=173.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---
Q 005729 313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG--YLKDAEFVVSEMERSGVLPDEHTYSLLIDAY----ANA--- 383 (680)
Q Consensus 313 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~--- 383 (680)
....++|+++++.++..+ +-+...|+.--..+...| +++++++.++.+...+.+ +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 344568999999999875 346677888888888888 999999999999987543 566776655555 555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------
Q 005729 384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ--RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC------ 455 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~------ 455 (680)
+++++++++++++.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78999999999998875 458888888888888888888 9999999998875 5677888777777777666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 456 LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR-AEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRL 532 (680)
Q Consensus 456 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~ 532 (680)
++++++.++.++... +-|...|+.+-..+.+.|+... +.++.+++.+.+ -+.+...+..+...+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 888888888888765 4588889888888888888444 555666665432 245778888889999999999999999
Q ss_pred HHHHHHC
Q 005729 533 LGNMRAQ 539 (680)
Q Consensus 533 ~~~m~~~ 539 (680)
++.+.+.
T Consensus 281 ~~~l~~~ 287 (306)
T 3dra_A 281 YDLLKSK 287 (306)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998864
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=3.2e-07 Score=83.08 Aligned_cols=159 Identities=12% Similarity=0.097 Sum_probs=110.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI-YG 556 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~ 556 (680)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777888888888888776654 4567777788888888888888888888776643 344333222211 11
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 005729 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD---VVTYTTL 632 (680)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 632 (680)
..+...+|+ ..+++... ..|+ ...+..+..++...|++++|+..++++.+. .|+ ...+..+
T Consensus 86 ~~~~~~~a~-----------~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l 150 (176)
T 2r5s_A 86 QQAAESPEL-----------KRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTF 150 (176)
T ss_dssp HHHTSCHHH-----------HHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHH
T ss_pred hhcccchHH-----------HHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHH
Confidence 111222233 33444444 2454 568889999999999999999999999884 443 5688889
Q ss_pred HHHHHhcCCcCcHHHHHHHHHH
Q 005729 633 MKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 633 ~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
...+...|+.++|...|++.+.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999988764
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=4.9e-07 Score=90.15 Aligned_cols=160 Identities=10% Similarity=-0.007 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH
Q 005729 476 ITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFP-CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-----NV 545 (680)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~ 545 (680)
.+|+.+...|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|...+++.++..... ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 35666777788888888888888876543 2111 13567777778877 99999999888877531110 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 624 (680)
.++..+...|.+.|++++|+..++. +++++.. .+..+.. ..+..++.++...|++++|...|++.. . .|
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~----al~~~~~---~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p 225 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQK----EKSMYKE---MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IP 225 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--ST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHH---cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CC
Confidence 5788889999999999999988763 3333222 2222222 267777888888899999999999988 3 33
Q ss_pred C---H---HHHHHHHHHHHhcCCcCcHHH
Q 005729 625 D---V---VTYTTLMKALIRVDKFHKVPA 647 (680)
Q Consensus 625 ~---~---~~~~~l~~~~~~~g~~~~A~~ 647 (680)
+ . .....++.++ ..|+.+.+.+
T Consensus 226 ~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 226 GFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2 1 2344455555 5666555544
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=9.6e-05 Score=78.45 Aligned_cols=353 Identities=10% Similarity=-0.006 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhC-CC-CcCHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECD-KI-ELDGQLLNDVI 272 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~li 272 (680)
+|...+..+-. |+++.|..+|++.... .|+...|...++-..+.+.. ....+.+|+..... |. ..+...|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~-~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK-KFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 33334433333 6777777888777764 36777777777666555432 12345666665542 43 33566777666
Q ss_pred HHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCCCH
Q 005729 273 VGFA----KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN-------------SGRTIEAEAVFEELKESGLKPRT 335 (680)
Q Consensus 273 ~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~l~~~m~~~g~~p~~ 335 (680)
..+. ..|+.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6543 235677788888877763111111223222221111 12233344444444321001134
Q ss_pred HHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 336 KAYNALLKGYVKMG--Y-----LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY 408 (680)
Q Consensus 336 ~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 408 (680)
..|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... +.+...|
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 45655555432221 1 345677888888753 456888888888889999999999999999887 3333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 005729 409 SRILAGYRDRGEWQRTFQVLKEMKSSG---------V---EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI 476 (680)
Q Consensus 409 ~~ll~~~~~~g~~~~A~~l~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 476 (680)
.. |....+.++. ++.+.+.- . ......|...+....+.+.++.|..+|++. +.. ..+..
T Consensus 250 ~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 LY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 22 2222111111 22222110 0 011245666666666778899999999998 321 23444
Q ss_pred HHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKC-GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555 (680)
Q Consensus 477 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 555 (680)
.|......-... ++.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|+++. .....|...++.-
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE 394 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 554322222223 36999999999998763 3345556667777788999999999999873 2577888888877
Q ss_pred HhcCChHHHHHHHh
Q 005729 556 GQSGRFDDAIECLE 569 (680)
Q Consensus 556 ~~~g~~~~A~~~~~ 569 (680)
...|+.+.+.++++
T Consensus 395 ~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 395 FMVGSMELFRELVD 408 (493)
T ss_dssp HHHSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 88899888887765
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=3.2e-07 Score=102.27 Aligned_cols=173 Identities=8% Similarity=-0.068 Sum_probs=140.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005729 381 ANAGRWESARIVLKEME--------VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (680)
Q Consensus 381 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 452 (680)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999998887 332 3456778888888999999999999999988764 5577888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 532 (680)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988765 3367788899999999999999 99999998876 56788899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 005729 533 LGNMRAQGLLPN-VVTYTTLVDIYGQSGR 560 (680)
Q Consensus 533 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 560 (680)
++++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988874 454 5677777778766665
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=3.2e-06 Score=79.85 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 005729 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS--FIYS 409 (680)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 409 (680)
+...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566777788889999999999988865322 1 1356777888888899999999999888876533221 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 005729 410 RILAGYRD------------------RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471 (680)
Q Consensus 410 ~ll~~~~~------------------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 471 (680)
.+..++.. .|++++|...|+++.+.. +-+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 334555555555544431 1111111110000 0000000
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT---TTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (680)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 540 (680)
......+...|.+.|++++|...|+++++.. +.+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0011234556677777777777777777653 1122 456667777777777777777777776653
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=7.6e-07 Score=87.76 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (680)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 363 (680)
...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 3344445555555555555555555555432 22444455555555555555555555555443
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=1.3e-06 Score=87.00 Aligned_cols=123 Identities=6% Similarity=-0.002 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-H
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---P--DTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPC-T 510 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~ 510 (680)
.++..+...|.. |++++|...|++..+.... + ...+++.+...|.+.|++++|+..|++..+. +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345556666666 7777777777766542100 0 1356777888888888888888888887653 21111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC--HHHHHHHHHHHHhcCChHHHHH
Q 005729 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLL--PN--VVTYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 511 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~--~~~~~~li~~~~~~g~~~~A~~ 566 (680)
..+..+...+...|++++|...+++.. .... .. ......++.+| ..|+.+...+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 255556666777788888888888887 4211 11 12344555555 4566665554
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=4.8e-07 Score=81.87 Aligned_cols=78 Identities=9% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 424 TFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 424 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|...|++.+
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 344444444332 2334555555555555555555555555555443211 23345555555555566655555555443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.61 E-value=1.1e-06 Score=86.45 Aligned_cols=161 Identities=11% Similarity=0.005 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 005729 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN-TLID 483 (680)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~ 483 (680)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++.... |+..... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3444555555666666666666666655543 4455666666677777777777777777665542 3433222 2223
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChH
Q 005729 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFD 562 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 562 (680)
.+.+.++.++|...+++..+.. +.+...+..+...+...|++++|...+.++++..... +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556677777788887777765 5567777788888888888888888888887753221 2567778888888888888
Q ss_pred HHHHHHh
Q 005729 563 DAIECLE 569 (680)
Q Consensus 563 ~A~~~~~ 569 (680)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 8777665
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=3.9e-06 Score=79.24 Aligned_cols=186 Identities=10% Similarity=0.031 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH
Q 005729 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLK-P-RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYS 374 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~ 374 (680)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..+|.+.|++++|...|+++.+...... ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456667788899999999999999999986321 1 135788899999999999999999999987643211 12455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 375 LLIDAYAN------------------AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436 (680)
Q Consensus 375 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 436 (680)
.+..+|.. .|+.++|+..|+++.+..+. +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 55566654 57899999999999876432 22222211110 00111111
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
.....+...|.+.|++++|...|+.+.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112345677888999999999999988763 33 2467888899999999999999999888764
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=1.6e-07 Score=82.43 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005729 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG 489 (680)
Q Consensus 410 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 489 (680)
.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +-+...|..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444443332 2334444444444444444444444444444332 123344444444444444
Q ss_pred ChhH
Q 005729 490 RYDR 493 (680)
Q Consensus 490 ~~~~ 493 (680)
++++
T Consensus 114 ~~~~ 117 (150)
T 4ga2_A 114 VTDG 117 (150)
T ss_dssp SSSS
T ss_pred ChHH
Confidence 4443
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=9.6e-06 Score=80.06 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--
Q 005729 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT------TTYNIMINLLGEQERWEDVKRLLGNMRAQGL---LPN-- 544 (680)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-- 544 (680)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+.+..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556777888999999999999988775422 22 2234455667788999999999999886421 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMKEN-- 620 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 620 (680)
..+++.+...|...|++++|...++ +|+++++.. +..+. ..+|..+..+|.+.|++++|+.++++..+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~----kal~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFE----QILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhc---CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998876 333333321 11111 258899999999999999999999998752
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCCcCcH-HHHHHHHHH
Q 005729 621 --GLKPD-VVTYTTLMKALIRVDKFHKV-PAVYEEMIL 654 (680)
Q Consensus 621 --g~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 654 (680)
+.... ..+|..+..+|.+.|++++| ...+++.+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11111 57888999999999999999 787888763
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=1.1e-06 Score=96.02 Aligned_cols=153 Identities=10% Similarity=0.002 Sum_probs=84.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV 392 (680)
Q Consensus 313 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (680)
.|++++|++.|++..+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356667777777666542 2345666667777777777777777777766653 22466666666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 005729 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---NCLHHAMAAFDRMLSE 469 (680)
Q Consensus 393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 469 (680)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77666543 2345566666666666666666666666665543 33455566666666666 6666666666666554
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=1.6e-07 Score=82.49 Aligned_cols=145 Identities=10% Similarity=-0.036 Sum_probs=111.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 005729 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (680)
Q Consensus 412 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 491 (680)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|...|++..+.. +-+...|..+..+|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556678888888888776432 2234456678889999999999999999998875 44788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005729 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL-LGNMRAQGLLPNVVTYTTLVDIYGQSGR 560 (680)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~ 560 (680)
++|+..|++..+.. +-+...|..+...+.+.|++++|.+. +++..+... -+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 99999999998875 55688899999999999998776654 578887532 267777777777766664
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=1.6e-06 Score=94.73 Aligned_cols=154 Identities=10% Similarity=0.020 Sum_probs=92.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 427 (680)
.|++++|.+.+++..+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776553 2256677777777777777777777777776653 23566677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHC
Q 005729 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC---GRYDRAEELFEEMQER 504 (680)
Q Consensus 428 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 504 (680)
+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77766553 4456666777777777777777777777766553 23456666667777777 7777777777776665
Q ss_pred C
Q 005729 505 G 505 (680)
Q Consensus 505 ~ 505 (680)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=4e-05 Score=75.50 Aligned_cols=211 Identities=13% Similarity=0.089 Sum_probs=142.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT---WNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 429 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
..+......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|..++++..+..
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 333333346777776666665543211 1111111222332 3334677889999999999999988753
Q ss_pred C-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHH
Q 005729 506 Y-FPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQA 575 (680)
Q Consensus 506 ~-~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a 575 (680)
. .|+. ..+..+...+...|++++|...+.++.+.... ++ ..+++.+...|...|++++|...++ +|
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~----~a 181 (293)
T 3u3w_A 106 EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFE----QI 181 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHH----HH
T ss_pred cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HH
Confidence 1 2221 12334666677788999999999999984222 22 3478999999999999999998877 34
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-cCcHHHH
Q 005729 576 VNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKPD-VVTYTTLMKALIRVDK-FHKVPAV 648 (680)
Q Consensus 576 ~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~-~~~A~~~ 648 (680)
++.++... +..+.. .+|..+..+|.+.|++++|+.++++..+ .+..+. ..+|..+..+|.+.|+ +++|.+.
T Consensus 182 l~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~ 259 (293)
T 3u3w_A 182 LKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 44333321 122222 3789999999999999999999998875 232233 5788999999999995 5999999
Q ss_pred HHHHHH
Q 005729 649 YEEMIL 654 (680)
Q Consensus 649 ~~~m~~ 654 (680)
+++.+.
T Consensus 260 ~~~Al~ 265 (293)
T 3u3w_A 260 YKKASF 265 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=5e-05 Score=74.80 Aligned_cols=166 Identities=9% Similarity=-0.026 Sum_probs=115.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 005729 447 IDTFGKYNCLHHAMAAFDRMLSEGI-EPDT----ITWNTLIDCHFKCGRYDRAEELFEEMQERGYF-PC----TTTYNIM 516 (680)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~l 516 (680)
+..+...|++++|...++...+... .++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777788888888877765321 1221 12334556666677888888888888763211 22 3368888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 005729 517 INLLGEQERWEDVKRLLGNMRAQ-----GLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS 590 (680)
Q Consensus 517 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~ 590 (680)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|++.++ +|+++.. ..+..+.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~----~al~~~~---~~~~~~~ 234 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN----KAIEISC---RINSMAL 234 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHH---HTTBCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHH---HcCcHHH
Confidence 88888899999999888888742 1122 23478899999999999999998876 3443332 3333333
Q ss_pred -HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 005729 591 -NLALNSLINAFGEDQ-RDAEAFAVLQYMKE 619 (680)
Q Consensus 591 -~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 619 (680)
..+|..+..+|.+.| .+++|.+.++++..
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 458999999999999 57999999998874
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.46 E-value=1.2e-05 Score=74.90 Aligned_cols=129 Identities=17% Similarity=0.006 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 347 (680)
+..+...+...|++++|++.|++.. .|+...|..+...+.+.|++++|+..|++..+.. +.+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4556677888999999999998774 5678889999999999999999999999988764 4577888999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 005729 348 MGYLKDAEFVVSEMERSGVLP---------------DEHTYSLLIDAYANAGRWESARIVLKEMEVSHA 401 (680)
Q Consensus 348 ~g~~~~A~~~~~~m~~~g~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 401 (680)
.|++++|...|++..+..... ....+..+...|.+.|++++|.+.|++..+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999988753221 136788888899999999999999999887643
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=1.2e-05 Score=74.80 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=57.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 005729 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (680)
Q Consensus 413 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 492 (680)
..+...|++++|...|++.. .|+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 33444444444444444331 2344444444444444555555555554444332 223444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 493 RAEELFEEMQERGYFPC----------------TTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~p~----------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+|...|++..+.. +.+ ...+..+...+.+.|++++|...+++..+.
