Query 005730
Match_columns 680
No_of_seqs 187 out of 234
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 12:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1073 Uncharacterized mRNA-a 100.0 2.8E-38 6.1E-43 331.3 26.0 145 16-202 3-149 (361)
2 PF12701 LSM14: Scd6-like Sm d 100.0 3.3E-34 7.1E-39 254.1 7.8 93 16-145 2-95 (96)
3 cd01736 LSm14_N LSm14 (also kn 100.0 4.7E-33 1E-37 236.5 7.5 70 17-86 1-71 (74)
4 PF09532 FDF: FDF domain; Int 99.9 2.4E-24 5.1E-29 189.7 -1.9 94 476-569 1-103 (104)
5 cd00600 Sm_like The eukaryotic 97.5 0.00023 5E-09 57.3 5.3 58 18-86 2-60 (63)
6 PF14438 SM-ATX: Ataxin 2 SM d 97.4 7.6E-05 1.6E-09 63.4 2.2 66 18-86 8-76 (77)
7 PF01423 LSM: LSM domain ; In 95.3 0.033 7.1E-07 45.7 4.8 59 18-86 4-63 (67)
8 cd01737 LSm16_N LSm16 belongs 94.3 0.11 2.4E-06 44.2 5.6 56 18-86 2-59 (62)
9 smart00651 Sm snRNP Sm protein 94.2 0.083 1.8E-06 43.2 4.6 59 18-86 4-63 (67)
10 cd01728 LSm1 The eukaryotic Sm 93.9 0.14 3E-06 44.4 5.7 62 17-86 7-69 (74)
11 cd01731 archaeal_Sm1 The archa 93.6 0.15 3.2E-06 42.7 5.1 58 18-86 6-64 (68)
12 cd01722 Sm_F The eukaryotic Sm 93.4 0.16 3.6E-06 42.7 5.2 58 18-86 7-65 (68)
13 cd01719 Sm_G The eukaryotic Sm 93.3 0.18 3.9E-06 43.2 5.3 59 17-86 5-64 (72)
14 cd01726 LSm6 The eukaryotic Sm 93.1 0.19 4.1E-06 42.2 5.1 58 18-86 6-64 (67)
15 PRK00737 small nuclear ribonuc 93.1 0.17 3.7E-06 43.1 4.9 58 18-86 10-68 (72)
16 cd01717 Sm_B The eukaryotic Sm 91.9 0.42 9.1E-06 41.3 5.9 69 17-86 5-74 (79)
17 COG1958 LSM1 Small nuclear rib 90.9 0.6 1.3E-05 40.2 5.8 61 18-86 13-75 (79)
18 cd01725 LSm2 The eukaryotic Sm 90.1 0.78 1.7E-05 40.1 5.8 59 19-86 8-67 (81)
19 cd01723 LSm4 The eukaryotic Sm 90.0 0.65 1.4E-05 40.0 5.1 58 19-86 8-66 (76)
20 cd01727 LSm8 The eukaryotic Sm 89.1 0.75 1.6E-05 39.4 4.9 62 16-86 3-67 (74)
21 cd01721 Sm_D3 The eukaryotic S 87.9 1.2 2.6E-05 37.9 5.3 58 18-86 6-64 (70)
22 KOG1924 RhoA GTPase effector D 87.7 2.2 4.7E-05 51.2 8.9 7 534-540 977-983 (1102)
23 cd01724 Sm_D1 The eukaryotic S 87.7 1.2 2.5E-05 40.0 5.3 57 19-86 8-65 (90)
24 cd01729 LSm7 The eukaryotic Sm 85.3 2.3 5E-05 37.3 5.9 67 17-86 7-74 (81)
25 KOG1924 RhoA GTPase effector D 85.0 4.8 0.00011 48.4 9.8 8 255-262 607-614 (1102)
26 cd01733 LSm10 The eukaryotic S 83.5 2.5 5.5E-05 36.9 5.3 58 18-86 15-73 (78)
27 cd06168 LSm9 The eukaryotic Sm 82.4 3.7 7.9E-05 35.8 5.8 64 18-86 6-70 (75)
28 KOG1775 U6 snRNA-associated Sm 76.3 1.3 2.8E-05 39.5 1.2 59 18-86 13-74 (84)
29 cd01732 LSm5 The eukaryotic Sm 75.1 7.9 0.00017 33.8 5.7 60 19-86 10-70 (76)
30 cd01720 Sm_D2 The eukaryotic S 67.3 16 0.00034 32.9 5.9 65 21-86 13-81 (87)
31 cd01730 LSm3 The eukaryotic Sm 66.3 19 0.00042 31.4 6.2 67 19-86 8-78 (82)
32 PF06372 Gemin6: Gemin6 protei 61.6 11 0.00025 37.6 4.3 35 18-53 13-47 (166)
33 PF14661 HAUS6_N: HAUS augmin- 45.8 13 0.00027 38.5 1.9 47 619-673 2-65 (247)
34 KOG4849 mRNA cleavage factor I 39.8 1.9E+02 0.0042 32.8 9.7 26 14-46 70-95 (498)
35 KOG2236 Uncharacterized conser 35.7 89 0.0019 36.1 6.6 11 115-125 337-347 (483)
36 KOG0132 RNA polymerase II C-te 35.5 3.4E+02 0.0075 33.6 11.4 14 212-225 623-638 (894)
37 KOG4849 mRNA cleavage factor I 34.4 2.4E+02 0.0052 32.0 9.4 25 226-252 262-286 (498)
38 PF12287 Caprin-1_C: Cytoplasm 31.3 29 0.00063 38.0 1.9 10 386-395 122-131 (316)
39 KOG0132 RNA polymerase II C-te 30.2 5.6E+02 0.012 31.9 12.0 9 68-76 454-462 (894)
40 KOG2140 Uncharacterized conser 29.7 42 0.0009 39.6 2.9 22 477-498 386-409 (739)
41 PF02237 BPL_C: Biotin protein 28.2 91 0.002 24.7 3.8 27 20-47 1-27 (48)
42 KOG1073 Uncharacterized mRNA-a 26.2 99 0.0022 34.7 4.9 38 528-569 253-291 (361)
43 PRK14631 hypothetical protein; 26.1 92 0.002 31.3 4.3 37 16-52 111-151 (174)
44 PF05918 API5: Apoptosis inhib 25.8 23 0.00049 41.4 0.0 24 577-600 530-554 (556)
45 KOG1645 RING-finger-containing 25.5 20 0.00042 40.7 -0.6 13 644-656 235-247 (463)
46 cd01718 Sm_E The eukaryotic Sm 24.7 1.7E+02 0.0036 26.2 5.1 58 19-86 13-75 (79)
47 PTZ00138 small nuclear ribonuc 24.6 1.4E+02 0.003 27.3 4.7 52 25-86 31-83 (89)
48 PRK14638 hypothetical protein; 24.2 1E+02 0.0022 30.2 4.0 35 16-52 94-128 (150)
49 KOG1783 Small nuclear ribonucl 24.1 42 0.00091 30.1 1.3 59 17-86 11-70 (77)
50 PRK14644 hypothetical protein; 24.0 1.1E+02 0.0025 29.5 4.3 35 16-52 79-117 (136)
51 KOG0260 RNA polymerase II, lar 24.0 1.5E+03 0.033 29.9 14.4 7 78-84 1329-1335(1605)
52 PF11208 DUF2992: Protein of u 22.8 18 0.00039 35.0 -1.3 43 33-86 8-50 (132)
53 PRK15319 AIDA autotransporter- 21.2 1.7E+02 0.0038 39.1 6.2 24 73-116 1646-1669(2039)
54 cd01735 LSm12_N LSm12 belongs 21.2 1.8E+02 0.0038 25.1 4.4 33 20-52 4-36 (61)
55 TIGR01628 PABP-1234 polyadenyl 21.0 4.5E+02 0.0098 29.9 8.9 23 75-97 221-244 (562)
No 1
