BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005730
(680 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1
Length = 611
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 288/609 (47%), Positives = 342/609 (56%), Gaps = 91/609 (14%)
Query: 1 MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQK 59
MAA T S SS +ADSY+GSLISLTSKSEIRYEG+L+NINT+ESSIGL+N R +
Sbjct: 1 MAADNT---GSKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTE 57
Query: 60 GEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQ 119
G +K GPQVPPSDK+YEYILFRG+DIK
Sbjct: 58 GRKKDGPQVPPSDKVYEYILFRGTDIK--------------------------------- 84
Query: 120 DLQVKSSPPVQ-TTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSR 177
DLQVK+SPPVQ ++I+NDPAIIQSHY S +LPS +GSLPD +S Q G
Sbjct: 85 DLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSHNGQPGQHG 144
Query: 178 PPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYG-SPNGL-QGQQQPLLQP 235
FQ PLYQPGG+LG+WG+SP P PMYWQGFY PNGL Q QQ L++P
Sbjct: 145 MGFQNAMPLYQPGGNLGSWGASPQP---------PMYWQGFYTPPPNGLPQLHQQSLIRP 195
Query: 236 PPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLP- 294
P GL M S+QQ +QYP N P S+ P + P ST + L LP
Sbjct: 196 PHGLPMPNSLQQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPSSLPF 255
Query: 295 ------------------AQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSG 336
A S ++ S+ + L+ +KA PT T+L L+
Sbjct: 256 PGLPPVTLSSSLQSTLQSAPSPSLASEMAPPLLSNKAPITAPPTLPQDTNL-----LSFS 310
Query: 337 IDKTAVAPVS-------EPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQ 389
+ T S +P V GPI P Q+T S G+SSSI D P LVTPGQ
Sbjct: 311 LSTTRATEASTGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVSSSISQDKPKPLLVTPGQ 370
Query: 390 LLQPGLPAVSSSQSSQAAQKDVEVVQLSSSES-AAAPPPASDVQEPILPLPSTTE--RKP 446
LLQ G AVS S S A KDVEVVQ+SSS + P S+ Q PILPLPS+ +KP
Sbjct: 371 LLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQKP 430
Query: 447 YGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKA 506
G GYR GRGRGRGRG S +FTEDFDF AMNEKFNKDEVWGHLGKS
Sbjct: 431 NGHSFPNHNGYR-GRGRGRGRGAGRSHQVMKFTEDFDFTAMNEKFNKDEVWGHLGKSTTL 489
Query: 507 LDDGDNYEDEEDVGSS---KHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDT 563
DGD +D V + K E KPVY KDDFFDSLS + ++R S N RPRFSEQ + DT
Sbjct: 490 --DGDEDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDT 547
Query: 564 EV-SRWARW 571
E ++R+
Sbjct: 548 ETFGEFSRF 556
>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2
SV=1
Length = 571
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 67/226 (29%)
Query: 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIY 75
D++IGS ISL SK EIRYEG+L+++N ++S++GL+N R +G +K GPQ+PP DK+Y
Sbjct: 30 GDTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVY 89
Query: 76 EYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSI 135
+YILFRGSDIK DLQV SP Q+ I
Sbjct: 90 DYILFRGSDIK---------------------------------DLQVNPSPSAQSRQEI 116
Query: 136 HNDPAIIQSHYSQAAIASTTLPSG------------------TGSLPDPTSQTSQLGLSR 177
++ + QS +S+ A+ ++ SG S P P +Q S + LS
Sbjct: 117 QSEQDVNQSPHSRPAMTMSSPISGYDSGYGLGRGSQWINTPALSSKPVPVTQHSSVPLSF 176
Query: 178 PPFQGNPPLYQPGGSLGAWGSSPM----PTTNGAGLAMPM--YWQG 217
P P + G+ SP+ T + AG +MP+ + QG
Sbjct: 177 QP---------PSANAGSLTESPVSLIDSTQSNAGSSMPIPSFVQG 213
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 474 SATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKD 533
S+ +TE+FDF AMNEKF K E+WG+LG++N+ N EE E KP Y KD
Sbjct: 423 SSIEYTEEFDFEAMNEKFKKSELWGYLGRNNQR---NQNDYGEETAIEPNAEGKPAYNKD 479
Query: 534 DFFDSLSCDALNRGSHNGRP--RFSEQVRRDTEV 565
DFFD++SC+ L+R + +G+ +F E +R+ E
Sbjct: 480 DFFDTISCNQLDRVARSGQQHNQFPEHMRQVPEA 513
>sp|Q9HGL3|SUM2_SCHPO Protein sum2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sum2 PE=2 SV=1
Length = 426
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 154/360 (42%), Gaps = 88/360 (24%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGP--QVPPSDKIYEY 77