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555554432 111 144555555555566666666666555543
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=8e-05 Score=73.34 Aligned_cols=160 Identities=7% Similarity=0.005 Sum_probs=107.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--HHHHH
Q 005729 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPD-----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI---EPD--TITWN 479 (680)
Q Consensus 410 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~ 479 (680)
..+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+.+..+... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344556666666666666666554321111 12233455566777788888888887765321 112 45788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 005729 480 TLIDCHFKCGRYDRAEELFEEMQER-GYFPC-----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLP-NVVTY 548 (680)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~ 548 (680)
.+...|...|++++|..+|++..+. ...|+ ..++..+...|...|++++|...+++..+. +... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888889999999999999887621 00112 257888888899999999999999887653 1111 26788
Q ss_pred HHHHHHHHhcCChHHH-HHHHh
Q 005729 549 TTLVDIYGQSGRFDDA-IECLE 569 (680)
Q Consensus 549 ~~li~~~~~~g~~~~A-~~~~~ 569 (680)
..+...|.+.|++++| ...++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHH
Confidence 8999999999999999 65554
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=3e-06 Score=74.08 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=90.3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005729 541 LLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (680)
Q Consensus 541 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (680)
+.| +...+..+...+.+.|++++|+..|+. ... ..| +...|..+..+|...|++++|+..|+++.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~-----------al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF-----------LCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 344 455778888999999999999888663 332 245 45689999999999999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 619 ENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRS 669 (680)
Q Consensus 619 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 669 (680)
+ +.| ++..|..+..+|.+.|++++|...|++.++. .||.........
T Consensus 98 ~--l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~~~~~A~~ 145 (151)
T 3gyz_A 98 A--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEKLKIKAQS 145 (151)
T ss_dssp H--HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred h--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 8 445 5788999999999999999999999999985 677764444333
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.00027 Score=70.25 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHH
Q 005729 318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-G-RWESARIVLK 394 (680)
Q Consensus 318 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 394 (680)
+|++++++++..+ +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +.++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3444444444332 113333333333333334 244444444444443322 344444433333333 3 4444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-------HHHH
Q 005729 395 EMEVSHAKPNSFIYSRILAGYRDRGEWQ--------RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC-------LHHA 459 (680)
Q Consensus 395 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~A 459 (680)
++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+. ++++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 444332 223334433333332222222 4555555554433 3344455544444444443 4555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh--------------------hHHHHHHHHHHHCC-----CCCCHHHHH
Q 005729 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY--------------------DRAEELFEEMQERG-----YFPCTTTYN 514 (680)
Q Consensus 460 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~p~~~t~~ 514 (680)
++.+++..... +-|...|+.+-..+.+.|+. ....+...++...+ -.++...+.
T Consensus 228 Le~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 228 LIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 55555555443 33555555555555544442 12222222222211 135666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 515 IMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 515 ~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
.++..|...|+.++|.++++.+.+.
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7777777777777777777777643
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=1.4e-05 Score=70.73 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...++++.+
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333334444444444444444433332 22333344444444444444444444444433
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=1.7e-05 Score=66.06 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
.+..+...|...|++++|...|+++.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333334444444444443333
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=7.1e-06 Score=75.62 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=101.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 005729 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GY-FPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~ 526 (680)
..|++++|.+.++.+... .......+..+...|...|++++|...+++..+. +. ......+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456677777744444331 1234566777777778888888888888776651 11 12245567777778888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 005729 527 EDVKRLLGNMRAQ----GLLP--NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLIN 599 (680)
Q Consensus 527 ~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 599 (680)
++|...+.+..+. +-.+ ....+..+...+...|++++|...++. ++.+.. ..+... -..++..+..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----al~~~~---~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK----SLVYAQ---QADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----HHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH----HHHHHH---hccchHHHHHHHHHHHH
Confidence 8888888877653 1111 234577788888889999999887763 333322 211111 1235677888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005729 600 AFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~ 619 (680)
++...|++++|...+++..+
T Consensus 156 ~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHH
Confidence 88889999999888887764
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=0.00019 Score=71.25 Aligned_cols=236 Identities=11% Similarity=0.027 Sum_probs=156.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHH
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-G-YLKD 353 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 353 (680)
+.+..++|+++++.++... +-+..+|+..-..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345567888888877643 224556777777777777 4888888888888764 34667777776666666 6 7788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 005729 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE--------SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE----- 420 (680)
Q Consensus 354 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----- 420 (680)
++++++.+.+... .|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 8888888887653 37777777666666655555 8888888887765 3477778777777777665
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHHCC-----CCC
Q 005729 421 --WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL--------------------HHAMAAFDRMLSEG-----IEP 473 (680)
Q Consensus 421 --~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~~ 473 (680)
++++++.++++.... +-|...|+.+-..+.+.|.. .........+...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 678888888877654 56777777666666554432 22222222222211 135
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 517 (680)
....+..++..|...|+.++|.++++.+.+.--+....-|+-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 77788889999999999999999999987542133344444433
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.34 E-value=1.4e-05 Score=67.41 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..++...|++++|.+.|++.++
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333333333333333333333333332 22333333333333333333333333333333
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=2.1e-05 Score=69.62 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 452 (680)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 1233344444444444444444444444433322 2233344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 005729 453 YNCLHHAMAAFDRMLS 468 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~ 468 (680)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=2.2e-05 Score=65.38 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (680)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 519 (680)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777778888888888888888887654 3467788889999999999999999999998875 5678888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 520 LGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS 558 (680)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 558 (680)
+...|++++|...++++.+.. +.+...+..+...+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998863 23566666666655443
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.30 E-value=2.1e-05 Score=66.36 Aligned_cols=108 Identities=9% Similarity=0.101 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH 485 (680)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 485 (680)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 467777888888899999999888887764 5678888888888888899999998888888764 34677888888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIM 516 (680)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 516 (680)
...|++++|.+.|++.++.. +-+...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 88899999999988888765 4445554444
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=1.8e-05 Score=66.99 Aligned_cols=95 Identities=8% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF 486 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 486 (680)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 33334444444444444444444443322 2233444444444444444444444444444332 123344444444444
Q ss_pred HcCChhHHHHHHHHHHH
Q 005729 487 KCGRYDRAEELFEEMQE 503 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~ 503 (680)
+.|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=8.3e-06 Score=75.16 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEM 501 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m 501 (680)
+..+...+...|++++|...+++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444444444555555555554444
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=7.2e-06 Score=80.38 Aligned_cols=94 Identities=13% Similarity=-0.018 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (680)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (680)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+...|.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444555555555555555555554432 2244444445555555555555555555544432 12344444444444
Q ss_pred HHcCCHHHHHHHHHHH
Q 005729 381 ANAGRWESARIVLKEM 396 (680)
Q Consensus 381 ~~~g~~~~A~~~~~~m 396 (680)
...|++++|+..|++.
T Consensus 83 ~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 83 LEMESYDEAIANLQRA 98 (281)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4445555544444444
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=2e-05 Score=66.24 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 33333333334444444444444333332 22233333333444444444444444444433
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=1.5e-05 Score=78.00 Aligned_cols=195 Identities=8% Similarity=-0.013 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (680)
Q Consensus 438 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 517 (680)
.+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356677888889999999999999999988764 3478888999999999999999999999998875 56788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 518 NLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSL 597 (680)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 597 (680)
.++...|++++|...+.+..+.+.. +...+...+....+.. ++ ..+..........+......+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~i~~~l 143 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KK------------KRWNSIEERRIHQESELHSYL 143 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HH------------HHHHHHHHTCCCCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HH------------HHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999988764210 0001111111111110 00 012222333334444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCcCcHHHHHHHHHH
Q 005729 598 INAFGEDQRDAEAFAVLQYMKENGLKPDVV-TYTTLMKALIRV-DKFHKVPAVYEEMIL 654 (680)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 654 (680)
...+ .|++++|++.+++..+ ..|+.. ....+...+.+. +.+++|.++|+++.+
T Consensus 144 ~~l~--~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 144 TRLI--AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3322 6889999998888876 456543 334444444444 667888888887764
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=2.7e-05 Score=65.46 Aligned_cols=120 Identities=5% Similarity=-0.062 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (680)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 483 (680)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888899999999999999999988764 5578889999999999999999999999988764 346788999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
.|.+.|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998875 45677787777777776653
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=2.7e-05 Score=74.82 Aligned_cols=189 Identities=14% Similarity=0.038 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHH------------CCCC------
Q 005729 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTL-------IDCHFKCGRYDRAEELFEEMQE------------RGYF------ 507 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~------ 507 (680)
.++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.+ .|.-
T Consensus 19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 455666666666665543 2234455555 3444444444444444444333 1100
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC
Q 005729 508 --PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD 585 (680)
Q Consensus 508 --p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~ 585 (680)
--...+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..++.. ..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a-----------~~- 163 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA-----------GK- 163 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG-----------GG-
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh-----------hc-
Confidence 001223344556666777777777776665532 43334555555666777777776665411 11
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCC
Q 005729 586 GLKPS----NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD--VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTP 659 (680)
Q Consensus 586 g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 659 (680)
.|+ ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|
T Consensus 164 --~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P 239 (282)
T 4f3v_A 164 --WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HP 239 (282)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SC
T ss_pred --cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 121 22556667777777777777777777764322243 335566666777777777777777777764 44
Q ss_pred C
Q 005729 660 D 660 (680)
Q Consensus 660 d 660 (680)
+
T Consensus 240 ~ 240 (282)
T 4f3v_A 240 E 240 (282)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=2.2e-05 Score=66.44 Aligned_cols=120 Identities=8% Similarity=-0.045 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005729 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIM 516 (680)
Q Consensus 437 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 516 (680)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4456778888889999999999999999988764 3467888899999999999999999999998875 5578888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 517 INLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (680)
Q Consensus 517 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (680)
...+.+.|++++|...+++..+... .+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 9999999999999999999887532 24456666666666554
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.20 E-value=1e-05 Score=72.85 Aligned_cols=119 Identities=8% Similarity=0.091 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCh--hHH
Q 005729 418 RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC-HFKCGRY--DRA 494 (680)
Q Consensus 418 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~A 494 (680)
.|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 3455566666666666666666666666665543 2345566666666 5566776 777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
...|+++.+.. +.+...+..+...+...|++++|...+.++.+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777776654 445666666777777777777777777777764
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=3.4e-05 Score=77.66 Aligned_cols=32 Identities=16% Similarity=0.033 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005729 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSG 365 (680)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 365 (680)
+...+..+...|.+.|++++|...|++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 177 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL 177 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 45677778888888888888888888877653
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.16 E-value=5.8e-05 Score=72.47 Aligned_cols=188 Identities=9% Similarity=-0.013 Sum_probs=93.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------cCCC----
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPK-TATYAAV-------ITALSNSGRTIEAEAVFEELKE------------SGLK---- 332 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~g~~---- 332 (680)
..++...|.+.|.++... .|+ ...|+-+ ..++.+.++..+++..+..-.+ .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 467777777777777764 343 4566655 4555555555555544444333 1100
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HH
Q 005729 333 ----PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN--SF 406 (680)
Q Consensus 333 ----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~ 406 (680)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 002233344555666666666666666665433 322244445555666666666666665332211 010 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 005729 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (680)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555555555543221122 223344444445555555555555555443
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=1.2e-05 Score=68.02 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENG--L 622 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~ 622 (680)
..+..+...+.+.|++++|++.|+..+ + +.|+ ...|..+..+|.+.|++++|++.+++.++.. .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al-----------~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAI-----------E--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----------H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----------H--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 456778899999999999998876322 2 2344 5689999999999999999999999998621 1
Q ss_pred CCC----HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005729 623 KPD----VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRS 669 (680)
Q Consensus 623 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 669 (680)
.++ ..+|..+..++...|++++|++.|++.++. .||+.+...+.+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~ 124 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVKE 124 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHHH
Confidence 112 246778889999999999999999999874 677776655543
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.15 E-value=2.6e-05 Score=68.04 Aligned_cols=97 Identities=9% Similarity=-0.145 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 344555555566666666666666665543 2345566666666666666666666666666554 34455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005729 521 GEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (680)
.+.|++++|...|++.++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666653
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=5.2e-05 Score=76.31 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
+...+..+...|.+.|++++|+..|++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~ 176 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW 176 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3556666677777777777777777766654
No 147
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00035 Score=72.92 Aligned_cols=162 Identities=9% Similarity=0.026 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCC-CHHH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSS-GVEPDT----HFYNVMIDTFGKYNCLHHAMAAFDRMLS----EGIEP-DTIT 477 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~ 477 (680)
+..+...|.+.|++++|.+.+..+... +..++. .+.+.+-..+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555566666666666655554321 001111 1222233333455677777777766543 22222 2456
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQER--GY--FP-CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GL-LP-N--VV 546 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~ 546 (680)
+..+...|...|++++|..+++++... +. .+ ....+..++..|...|++++|..++++.... .. .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677788888888888888888776532 11 11 2456777778888888888888888776543 11 11 1 24
Q ss_pred HHHHHHHHHHhcCChHHHHHHHh
Q 005729 547 TYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
.+..+...+...|++++|...+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 56666777778888888887665
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.0028 Score=62.58 Aligned_cols=194 Identities=11% Similarity=0.098 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hhHHHHH
Q 005729 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR-YDRAEEL 497 (680)
Q Consensus 421 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 497 (680)
+++++.+++.+.... +-+..+|+.-.-.+.+.+ .++++..+++.+.+.. +.|...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555554432 334455544444444444 3566666666666544 3455666655555555665 4666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChH
Q 005729 498 FEEMQERGYFPCTTTYNIMINLLGEQ--------------ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS-GRFD 562 (680)
Q Consensus 498 ~~~m~~~~~~p~~~t~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 562 (680)
+.++++.. +-|...|+.....+.+. +.++++.+.+.+.+.... -|...|+.+-..+.+. |..+
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 66666655 45566666555555443 346777777777777532 2566665554444443 2111
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLIN-----AFGEDQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~p 624 (680)
-. ....+.++++++.++++.+ ..|+. .|..+.- +....|..+++..++.++++ +.|
T Consensus 246 ~~-~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp 306 (331)
T 3dss_A 246 LS-VEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDP 306 (331)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCG
T ss_pred cc-hHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCc
Confidence 11 1122445566666777766 45654 3332221 22235667777777777776 445
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.0019 Score=63.85 Aligned_cols=136 Identities=7% Similarity=-0.011 Sum_probs=81.6
Q ss_pred HcCCHH-HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 277 KAGDAS-KAMRFLGMAQGVGLSPK-TATYAAVITALSNSGR----------TIEAEAVFEELKESGLKPRTKAYNALLKG 344 (680)
Q Consensus 277 ~~g~~~-~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 344 (680)
+.|.++ +|+++++.++.. .|+ ...|+.--..+...++ +++++.+++.+.... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445544 678888887764 344 4456654444433332 466677777766653 3366666666666
Q ss_pred HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 345 YVKMG--YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR-WESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417 (680)
Q Consensus 345 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 417 (680)
+.+.| .++++..+++.+.+... .|..+|+.-.-.+...|. ++++++.++++.+.. +-|...|+.....+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 66666 36777777777776543 366667666666666666 467777777776654 3355566555444443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.11 E-value=2e-05 Score=70.90 Aligned_cols=118 Identities=13% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--HHHH
Q 005729 384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT-FGKYNCL--HHAM 460 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~A~ 460 (680)
|++++|+..+++..... +.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44444444444443332 1233444444444444555555555554444332 2334444444444 4455554 5555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 461 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
..++...+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555432 223445555555566666666666666665554
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.11 E-value=2.2e-05 Score=68.47 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (680)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 518 (680)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455555666666677777777776666543 3356666666677777777777777777766654 445566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005729 519 LLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (680)
++...|++++|...+++.++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777766653
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.09 E-value=1.5e-05 Score=69.53 Aligned_cols=105 Identities=9% Similarity=0.010 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005729 462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL 541 (680)
Q Consensus 462 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 541 (680)
.|+++.+.. +.+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...+++++....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445554432 2245567788889999999999999999999876 66888999999999999999999999999998642
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 542 LPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
.+...+..+..+|...|++++|.+.|+
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 367888999999999999999998876
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=0.00014 Score=59.65 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQ 502 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (680)
.+..+..+|...|++++|.+.|++..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.00019 Score=58.83 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (680)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 519 (680)
...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556667777888888888888888887654 3467788888889999999999999999988875 4568888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 520 LGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
+...|++++|...+.+..+.+. .+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 9999999999999999987532 2444444443
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00012 Score=61.52 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005729 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (680)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 522 (680)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2244555555555555555555555555555543 3345555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 005729 523 QERWEDVKRLLGNMRA 538 (680)
Q Consensus 523 ~g~~~~A~~~~~~m~~ 538 (680)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666655555554
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=8.6e-05 Score=62.31 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG--L 622 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~ 622 (680)
...+..+...+...|++++|...++... .. .+.+...+..+..+|...|++++|..+++++.+.. .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----------~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAK-----------EL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------hc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 4567778888999999999888765322 21 13356788999999999999999999999998732 1
Q ss_pred CCC----HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Q 005729 623 KPD----VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMKQT 677 (680)
Q Consensus 623 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~~ 677 (680)
.++ ..++..+..++.+.|++++|.+.++++++. .|+...+..+....+..++.