>KOG1073 consensus Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-38 Score=331.26 Aligned_cols=145 Identities=43% Similarity=0.644 Sum_probs=115.9
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccccccccccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITG 94 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK~~~~~~~~ 94 (680)
.+++||||+||||||.|||||||||+||++||||+|+||| ||||||+++++++|+.++|||||||||||||
T Consensus 3 ~~t~yIGS~ISLISk~DIRYEGILy~in~qdSTlgLqnVRsfGTEgRk~~~pq~p~~~kVy~YIlFRGSDIK-------- 74 (361)
T KOG1073|consen 3 LVTSYIGSFISLISKNDIRYEGILYTINLQDSTLGLQNVRSFGTEGRKTDGPQVPPDDKVYDYILFRGSDIK-------- 74 (361)
T ss_pred cccccccceeEEeecccceeeeEEEeccccccceehhheeecccccCCCCCCcCCCCccceeeEEecCcccc--------
Confidence 5799999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCCcccccccchhhccccCCCCceeecCCCCCCCCCCCCChhhhhccCCCccccccCCCC-CCCCCCCCCCCCCCC
Q 005730 95 DAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQL 173 (680)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~v~~~~~~~~~~~~~~dpai~~~~~~~~~~~s~slps-~~g~~p~~ss~~~~~ 173 (680)
||+|+++|..+..-..+.+|+|.. ..++++ .+++.+..+.+..+.
T Consensus 75 -------------------------DL~V~~~p~~~~~~~~p~~pp~p~---------~~~~~s~~s~~~~~~s~~~~~~ 120 (361)
T KOG1073|consen 75 -------------------------DLIVQETPAGQIPCSLPVPPPMPP---------QSSIPSQQSGSDPKISFQFAQA 120 (361)
T ss_pred -------------------------eeeeccCcccCccccccCCCCCCc---------ccccccccCCcccccccccccC
Confidence 999999876655566777777721 112222 344455555555544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005730 174 GLSRPPFQGNPPLYQPGGSLGAWGSSPMP 202 (680)
Q Consensus 174 g~p~p~fq~~~P~yqPg~~~gswG~sp~p 202 (680)
+-+.-.++.+++.++|....|+|.....+
T Consensus 121 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ 149 (361)
T KOG1073|consen 121 GNPVIGNPQGLITTNPVPAEGSIYGSFQP 149 (361)
T ss_pred CCcccCCcCccccCCCCccccccccccCC
Confidence 44444455667788888888998887733
No 2
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=100.00 E-value=3.3e-34 Score=254.06 Aligned_cols=93 Identities=54% Similarity=0.916 Sum_probs=71.7
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccccccccccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITG 94 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK~~~~~~~~ 94 (680)
++++|||++||||||++|||||+|++||++++||+|+||| ||||||+.+. +|||++++|+||+|||+|||
T Consensus 2 m~~~~IGs~ISlisk~~iRYeG~L~~Id~~~sTItL~nVr~~GtE~R~~~~-~ipp~~~v~~~I~Fr~sDIk-------- 72 (96)
T PF12701_consen 2 MADPYIGSKISLISKSDIRYEGILYSIDTEDSTITLKNVRSFGTEGRPTDR-EIPPSDEVYDYIVFRGSDIK-------- 72 (96)
T ss_dssp -CCCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEETTETTSS-SS----C-CSSSSEEEEETTTEE--------
T ss_pred ccccccCCEEEEEECCCcEEEEEEEEEcCCCCEEEeeeeeecCcCCCCcCc-ccCCCCceeeEEEEEccccc--------
Confidence 5689999999999999999999999999999999999999 9999999875 89999999999999999999
Q ss_pred cCCCCCCcccccccchhhccccCCCCceeecCCCCCCCCCCCCChhhhhcc
Q 005730 95 DAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSH 145 (680)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~v~~~~~~~~~~~~~~dpai~~~~ 145 (680)
||+|++.++. ...++||||++++
T Consensus 73 -------------------------dL~v~e~~~~---~~~~~dpAiv~~~ 95 (96)
T PF12701_consen 73 -------------------------DLKVIEPPPP---PPAPQDPAIVSVS 95 (96)
T ss_dssp -------------------------EEEECE-S-S---SSS----------
T ss_pred -------------------------eEEEEcCCCC---CCCCCCCceeecC
Confidence 9999998764 5679999999864
No 3
>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles.
Probab=99.98 E-value=4.7e-33 Score=236.55 Aligned_cols=70 Identities=60% Similarity=1.058 Sum_probs=68.0
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
+.+|||++||||||+||||||+||+||++++||+|+||| ||||||+.++++|||+++|||||+|||+|||
T Consensus 1 ~~~~IG~~isLISk~~iRYeGiL~~In~~~sTi~L~nVr~fGTEgR~~~~~~ipp~~~vyd~IvFrgsDIk 71 (74)
T cd01736 1 VTPYIGSKISLISKSDIRYEGILYTINTEDSTIALKNVRSFGTEGRPTDGPEIPPSDEVYDYIVFRGSDIK 71 (74)
T ss_pred CccccCceEEEEecCCcEEEEEEEeeccccCEEEeeeeEeecccCCCCCCCccCCCCcceeEEEEcCCccc
Confidence 468999999999999999999999999999999999999 9999999887789999999999999999999
No 4
>PF09532 FDF: FDF domain; InterPro: IPR019050 This motif is found in the C-terminal region of Sm-like proteins []. Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks.; PDB: 4A53_A 2WAX_B 3D3K_A 2WAY_B 3D3J_A.
Probab=99.88 E-value=2.4e-24 Score=189.67 Aligned_cols=94 Identities=34% Similarity=0.591 Sum_probs=42.9
Q ss_pred ccCCccccHHHHhhhcchhhhhhhcccCCCcCCCCCC----CccccccCCCCCCCCccccC-CCCCcccccccccCCCCC
Q 005730 476 TRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDN----YEDEEDVGSSKHENKPVYVK-DDFFDSLSCDALNRGSHN 550 (680)
Q Consensus 476 ~kFteDFDFea~NeKFnKdEv~g~Lgkk~k~~~Dedd----~~~e~~~~~~~~e~k~~YdK-dsFFDsISCda~dr~g~n 550 (680)
++|++||||++||+||+|+++|++++++.+....... ..++.........+..+|+| ++|||+|||++.+|....
