BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005730
         (680 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FB7|A Chain A, Nmr Solution Structure Of Protein From Zebra Fish
          Dr.13312
 pdb|2VXF|A Chain A, Solution Structure Of The Lsm-Domain Of Zebrafish Rap55
          Length = 95

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
          ISL SK+EIRYEG+L+ I+TE S++ L   R     +      + P D+ +EYI+FRGSD
Sbjct: 22 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSD 81

Query: 85 IK 86
          IK
Sbjct: 82 IK 83


>pdb|2VXE|A Chain A, Solution Structure Of The Lsm Domain Of Drosophila
          Melanogaster Tral (Trailer Hitch)
          Length = 88

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
          ISL SK++IRYEG L+ ++ +E +I L + R     +     Q+ P  +IY+YILFRGSD
Sbjct: 16 ISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSD 75

Query: 85 IK 86
          IK
Sbjct: 76 IK 77


>pdb|2WE3|A Chain A, Ebv Dutpase Inactive Mutant Deleted Of Motif V
          Length = 264

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 134 SIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTS-QLGL-SRPPFQGNPPLYQPGG 191
           +  ND  ++Q    QA++   TL + T  L  P   T+  LGL +RPP          G 
Sbjct: 18  AFQNDKLLLQ----QASVGRLTLVNKTTILLRPMKTTTVDLGLYARPP---------EGH 64

Query: 192 SLGAWGSSPMPTTNGAGLAMPMY 214
            L  WGS+  P T+  G+  P Y
Sbjct: 65  GLMLWGSTSRPVTSHVGIIDPGY 87


>pdb|2BSY|A Chain A, Epstein Barr Virus Dutpase
 pdb|2BT1|A Chain A, Epstein Barr Virus Dutpase In Complex With A,B-Imino Dutp
          Length = 278

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 134 SIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTS-QLGL-SRPPFQGNPPLYQPGG 191
           +  ND  ++Q    QA++   TL + T  L  P   T+  LGL +RPP          G 
Sbjct: 10  AFQNDKLLLQ----QASVGRLTLVNKTTILLRPMKTTTVDLGLYARPP---------EGH 56

Query: 192 SLGAWGSSPMPTTNGAGLAMPMY 214
            L  WGS+  P T+  G+  P Y
Sbjct: 57  GLMLWGSTSRPVTSHVGIIDPGY 79


>pdb|2WE0|A Chain A, Ebv Dutpase Mutant Cys4ser
          Length = 286

 Score = 30.0 bits (66), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 17/94 (18%)

Query: 123 VKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTS-QLGL-SRPPF 180
           +++SP ++   +  ND  ++Q    QA++   TL + T  L  P   T+  LGL +RPP 
Sbjct: 9   MEASPHIRY--AFQNDKLLLQ----QASVGRLTLVNKTTILLRPMKTTTVDLGLYARPP- 61

Query: 181 QGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMY 214
                    G  L  WGS+  P T+  G+  P Y
Sbjct: 62  --------EGHGLMLWGSTSRPVTSHVGIIDPGY 87


>pdb|2WE1|A Chain A, Ebv Dutpase Mutant Asp131asn With Bound Dump
          Length = 286

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 134 SIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTS-QLGL-SRPPFQGNPPLYQPGG 191
           +  ND  ++Q    QA++   TL + T  L  P   T+  LGL +RPP          G 
Sbjct: 18  AFQNDKLLLQ----QASVGRLTLVNKTTILLRPMKTTTVDLGLYARPP---------EGH 64

Query: 192 SLGAWGSSPMPTTNGAGLAMPMY 214
            L  WGS+  P T+  G+  P Y
Sbjct: 65  GLMLWGSTSRPVTSHVGIIDPGY 87


>pdb|2WE2|A Chain A, Ebv Dutpase Double Mutant Gly78asp-Asp131ser With Dump
          Length = 286

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 134 SIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTS-QLGL-SRPPFQGNPPLYQPGG 191
           +  ND  ++Q    QA++   TL + T  L  P   T+  LGL +RPP          G 
Sbjct: 18  AFQNDKLLLQ----QASVGRLTLVNKTTILLRPMKTTTVDLGLYARPP---------EGH 64

Query: 192 SLGAWGSSPMPTTNGAGLAMPMY 214
            L  WGS+  P T+  G+  P Y
Sbjct: 65  GLMLWGSTSRPVTSHVGIIDPDY 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,455,652
Number of Sequences: 62578
Number of extensions: 727116
Number of successful extensions: 1580
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 16
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)