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHh
Confidence 122 678889999999999999999999999985 56787777777777766654
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00024 Score=74.10 Aligned_cols=170 Identities=11% Similarity=-0.012 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQER-GYFPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLP-NVVT 547 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~ 547 (680)
+..+...|.+.|++++|.+++..+.+. +..++. ...+.+-..+...|+.+++..++.+.... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666777777777777777665432 101111 11222223334456777777777665432 2222 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC
Q 005729 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN--GLKP 624 (680)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p 624 (680)
+..+...|...|++++|..+++... ......+-.+.. .+|..++..|...|++++|..++++.... .+..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLL-------REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-------HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHH-------HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 6777777888888888777765322 122222222222 36777778888888888888887776631 1111
Q ss_pred C----HHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 625 D----VVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 625 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
+ ...+..+...+...|++++|...+.+..+
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 23455566666777888888777776653
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.99 E-value=0.00012 Score=67.09 Aligned_cols=60 Identities=5% Similarity=0.040 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005729 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (680)
.+..+..+|...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33334444444444444444444433321 2233334444444444444444444444433
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00024 Score=59.54 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF 486 (680)
Q Consensus 407 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 486 (680)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444455555555555555555554442 3345556666666666666666666666665543 234556666666666
Q ss_pred HcCChhHHHHHHHHHHHC
Q 005729 487 KCGRYDRAEELFEEMQER 504 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~ 504 (680)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=0.00011 Score=67.34 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
..+..+..+|.+.|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455555555666666666666666655543 2345555556666666666666666666655543 33444555555444
Q ss_pred HhcCCHHHHH
Q 005729 521 GEQERWEDVK 530 (680)
Q Consensus 521 ~~~g~~~~A~ 530 (680)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=8e-05 Score=62.53 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=49.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 005729 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY--FPC----TTTYNIM 516 (680)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~~l 516 (680)
+..+...+...|+++.|...|+...+.. +.+...+..+...|...|++++|...+++..+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444555555555555555544432 22444555555555555555555555555544320 111 4455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 005729 517 INLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 517 i~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
...+...|++++|...+.++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55566666666666666666553
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.97 E-value=0.00016 Score=64.04 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (680)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 519 (680)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555566666666665555443 2245556666666666666666666666666554 3445566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 005729 520 LGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~ 539 (680)
+...|++++|...|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666553
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.96 E-value=0.00016 Score=60.89 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (680)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 363 (680)
++..+...+.+.|++++|++.|++.++.. +.+...|+.+..+|.+.|++++|++.+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44555555555555555555555555542 23445555555555555555555555555443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.94 E-value=0.00047 Score=58.50 Aligned_cols=94 Identities=13% Similarity=-0.010 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 553 (680)
+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+.+..+.+ +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45555556666666666666666666665553 3345556666666666666666666666666542 124556666666
Q ss_pred HHHhcCChHHHHHHHh
Q 005729 554 IYGQSGRFDDAIECLE 569 (680)
Q Consensus 554 ~~~~~g~~~~A~~~~~ 569 (680)
+|...|++++|+..++
T Consensus 86 ~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 86 CQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 6666666666665554
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00035 Score=60.11 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005729 444 NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (680)
Q Consensus 444 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (680)
..+...|...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 69 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 69 RNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333444444444443333321 11233333444444444444444444444433
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=0.0001 Score=64.54 Aligned_cols=136 Identities=15% Similarity=0.052 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLP-NVV 546 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~ 546 (680)
++..+...|...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666666677777777777766654310 011 135555666666777777777777665542 1000 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
.+..+...+...|++++|.+.++. ++++... .+..+. ...+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~----a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLK----HLAIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHH---ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666667777777777766542 2222211 111111 22456666666667777777776666554
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.92 E-value=9.5e-05 Score=60.06 Aligned_cols=95 Identities=7% Similarity=0.048 Sum_probs=47.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 005729 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP--CTTTYNIMINLL 520 (680)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~ 520 (680)
+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444445555555555555544432 2234445555555555555555555555555443 22 344555555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHC
Q 005729 521 GEQ-ERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 521 ~~~-g~~~~A~~~~~~m~~~ 539 (680)
.+. |++++|.+.+.+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 5555555555555543
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.92 E-value=8.8e-05 Score=63.93 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=34.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 005729 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA 494 (680)
Q Consensus 415 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 494 (680)
+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 333344444444443333322 2233333344444444444444444444443332 12233344444444444444444
Q ss_pred HHHHHHHH
Q 005729 495 EELFEEMQ 502 (680)
Q Consensus 495 ~~~~~~m~ 502 (680)
...|++..
T Consensus 106 ~~~~~~al 113 (142)
T 2xcb_A 106 ESGFYSAR 113 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00035 Score=61.63 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGL---------KPS-NLALNSLINAFGEDQRDAEAFAVL 614 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~---------~p~-~~~~~~li~~~~~~g~~~~A~~~~ 614 (680)
...+......+.+.|++++|+..|+ +|+.++.......- .|. ...|..+..+|.+.|++++|+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~----~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYR----DALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456667777888888888887765 34444433332211 122 247889999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 615 QYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 615 ~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
++.++. .| +...|..+..+|...|++++|...+++.++. .|+..
T Consensus 87 ~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 87 SEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 999984 45 6789999999999999999999999999985 66654
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.91 E-value=0.00026 Score=60.21 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (680)
Q Consensus 438 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 517 (680)
.+...+..+...+...|++++|...|....+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345556666666666666666666666665543 2345566666666666777777777776666654 44566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005729 518 NLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~ 538 (680)
..+...|++++|...+.+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 667777777777777766654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=0.00048 Score=59.23 Aligned_cols=113 Identities=18% Similarity=0.109 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005729 438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTY 513 (680)
Q Consensus 438 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 513 (680)
.+...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 456777788888888888888888888887653 45 6778888999999999999999999998875 5568888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (680)
Q Consensus 514 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 554 (680)
..+..++...|++++|...+++..+... .+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHH
Confidence 8899999999999999999999988532 244444444433
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=0.00023 Score=62.91 Aligned_cols=97 Identities=9% Similarity=-0.048 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (680)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (680)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555442 2244555555555555555555555555555443 12455555555556
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 005729 381 ANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 381 ~~~g~~~~A~~~~~~m~~~ 399 (680)
...|++++|+..|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666665555443
No 173
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.89 E-value=0.00016 Score=62.21 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 521 (680)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555566666666666666665543 2345556666666666666666666666665554 344555555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005729 522 EQERWEDVKRLLGNMRA 538 (680)
Q Consensus 522 ~~g~~~~A~~~~~~m~~ 538 (680)
..|++++|...+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.88 E-value=0.00015 Score=58.82 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=38.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHH
Q 005729 305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP--DEHTYSLLIDAYAN 382 (680)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 382 (680)
.+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 33344444444444444444443332 1233344444444444444444444444444332 11 23444444444444
Q ss_pred c-CCHHHHHHHHHHHHH
Q 005729 383 A-GRWESARIVLKEMEV 398 (680)
Q Consensus 383 ~-g~~~~A~~~~~~m~~ 398 (680)
. |++++|.+.+++...
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CSSCSHHHHHHHHHHGG
T ss_pred HhCCHHHHHHHHHHHhh
Confidence 4 444444444444433
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.87 E-value=0.00015 Score=60.87 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 549 TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN----LALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 549 ~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 624 (680)
..+...+.+.|++++|.+.++ ..... .|+. ..+..+..++.+.|++++|+..++++.+. .|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~-----------~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p 70 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFL-----------SFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YP 70 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----------HHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHhCCHHHHHHHHH-----------HHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CC
Confidence 345677888899988887765 33321 2332 47888999999999999999999999984 34
Q ss_pred C----HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 005729 625 D----VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMK 675 (680)
Q Consensus 625 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k 675 (680)
+ ...+..+..++.+.|++++|...++++++. .|+.........-+..++
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSDAARVAQERLQSIR 123 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHC
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHH
Confidence 3 677888999999999999999999999986 566655555544444443
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.82 E-value=0.00014 Score=63.50 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----H
Q 005729 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS-PK----TATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----T 335 (680)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~ 335 (680)
.++..+...|...|++++|++.+++..+.... .+ ..++..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777788888888888888776542100 11 135666667777777777777777665432100 11 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 336 KAYNALLKGYVKMGYLKDAEFVVSEMERS----GVL-PDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
..+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34555556666666666666666555431 100 01223444445555555555555555443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.81 E-value=0.00012 Score=77.47 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=63.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 005729 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (680)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 457 (680)
..|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666666665543 2245566666666666666666666666665553 344555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 005729 458 HAMAAFDRMLSEGIEPDTITWNTLIDC--HFKCGRYDRAEELFE 499 (680)
Q Consensus 458 ~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 499 (680)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666655442 1122233333333 555566666666555
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.77 E-value=0.00057 Score=59.17 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHH
Q 005729 514 NIMINLLGEQERWEDVKRLLGNMRAQGLL------PN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVM 582 (680)
Q Consensus 514 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~------p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m 582 (680)
......+.+.|++++|...|++.++.... .+ ...|..+..++.+.|++++|+..++ +|+++|+..
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~----kAL~l~n~~ 90 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD----KALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHhhhcc
Confidence 33444455556666666666655553211 02 2388889999999999999998765 566666665
Q ss_pred HHCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 583 RTDGLKPSNL-AL----NSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 583 ~~~g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
.+ +.|+.. .| .....++...|++++|+..|++..+
T Consensus 91 ~e--~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GE--LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CC--TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cc--CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 54 567765 77 8888899999999999999998876
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.76 E-value=0.00027 Score=58.93 Aligned_cols=89 Identities=7% Similarity=-0.065 Sum_probs=35.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 351 (680)
...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...+.+.|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 333444444444444444444321 1123334444444444444444444444444332 11333344444444444444
Q ss_pred HHHHHHHHHHH
Q 005729 352 KDAEFVVSEME 362 (680)
Q Consensus 352 ~~A~~~~~~m~ 362 (680)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=0.0003 Score=58.61 Aligned_cols=89 Identities=10% Similarity=-0.041 Sum_probs=41.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005729 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (680)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 527 (680)
..+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33444444555555444444432 2234444444445555555555555555544443 233444444444555555555
Q ss_pred HHHHHHHHHHH
Q 005729 528 DVKRLLGNMRA 538 (680)
Q Consensus 528 ~A~~~~~~m~~ 538 (680)
+|...+++.++
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.69 E-value=0.0004 Score=73.11 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 335 TKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (680)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 363 (680)
...|..+...|.+.|++++|...|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~ 296 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455555555666666666666655554
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.67 E-value=0.001 Score=57.57 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-----LALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (680)
..+......+.+.|++++|+..|+..++ +-....... ..+. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEE-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTS-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchh-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456677888899999999988763222 211100000 0022 38999999999999999999999999982
Q ss_pred -----CCCCCH-HHH----HHHHHHHHhcCCcCcHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 005729 621 -----GLKPDV-VTY----TTLMKALIRVDKFHKVPAVYEEMILS-----GCTPDRKARAMLRS 669 (680)
Q Consensus 621 -----g~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~~~~~~l~~ 669 (680)
.+.|+. ..| .....++...|++++|+..|++.++. |+.+..........