T Consensus 1 ik~~~DFDFes~NakF~K~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~k~~sfFDnIS~e~~~~~~~~ 80 (104)
T PF09532_consen 1 IKFDEDFDFESANAKFDKEEVFKELKKKDEKDEEDRLVSENKEEEEAEEENENDEEKYYDKKKSFFDNISCEAKDRSEGN 80 (104)
T ss_dssp SSSSS---HCCCCCTSSCCHHCCHHHCC--------------------------------B--B-------EEE-TT--E
T ss_pred CCCcCccCHHHHHHHhccccchhhhhcccccccccccccccccccccccccccCcccccccccccCcCCCcccccccCCc
Confidence 5899999999999999999999999877553321100 11111222233344566666 899999999999996544
Q ss_pred C-CC---CchhhhcccccccccC
Q 005730 551 G-RP---RFSEQVRRDTEVSRWA 569 (680)
Q Consensus 551 g-R~---r~sEeRklntETFG~~ 569 (680)
+ |. +|+|||++|+||||+.
T Consensus 81 ~~~~~~~~~~eer~~n~ETFG~~ 103 (104)
T PF09532_consen 81 GPRRSGDDWREERKLNTETFGQS 103 (104)
T ss_dssp EE---HHHHHHHHHHH-HHTT--
T ss_pred CCCcchhhHHHHHHhcccccCCC
Confidence 3 33 3999999999999985
No 5
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=97.46 E-value=0.00023 Score=57.26 Aligned_cols=58 Identities=19% Similarity=0.402 Sum_probs=49.8
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+..+.+..|+|+|..+|. ...|.|+|+. +.+++ ....++.++.||+.|+
T Consensus 2 ~~~~g~~V~V~l~~g~~~~G~L~~~D~-~~Ni~L~~~~~~~~~~----------~~~~~~~~~irG~~I~ 60 (63)
T cd00600 2 KDLVGKTVRVELKDGRVLEGVLVAFDK-YMNLVLDDVEETIKEG----------KKRVLGLVLIRGDNVR 60 (63)
T ss_pred hHHCCCEEEEEECCCcEEEEEEEEECC-CCCEEECCEEEEecCC----------cEEECCeEEEECCEEE
Confidence 468999999999999999999999994 5599999999 88762 2345578999999998
No 6
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=97.42 E-value=7.6e-05 Score=63.36 Aligned_cols=66 Identities=23% Similarity=0.430 Sum_probs=42.9
Q ss_pred cccccceeEEEecCCceeEEEeeeecCC--CCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTE--ESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e--~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..+||.++.+..|.+-+|||||+..+++ +..|.|+.+| -.++.... .-+-..++-+.++|+++||-
T Consensus 8 ~~lvG~~V~V~~~~G~~yeGif~s~s~~~~~~~vvLk~a~~~~~~~~~~---~~~~~~~~~~tlii~~~dvv 76 (77)
T PF14438_consen 8 TNLVGQTVEVTTKNGSVYEGIFHSASPESNEFDVVLKMARKVPKSDQSN---SDPLSSEIVETLIIPAKDVV 76 (77)
T ss_dssp HTTTTSEEEEEETTS-EEEEEEEEE-T---T--EEEEEEEETTS---------EEEEEEE-GGGEEE-----
T ss_pred HhCcCCEEEEEECCCCEEEEEEEeCCCcccceeEEEEeeeecccccccc---CCccCCCCCceEEEeccccC
Confidence 4579999999999999999999999998 8999999999 66554432 23456677788999999984
No 7
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=95.26 E-value=0.033 Score=45.67 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=48.6
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+..+.+..|+|+|..+|. .--|.|+||. .-.+++ ...-+..++.||+.|.
T Consensus 4 ~~~~g~~V~V~l~~g~~~~G~L~~~D~-~~Nl~L~~~~~~~~~~~---------~~~~~~~~~irG~~I~ 63 (67)
T PF01423_consen 4 QKLIGKRVRVELKNGRTYRGTLVSFDQ-FMNLVLSDVTETIKNGP---------EKRSLGLVFIRGSNIR 63 (67)
T ss_dssp HHTTTSEEEEEETTSEEEEEEEEEEET-TEEEEEEEEEEEETTES---------EEEEEEEEEEEGGGEE
T ss_pred HHhCCcEEEEEEeCCEEEEEEEEEeec-hheEEeeeEEEEECCCC---------cEeECcEEEEECCEEE
Confidence 468999999999999999999999995 6779999998 654443 3344577888999997
No 8
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. LSm16 has, in addition to its N-terminal Sm-like domain, a C-terminal Yjef_N-type rossman fold domain of unknown function.
Probab=94.28 E-value=0.11 Score=44.16 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=44.9
Q ss_pred cccccceeEEEecCCce-eEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIR-YEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIR-YeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
+.+||+-+||-...++- |.|.+..||.++.||.|.+-- -|- |+. +=| ++||.-|||
T Consensus 2 ~dWiGs~VSI~C~~~lGVyQG~i~~V~~~~qTI~l~~~~~ngi--k~~----------~~E-Vt~~~~DI~ 59 (62)
T cd01737 2 QDWLGSIVSINCGETLGVYQGLVSAVDQESQTISLAFPFHNGV--KCL----------VPE-VTFRAGDIR 59 (62)
T ss_pred CcccceEEEEecCCceEEEEEEEEEeCccceEEEEeecccCCc--ccc----------Cce-EEEEEcchh
Confidence 57999999999998875 999999999999999998722 222 222 223 899999999
No 9
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=94.15 E-value=0.083 Score=43.22 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=47.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+..+.+..|+|+|..+|. .-.|.|+|+. ...+. .....++-++.||+.|.
T Consensus 4 ~~~~~~~V~V~l~~g~~~~G~L~~~D~-~~NlvL~~~~e~~~~~---------~~~~~~~~~~IrG~~I~ 63 (67)
T smart00651 4 KKLIGKRVLVELKNGREYRGTLKGFDQ-FMNLVLEDVEETVKDG---------EKKRKLGLVFIRGNNIV 63 (67)
T ss_pred HHhCCcEEEEEECCCcEEEEEEEEECc-cccEEEccEEEEecCC---------cEEeEeCCEEEcCCEEE
Confidence 468999999999999999999999995 6789999987 55432 12233456888999887
No 10
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=93.92 E-value=0.14 Score=44.36 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=48.7
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-..||+++|.++-+.+-.|.|+|..+| +.-.|.|.|+. +-.++-+. .+.....+++||+.|-
T Consensus 7 L~~~l~k~v~V~l~~gr~~~G~L~~fD-~~~NlvL~d~~E~~~~~~~~-------~~~~lG~~viRG~~V~ 69 (74)
T cd01728 7 LVDDLDKKVVVLLRDGRKLIGILRSFD-QFANLVLQDTVERIYVGDKY-------GDIPRGIFIIRGENVV 69 (74)
T ss_pred HHHhcCCEEEEEEcCCeEEEEEEEEEC-CcccEEecceEEEEecCCcc-------ceeEeeEEEEECCEEE
Confidence 357899999999999999999999999 56789999997 55443110 1234678999999886
No 11
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=93.56 E-value=0.15 Score=42.75 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=46.4
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+..|.+-.|+|+|..+|. .--|.|+|+. +-.+++ ..-+..++.||+.|.