+IGS ISL SKS+IRY G+L +IN+++S++ L++ R K P ++PPSD +++Y
Sbjct: 4 FIGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDY 63
Query: 78 ILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHN 137
I+FRGSD+K + + S+PPVQ N
Sbjct: 64 IVFRGSDVKDLRIE---------------------------EPATTPSAPPVQPP----N 92
Query: 138 DPAII-----QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 192
DPAII Q +++QA A P P Q G + P + P G
Sbjct: 93 DPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGG 152
Query: 193 LGAWGSSPMPT-TNGAGLAMPMYWQGFYGSPNGLQGQQQPLL----------QPP----P 237
L P+ T + + A+P +YG+P+ Q Q+P Q P P
Sbjct: 153 L------PLGTPLDASTPAVP-----YYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNVRP 201
Query: 238 GLSMLPSMQQSMQY-PAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPA- 295
G M PS Q+ + P M PT VS P+ Q MPP + G + P + A
Sbjct: 202 GYGM-PSNQKPPNFAPGMPAPGPTAVSASPSLQ-------SMPP-TNGVIPGAQPSIEAS 252
Query: 296 --------QSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSE 347
++S + +D N D + +QT+ T+ PS +P P D +A P +E
Sbjct: 253 IEKESTSIRNSTVTNDRVVNTTVDVSQSQTVETSGPSKEVPTTQP-----DASAAKPRTE 307
>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3
Length = 463
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEV 565
E P+ Y K FFD++SCD + RP ++E+ R + E
Sbjct: 351 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAET 395
>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1
Length = 463
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEV 565
E P+ Y K FFD++SCD + RP ++E+ R + E
Sbjct: 351 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAET 395
>sp|Q8K2F8|LS14A_MOUSE Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1
Length = 462
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 40.0 bits (92), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 290 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 349
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEV 565
E P+ Y K FFD++SCD + RP ++E+ R + E
Sbjct: 350 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAET 394
>sp|A0A8M2|L14AA_XENLA Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-a PE=1 SV=1
Length = 471
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+I+EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGD----NYEDEED--------VGSSKH 524
+F +DFDF + N +FNK+E+ K DD N ED+ D G+++
Sbjct: 295 KFEKDFDFESANAQFNKEEIDREFHNKLKIKDDKPEKPVNGEDKTDSVVDTQNSEGNAEE 354
Query: 525 ENKPV-----YVK-DDFFDSLSCD 542
E Y K FFD++SCD
Sbjct: 355 EEVLAGGVCYYDKTKSFFDNISCD 378
>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1
Length = 471
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGD----NYEDEEDVGSSKHENKPVYVK 532
+F +DFDF + N +FNK+++ K DD N ED+ D G ++ +
Sbjct: 294 KFEKDFDFESANAQFNKEDIDREFHNKLKLKDDKPEKPLNGEDKTDSGVDTQNSEGHAEE 353
Query: 533 DD--------------FFDSLSCDALNRGSHNGRPRFSEQVRRDTEV 565
+D FFDS+SCD + + R ++E+ R + E
Sbjct: 354 EDVLAAGVCYYDKTKSFFDSISCD----DNRDRRQTWAEERRMNAET 396
>sp|Q3MHF8|LS14A_BOVIN Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1
Length = 463
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 40.0 bits (92), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEV 565
E P+ Y K FFD++SCD + RP ++E+ R + E
Sbjct: 351 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAET 395
>sp|Q6NVR8|LS14A_XENTR Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1
Length = 469
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGD----NYEDEEDVGSSKHENKPVYVK 532
+F +DFDF + N +FNK+E+ K DD N ED+ D G ++ +
Sbjct: 294 KFEKDFDFESANAQFNKEEIDREFHNKLKLKDDKPEKPVNGEDKTDSGVDTQNSEGNAEE 353
Query: 533 DD--------------FFDSLSCDALNRGSHNGRPRFSEQVRRDTEV 565
DD FFD++SCD + + R +SE+ R + E
Sbjct: 354 DDVLAGGVCYYDKTKSFFDNISCD----DNRDRRQTWSEERRINAET 396
>sp|Q68FI1|L14BA_XENLA Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-a PE=1 SV=1