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 117764 577 88999999999999999999999853 66666554443333
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00035 Score=73.55 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=97.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 005729 519 LLGEQERWEDVKRLLGNMRAQ---GLLP----NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591 (680)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~ 591 (680)
.+...|++++|..++++.++. -+.+ ...+++.|..+|...|++++|..+++ ++++++.+..... .|+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----~aL~i~~~~lG~~-Hp~~ 392 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR----RMVDGYMKLYHHN-NAQL 392 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSCTT-CHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHcCCC-CHHH
Confidence 345678888888888877643 1222 24678899999999999999998765 5666666554332 3443
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 592 -LALNSLINAFGEDQRDAEAFAVLQYMKE-----NGLK-PD-VVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 592 -~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
.+++.|...|...|++++|+.++++..+ .|-. |+ ..+...+..++...+.+++|..+|.++.+.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999998874 3422 22 234556667888899999999999999753
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.64 E-value=0.0016 Score=54.40 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=26.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
.+..+..++.+.|++++|...|+...+... .+ ...+..+..+|.+.|++++|...|+++.+.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333344444444444444444444443221 11 233444444444455555555555444443
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.0003 Score=74.08 Aligned_cols=131 Identities=12% Similarity=0.002 Sum_probs=95.9
Q ss_pred HHHHcCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHH
Q 005729 484 CHFKCGRYDRAEELFEEMQER---GYFP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-----GL-LP-NVVTYT 549 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~---~~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~ 549 (680)
.+...|++++|..++++.++. -+.+ -..+++.|..+|...|++++|..++.+.++. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888877642 1112 2456888888889999999998888887642 22 12 245788
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
.|...|...|++++|..+++ +|++++........ |+. .+.+.+..++...+.+++|..+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~----~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMIC----KAYAILLVTHGPSH-PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----HHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH----HHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997765 67777666543221 332 3667788888899999999999999986
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.59 E-value=0.00077 Score=70.92 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 370 EHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
...|..+...|.+.|++++|+..|++...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~ 296 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44566666667777777777777766654
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00068 Score=68.99 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 370 EHTYSLLIDAYANAGRWESARIVLKEMEV 398 (680)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (680)
...+..+...|.+.|++++|++.|++..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777778888888777776654
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.57 E-value=0.00023 Score=75.36 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=55.9
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (680)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 530 (680)
.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555554432 2234555555555555555555555555555543 334555555555555555566665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHH
Q 005729 531 RLLGNMRAQGLLPNVVTYTTLVDI--YGQSGRFDDAIECL 568 (680)
Q Consensus 531 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~ 568 (680)
+.+++..+.... +...+..+..+ +.+.|++++|++.+
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555555553211 22233333333 55555555555544
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=0.0001 Score=61.01 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=76.3
Q ss_pred cCChHHHHHHHhhhHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 558 SGRFDDAIECLEGLSDQAVNAFRVMRTDGL-KPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635 (680)
Q Consensus 558 ~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 635 (680)
.|++++|+..| ++..+.+. .|+ ...|..+..+|...|++++|+..+++..+.. +-+...+..+..+
T Consensus 3 ~g~~~~A~~~~-----------~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 3 LGLEAQAVPYY-----------EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMV 70 (117)
T ss_dssp ----CCCHHHH-----------HHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CCcHHHHHHHH-----------HHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 45666666554 45544321 133 3488999999999999999999999999842 3367889999999
Q ss_pred HHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Q 005729 636 LIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYMKQT 677 (680)
Q Consensus 636 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~k~~ 677 (680)
+.+.|++++|.+.+++.++. .|+.........++....+.
T Consensus 71 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAE--TSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--HCCCHHHHHTHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 55555555566666655443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.55 E-value=0.00086 Score=59.02 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|...+.+.++.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34567778888888888888888888888775 556778888888888888888888888888874
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.55 E-value=0.00079 Score=68.53 Aligned_cols=140 Identities=9% Similarity=-0.033 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC 484 (680)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 484 (680)
...+..+...+.+.|++++|.+.|++..+.- +.. ......+ ...+.. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHH
Confidence 4567778888888899999988888876420 000 0000111 111110 1245677788888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005729 485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564 (680)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 564 (680)
|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|...++++.+... .+...+..+...+.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 45677888888888888888888888888887532 2566677777777776666655
Q ss_pred HH
Q 005729 565 IE 566 (680)
Q Consensus 565 ~~ 566 (680)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.54 E-value=0.00016 Score=59.76 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005729 453 YNCLHHAMAAFDRMLSEG--IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (680)
Q Consensus 453 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 530 (680)
.|++++|...|++..+.+ -+.+...|..+..+|.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666666542 12234456666666667777777777777766654 445666666666677777777777
Q ss_pred HHHHHHHHC
Q 005729 531 RLLGNMRAQ 539 (680)
Q Consensus 531 ~~~~~m~~~ 539 (680)
..+.+.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.48 E-value=0.00027 Score=61.03 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=87.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 005729 521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLIN 599 (680)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~ 599 (680)
.+.+.+++|.+.+++..+.+. .+...|..+..++...++++.+...+ ++.++|+..|++..+ +.|+. .+|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al-~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAK-QMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhH-hHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 455677888888888887642 27788888888888887776555444 356677778888777 45654 58999999
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHc
Q 005729 600 AFGEDQ-----------RDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILS 655 (680)
Q Consensus 600 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 655 (680)
+|...| ++++|++.|+++.+ +.|+...|...+... ++|.+++-++-..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 998774 89999999999998 678876666555433 4455555444433
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=0.0063 Score=65.54 Aligned_cols=170 Identities=9% Similarity=-0.002 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 005729 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR----------WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG-- 419 (680)
Q Consensus 352 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-- 419 (680)
++|.+.++++.+.+.. +..+|+.--..+...|+ ++++++.++++.+... -+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 3445555555544321 34444444444444444 5556666665555432 34555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------
Q 005729 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN-CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC---------- 488 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------- 488 (680)
+++++++.++++.+.. +-+..+|+.-...+.+.| ..+++.+.++++.+.. +-|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 4466666666655543 345555555555555555 5666666666665544 23555666555555442
Q ss_pred ----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005729 489 ----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (680)
Q Consensus 489 ----g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 526 (680)
+.++++++.+++..... +-+...|+.+-..+.+.++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 44677888888877765 55677777777777666653
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.43 E-value=0.0064 Score=65.48 Aligned_cols=175 Identities=9% Similarity=0.005 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005729 384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE----------WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (680)
Q Consensus 384 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 453 (680)
...++|++.++++...++ -+...|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345688999999988753 466778777777777776 899999999998865 66788888888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 005729 454 N--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG-RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ------- 523 (680)
Q Consensus 454 g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~------- 523 (680)
+ +++++.+.++++.+.. +.+...|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 7899999999999876 458889999888888889 8999999999999886 66888999888777663
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005729 524 -------ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (680)
Q Consensus 524 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (680)
+.++++.+.+.+++.... -+...|..+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 567999999999988642 267888888888888777444
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.40 E-value=0.0053 Score=52.25 Aligned_cols=111 Identities=12% Similarity=-0.057 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 005729 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDA 354 (680)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 354 (680)
+++++|++.|++..+.| .++.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666555 22222 4445555555666666666666543 44555556666655 5566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSH 400 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 400 (680)
..+|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666553 45555556666655 556666666666555543
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.40 E-value=0.0065 Score=51.71 Aligned_cols=110 Identities=6% Similarity=-0.102 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 005729 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAE 495 (680)
Q Consensus 420 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 495 (680)
++++|++.|++..+.| .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 33332 5555555556666666666666643 55566666666666 56677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 005729 496 ELFEEMQERGYFPCTTTYNIMINLLGE----QERWEDVKRLLGNMRAQG 540 (680)
Q Consensus 496 ~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 540 (680)
++|++..+.| +...+..|...|.. .++.++|...+++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766655 45556666666666 667777777777766654
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00046 Score=69.41 Aligned_cols=147 Identities=13% Similarity=0.024 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005729 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (680)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 346 (680)
.+..+...|.+.|++++|+..|++.... .|+... +...++..++...+ . ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 3556667778889999999999887763 344331 11122222222211 0 125555666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHH
Q 005729 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG-YRDRGEWQRTF 425 (680)
Q Consensus 347 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~ 425 (680)
+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+... .+...+..+... ....+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 22456666666666666666666666666544321 123333333333 22334555566
Q ss_pred HHHHHHHHC
Q 005729 426 QVLKEMKSS 434 (680)
Q Consensus 426 ~l~~~m~~~ 434 (680)
.+|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 666665543
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00054 Score=68.86 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005729 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID 448 (680)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 448 (680)
....+..+...|.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35677778888888999999999998877642 33221 122233333322211 125666777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 005729 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL-LGEQERWE 527 (680)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~~ 527 (680)
+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777654 3356677777777777788888887777776543 2233344444333 22345556
Q ss_pred HHHHHHHHHHHC
Q 005729 528 DVKRLLGNMRAQ 539 (680)
Q Consensus 528 ~A~~~~~~m~~~ 539 (680)
++..++.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666667666553
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00056 Score=55.43 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-------VV 546 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 546 (680)
+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|...+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34566677777777888888888888777664 456777777777888888888888888887764 333 44
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 005729 547 TYTTLVDIYGQSGRFDDAIEC 567 (680)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~ 567 (680)
.+..+..++...|+.+.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 555566666666665555443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.11 E-value=0.0046 Score=50.49 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
++..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+|.+.|++++|...|++.++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555532 2345689999999999999999999999999842 33577899999999999999999999999987
Q ss_pred cCC-CCCHHHHHHHHHHHHHHHh
Q 005729 655 SGC-TPDRKARAMLRSALRYMKQ 676 (680)
Q Consensus 655 ~g~-~pd~~~~~~l~~a~~~~k~ 676 (680)
..- ..+......+...++...+
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 422 2345556666666655443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.05 E-value=0.0068 Score=46.65 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (680)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 554 (680)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666666553 3455566666666666677777777666666542 1244555555554
Q ss_pred HHh
Q 005729 555 YGQ 557 (680)
Q Consensus 555 ~~~ 557 (680)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.01 E-value=0.0054 Score=50.02 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 459 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554433 2345566666666666666666666666666554 34455666666666666666666666666654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.94 E-value=0.0087 Score=45.99 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 520 (680)
..+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555555566666666666666655443 2345556666666666666666666666666553 33445555444444
Q ss_pred H
Q 005729 521 G 521 (680)
Q Consensus 521 ~ 521 (680)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.88 E-value=0.003 Score=54.48 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR----------YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 523 (680)
+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++.+ +-+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34555555555555443 2355555555555555544 347777777777665 44566777777777665
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 524 -----------ERWEDVKRLLGNMRAQGLLPNVVTYTT 550 (680)
Q Consensus 524 -----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ 550 (680)
|++++|.+.|++.++. .|+...|..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 3788888888888873 565544433
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0037 Score=50.39 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444555555555555555555555432 224455555555555556666666665555544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.82 E-value=0.0054 Score=48.71 Aligned_cols=64 Identities=27% Similarity=0.250 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 538 (680)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666666554 33455566666666666666666666666554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.73 E-value=0.0063 Score=48.29 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcC-CCCCHHHHHHH
Q 005729 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSG-CTPDRKARAML 667 (680)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~~~~~l 667 (680)
+...|..+..+|.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|.+.+++.++.. -.++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 4568899999999999999999999999984 44 56789999999999999999999999998652 24555666666
Q ss_pred HHHHHH
Q 005729 668 RSALRY 673 (680)
Q Consensus 668 ~~a~~~ 673 (680)
...+..
T Consensus 84 ~~~l~~ 89 (100)
T 3ma5_A 84 QDAKLK 89 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.11 Score=51.58 Aligned_cols=170 Identities=15% Similarity=0.037 Sum_probs=84.2
Q ss_pred HHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHh
Q 005729 167 SILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACA--RND---DLEKALNLMSKMRQDGYHCDF-INYSLVIQSLTR 240 (680)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 240 (680)
..++.++.-.-...++.......+.++.+|...+++.. ..+ ...+|+.+|++..+.. |+. ..|..+.-++..
T Consensus 168 ~~I~~aL~~~l~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~ 245 (372)
T 3ly7_A 168 ESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIV 245 (372)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 33444444333333443444456677888888876654 333 3589999999999874 653 233322222210
Q ss_pred ---cCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 005729 241 ---TNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTI 317 (680)
Q Consensus 241 ---~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 317 (680)
.+......... ...+.+....+ .. .+.+..+|..+...+...|+++
T Consensus 246 ~~~~~~~~~~~~~~-----------------------------l~~a~~a~~a~-~~-~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 246 RHSQHPLDEKQLAA-----------------------------LNTEIDNIVTL-PE-LNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHSCCCHHHHHH-----------------------------HHHHHHHHHTC-GG-GTTCHHHHHHHHHHHHHHTCHH
T ss_pred HhccCCCchhhHHH-----------------------------HHHHHHHHHhc-cc-CCcCHHHHHHHHHHHHhCCCHH
Confidence 01001000000 01111111000 11 1334555555555555556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005729 318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (680)
Q Consensus 318 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 373 (680)
+|...+++....+ |+...|..+...+.-.|+.++|.+.+++.... .|...+|
T Consensus 295 ~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 295 ESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 6666666666653 45555555556666666666666666666554 3444443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.009 Score=61.69 Aligned_cols=93 Identities=4% Similarity=-0.057 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HH
Q 005729 522 EQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LA 593 (680)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~ 593 (680)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..+++ ++++++++..-. -.|+. .+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----~aL~i~~~~lG~-~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ----KIIKPYSKHYPV-YSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSCS-SCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHHHcCC-CChHHHHH
Confidence 346788888888776642 12222 4678889999999999999998766 566666655432 23444 38
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 594 LNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 594 ~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
|+.|...|...|++++|+.++++..+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999998874
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.021 Score=58.99 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=73.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 005729 517 INLLGEQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP 589 (680)
Q Consensus 517 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p 589 (680)
+..+.+.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..+++ ++++++++..-. ..|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~----~~L~i~~~~lg~-~Hp 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT----RTMEPYRIFFPG-SHP 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHHSCS-SCH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH----HHHHhHHHHcCC-CCh
Confidence 33455678888888888888753 12222 4578889999999999999998765 566666655432 234
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 590 SN-LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 590 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+. .+|+.|...|...|++++|+.++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43 3899999999999999999999998874
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.026 Score=48.07 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcCcHHHH
Q 005729 574 QAVNAFRVMRTDGLKPSNLALNSLINAFGEDQ---RDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVPAV 648 (680)
Q Consensus 574 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 648 (680)
.+.+.|.+....|. ++..+...+.+++++.+ +.++++.+++...+.. .| +...+..|.-++.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444555555554 78888888999999988 6779999999998853 35 356677788889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 649 YEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 649 ~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
++.+++ +.|+..--..+.+.+.+.