T Consensus 6 ~~~~~~~V~V~l~~g~~~~G~L~~~D~-~mNlvL~~~~e~~~~~~----------~~~lg~~~iRG~~I~ 64 (68)
T cd01731 6 KDSLNKPVLVKLKGGKEVRGRLKSYDQ-HMNLVLEDAEEIDDGEP----------VRKYGRVVIRGDNVL 64 (68)
T ss_pred HHhcCCEEEEEECCCCEEEEEEEEECC-cceEEEeeEEEEecCCe----------EeEcCcEEEeCCEEE
Confidence 468999999999999999999999997 5678899987 443321 223567899999987
No 12
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=93.45 E-value=0.16 Score=42.70 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=46.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+..|+|+|..+| +.--|.|+|+. +-- + . ....++.++-||+.|+
T Consensus 7 ~~~~g~~V~V~Lk~g~~~~G~L~~~D-~~mNi~L~~~~e~~~-~-----~----~~~~lg~~~IRG~~I~ 65 (68)
T cd01722 7 NDLTGKPVIVKLKWGMEYKGTLVSVD-SYMNLQLANTEEYID-G-----K----STGNLGEVLIRCNNVL 65 (68)
T ss_pred HHcCCCEEEEEECCCcEEEEEEEEEC-CCEEEEEeeEEEEeC-C-----c----cccCcCcEEEECCEEE
Confidence 45799999999999999999999999 57789999986 421 1 1 1233577899999987
No 13
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=93.28 E-value=0.18 Score=43.23 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=47.9
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
...||+++|.++-|.+..|+|+|..+| +---|.|+||. +-- + . ....+.-++-||+.|.
T Consensus 5 L~~~i~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~E~~~-~-----~----~~~~lg~v~IRG~~I~ 64 (72)
T cd01719 5 LKKYMDKKLSLKLNGNRKVSGILRGFD-PFMNLVLDDAVEVNS-G-----G----EKNNIGMVVIRGNSIV 64 (72)
T ss_pred hHHhCCCeEEEEECCCeEEEEEEEEEc-ccccEEeccEEEEcc-C-----C----ceeEeceEEECCCEEE
Confidence 467999999999999999999999999 67789999987 531 1 1 1234677999999998
No 14
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=93.14 E-value=0.19 Score=42.18 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=46.2
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+.-|+|+|..+| ..=-|.|+|+. +-..++ ...++.++-||+.|+
T Consensus 6 ~~~~~~~V~V~Lk~g~~~~G~L~~~D-~~mNlvL~~~~~~~~~~~----------~~~~~~v~IRG~~I~ 64 (67)
T cd01726 6 KAIIGRPVVVKLNSGVDYRGILACLD-GYMNIALEQTEEYVNGQL----------KNKYGDAFIRGNNVL 64 (67)
T ss_pred HhhCCCeEEEEECCCCEEEEEEEEEc-cceeeEEeeEEEEeCCce----------eeEeCCEEEECCEEE
Confidence 35799999999999999999999999 57788999987 432211 124567999999987
No 15
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=93.11 E-value=0.17 Score=43.08 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=46.7
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+..|.+--|+|+|..+|. .--|.|+|+. +-.++. ..-++.++.||+.|.
T Consensus 10 ~~~~~k~V~V~lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~~~~~----------~~~lg~v~iRG~~V~ 68 (72)
T PRK00737 10 NNALNSPVLVRLKGGREFRGELQGYDI-HMNLVLDNAEEIQDGEV----------VRKLGKVVIRGDNVV 68 (72)
T ss_pred HHhCCCEEEEEECCCCEEEEEEEEEcc-cceeEEeeEEEEcCCCe----------EeEcCcEEEeCCEEE
Confidence 467999999999999999999999998 6789999987 532211 124677999999998
No 16
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=91.93 E-value=0.42 Score=41.28 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=51.6
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-..|||++|.+..+.+=.|+|+|..+|. ...|.|.|+. +-++.+.............+.-++.||..|-
T Consensus 5 l~~~l~~~V~V~l~dgR~~~G~L~~~D~-~~NlVL~~~~E~~~~~~~~~~~~~~~~~r~lG~v~iRG~~Vv 74 (79)
T cd01717 5 MLQLINYRLRVTLQDGRQFVGQFLAFDK-HMNLVLSDCEEFRKVKKKKSKNSEREEKRTLGLVLLRGENIV 74 (79)
T ss_pred hHHHcCCEEEEEECCCcEEEEEEEEEcC-ccCEEcCCEEEEEeccccccccccCcceeEeeeEEEcCCEEE
Confidence 4679999999999999999999999995 5779999998 7665543211111112234678999999887
No 17
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
Probab=90.91 E-value=0.6 Score=40.20 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=47.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-ccc-CCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQ-KGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGT-EgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+..|.|+|..+|.- --|.|.||. ..+ +|+.. .......++-||+.|+
T Consensus 13 ~~~~~~~V~V~lk~g~~~~G~L~~~D~~-mNlvL~d~~e~~~~~~~~~-------~~~~~~~~~IRG~~I~ 75 (79)
T COG1958 13 KKLLNKRVLVKLKNGREYRGTLVGFDQY-MNLVLDDVEEIISHDGEKN-------VRRLGGEVLIRGDNIV 75 (79)
T ss_pred HHhhCCEEEEEECCCCEEEEEEEEEccc-eeEEEeceEEEeccCCccc-------cceeccEEEEECCcEE
Confidence 5689999999999999999999999974 457899998 665 33321 1222237999999998
No 18
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=90.10 E-value=0.78 Score=40.13 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=46.4
Q ss_pred ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..+|++|.+--|.+..|+|+|..+|.- =-|.|+||. ...++. ..-..++.|..||+.|+
T Consensus 8 ~l~g~~V~VeLKng~~~~G~L~~vD~~-MNi~L~n~~~~~~~~~--------~~~~~~~~v~IRG~~I~ 67 (81)
T cd01725 8 TLVGKEVTVELKNDLSIRGTLHSVDQY-LNIKLTNISVTDPEKY--------PHMLSVKNCFIRGSVVR 67 (81)
T ss_pred hCCCCEEEEEECCCcEEEEEEEEECCC-cccEEEEEEEEcCCCc--------ccccccCeEEEECCEEE
Confidence 458999999999999999999999974 478999998 543321 11233478999999999
No 19
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=89.97 E-value=0.65 Score=40.01 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=46.7
Q ss_pred ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..+|++|.+--|.+..|+|+|..+|. .-.|.|+||. ...+|.+. ..++.++-||+.|+
T Consensus 8 ~~~g~~V~VeLkng~~~~G~L~~~D~-~mNi~L~~~~~~~~~g~~~---------~~~~~v~IRG~~I~ 66 (76)
T cd01723 8 TAQNHPMLVELKNGETYNGHLVNCDN-WMNIHLREVICTSKDGDKF---------WKMPECYIRGNTIK 66 (76)
T ss_pred hcCCCEEEEEECCCCEEEEEEEEEcC-CCceEEEeEEEECCCCcEe---------eeCCcEEEeCCEEE
Confidence 46899999999999999999999997 6778999998 65444321 12366889999999
No 20
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=89.15 E-value=0.75 Score=39.35 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=47.4