Length = 422
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIY 75
S YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++Y
Sbjct: 3 SGTPYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVY 62
Query: 76 EYILFRGSDIKHCLL 90
EYI+FRGSDIK +
Sbjct: 63 EYIIFRGSDIKDITV 77
>sp|Q9YH12|LSM14_PLEWA Protein LSM14 homolog OS=Pleurodeles waltl GN=lsm14 PE=1 SV=1
Length = 467
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L L + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDLTV 77
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 28/90 (31%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDD--------------GD----------N 512
+F +DFDF + N +F K+E+ K DD GD N
Sbjct: 295 KFEKDFDFESANAQFTKEEIDREFHNKLKLKDDKPEKVEKPVNGEDKGDSGIDTQNSEGN 354
Query: 513 YEDEEDVGSSKHENKPVYVKDDFFDSLSCD 542
++EE + S+ + +K FFD++SCD
Sbjct: 355 ADEEEALASNCYYDK----TKSFFDNISCD 380
>sp|Q566L7|LS14B_XENTR Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1
Length = 382
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDITV 77
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEV 496
RG+ R + +A +F DFDF N +FN++E+
Sbjct: 231 RGQNRPTTVKENAIKFEGDFDFETANAQFNREEL 264
>sp|Q498K9|L14BB_XENLA Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-b PE=1 SV=1
Length = 380
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLL 90
FRGSDIK +
Sbjct: 67 FRGSDIKDITV 77
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDE--EDVG 520
RG+ R + +A +F DFDF + N +FN++E+ +K D N++D+ E G
Sbjct: 229 RGQNRPTTVKENAIKFEGDFDFESANAQFNREEL-------DKEFKDKLNFKDDKPEKAG 281
Query: 521 SSKHE 525
K +
Sbjct: 282 EEKTD 286
>sp|Q8CGC4|LS14B_MOUSE Protein LSM14 homolog B OS=Mus musculus GN=Lsm14b PE=2 SV=3
Length = 385
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 13 SSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSD 72
S S Y+GS ISL SK++IRYEG+L+ I+T+ S++ L R + PP +
Sbjct: 2 SGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPRE 61
Query: 73 KIYEYILFRGSDIKHCLL 90
+IYEYI+FRGSDIK +
Sbjct: 62 EIYEYIIFRGSDIKDITV 79
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEED 518
RG+ R + + +F DFDF + N +FN++E+ K DD + +E+D
Sbjct: 234 RGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKADKGEEKD 289
>sp|Q9BX40|LS14B_HUMAN Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1
Length = 385
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 13 SSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSD 72
S S Y+GS ISL SK++IRYEG+L+ I+T+ S++ L R + PP +
Sbjct: 2 SGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPRE 61
Query: 73 KIYEYILFRGSDIKHCLL 90
+IYEYI+FRGSDIK +
Sbjct: 62 EIYEYIIFRGSDIKDITV 79
Score = 37.4 bits (85), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDV 519
RG+ R + + +F DFDF + N +FN++E+ K DD +E+D+
Sbjct: 234 RGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDL 290
>sp|P45978|SCD6_YEAST Protein SCD6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCD6 PE=1 SV=1
Length = 349
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP-QVPPSDKIYEY 77
YIG ISL S ++ RY G+L +I++E+ ++ L+ R +G + GP ++ P+ +Y
Sbjct: 4 YIGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTVYNS 63
Query: 78 ILFRGSDIKHCLL 90
+ F GS++K +
Sbjct: 64 VKFNGSEVKDLSI 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,847,581
Number of Sequences: 539616
Number of extensions: 12357316
Number of successful extensions: 36571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1107
Number of HSP's that attempted gapping in prelim test: 33252
Number of HSP's gapped (non-prelim): 3664
length of query: 680
length of database: 191,569,459
effective HSP length: 124
effective length of query: 556
effective length of database: 124,657,075
effective search space: 69309333700
effective search space used: 69309333700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)