T Consensus 94 ~~~lL~--ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 94 VRGLLQ--TEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHHHHHHHHH
Confidence 999998 589887777776666643
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.2 Score=56.51 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005729 450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDV 529 (680)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 529 (680)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 34556666666664332 3556777777777777777777777776543 23344444556666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005729 530 KRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (680)
Q Consensus 530 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (680)
.++.+.....|. ++....+|.+.|++++|++++
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 555554444331 233344455566666665543
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.0065 Score=62.74 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=68.3
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HH
Q 005729 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKE-----NG-LKPDV-VT 628 (680)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~ 628 (680)
..|++++|..+++ +++++..+.... -.|+. .+++.|..+|...|++++|+.++++..+ .| -.|+. .+
T Consensus 310 ~~g~~~eA~~~~~----~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICE----LSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHH----HHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred hccCHHHHHHHHH----HHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 4578899887765 333333322211 12333 4899999999999999999999999874 33 22333 57
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHH
Q 005729 629 YTTLMKALIRVDKFHKVPAVYEEMIL 654 (680)
Q Consensus 629 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 654 (680)
++.|...|..+|++++|..++++.++
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 88999999999999999999999874
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.18 E-value=0.025 Score=44.06 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHH
Q 005729 589 PSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKAR 664 (680)
Q Consensus 589 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 664 (680)
.+...+..+..++...++ .++|..++++..+ +.| +......+...+.+.|++++|+..|+++++.. |+...+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccH
Confidence 456678888888865555 7999999999998 455 56788888999999999999999999999864 333334
Q ss_pred HHHHHHHHHHH
Q 005729 665 AMLRSALRYMK 675 (680)
Q Consensus 665 ~~l~~a~~~~k 675 (680)
..+.+.+..-+
T Consensus 80 ~~i~~~I~~A~ 90 (93)
T 3bee_A 80 VTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555433
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.13 E-value=0.12 Score=51.32 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHH
Q 005729 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAML 667 (680)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 667 (680)
..+..+|..+...+...|++++|+..++++.+. .|+...|..+...+.-.|+.++|.+.|++.++. .|...++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 456678888888888889999999999999995 488888888899999999999999999999985 7777776544
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.31 Score=55.01 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=56.5
Q ss_pred HHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 276 AKAGDASKAMR-FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 276 ~~~g~~~~A~~-~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (680)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 45677777766 44211 112223566666777777777766553211 112334566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
.++.+.+ .+...|..|...+.+.++++.|.+.|.++
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7765433 25667777777777777777777776655
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.06 E-value=0.033 Score=57.50 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=70.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHH
Q 005729 482 IDCHFKCGRYDRAEELFEEMQERG---YFPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ-----GL-LP-NVVT 547 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~ 547 (680)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.++.+++.. |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888888887531 2222 356788888888899999999888877642 21 22 2457
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH
Q 005729 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR 583 (680)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~ 583 (680)
++.|...|...|++++|..+++ +|++++....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~----~Al~i~~~~l 405 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLR----LAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHH----HHHHHHHHhc
Confidence 8889999999999999997765 6666666553
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.91 E-value=0.061 Score=51.10 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-CC
Q 005729 573 DQAVNAFRVMRTDGLKPS---NLALNSLINAFGED-----QRDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRV-DK 641 (680)
Q Consensus 573 ~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~-g~ 641 (680)
.++...+++..+ +.|+ ...|..|...|.+. |+.++|.+.|++.++ +.| +..++....+.+++. |+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCC
Confidence 345555555555 5677 45899999999984 999999999999999 667 377888889988885 99
Q ss_pred cCcHHHHHHHHHHcCCC--CCHHHHHHH
Q 005729 642 FHKVPAVYEEMILSGCT--PDRKARAML 667 (680)
Q Consensus 642 ~~~A~~~~~~m~~~g~~--pd~~~~~~l 667 (680)
.+++.+++++.++.... |+......+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999999998877 777655443
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.79 E-value=0.041 Score=43.01 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCH-HHH--HHHHHHH
Q 005729 597 LINAFGEDQRDAEAFAVLQYMKENGLKP-DVV-TYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDR-KAR--AMLRSAL 671 (680)
Q Consensus 597 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~--~~l~~a~ 671 (680)
....+.+.|++++|+..++++.+. .| +.. .|..+..+|.+.|++++|.+.+++.++.. |+. ..+ ..+.+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQARKMVMDIL 81 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 455677889999999999998874 44 556 88888889999999999999999998763 333 333 6667777
Q ss_pred HHHHhh
Q 005729 672 RYMKQT 677 (680)
Q Consensus 672 ~~~k~~ 677 (680)
...++.
T Consensus 82 ~~~~~~ 87 (99)
T 2kc7_A 82 NFYNKD 87 (99)
T ss_dssp HHHCCT
T ss_pred HHHHHH
Confidence 666554
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.51 E-value=0.078 Score=41.35 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTT-TYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
...+.+.|++++|...|++..+.. +.+.. .|..+..++...|++++|...+++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445566677777777777776654 34455 6666667777777777777777777664
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.32 E-value=0.12 Score=41.07 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHH
Q 005729 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKEN------GLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKA 663 (680)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 663 (680)
+..-.-.|+..+.+.|+++.|..+++.+.+. +-.+...++..|..++.+.|++++|..+++++++ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 3344557888899999999999999998862 1123567889999999999999999999999998 4777654
Q ss_pred H
Q 005729 664 R 664 (680)
Q Consensus 664 ~ 664 (680)
.
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.09 E-value=1.4 Score=38.46 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=66.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005729 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (680)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 45678888888877665 2566788888888888888888888877653 33455556667777666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
..+-+.....| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555554443 1344445566677777777777543
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.07 E-value=1.2 Score=36.61 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=97.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005729 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (680)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (680)
.-.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+. +. ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FD------------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cC------------cHhhhcHHHHH
Confidence 34677788888888777643 5666777776666666666666666655432 21 12345555444
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcH
Q 005729 566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKV 645 (680)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 645 (680)
..+- . ...+....+..++.+..+|+.+.-.+++..+.. +.+|++.....+..||.+.|+..+|
T Consensus 82 ~C~~-------------~---~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 82 ECGV-------------I---NNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp HHHH-------------H---TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-------------H---hcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhH
Confidence 4431 0 123445667778888899999999999988644 3578899999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 005729 646 PAVYEEMILSGCT 658 (680)
Q Consensus 646 ~~~~~~m~~~g~~ 658 (680)
.+++++.-++|+.
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 9999999998853
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.50 E-value=1.6 Score=35.88 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005729 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL 542 (680)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (680)
+....+..++.+...|+-++-.+++.++.... +|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666666666666666666654332 566666666666777777777777777666666643
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.43 E-value=1.5 Score=38.15 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=53.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES 388 (680)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 388 (680)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344566666666665554 2456666666666666666666666665542 2233444455555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005729 389 ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE 430 (680)
Q Consensus 389 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 430 (680)
..++-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444443333321 33334444455555555555533
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.22 E-value=0.77 Score=35.41 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 473 PDTITWNTLIDCHFKCGR---YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 473 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
.+...+..+..++...++ .++|..+|++.++.+ +-+......+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555544433 567777777766665 555666666666667777777777777777665
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.74 E-value=0.34 Score=39.59 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcCcHHHHHHHH
Q 005729 578 AFRVMRTDGLKPSNLALNSLINAFGEDQRDAE---AFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVPAVYEEM 652 (680)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 652 (680)
-|......|. ++..+--.+.+++.+.....+ ++.+++...+.+ .| .......|.-++.+.|++++|.++++.+
T Consensus 23 ~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 23 KFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444343 777887789999999887766 888888887753 23 3345556778899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHH
Q 005729 653 ILSGCTPDRKARAMLRSALR 672 (680)
Q Consensus 653 ~~~g~~pd~~~~~~l~~a~~ 672 (680)
++ +.|+..-...|...+.
T Consensus 101 L~--~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 101 LQ--TEPQNNQAKELERLID 118 (126)
T ss_dssp HH--HCTTCHHHHHHHHHHH
T ss_pred HH--hCCCCHHHHHHHHHHH
Confidence 98 5898876666666655
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.72 E-value=0.41 Score=40.69 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 005729 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAG---RWESARIVLKEMEVSHAKP--NSFIYSRILAGYRDRGEWQRTFQV 427 (680)
Q Consensus 353 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~l 427 (680)
.+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+|++..+.. .| ....+-.+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444433332 34445445555555544 3445555555554432 11 233344444455555555555555
Q ss_pred HHHHHHC
Q 005729 428 LKEMKSS 434 (680)
Q Consensus 428 ~~~m~~~ 434 (680)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.63 E-value=1.3 Score=44.69 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHH-----cCCCCCHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMIL-----SGCTPDRKARAML 667 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~l 667 (680)
+...++..+...|++++|+..++.+.... +-+...|..+|.+|.+.|+..+|.+.|+++.+ .|+.|...+....
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34557778888999999999999888732 33788999999999999999999999998764 5999999988766
Q ss_pred HHHHH
Q 005729 668 RSALR 672 (680)
Q Consensus 668 ~~a~~ 672 (680)
...++
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.33 E-value=0.85 Score=35.95 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=8.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 005729 340 ALLKGYVKMGYLKDAEFVVSE 360 (680)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~ 360 (680)
.+...+.+.|+++.|...|+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 334444444444444444443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.34 E-value=1.7 Score=41.25 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHH
Q 005729 317 IEAEAVFEELKESGLKPR---TKAYNALLKGYVKM-----GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-GRWE 387 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~ 387 (680)
..|..++++.++. .|+ -..|..|...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445554443 233 33455555555552 55666666666555543222344555555555553 5556
Q ss_pred HHHHHHHHHHHCCCC
Q 005729 388 SARIVLKEMEVSHAK 402 (680)
Q Consensus 388 ~A~~~~~~m~~~~~~ 402 (680)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666555554443
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.85 E-value=12 Score=36.05 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=61.5
Q ss_pred ccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCh--HHHHHH
Q 005729 175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDS--SLLQKL 252 (680)
Q Consensus 175 ~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~~~~~l 252 (680)
..|++.||.. .|.++..-|.+.+++++|++++..-.. .+.+.|+... .++..+
T Consensus 25 ~~G~yYEAhQ----------~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 25 KAGDYYEAHQ----------TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHTCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHH
T ss_pred hccChHHHHH----------HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHH
Confidence 4466666655 677777888888888888887655322 1122222211 222334
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHh----CCC--CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005729 253 YKEIECDKIELDGQLLNDVIVGFAKAGDAS-KAMRFLGMAQG----VGL--SPKTATYAAVITALSNSGRTIEAEAVF 323 (680)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~----~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~ 323 (680)
.+-..+.+++++......++..+.....-+ +=.++.+.+.+ .|- .-+......+...|.+.|++.+|..-|
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 444455566666666666665554432111 01122222221 111 123444555556666666666655544
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.61 E-value=6.1 Score=32.83 Aligned_cols=84 Identities=6% Similarity=-0.011 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHH
Q 005729 587 LKPSNLALNSLINAFGEDQRD---AEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKA 663 (680)
Q Consensus 587 ~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 663 (680)
-.|+..+--.+.+++.+..+. .+++.+++.....+-.-.......|.-++.+.|++++|.++.+.+++ +.|+..-
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~Q 112 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 112 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 357777777788899887754 56888888888743222344555677889999999999999999998 6998877
Q ss_pred HHHHHHHHH
Q 005729 664 RAMLRSALR 672 (680)
Q Consensus 664 ~~~l~~a~~ 672 (680)
...|...++
T Consensus 113 A~~Lk~~Ie 121 (144)
T 1y8m_A 113 VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776665
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.43 E-value=2.3 Score=34.93 Aligned_cols=85 Identities=7% Similarity=0.015 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHH
Q 005729 586 GLKPSNLALNSLINAFGEDQRD---AEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRK 662 (680)
Q Consensus 586 g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 662 (680)
+-.|+..+--.+.+++.+..+. .+++.+++...+.+-.-....+..|.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4457777777788888887654 56888988888754111355677788899999999999999999998 689888
Q ss_pred HHHHHHHHHH
Q 005729 663 ARAMLRSALR 672 (680)
Q Consensus 663 ~~~~l~~a~~ 672 (680)
-...|...+.
T Consensus 113 QA~~Lk~~Ie 122 (134)
T 3o48_A 113 QVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.73 E-value=1.2 Score=36.34 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 368 PDEHTYSLLIDAYANAGRWES---ARIVLKEMEVSHAK-PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (680)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 434 (680)
++..+-..+..++++...... ++.+++.+...+.+ -.....-.+.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444455555444333 44555544433210 12223333444555555555555555555543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.73 E-value=4.5 Score=44.36 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCcHHHHHHHHH
Q 005729 598 INAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVPAVYEEMI 653 (680)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 653 (680)
..-|...|+++-|+++.++... +.| +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456678999999999999998 556 57899999999999999999999999884
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.52 E-value=7.5 Score=45.51 Aligned_cols=165 Identities=11% Similarity=0.098 Sum_probs=98.7
Q ss_pred HHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHH
Q 005729 170 IHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLL 249 (680)
Q Consensus 170 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~ 249 (680)
+..+.+.+..+-++.+..-.+.++..--.+..+|...|++++|.+.|++... |+..+......+
T Consensus 819 ~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~--------------- 882 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL--------------- 882 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH---------------
T ss_pred HHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh---------------
Confidence 3444455555556555334455666666677888888999999998877532 222221111000
Q ss_pred HHHHHHHHhC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 005729 250 QKLYKEIECD--KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVF 323 (680)
Q Consensus 250 ~~l~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~ 323 (680)
.. ...+... ....-..-|..++..+-+.|.++.++++-....+...+.+ ...|..+.+.+...|++++|...+
T Consensus 883 ~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 883 RE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00 1111111 1122345677788888888888888888776654321111 124777888888888988888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005729 324 EELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (680)
Q Consensus 324 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (680)
-.+..... -......|+..+|..|..+.