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-c--ccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-L--EQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-f--GTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.-..||+++|.++.+.+-.|+|+|..+|.. --|.|.++. + .++ .+. ....+..|+.||+.|-
T Consensus 3 ~L~~~l~~~V~V~l~dgr~~~G~L~~~D~~-~NlvL~~~~E~~~~~~----~~~----~~~~lG~~~iRG~~I~ 67 (74)
T cd01727 3 TLEDYLNKTVSVITVDGRVIVGTLKGFDQA-TNLILDDSHERVYSSD----EGV----EQVVLGLYIIRGDNIA 67 (74)
T ss_pred hHHHhcCCEEEEEECCCcEEEEEEEEEccc-cCEEccceEEEEecCC----CCc----eeeEeceEEECCCEEE
Confidence 346799999999999999999999999986 678888875 2 221 111 1234688999999986
No 21
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=87.90 E-value=1.2 Score=37.91 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=47.0
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
...+|+.|.+--|.+..|.|+|..+|. .-.|.|+||. ...+|+. .-++.++-||+.|+
T Consensus 6 ~~~~g~~V~VeLk~g~~~~G~L~~~D~-~MNl~L~~~~~~~~~g~~----------~~~~~v~IRG~nI~ 64 (70)
T cd01721 6 HEAEGHIVTVELKTGEVYRGKLIEAED-NMNCQLKDVTVTARDGRV----------SQLEQVYIRGSKIR 64 (70)
T ss_pred hhCCCCEEEEEECCCcEEEEEEEEEcC-CceeEEEEEEEECCCCcE----------eEcCcEEEeCCEEE
Confidence 356899999999999999999999998 6689999997 4433321 13467999999998
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.72 E-value=2.2 Score=51.21 Aligned_cols=7 Identities=29% Similarity=0.928 Sum_probs=4.9
Q ss_pred CCCcccc
Q 005730 534 DFFDSLS 540 (680)
Q Consensus 534 sFFDsIS 540 (680)
.||-.|-
T Consensus 977 EFFaDi~ 983 (1102)
T KOG1924|consen 977 EFFADIR 983 (1102)
T ss_pred HHHHHHH
Confidence 7887664
No 23
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=87.66 E-value=1.2 Score=40.04 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=46.7
Q ss_pred ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..+|+.|.+--|.+..|+|+|.++|. .=-|.|+||. +-.++. ..-|+.++-||+.|+
T Consensus 8 ~l~g~~V~VeLKng~~~~G~L~~vD~-~MNl~L~~a~~~~~~~~----------~~~~~~v~IRG~nI~ 65 (90)
T cd01724 8 KLTNETVTIELKNGTIVHGTITGVDP-SMNTHLKNVKLTLKGRN----------PVPLDTLSIRGNNIR 65 (90)
T ss_pred hCCCCEEEEEECCCCEEEEEEEEEcC-ceeEEEEEEEEEcCCCc----------eeEcceEEEeCCEEE
Confidence 56899999999999999999999997 4579999998 543322 134678999999999
No 24
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=85.32 E-value=2.3 Score=37.30 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=48.8
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-..||+++|.+.-+.+-.|+|+|..+|. ---|.|.++. +-.+.. +..++.-....+.-++.||..|-
T Consensus 7 L~~~i~k~V~V~l~~gr~~~G~L~~~D~-~mNlvL~~~~E~~~~~~--~~~~~~~~~~~lG~v~iRG~nV~ 74 (81)
T cd01729 7 LSKYVDKKIRVKFQGGREVTGILKGYDQ-LLNLVLDDTVEYLRDPD--DPYKLTDKTRQLGLVVCRGTSVV 74 (81)
T ss_pred HHHhcCCeEEEEECCCcEEEEEEEEEcC-cccEEecCEEEEEccCC--cccccccceeEccEEEEcCCEEE
Confidence 3578999999999999999999999997 4568888886 432111 11112223345788999999987
No 25
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=85.02 E-value=4.8 Score=48.45 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 005730 255 NPSLPTGV 262 (680)
Q Consensus 255 ~~sl~~G~ 262 (680)
.+-+|-|+
T Consensus 607 aPvlP~gL 614 (1102)
T KOG1924|consen 607 APVLPFGL 614 (1102)
T ss_pred cccCCCCC
Confidence 33455555
No 26
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=83.53 E-value=2.5 Score=36.92 Aligned_cols=58 Identities=17% Similarity=0.367 Sum_probs=46.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
...+|+.|.+--|.+..|+|+|.++|.- =.|.|+||. ...++. ..-++.|+-||+.|+
T Consensus 15 ~~l~g~~V~VeLKng~~~~G~L~~vD~~-MNl~L~~~~~~~~~~~----------~~~~~~v~IRG~nI~ 73 (78)
T cd01733 15 QGLQGKVVTVELRNETTVTGRIASVDAF-MNIRLAKVTIIDRNGK----------QVQVEEIMVTGRNIR 73 (78)
T ss_pred HHCCCCEEEEEECCCCEEEEEEEEEcCC-ceeEEEEEEEEcCCCc----------eeECCcEEEECCEEE
Confidence 3568999999999999999999999974 578999998 532221 114688999999998
No 27
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=82.42 E-value=3.7 Score=35.80 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=47.6
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..|||+++.++-+.+--|+|+|..+|. ..-|.|.|+. |-+.... ........+.-++-||..|.
T Consensus 6 ~~~l~~~v~V~l~dgR~~~G~l~~~D~-~~NivL~~~~E~~~~~~~----~~~~~~r~lGlv~IrG~~Iv 70 (75)
T cd06168 6 RSLLGRTMRIHMTDGRTLVGVFLCTDR-DCNIILGSAQEYRPPPDS----FSPTEPRVLGLVMIPGHHIV 70 (75)
T ss_pred HHhcCCeEEEEEcCCeEEEEEEEEEcC-CCcEEecCcEEEEcccCc----cCCccEEEeeeEEEeCCeEE
Confidence 578999999999999999999999996 4568899986 4322111 11122335778999999987
No 28
>KOG1775 consensus U6 snRNA-associated Sm-like protein [RNA processing and modification]
Probab=76.32 E-value=1.3 Score=39.51 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=46.2
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-c--ccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-L--EQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-f--GTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
+.-|||||-+|=|+|-.++|+|...|-= -.+.|++|. | -+|||+.. -.+.|+..|..|-
T Consensus 13 DkcIgski~iimksdkE~~GtL~GFDd~-VNmvLeDvtEye~~~egr~~t---------k~~~iLLnGNni~ 74 (84)
T KOG1775|consen 13 DKCIGSKIWIIMKSDKEFVGTLVGFDDF-VNMVLEDVTEYEITPEGRRMT---------KLDQILLNGNNIT 74 (84)
T ss_pred HHhcCceEEEEEccCceeeeEEechHHH-HHHHHHhhhheeeCCCcceee---------eeeeeeecCCcEE
Confidence 4569999999999999999999988742 235688888 5 45776643 2377999999987
No 29
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=75.13 E-value=7.9 Score=33.80 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=45.4
Q ss_pred ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.+++++|.+..|.+-.|+|+|..+|. --.|.|+|+. += + ..++. ....+.-|+.||+.|.
T Consensus 10 ~~~~~~V~V~l~~gr~~~G~L~g~D~-~mNlvL~da~E~~-~--~~~~~----~~~~lg~v~iRG~nV~ 70 (76)
T cd01732 10 KCIGSRIWIVMKSDKEFVGTLLGFDD-YVNMVLEDVTEYE-I--TPEGR----KITKLDQILLNGNNIC 70 (76)
T ss_pred HhCCCEEEEEECCCeEEEEEEEEecc-ceEEEEccEEEEE-E--cCCCc----eeeEcCeEEEeCCeEE
Confidence 46899999999999999999999996 5778999986 42 1 11111 1223577999999998
No 30
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=67.34 E-value=16 Score=32.92 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=47.5
Q ss_pred ccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCC---CCCCCCCcceeEEEEEcCccc
Q 005730 21 IGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIG---PQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 21 IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~---~~IPps~~vyeyIvFrgsDIK 86 (680)
.|++|-+.-|.+-.|.|+|..+|. .-.|.|.|+. +-++.-+... .+.......+..|+.||..|.
T Consensus 13 ~~~~V~V~lr~~r~~~G~L~~fD~-hmNlvL~d~~E~~~~~~k~~~~~~~~~~~~~r~lg~v~iRGd~Vv 81 (87)
T cd01720 13 NNTQVLINCRNNKKLLGRVKAFDR-HCNMVLENVKEMWTEVPKTGKGKKAKPVNKDRFISKMFLRGDSVI 81 (87)
T ss_pred CCCEEEEEEcCCCEEEEEEEEecC-ccEEEEcceEEEeeccccccccccccceeeeeEcccEEEeCCEEE
Confidence 389999999999999999999996 6789999998 6554322111 111122233588999999987
No 31
>cd01730 LSm3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=66.34 E-value=19 Score=31.45 Aligned_cols=67 Identities=9% Similarity=0.119 Sum_probs=46.0
Q ss_pred ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccC-CCCCCC--CCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQK-GEEKIG--PQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTE-gR~~~~--~~IPps~~vyeyIvFrgsDIK 86 (680)
..++++|.++.|.+-.|+|+|...|. --.|.|.|+. +-.+ ...... ..+......+.-++.||..|-
T Consensus 8 ~~~~k~V~V~l~~gr~~~G~L~~fD~-~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lg~~~iRGd~Vv 78 (82)
T cd01730 8 LSLDERVYVKLRGDRELRGRLHAYDQ-HLNMILGDVEETITTVEIDEETYEEIVKTTKRNIPMLFVRGDSVI 78 (82)
T ss_pred HhCCCEEEEEECCCCEEEEEEEEEcc-ceEEeccceEEEeecccccccccccccceeEEEcCeEEEeCCEEE
Confidence 45899999999999999999999997 4678999987 4322 111100 101112234577888998886
No 32
>PF06372 Gemin6: Gemin6 protein; InterPro: IPR009422 This family consists of several mammalian Gemin6 proteins. The exact function of Gemin6 is unknown but it has been found to form part of the Survival of motor neuron complex. The SMN complex plays a key role in the biogenesis of spliceosomal small nuclear ribonucleoproteins (snRNPs) and other ribonucleoprotein particles [].; GO: 0000245 spliceosome assembly, 0005634 nucleus; PDB: 1Y96_A.
Probab=61.57 E-value=11 Score=37.65 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=28.6
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRN 53 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~n 53 (680)
..|+|+.+.+.... --|.|.||+||+.-.+|.|-|
T Consensus 13 ~~yv~K~VkV~~~d-~~~~G~v~TiDPVS~siVL~~ 47 (166)
T PF06372_consen 13 QDYVGKEVKVTLSD-KEYKGWVYTIDPVSASIVLVN 47 (166)
T ss_dssp HCTTT-EEEEEETT-EEEEEEEEEE-TTT--EEEEE
T ss_pred HHhhCcEEEEEEec-cEEEEEEEEeCCCCCeEEEEE
Confidence 57999999999997 889999999999999999976
No 33
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=45.83 E-value=13 Score=38.53 Aligned_cols=47 Identities=32% Similarity=0.626 Sum_probs=32.8
Q ss_pred HHHHHHHhccCCCCCCCcce-----------------ehhhHHHHHHhhhccCCccccccccccceeeeehh
Q 005730 619 MVLIVRCFNLHVPPSHQDYI-----------------YRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPI 673 (680)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (680)
++.-|+.|||..+++.-|+- +.|-+||| |+.||--+ +.++-++ ||||
T Consensus 2 l~~nL~lL~~d~~~~~~~~~~~~~~~~~mf~kpn~~afe~vl~~L--f~~lD~~~---~~~~f~~---~wP~ 65 (247)
T PF14661_consen 2 LWTNLRLLGFDPPPDWPDITFRTLFGKNMFDKPNKKAFEWVLHFL--FTILDPEE---AKKKFRP---CWPP 65 (247)
T ss_pred HHHHHHHcCCCCCcccccccccccCCchhccCcCHHHHHHHHHHH--HHHcCHHH---HHHHhhc---cCCC
Confidence 45568899998888875443 35889998 79999544 4456666 4564
No 34
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=39.82 E-value=1.9e+02 Score=32.76 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=19.0
Q ss_pred CCCCcccccceeEEEecCCceeEEEeeeecCCC
Q 005730 14 SGSADSYIGSLISLTSKSEIRYEGVLFNINTEE 46 (680)
Q Consensus 14 ~~~~~~~IGs~ISLISksdIRYeGiL~~Id~e~ 46 (680)
.+-+..|-|+||.+ |+|-|.-.-+++
T Consensus 70 ~~~~~s~~Grk~~~-------YvGNL~W~TTD~ 95 (498)
T KOG4849|consen 70 AKPATSSEGRKYCC-------YVGNLLWYTTDA 95 (498)
T ss_pred CCccccccCceEEE-------EecceeEEeccH
Confidence 34567788888887 999887665544
No 35
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.70 E-value=89 Score=36.11 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.5
Q ss_pred ccCCCCceeec
Q 005730 115 RKDIQDLQVKS 125 (680)
Q Consensus 115 ~~~~~dl~v~~ 125 (680)
||-.+++++..