T Consensus 962 ~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 962 MVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 88776543 45566777777777666443
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.28 E-value=0.012 Score=59.65 Aligned_cols=210 Identities=15% Similarity=0.099 Sum_probs=105.4
Q ss_pred HHHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCC
Q 005729 165 LYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI 244 (680)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 244 (680)
+|+.|..+..+.+++.+|+.. -....|+..|..+|.+..+.|.+++-+..+...++.. -++..=+.++-+|++.++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIds-yIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDS-YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 132 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTS-SCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHccCchHHHHHH-HHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcH
Confidence 455555555555555555543 0111233355566666666666666666555544432 2233334555566666555
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHH
Q 005729 245 DSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG--------------------LSPKTATYA 304 (680)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------------------~~p~~~~~~ 304 (680)
.+ |.+-=-.||..-...+.+-|...|.++.|.-+|..+.... -..++.||-
T Consensus 133 ~e---------lEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 133 AE---------LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp ST---------TTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HH---------HHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 32 0000001222223333333334444443333332221100 023566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005729 305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG 384 (680)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 384 (680)
.+-.+|...+.+.-|.-+--.++-. +| -...++..|-..|.+++-+.+++.-.... ......++-|.-.|++-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence 8888888888777665544443321 11 12235666777788888777777765321 33566777777777654
Q ss_pred CHHHHHHHH
Q 005729 385 RWESARIVL 393 (680)
Q Consensus 385 ~~~~A~~~~ 393 (680)
+.++..+.+
T Consensus 277 ~PeKlmEHl 285 (624)
T 3lvg_A 277 KPQKMREHL 285 (624)
T ss_dssp CTTHHHHHH
T ss_pred CHHHHHHHH
Confidence 444444433
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.18 E-value=3.1 Score=34.95 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=44.6
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005729 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (680)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 552 (680)
..++.++|.++|+.++...-.- ...|.....--.+.|++..|.+++.+.+..+.+|. ..+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 3478888999998886553222 56666666666788999999999999998776643 3344333
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.56 E-value=3.3 Score=34.80 Aligned_cols=102 Identities=9% Similarity=0.044 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHHHHCC
Q 005729 299 KTATYAAVITALSNSGRT------IEAEAVFEELKESGLKPRTK----AYNALLK---GYVKMGYLKDAEFVVSEMERSG 365 (680)
Q Consensus 299 ~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~~~g 365 (680)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.+-- .+...+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555555 5556666665543 344311 1111100 1122356666777776665432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005729 366 VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK 402 (680)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 402 (680)
-.. ...|......-.++|++..|.+++......+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 555655555566666777777766666665543
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.86 E-value=45 Score=37.47 Aligned_cols=270 Identities=8% Similarity=-0.029 Sum_probs=130.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 005729 275 FAKAGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL-------KPRTKAYNALLKGY 345 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------~p~~~~~~~li~~~ 345 (680)
....|+.++++.++......+ -.+.+..-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445566666666665544311 011222333444555666666667776666554311 01112222232333
Q ss_pred HHcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhc
Q 005729 346 VKMGY-LKDAEFVVSEMERSGVLPDEHT--YS--LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL--AGYRDR 418 (680)
Q Consensus 346 ~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~ 418 (680)
+-.|. -+++.+.+..+.... +... .. .|...++-.|+-+....++..+.+.. +..+...+. -++...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33332 245555555555431 2211 12 22233445566666666766655431 223333333 334466
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005729 419 GEWQRTFQVLKEMKSSGVEPDTHFY--NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE 496 (680)
Q Consensus 419 g~~~~A~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 496 (680)
|+.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 77777777777776532 2222211 123445677788777777887777642 1222222233334444666666777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005729 497 LFEEMQERGYFPCTTTYNIMINLLGEQERW-EDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (680)
Q Consensus 497 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (680)
+++.+.+.+ .|.+.--..+.-+....|.. .++..++..+.. .+|..+-..-+.++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 776666554 33333333333333333332 566777777764 345444433333333
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.42 E-value=35 Score=34.88 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--H
Q 005729 477 TWNTLIDCHFKCGRYDRAEELFEEMQER--GYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRA----QGLLPN--V 545 (680)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~ 545 (680)
....|...|...|++.+|.+++.++... |.... ...+...++.|...+++.+|..++.++.. ....|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456777788888888888888887532 21111 34566677788888888888888887642 112222 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHh
Q 005729 546 VTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
..+...+..+...+++.+|.+.|.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 355666777778888888877664
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.39 E-value=3.7 Score=41.45 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYT 549 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 549 (680)
...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456677777888888888888877665 66777888888888888888888888877643 37888766543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.28 E-value=14 Score=43.27 Aligned_cols=149 Identities=9% Similarity=0.017 Sum_probs=86.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----C----------------
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----G---------------- 470 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~---------------- 470 (680)
++..+...+..+.+.++...+ +.+....-.+..+|...|++++|...|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344455555555554433321 233333344555666677777777776543210 0
Q ss_pred --CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 471 --IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN 544 (680)
Q Consensus 471 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 544 (680)
...-..-|..++..+-+.|.++.+.++-+..++..-.-+. ..|..+.+.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 0111234566777777778888777777666544212121 2467777888888888888888877766433 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHH
Q 005729 545 VVTYTTLVDIYGQSGRFDDAIE 566 (680)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~ 566 (680)
...+..|+...|..|..+.-..
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhC
Confidence 5667777777777776665443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.10 E-value=8.9 Score=29.59 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 606 RDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 606 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
+.=+..+-++.+....+.|++.+..+.+++|.|.+++.-|.++++-+..+ +.....+|..+++-++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElkPt 92 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPT 92 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHhhH
Confidence 34455566666666677888888888888888888888888888877655 344455677766666533
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.66 E-value=3.2 Score=45.54 Aligned_cols=52 Identities=21% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 587 LKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (680)
Q Consensus 587 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 640 (680)
.+-+..=|..|+....+.+.+++|.+.|+.... ..-++..+..|+..|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 344556688898888889999999999998887 3567888889999988766
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.19 E-value=9.4 Score=32.69 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 517 INLLGEQERWEDVKRLLGNMRAQ-GLLPN-------VVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 517 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
++.+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++.+|...|+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~ 87 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT 87 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 44555666666666666554432 11222 2355667777777777777777765
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.44 E-value=14 Score=30.19 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 005729 607 DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRYM 674 (680)
Q Consensus 607 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 674 (680)
.=+..+-++.+....+.|++.+....+++|.|.+++.-|.++++-+..+ +.+...+|..+++-++-.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkPt 135 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPT 135 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhhH
Confidence 3344555555556677888888888888888888888888888877655 445555677776666543
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.46 E-value=5.1e-05 Score=76.41 Aligned_cols=212 Identities=11% Similarity=0.107 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (680)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 344 (680)
..+|..|..++...+.+.+|++-|-+. .|...|..+|....+.|.+++-...+...++..- +...=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 345666666666666666665544222 2445566777777777777777777665554422 33344567777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------------------CCCC
Q 005729 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH--------------------AKPN 404 (680)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------------~~~~ 404 (680)
|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 887777655433221 2444444556666667777776666655432110 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005729 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC 484 (680)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 484 (680)
..||..+-.+|...+++.-|.-.--.+.-+. .....++..|-..|.+++.+.+++.-.... ......|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 4455555555555555544433322222110 011123444555555555555555544221 2344455555555
Q ss_pred HHHcCChhHHHHHH
Q 005729 485 HFKCGRYDRAEELF 498 (680)
Q Consensus 485 ~~~~g~~~~A~~~~ 498 (680)
|++- ++++..+.+
T Consensus 273 YsKY-~PeKlmEHl 285 (624)
T 3lvg_A 273 YSKF-KPQKMREHL 285 (624)
T ss_dssp HHSS-CTTHHHHHH
T ss_pred HHhc-CHHHHHHHH
Confidence 5443 344444433
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.37 E-value=21 Score=29.22 Aligned_cols=76 Identities=11% Similarity=-0.043 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 540 GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 540 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
+-.|+..+--.+..++.+..+.++. .+++.++..+.+.+..-....+--|.-++.+.|++++|.++.+.+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~--------~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDE--------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHH--------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHH--------HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3456777777777888887766432 23444555555443111234566677889999999999999999998
Q ss_pred CCCCCC
Q 005729 620 NGLKPD 625 (680)
Q Consensus 620 ~g~~p~ 625 (680)
+.|+
T Consensus 107 --~eP~ 110 (134)
T 3o48_A 107 --HERN 110 (134)
T ss_dssp --TCTT
T ss_pred --hCCC
Confidence 6776
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.47 E-value=66 Score=32.78 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCC
Q 005729 512 TYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPN---VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG 586 (680)
Q Consensus 512 t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g 586 (680)
....|...+...|++.+|..++..+... |.... ...+...++.|...+++.+|..+++.... ......
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~-------~~~~~~ 211 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK-------KTFKNP 211 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHHHSS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hhcccC
Confidence 3456788899999999999999998753 32221 34677778899999999999877653221 112222
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 587 LKPSN--LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (680)
Q Consensus 587 ~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (680)
..|+. ..|...+..+...+++.+|.+.|.++.+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22332 3567788888889999999998888764
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.29 E-value=55 Score=31.73 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHH
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVL----KEMKSSGVEPDTHFYNVMID 448 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~----~~m~~~~~~p~~~~~~~li~ 448 (680)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++- +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444555667777777777654432 2234445544433333 33444556666666666666
Q ss_pred HHHccCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005729 449 TFGKYNCLH-HAMAAFDRML----SEG--IEPDTITWNTLIDCHFKCGRYDRAEELF 498 (680)
Q Consensus 449 ~~~~~g~~~-~A~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 498 (680)
.+.....-+ .-.++.+.+. +.| ..-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 665544311 1112222222 111 2346666777777788888877777766
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.50 E-value=13 Score=28.78 Aligned_cols=47 Identities=6% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+..+-++.+...++.|++....+.+++|.+.+++.-|.++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555555666666666666666666666666666555543
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.19 E-value=29 Score=26.62 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=64.8
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (680)
.....++|..+-+|+...+. ...+--+-+..+...|++.+|..+ ...+-||...|-+|-. .|.|..+++...+.
T Consensus 18 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34467899999999998872 445555667788899999999998 6677899999988765 68899999999998
Q ss_pred HHHHcC
Q 005729 218 KMRQDG 223 (680)
Q Consensus 218 ~m~~~g 223 (680)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 888776
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.10 E-value=29 Score=26.63 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005729 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (680)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (680)
.....++|..+-+|+...+. ...+--+-+..+...|++.+|..+ ...+-||...|-+|-. .|.|..+++...+.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34467899999999998872 444555667788899999999998 6677899999988865 57788888888888
Q ss_pred HHHHcC
Q 005729 218 KMRQDG 223 (680)
Q Consensus 218 ~m~~~g 223 (680)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 888776
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.02 E-value=39 Score=28.02 Aligned_cols=74 Identities=9% Similarity=-0.064 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005729 542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (680)
Q Consensus 542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (680)
.|+..+--.+..++.+..+.++. .+++.++..+...+..-.....--|.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di--------~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~-- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDE--------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE-- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHH--------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--
T ss_pred CCcHHHHHHHHHHHHcCCCHHHH--------HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 56777777788888888766543 23444555555433222233455677789999999999999999999
Q ss_pred CCCC
Q 005729 622 LKPD 625 (680)
Q Consensus 622 ~~p~ 625 (680)
+.|+
T Consensus 106 ~eP~ 109 (144)
T 1y8m_A 106 HERN 109 (144)
T ss_dssp TCCC
T ss_pred cCCC
Confidence 6785
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.35 E-value=40 Score=29.87 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSAL 671 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~ 671 (680)
.|-.++..+ ..+...++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-....+...+-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 444444443 24457788888888887665543 4567777788888888888888888888888888666555444444
Q ss_pred H
Q 005729 672 R 672 (680)
Q Consensus 672 ~ 672 (680)
+
T Consensus 161 ~ 161 (202)
T 3esl_A 161 D 161 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 259
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.74 E-value=1.4e+02 Score=32.17 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Q 005729 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK--- 487 (680)
Q Consensus 411 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 487 (680)
....+.-.|+++.|.+++-.. ...+.+.+...+..|+- +.. -+.+......-....+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gL---L~~----~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKL---FKI----DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCC---ccC----CCcccccCCCcccccHHHHHHHHHHHhh
Confidence 455566678888888877643 23444444444443332 222 1111111000112336677777764
Q ss_pred cCChhHHHHHHHHH
Q 005729 488 CGRYDRAEELFEEM 501 (680)
Q Consensus 488 ~g~~~~A~~~~~~m 501 (680)
..+..+|.++|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56778888877766
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.08 E-value=24 Score=28.91 Aligned_cols=47 Identities=6% Similarity=0.124 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
+..+-++.+...++.|++......+++|.+.+++..|.++++-+..+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555555566666666666666666666666666666666544
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.76 E-value=44 Score=33.91 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005729 304 AAVITALSNSGRTIEAEAVFEELKE 328 (680)
Q Consensus 304 ~~li~~~~~~g~~~~A~~l~~~m~~ 328 (680)
..+...|.+.|++++|.++|.++..
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~ 159 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLS 159 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.59 E-value=16 Score=34.11 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005729 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (680)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 539 (680)
...+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4556788888888887777765 667777778888888888888888888777764
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.62 E-value=93 Score=30.51 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--cCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDK--FHKVPAVYEEMILSGCTPDRKARAMLRSA 670 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 670 (680)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+-.......-+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4688899999999999999999988631111 23445556666665432 35678888889988887777666555555
Q ss_pred HHHH
Q 005729 671 LRYM 674 (680)
Q Consensus 671 ~~~~ 674 (680)
+..+
T Consensus 298 l~~l 301 (358)
T 3eiq_C 298 YNEI 301 (358)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4433
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.57 E-value=49 Score=28.24 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=36.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVG-LSPK-------TATYAAVITALSNSGRTIEAEAVFEELKE 328 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g-~~p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (680)
+..+...|.++.|.-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444566777777777666544211 1233 13566777888888888888888888643
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=62.10 E-value=1.2e+02 Score=29.41 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=52.8
Q ss_pred HHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCChhhHHHHHHHHHhc
Q 005729 166 YSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLM----SKMRQDGYHCDFINYSLVIQSLTRT 241 (680)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~ 241 (680)
+.++..-|.+++++++|+.+ ...-...+.+.|+...|-++- +-..+.++++|......++..+...
T Consensus 38 ~RTi~~Ry~~~k~y~eAidL----------L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDI----------LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhcCHHHHHHH----------HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34445556666666666654 111223344555555444443 3333445566665555555555444
Q ss_pred CCCChHHHHHHHHHHHh----CC--CCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005729 242 NKIDSSLLQKLYKEIEC----DK--IELDGQLLNDVIVGFAKAGDASKAMRFL 288 (680)
Q Consensus 242 g~~~~~~~~~l~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 288 (680)
...+... ..+.+.++. .| ..-|......+...|.+.+++.+|..-|
T Consensus 108 ~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 108 QPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4322211 122222211 11 2334555555566666666666665554
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.76 E-value=56 Score=33.13 Aligned_cols=59 Identities=10% Similarity=-0.033 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005729 338 YNALLKGYVKMGYLKDAEFVVSEMERS--GVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (680)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (680)
...+...|.+.|++++|.+.+.++... +...-...+-.+++.+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555555555555555555555432 11112334444444444444544444444443
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.36 E-value=1.1e+02 Score=29.94 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (680)
...+|.-|...|+.++|...++.+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 45678888899999999999988753
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.29 E-value=3e+02 Score=31.02 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---C-------hhhHHHHHHH---HHh-cCCCC---hHHHHHHHHHH
Q 005729 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHC---D-------FINYSLVIQS---LTR-TNKID---SSLLQKLYKEI 256 (680)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~-------~~~~~~ll~~---~~~-~g~~~---~~~~~~l~~~~ 256 (680)
.....|+.-|.+.|.+.+|+.+.-+..+..+-+ + ..+|..++.- |+. .-..+ ..+.+-+++-.
T Consensus 146 ~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 146 SIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence 356677788888888888888766543321100 1 1233333321 221 11111 11222222222
Q ss_pred HhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005729 257 ECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 257 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (680)
.+.+ ..-|..++.++.+.++.+.+.++|..+..
T Consensus 226 ~k~~----~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 226 MNMP----NCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHSS----SCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HhCC----chhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2211 12356677778888999999999988764
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.80 E-value=80 Score=24.31 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
+...|++++|..+.+.+- .||...|-+|-. .+.|..+++...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555554443332 455555544432 24555555555555554444
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.39 E-value=1.2e+02 Score=26.90 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005729 454 NCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (680)
+...++..+|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666665544332 3345555555556666666666666666555444
No 271
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=50.69 E-value=5.8 Score=20.67 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=9.5
Q ss_pred cCCCCCCCCCCCccc
Q 005729 3 LLPPQPLSVRFPAIH 17 (680)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (680)
.-||.|+|.+|--|.
T Consensus 8 vqppapppnafvei~ 22 (26)
T 2lkw_A 8 VQPPAPPPNAFVEIX 22 (26)
T ss_pred ccCCCcCCCeeEEEE
Confidence 446777777775554
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.08 E-value=1e+02 Score=25.00 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER--WEDVKRLLGNMRAQGLLPNVV 546 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 546 (680)
.+.++.-|...|+.++|...++++..... -.......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45667777778888888888877742211 123334444445554432 355667777776666554433
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.86 E-value=1.1e+02 Score=25.55 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHH
Q 005729 608 AEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAM 666 (680)
Q Consensus 608 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 666 (680)
+++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-....+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 141 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQ 141 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 347888888988776553 45777888888899999999999999999888886554433
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.56 E-value=1.8e+02 Score=27.78 Aligned_cols=168 Identities=10% Similarity=0.024 Sum_probs=98.1
Q ss_pred HHHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCChhhHHHHHHHHHh
Q 005729 165 LYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNL----MSKMRQDGYHCDFINYSLVIQSLTR 240 (680)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 240 (680)
.|.++..-|.+++++++|+.+ ...-...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidl----------L~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIEL----------ISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHH----------HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456677778888999998875 12223345666776666664 3444455777887777777766665
Q ss_pred cCCCChHHHHHHHHHHH----hCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 005729 241 TNKIDSSLLQKLYKEIE----CDK--IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNS- 313 (680)
Q Consensus 241 ~g~~~~~~~~~l~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~- 313 (680)
....+... ..+...+. +.| ..-|...+..+...|.+.|++.+|..-|-.- -.-|...+..++.-+...
T Consensus 105 ~p~~~~~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 105 LDPSEPNL-KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp CCTTCTTH-HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCchH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhc
Confidence 44332211 23333333 232 2357888999999999999999998866411 111344444444333333
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 314 --GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (680)
Q Consensus 314 --g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 362 (680)
|...++ +... ...+-.|.-.|++..|..+++...
T Consensus 180 ~~~~~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333222 1111 222334556788888888887664
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.45 E-value=78 Score=24.33 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005729 450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (680)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (680)
+...|++++|..+.+.+- .||...|-+|-. .+.|..+++...+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555554443322 455555544432 24555555555555555444
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.47 E-value=2.1e+02 Score=27.29 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--cCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDK--FHKVPAVYEEMILSGCTPDRKARAMLRSA 670 (680)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 670 (680)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+-+......-+.+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4567888899999999999999988521111 22344455555555432 35577888888888877766665544444
Q ss_pred HH
Q 005729 671 LR 672 (680)
Q Consensus 671 ~~ 672 (680)
+.
T Consensus 247 l~ 248 (307)
T 2zu6_B 247 YN 248 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 277
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.04 E-value=1.6e+02 Score=25.89 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=37.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCH
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-----TIEAEAVFEELKESGLKPRT 335 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~ 335 (680)
+-.+++.|+-++.+|++.| .|....-..++-+.-.-|. ...|...++.....|.+--.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 88 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEAR 88 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3478888888888888888 7766666666666655554 23345555555555654333
No 278
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=44.70 E-value=12 Score=19.49 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=5.4
Q ss_pred CccCCCCCCC
Q 005729 1 MILLPPQPLS 10 (680)
Q Consensus 1 ~~~~~~~~~~ 10 (680)
|+-.||||+-
T Consensus 9 mfsvppppi~ 18 (26)
T 2bn5_B 9 MFSVPPPPIL 18 (26)
T ss_dssp CCSCCCCSCC
T ss_pred eecCCCCCcc
Confidence 4455666654
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.64 E-value=35 Score=30.80 Aligned_cols=86 Identities=9% Similarity=-0.022 Sum_probs=41.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHH--HHHHHHH
Q 005729 199 LISACARNDDLEKALNLMSKMRQDGYHCDFIN--YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL--LNDVIVG 274 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~--~~~li~~ 274 (680)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|.. .+.+.+.+.|..++... ....+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~------~~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP------SVVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH------HHHHHHHHcCCCccccCCCCCCHHHH
Confidence 34455677887777777776666655444321 11233344445543 34444555554433211 1122333
Q ss_pred HHHcCCHHHHHHHHHH
Q 005729 275 FAKAGDASKAMRFLGM 290 (680)
Q Consensus 275 ~~~~g~~~~A~~~~~~ 290 (680)
.+..|+.+-...+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 4455555444444433
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.25 E-value=24 Score=32.91 Aligned_cols=9 Identities=0% Similarity=-0.145 Sum_probs=3.9
Q ss_pred HHcCChhHH
Q 005729 486 FKCGRYDRA 494 (680)
Q Consensus 486 ~~~g~~~~A 494 (680)
++.|+.+-+
T Consensus 227 ~~~~~~~~v 235 (285)
T 1wdy_A 227 VEKKHLGLV 235 (285)
T ss_dssp HHTTCHHHH
T ss_pred HHcCCHHHH
Confidence 344554433
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.98 E-value=39 Score=31.34 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 005729 198 ALISACARNDDLEKALNL 215 (680)
Q Consensus 198 ~li~~~~~~g~~~~A~~~ 215 (680)
+.+...++.|+.+....+
T Consensus 7 ~~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHH
Confidence 344455666665444333
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.86 E-value=85 Score=26.35 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER--WEDVKRLLGNMRAQGLLPNV 545 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 545 (680)
.+.++.-|...|+.++|...++++.... .........+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4556677777777777777777764221 1113333444444444322 34566666666666554433
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.73 E-value=63 Score=27.16 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 575 AVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (680)
..++|..|..+|+--... .|......+-..|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 445677888887765554 788888889999999999999999999888884
No 284
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=41.46 E-value=11 Score=20.09 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 005729 4 LPPQPLSVR 12 (680)
Q Consensus 4 ~~~~~~~~~ 12 (680)
.|||++|+|
T Consensus 5 ~P~P~LPpR 13 (26)
T 1wa7_B 5 MPTPPLPPR 13 (26)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 356666665
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.40 E-value=97 Score=35.22 Aligned_cols=110 Identities=10% Similarity=0.041 Sum_probs=63.5
Q ss_pred HHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH
Q 005729 169 LIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL 248 (680)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~ 248 (680)
++..+...|..+-|+.+..-.+.|+..--.+..+|...|++++|.+.|+++. .|+..+.......- .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~------------~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLR------------E 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGH------------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchh------------h
Confidence 4555666777777777755556677666677888888999999999998764 23332221110000 0
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005729 249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (680)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (680)
...++.... .......-|..++..+-+.+.++-++++-+..++
T Consensus 883 ~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 883 FQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 001111000 0111233667777777777777777777776664
No 286
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.60 E-value=2e+02 Score=25.48 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCC
Q 005729 267 LLNDVIVGFAK---AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-----TIEAEAVFEELKESGLKPR 334 (680)
Q Consensus 267 ~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~ 334 (680)
.+-.+|+++.| -.+++.|+-++.+|++.|..|....-..++-+.-.-|. ...|...++.....|.+--
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 34445555544 47899999999999998887777776666666655554 2345555666666665433
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.39 E-value=73 Score=27.15 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=24.1
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005729 578 AFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624 (680)
Q Consensus 578 ~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 624 (680)
+|..|...|+--... .|......+-..|++.+|.++|+.-++.+-.|
T Consensus 82 if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 82 MYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344555554433332 44555555555555555555555555555555
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.21 E-value=1.8e+02 Score=24.73 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005729 608 AEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSA 670 (680)
Q Consensus 608 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 670 (680)
+++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-....+....-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F 140 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQF 140 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 347788999998877654 457778888899999999999999999999999987765544433
No 289
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.44 E-value=3.4e+02 Score=27.51 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005729 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNL 215 (680)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (680)
....+.|.+ .+.+.|+ |.-+.+|..-.+.|...|++.+|.++ ..+..+++.|.+..-..=...|+..--+..
T Consensus 342 l~n~~lA~~---lA~R~~L-pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALR---MAVRNNL-AGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHH---HHHHTTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHH---HHHhcCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 356666654 4455664 55556788788899999999999887 445567777777655555555666667777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 005729 216 MSKMRQDGYHCDFINYSLVIQSLTRTNK 243 (680)
Q Consensus 216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 243 (680)
|..+.+.| +.+..--.-+.+.....|+
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r 444 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGR 444 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccH
Confidence 77777665 3444333333333333443
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.00 E-value=1.7e+02 Score=28.00 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCH
Q 005729 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC--LHHAMAAFDRMLSEGIEPDT 475 (680)
Q Consensus 408 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~ 475 (680)
...++.-|...|+.++|.+.++++..... -...++..+..++-+.++ .+...+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 45677888888999999988888852211 123444555555555433 46677788888766654433
No 291
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.69 E-value=2.1e+02 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=27.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005729 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (680)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 314 (680)
+-.+++.|+-++.+|++.|..|....-..++-+.-.-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44788888888888888887777666665555554444
No 292
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.41 E-value=3e+02 Score=26.29 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCC
Q 005729 606 RDAEAFAVLQYMKENGLKPDV--VTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPD 660 (680)
Q Consensus 606 ~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 660 (680)
+.....++-..+-.-.+.|.. -+...-+....+.+++.-|..+.+++++.+..++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 344455555555554455533 3455566677788888888888888887655433
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.12 E-value=4.4e+02 Score=28.02 Aligned_cols=272 Identities=9% Similarity=0.015 Sum_probs=146.7
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHhcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005729 148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD 227 (680)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 227 (680)
++...+.++...|....+-+.-+..+++.+++..-+......+.+...-.....+....|+..+|....+.+-..| ...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~ 135 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQ 135 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCC
Confidence 4445555554334444455666777888888887777633356677777777888889999888888888877665 345
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-----------HHc-CCHHHHHHHHHHHHhCC
Q 005729 228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGF-----------AKA-GDASKAMRFLGMAQGVG 295 (680)
Q Consensus 228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~-----------~~~-g~~~~A~~~~~~~~~~g 295 (680)
+..+..++..+.+.|.+.......-++.+...|- ...-..|+... ... .++..+......
T Consensus 136 p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~----- 207 (618)
T 1qsa_A 136 PNACDKLFSVWRASGKQDPLAYLERIRLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART----- 207 (618)
T ss_dssp CTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----
T ss_pred cHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----
Confidence 6677888888888888766433333333333321 11111111110 000 011111111110
Q ss_pred CCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCC
Q 005729 296 LSPKTA---TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV----KMGYLKDAEFVVSEMERSGVLP 368 (680)
Q Consensus 296 ~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~ 368 (680)
..++.. .+...+.-+.+ .+.+.|..++....+.. ..+......+-..++ ..+...++...+....... .