T Consensus 337 rk~r~~~k~~~ 347 (483)
T KOG2236|consen 337 RKRRSKVKFSD 347 (483)
T ss_pred hhccccccccc
Confidence 33344444433
No 36
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=35.48 E-value=3.4e+02 Score=33.58 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=8.8
Q ss_pred ccccccCC--CCCCCC
Q 005730 212 PMYWQGFY--GSPNGL 225 (680)
Q Consensus 212 PmywqGyy--~pp~g~ 225 (680)
|+|-+||. .+|+|+
T Consensus 623 P~~~Pg~np~~pPpg~ 638 (894)
T KOG0132|consen 623 PPLRPGYNPYPPPPGF 638 (894)
T ss_pred CCCCCCCCCCCCCccc
Confidence 37777876 445555
No 37
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=34.44 E-value=2.4e+02 Score=32.03 Aligned_cols=25 Identities=36% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCC
Q 005730 226 QGQQQPLLQPPPGLSMLPSMQQSMQYP 252 (680)
Q Consensus 226 ~~~Qqp~~~pppgLs~P~~~qQ~mQyP 252 (680)
..+|++.+..||. +|+.+||+.|-|
T Consensus 262 PpP~~t~~G~pP~--pp~~~qq~p~pp 286 (498)
T KOG4849|consen 262 PPPQQTMLGNPPL--PPQQIQQQPQPP 286 (498)
T ss_pred CCCccccCCCCCC--CchhhccCCCCC
Confidence 3455655655553 454444444443
No 38
>PF12287 Caprin-1_C: Cytoplasmic activation/proliferation-associated protein-1 C term; InterPro: IPR022070 This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C-terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C-terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism.
Probab=31.33 E-value=29 Score=37.99 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=5.2
Q ss_pred CCCcccCCCC
Q 005730 386 TPGQLLQPGL 395 (680)
Q Consensus 386 TpgQLlq~~~ 395 (680)
+.+|+.|..+
T Consensus 122 ~~~q~fq~p~ 131 (316)
T PF12287_consen 122 SQPQVFQSPP 131 (316)
T ss_pred CcccccccCC
Confidence 4556666443
No 39
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=30.19 E-value=5.6e+02 Score=31.90 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=4.7
Q ss_pred CCCCCccee
Q 005730 68 VPPSDKIYE 76 (680)
Q Consensus 68 IPps~~vye 76 (680)
|++....|=
T Consensus 454 i~~R~cAfI 462 (894)
T KOG0132|consen 454 IPPRGCAFI 462 (894)
T ss_pred ccCCceeEE
Confidence 555555544
No 40
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=29.65 E-value=42 Score=39.59 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=17.5
Q ss_pred cCCccccHHHHhhhcc--hhhhhh
Q 005730 477 RFTEDFDFIAMNEKFN--KDEVWG 498 (680)
Q Consensus 477 kFteDFDFea~NeKFn--KdEv~g 498 (680)
-|.-|=||+..-+||+ |.|+.|
T Consensus 386 vFk~dp~f~ene~kydaikkeiLg 409 (739)
T KOG2140|consen 386 VFKKDPNFEENEEKYDAIKKEILG 409 (739)
T ss_pred ccccCccHHHHHHHHHHHHHHHhc
Confidence 4888999999999998 555554
No 41
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=28.17 E-value=91 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=22.0
Q ss_pred cccceeEEEecCCceeEEEeeeecCCCC
Q 005730 20 YIGSLISLTSKSEIRYEGVLFNINTEES 47 (680)
Q Consensus 20 ~IGs~ISLISksdIRYeGiL~~Id~e~s 47 (680)
.||+.|++.. .+-.++|+...||.+-.
T Consensus 1 ~lG~~V~v~~-~~~~~~G~~~gId~~G~ 27 (48)
T PF02237_consen 1 TLGQEVRVET-GDGEIEGIAEGIDDDGA 27 (48)
T ss_dssp STTSEEEEEE-TSCEEEEEEEEEETTSE
T ss_pred CCCCEEEEEE-CCeEEEEEEEEECCCCE
Confidence 4899999999 55558999999987544
No 42
>KOG1073 consensus Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.20 E-value=99 Score=34.67 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=30.1
Q ss_pred ccccC-CCCCcccccccccCCCCCCCCCchhhhcccccccccC
Q 005730 528 PVYVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEVSRWA 569 (680)
Q Consensus 528 ~~YdK-dsFFDsISCda~dr~g~ngR~r~sEeRklntETFG~~ 569 (680)
..|++ ..+|+++.-... -+.+.++.++|-.++-++...
T Consensus 253 ~~~n~~s~r~~~~~~~~~----~n~~~~~~~~~~~~~~~q~~~ 291 (361)
T KOG1073|consen 253 SFYNQQSSRFTTISVSRV----SNTNSRNQEKRGLNNGGQSQQ 291 (361)
T ss_pred cccccccccccccccccc----ccccccccccccccCCCcccc
Confidence 56664 788888876654 467788899999999999986
No 43
>PRK14631 hypothetical protein; Provisional
Probab=26.11 E-value=92 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=30.9
Q ss_pred CCcccccceeEEEec----CCceeEEEeeeecCCCCeeeec
Q 005730 16 SADSYIGSLISLTSK----SEIRYEGVLFNINTEESSIGLR 52 (680)
Q Consensus 16 ~~~~~IGs~ISLISk----sdIRYeGiL~~Id~e~sTI~L~ 52 (680)
+...|+|.+|.|..+ ..-+|.|+|..+|.++.+|+|.
T Consensus 111 df~r~~G~~V~V~l~~~~~~~k~~~G~L~~v~~~~~~v~l~ 151 (174)
T PRK14631 111 QLQGYIGQQVALRLIAAVENRRKFQAKLLAVDLENEEIQVE 151 (174)
T ss_pred HHHHhCCCeEEEEEecccCCceEEEEEEEEeecCCCEEEEE
Confidence 446799999999985 4478999999999878888885
No 44
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=25.84 E-value=23 Score=41.43 Aligned_cols=24 Identities=17% Similarity=-0.271 Sum_probs=0.0
Q ss_pred CCCcccccCCCCc-ccccCCceEEE
Q 005730 577 RWPVTGFLSRKGL-WLCSTRSWIRI 600 (680)
Q Consensus 577 ~~~~~g~~~~~g~-~~~~~~~~~~~ 600 (680)
.|++||.|||+|. +...+||+++|
T Consensus 530 ~~~~g~gr~rg~~~ggg~grg~~r~ 554 (556)
T PF05918_consen 530 GRGRGGGRGRGRRSGGGRGRGRGRG 554 (556)
T ss_dssp -------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCccccc
Confidence 3555666666655 33444556443
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=20 Score=40.73 Aligned_cols=13 Identities=62% Similarity=1.712 Sum_probs=10.8
Q ss_pred HHHHHhhhccCCc
Q 005730 644 YFLLWFCCWDLGE 656 (680)
Q Consensus 644 ~~~~~~~~~~~~~ 656 (680)
|--+|-|||||.|
T Consensus 235 ~~~~wSC~wDlde 247 (463)
T KOG1645|consen 235 YNQIWSCCWDLDE 247 (463)
T ss_pred cCCceeeeeccCC
Confidence 3468999999987
No 46
>cd01718 Sm_E The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit E binds subunits F and G to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=24.74 E-value=1.7e+02 Score=26.19 Aligned_cols=58 Identities=21% Similarity=0.428 Sum_probs=37.7
Q ss_pred ccccce--eEE--EecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSL--ISL--TSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~--ISL--ISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.|+..+ |.+ .-+.+..|+|+|..+|.- --|.|.|+. +-.+ +. ....++-|+-||+.|.