T Consensus 208 ~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~ 283 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C
Confidence 012211 11112223333 36678888887776543 223333322222222 3342445666666654432 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005729 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (680)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 433 (680)
+.....-.+....+.|+++.|...|+.|..... ....-.--+.+++...|+.++|..+|..+.+
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333344444445567888888888887754321 1233334455677778888888888888764
No 294
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.56 E-value=3.4e+02 Score=26.57 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005729 195 TYNALISACARNDDLEKALNLMSKMR 220 (680)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (680)
.-..+|.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45667788888888888888888875
No 295
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=33.96 E-value=2.6e+02 Score=25.05 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005729 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL 367 (680)
Q Consensus 317 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 367 (680)
+.+..++..+.+.|...|...-...+....+.+.+ ....+-.++.+.|+.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 34456667777777654444444455544442111 244555666677765
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.02 E-value=29 Score=31.30 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=6.2
Q ss_pred HHHcCCHHHHHHH
Q 005729 203 CARNDDLEKALNL 215 (680)
Q Consensus 203 ~~~~g~~~~A~~~ 215 (680)
.++.|+.+....+
T Consensus 16 A~~~g~~~~~~~L 28 (240)
T 3eu9_A 16 ATQYGIYERCREL 28 (240)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCChHHHHHH
Confidence 4555665444333
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.76 E-value=2.2e+02 Score=23.80 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR--TIEAEAVFEELKESGLK 332 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 332 (680)
.+.++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46678888889999999999998852111 123344455555555332 44567777777766654
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.58 E-value=2.8e+02 Score=25.10 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 005729 198 ALISACARNDDLEKALNLMSKMRQ 221 (680)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~ 221 (680)
--+..+....++++|+++.++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356778888899999988887654
No 299
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.15 E-value=4e+02 Score=26.38 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 005729 375 LLIDAYANAGRWESARIVLKEMEVSHAKPN-----SFIYSRILAGYRDRGEWQRTFQVLKEMKSS--GVEPDTHFYNVM- 446 (680)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~l- 446 (680)
-|+..|...|++.+|.+++.++.+.--..| ..++..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456666666777776666666654211111 123444556666677777777666665432 122333222111
Q ss_pred ---HHHHH-ccCCHHHHHHHHHHHH
Q 005729 447 ---IDTFG-KYNCLHHAMAAFDRML 467 (680)
Q Consensus 447 ---i~~~~-~~g~~~~A~~~~~~m~ 467 (680)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12234 5667777766665543
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.01 E-value=2.4e+02 Score=25.40 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005729 608 AEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVPAVYEEMILSGCTPDRKARAMLRSALRY 673 (680)
Q Consensus 608 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 673 (680)
+++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-....+....-.+.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 467788888888776554 456778888888999999999999999988888866655544444433
No 301
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=28.54 E-value=3.9e+02 Score=25.44 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCH-----HHHHHHHHHHHHcCCHHHH
Q 005729 210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG-----QLLNDVIVGFAKAGDASKA 284 (680)
Q Consensus 210 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A 284 (680)
..|..+.+.|+..| .|..+ ++..++...........+.|..+....+.-+. ..|..++.+++..-...+|
T Consensus 16 ~DA~~L~~A~kG~G--tde~~---lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA 90 (315)
T 1dm5_A 16 EDAETLRKAMKGIG--TDEKS---ITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLA 90 (315)
T ss_dssp HHHHHHHHHHSSSS--CCHHH---HHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCHHH---HHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHH
Confidence 45666666665444 45443 44444544333223334455554433222111 1345555555554344556
Q ss_pred HHHHHHHHhCC
Q 005729 285 MRFLGMAQGVG 295 (680)
Q Consensus 285 ~~~~~~~~~~g 295 (680)
..+.+.|...|
T Consensus 91 ~~L~~A~kg~G 101 (315)
T 1dm5_A 91 EQLHAAMKGLG 101 (315)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHhhcCC
Confidence 66666665544
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.47 E-value=1e+02 Score=27.78 Aligned_cols=51 Identities=20% Similarity=0.097 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005729 575 AVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (680)
Q Consensus 575 a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (680)
...+|..|...|+--... .|......+-..|++++|..+|+.-++.+-.|-
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345677888887765554 788888889999999999999999998877884
No 303
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.11 E-value=4.2e+02 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcCcHHHHHHHHHHcC
Q 005729 611 FAVLQYMKENGLKPDV--VTYTTLMKALIRVDKFHKVPAVYEEMILSG 656 (680)
Q Consensus 611 ~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 656 (680)
+++-..+-.-.+.|.. -+...-|....+.+++.-|..+-+++++.+
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3333334433444433 244556666778888888888888888764
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.95 E-value=3.2e+02 Score=23.98 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHCC
Q 005729 454 NCLHHAMAAFDRMLSEG 470 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~ 470 (680)
.+.+.|+-.+.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.27 E-value=2.6e+02 Score=23.11 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 360 EMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 360 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
.+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445565533 2333445555555556666777777766655556655555555555554
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.22 E-value=2.6e+02 Score=22.52 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 005729 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR--TIEAEAVFEELKESGLKP 333 (680)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 333 (680)
.+.++.-|...|+.++|.+.++++..... ........+..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 46678888889999999999988852111 123344455555555432 356677777777666543
No 307
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.08 E-value=1.2e+02 Score=26.29 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 005729 199 LISACARNDDLEKALNLMSKMRQDGYHCDF 228 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 228 (680)
.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 344445555555555566666666655544
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.99 E-value=45 Score=29.94 Aligned_cols=13 Identities=8% Similarity=-0.151 Sum_probs=6.3
Q ss_pred HHHHHHHcCCHHH
Q 005729 271 VIVGFAKAGDASK 283 (680)
Q Consensus 271 li~~~~~~g~~~~ 283 (680)
.+...++.|+.+-
T Consensus 45 ~L~~A~~~~~~~~ 57 (240)
T 3eu9_A 45 LLHWAAINNRIDL 57 (240)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHHHhCCHHH
Confidence 3444455555543
No 309
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.87 E-value=4e+02 Score=24.72 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005729 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (680)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (680)
..+.|+++++++....-++.. +-|...-..|+..+|-.|+|+.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445666677766666666554 336666666677777777777777666666544
No 310
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.25 E-value=5.1e+02 Score=25.63 Aligned_cols=131 Identities=12% Similarity=0.077 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 005729 336 KAYNALLKGYVKMGYLKDAEFVVSEMERS-GVLPD---EHTYSLLIDAYANA-GRWESARIVLKEMEVSHAKPNSFIY-- 408 (680)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~-- 408 (680)
.....|...|.+.|+.++..+++...... +.-+- ......+++.+... +..+.-.++..+..+.... ...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45566777888888888877777766431 11111 23344566666553 2333333333333321100 00112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005729 409 ----SRILAGYRDRGEWQRTFQVLKEMKSSGVEPD-----THFYNVMIDTFGKYNCLHHAMAAFDRML 467 (680)
Q Consensus 409 ----~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (680)
..++..|...|++.+|.+++.++.+.--..| ..+|..-+..|...+++.++...+....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2456666777777777666666654210111 2233444555666666666666665554
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.32 E-value=85 Score=29.40 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=6.8
Q ss_pred HHHcCCHHHHHHHH
Q 005729 203 CARNDDLEKALNLM 216 (680)
Q Consensus 203 ~~~~g~~~~A~~~~ 216 (680)
.+..|+.+-+..++
T Consensus 38 A~~~g~~~~v~~Ll 51 (285)
T 3kea_A 38 AIADNNVRLVCTLL 51 (285)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 44556655444333
No 312
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.62 E-value=2.9e+02 Score=23.97 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHHH
Q 005729 660 DRKARAMLRSALRYMK 675 (680)
Q Consensus 660 d~~~~~~l~~a~~~~k 675 (680)
+..++..|.+.|+.++
T Consensus 105 d~Ell~eL~~~Ck~~q 120 (186)
T 1oxz_A 105 SEDLMKELYQRCERMR 120 (186)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 313
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.34 E-value=7.1e+02 Score=26.65 Aligned_cols=81 Identities=9% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 005729 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA 278 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (680)
...++.-.|+++.|++.+-+. ...+.+-+...+. ..|-+.. -+.+.......-..-+..||..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~---~~gLL~~------~~~lls~~~~~~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLA---SLKLFKI------DSSTRLTKKPKRDIRFANILANYTKS 366 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHH---HTTC-----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHH---HcCCccC------CCcccccCCCcccccHHHHHHHHHHH
Confidence 445566788999998877654 2345554444443 2332211 01111100000122366778778754
Q ss_pred ---CCHHHHHHHHHHHH
Q 005729 279 ---GDASKAMRFLGMAQ 292 (680)
Q Consensus 279 ---g~~~~A~~~~~~~~ 292 (680)
.++.+|+++|-.+.
T Consensus 367 F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTTCHHHHHHHHHGGG
T ss_pred hhcCCHHHHHHHHHHHh
Confidence 88899999887763
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.10 E-value=3.6e+02 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHcCC
Q 005729 369 DEHTYSLLIDAYANAGR 385 (680)
Q Consensus 369 ~~~~~~~li~~~~~~g~ 385 (680)
+..+-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444445544444
No 315
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.03 E-value=2.7e+02 Score=26.43 Aligned_cols=287 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH---HHHHHHHhcCCCChHHHHHHHHHHHhCCCCcC--HHHHHHH
Q 005729 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYS---LVIQSLTRTNKIDSSLLQKLYKEIECDKIELD--GQLLNDV 271 (680)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l 271 (680)
++.+...++.|+.+-+..+++. |..++...-. +-|...+..|.. .+.+.+.+.|..++ .......
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~------~iv~~Ll~~ga~~~~~~~~~~~~ 95 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSRE------DIVELLLRHGADPVLRKKNGATP 95 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCH------HHHHHHHHTTCCTTCCCTTCCCH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCH------HHHHHHHHcCCchhhhccCCCch
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------
Q 005729 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYN------------ 339 (680)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~------------ 339 (680)
+......+.......+........ ..|..-++.+..+..... .++.+.+.+.|..++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~ 169 (337)
T 4g8k_A 96 FILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGA 169 (337)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSC
T ss_pred hHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCC
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHh
Q 005729 340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYS--RILAGYRD 417 (680)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~ 417 (680)
+.+...+..|+.+-+..++++....--..+..-.+.+...... +.......+.+.+.+.|..++..... +.+...+.
T Consensus 170 T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~ 248 (337)
T 4g8k_A 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 248 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005729 418 RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEEL 497 (680)
Q Consensus 418 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 497 (680)
.|..+.+..++..-...--..|..-.+.|..+..... .++.+.+++.|..++..+ .+..-++.|+.+ +
T Consensus 249 ~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----i 316 (337)
T 4g8k_A 249 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----L 316 (337)
T ss_dssp TTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----H
T ss_pred hhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----H
Q ss_pred HHHHHHCCCCCCHHH
Q 005729 498 FEEMQERGYFPCTTT 512 (680)
Q Consensus 498 ~~~m~~~~~~p~~~t 512 (680)
.+-+++.|-.||...
T Consensus 317 v~~Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 317 VKVLLSHGAKEDFHP 331 (337)
T ss_dssp HHHHHHTTCCC----
T ss_pred HHHHHHCcCCCCCCC
No 316
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.55 E-value=6e+02 Score=25.55 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCcCHH
Q 005729 191 LTPLTYNALISACARNDDLEKALNLMSKMRQDGY----HCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ 266 (680)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~ 266 (680)
.+......++.. ..|+..+++.+++.+..... .....+...+-..+.+... ....+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~----------------~~dk~gd 253 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSA----------------RFDNKGD 253 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCC----------------C---CCH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhh----------------ccCCccc
Confidence 455566655554 57899999998888765421 0112332222222111100 0011122
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005729 267 LLNDVIVGF---AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (680)
Q Consensus 267 ~~~~li~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 314 (680)
.+-.++.++ .+.++.+.|+.++.+|.+.|..|....-..++.+.-.-|
T Consensus 254 ~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 254 RFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 222334444 345789999999999999887776655555555444433
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.48 E-value=3.3e+02 Score=23.84 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHCC
Q 005729 455 CLHHAMAAFDRMLSEG 470 (680)
Q Consensus 455 ~~~~A~~~~~~m~~~~ 470 (680)
+.+.|+-.+.+|++.|
T Consensus 22 DpDAAly~LaRMl~~G 37 (201)
T 3bge_A 22 APDAALYWYARILTAG 37 (201)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3344444444444433
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.37 E-value=40 Score=31.00 Aligned_cols=31 Identities=6% Similarity=-0.069 Sum_probs=21.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 005729 199 LISACARNDDLEKALNLMSKMRQDGYHCDFI 229 (680)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 229 (680)
.+...++.|+.+....+++.+.+.|..++..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~ 38 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE 38 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchh
Confidence 3445677888888888888777766655533
No 319
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.81 E-value=4.7e+02 Score=24.07 Aligned_cols=60 Identities=10% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 005729 373 YSLLIDAYANAGRWESARIVLKEMEVSH--AKPNSFIYSRILAGYRD-RGEWQRTFQVLKEMK 432 (680)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~-~g~~~~A~~l~~~m~ 432 (680)
...++...-+.++++++...++++.+.+ ...+..-.|.+-.+|-. .|....+++++..+.
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3345556666777777777777777766 56666666666666532 234444555555543
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.63 E-value=4.5e+02 Score=23.74 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=53.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005729 482 IDCHFKCGRYDRAEELFEEMQER--GYFP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555 (680)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 555 (680)
++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45566677777777777665432 1121 1111222223223323333344444444 22 34566666777778
Q ss_pred HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005729 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNS 596 (680)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 596 (680)
.+.|+-++|.+.|=..... .+-..+++.+..-|...|..
T Consensus 102 ~rLg~~~~A~~lfL~~rs~--~i~~~~r~l~~~gd~~~Yi~ 140 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRSN--FIQDLILQIGSVDNPTNYLT 140 (235)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHHHHHCC--CCSHHHHHH
T ss_pred HHCCChhHHHHHHHHHHHH--HHHHHHHHhcccCCHHHHHH
Confidence 8888888888776422222 22233444455555555543
No 321
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.21 E-value=4.3e+02 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 005729 454 NCLHHAMAAFDRMLSEGIEP 473 (680)
Q Consensus 454 g~~~~A~~~~~~m~~~~~~~ 473 (680)
.+.+.|+-.+.+|++.|..|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34444444444444444333
No 322
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.16 E-value=4e+02 Score=22.94 Aligned_cols=49 Identities=16% Similarity=0.012 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005729 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR 385 (680)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 385 (680)
++..+-...+..+.+.|..+ +...+..+.. .++...-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCC
Confidence 34444444555555555422 2222222222 1344444444555555544
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.98 E-value=4.3e+02 Score=27.25 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCH--HHH-HHHHHHHHHcCChhHHHHHHHHHHHC
Q 005729 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDT--ITW-NTLIDCHFKCGRYDRAEELFEEMQER 504 (680)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (680)
...+|.+++.|...+.++.|.++..+..--.. .++. ..| -.+...+.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788889999999999999999988752100 0111 122 22345566688899999888888765
No 324
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.94 E-value=1e+02 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=12.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC
Q 005729 273 VGFAKAGDASKAMRFLGMAQGVGLS 297 (680)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~ 297 (680)
...++.|+.+....+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3344556665555555554444433
No 325
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.64 E-value=1.6e+02 Score=20.53 Aligned_cols=45 Identities=20% Similarity=0.056 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005729 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (680)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 523 (680)
++.+++.++...-+++++..+.++.+.| ..+..+|..-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4555555655555666666666666666 45566666555555543
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.58 E-value=6.7e+02 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005729 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (680)
Q Consensus 516 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (680)
++..|...|..+-+.++... .+-+...--.+..+|...|++++|.++|+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~ 864 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFK 864 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666677777655543322 22243333456677788888888887775
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.36 E-value=2.7e+02 Score=22.84 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005729 361 MERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (680)
Q Consensus 361 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (680)
+.+.|++.+..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 445555544332 2334444444555556666666665555555555555555554444
No 328
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.07 E-value=4.1e+02 Score=22.69 Aligned_cols=125 Identities=7% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005729 286 RFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSG 365 (680)
Q Consensus 286 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 365 (680)
++-+.+.+.|+.++.+ ..++..+.+.|+.-|...-...+....+.|.+-. ..+-.++.+.|
T Consensus 37 EL~~KL~~kg~~~~~i------------------e~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~~I~~eL~~KG 97 (177)
T 3e3v_A 37 EVEDKLRSLDIHEDYI------------------SEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-KVIKLNLSKKG 97 (177)
T ss_dssp HHHTTSGGGTCCHHHH------------------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-HHHHHHHHHcC
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 005729 366 VLPDEHTYSLLIDAYANAGRWESARIVLKE-MEVSHAKPNSFIYSRILAGYRDRG-EWQRTFQVLKEM 431 (680)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m 431 (680)
+ +.......+..+......+.|..+.++ +......++......++..+.+.| .++.+..+++.+
T Consensus 98 I--~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 98 I--DDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp C--CHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Done!