T Consensus 13 ~~l~~~~~V~V~l~~~~g~~~~G~L~gfD~~-mNlvL~d~~E~~~~-----~~----~~~~lG~iliRGnnV~ 75 (79)
T cd01718 13 RFLQSKQRVQIWLYEQTDLRIEGVIIGFDEY-MNLVLDDAEEVHLK-----TK----TRKPLGRILLKGDNIT 75 (79)
T ss_pred HHHccCcEEEEEEEeCCCcEEEEEEEEEccc-eeEEEcCEEEEecC-----Cc----eEeEcCcEEEeCCEEE
Confidence 355553 333 346999999999999974 368888875 3211 01 1123567999999887
No 47
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=24.61 E-value=1.4e+02 Score=27.29 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=35.4
Q ss_pred eEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 25 ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
|-+..+.+..|+|+|..+|.- --|.|.|+. +=. ++. ...-+..|+-||+.|-
T Consensus 31 i~l~~~~~r~~~G~L~gfD~~-mNlVL~d~~E~~~-----~~~----~~~~lG~ilIRGnnV~ 83 (89)
T PTZ00138 31 IWLYDHPNLRIEGKILGFDEY-MNMVLDDAEEVYT-----KKN----TRKDLGRILLKGDNIT 83 (89)
T ss_pred EEEEeCCCcEEEEEEEEEccc-ceEEEccEEEEec-----CCc----eeeEcCeEEEcCCEEE
Confidence 334456679999999999974 468888875 311 111 1234677999999987
No 48
>PRK14638 hypothetical protein; Provisional
Probab=24.20 E-value=1e+02 Score=30.19 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeec
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLR 52 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~ 52 (680)
+...|+|.+|.+..+..-+|+|+|..+|- .+|+|.
T Consensus 94 ~f~r~~G~~v~V~~~~~k~~~G~L~~~~~--~~i~l~ 128 (150)
T PRK14638 94 DYVRFTGKLAKIVTKDGKTFIGRIESFVD--GTITIS 128 (150)
T ss_pred HHHHhCCCEEEEEECCCcEEEEEEEEEeC--CEEEEE
Confidence 44578999999999999999999999984 566664
No 49
>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]
Probab=24.11 E-value=42 Score=30.08 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=40.1
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-..+||+++-+-=.+++-|.|+|..||-= =.|+|+.-. |- ++. -...|.-...||+.|-
T Consensus 11 l~~iiGr~V~VKl~sgvdyrG~l~~lDgy-mNiaLe~tee~~------ngq----l~n~ygdaFirGnnVl 70 (77)
T KOG1783|consen 11 LKAIIGRTVVVKLNSGVDYRGTLVCLDGY-MNIALESTEEYV------NGQ----LKNKYGDAFIRGNNVL 70 (77)
T ss_pred HHHHhCCeEEEEecCCccccceehhhhhH-HHHHHHHHHHHh------cCc----ccccccceeeccccEE
Confidence 45789999999999999999999999952 234555433 21 221 1234555667888776
No 50
>PRK14644 hypothetical protein; Provisional
Probab=24.03 E-value=1.1e+02 Score=29.52 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCcccccceeEEEecCC----ceeEEEeeeecCCCCeeeec
Q 005730 16 SADSYIGSLISLTSKSE----IRYEGVLFNINTEESSIGLR 52 (680)
Q Consensus 16 ~~~~~IGs~ISLISksd----IRYeGiL~~Id~e~sTI~L~ 52 (680)
+...|+|.+|.+..+.. -+|+|+|..+|- .+|+|.
T Consensus 79 ~f~r~~G~~v~V~l~~~~~~~~~~~G~L~~v~~--~~i~l~ 117 (136)
T PRK14644 79 ELENHIGEIIDVSLNKEVNKTDFITGELLENNP--ETITLK 117 (136)
T ss_pred HHHHhCCCeEEEEEccCcCCeEEEEEEEEEEeC--CEEEEE
Confidence 45679999999988776 789999999985 677775
No 51
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=23.99 E-value=1.5e+03 Score=29.95 Aligned_cols=7 Identities=57% Similarity=0.695 Sum_probs=2.7
Q ss_pred EEEEcCc
Q 005730 78 ILFRGSD 84 (680)
Q Consensus 78 IvFrgsD 84 (680)
|.|-|+-
T Consensus 1329 i~f~gsy 1335 (1605)
T KOG0260|consen 1329 ISFDGSY 1335 (1605)
T ss_pred Eeecccc
Confidence 3333333
No 52
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.78 E-value=18 Score=34.96 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=35.7
Q ss_pred ceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 33 IRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 33 IRYeGiL~~Id~e~sTI~L~nVRfGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-=|+||+-..+ ++++....|.||.| |-..+||+||+.+..+++
T Consensus 8 ~FWvGv~E~~~--~~~~~v~rv~FG~E---------P~d~Ei~~fi~~~~~~L~ 50 (132)
T PF11208_consen 8 PFWVGVFERHE--DGKYKVARVTFGAE---------PKDPEIYEFILKHWYKLR 50 (132)
T ss_pred CcEEEEEEEEE--CCEEEEEEEeeCCC---------CCcHHHHHHHHHHHHHhc
Confidence 34899999886 58899999889964 566789999999988887
No 53
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=21.21 E-value=1.7e+02 Score=39.07 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=18.2
Q ss_pred cceeEEEEEcCccccccccccccCCCCCCcccccccchhhcccc
Q 005730 73 KIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRK 116 (680)
Q Consensus 73 ~vyeyIvFrgsDIK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (680)
-.|||-+|||.+ -+||-||+-+..
T Consensus 1646 GAYeY~L~kg~~--------------------d~nWYLrS~l~~ 1669 (2039)
T PRK15319 1646 GLYTYRLYWNES--------------------DNDWYLASKAQS 1669 (2039)
T ss_pred ccEEEEEEcCCC--------------------CCCceEeeCCCC
Confidence 469999999742 259999997653
No 54
>cd01735 LSm12_N LSm12 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm12 has a novel methyltransferase domain.
Probab=21.16 E-value=1.8e+02 Score=25.06 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.4
Q ss_pred cccceeEEEecCCceeEEEeeeecCCCCeeeec
Q 005730 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLR 52 (680)
Q Consensus 20 ~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~ 52 (680)
.||+++++.+-.+=.+||.|...|..-.-+.|+
T Consensus 4 ~iGs~V~~kTc~g~~ieGEV~afD~~tk~lIlk 36 (61)
T cd01735 4 SVGSQVSCRTCFEQRLQGEVVAFDYPSKMLILK 36 (61)
T ss_pred ccccEEEEEecCCceEEEEEEEecCCCcEEEEE
Confidence 589999999999999999999999986666665
No 55
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=20.99 E-value=4.5e+02 Score=29.90 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=10.5
Q ss_pred eeEEEEEcC-ccccccccccccCC
Q 005730 75 YEYILFRGS-DIKHCLLTITGDAI 97 (680)
Q Consensus 75 yeyIvFrgs-DIK~~~~~~~~~~~ 97 (680)
|-||.|.-. |.+.|+..+.|-.|
T Consensus 221 ~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 221 FAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred EEEEEECCHHHHHHHHHHhCCcEe
Confidence 666776432 23334433333333
Done!