Query 005730
Match_columns 680
No_of_seqs 187 out of 234
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fb7_A SM-like protein, LSM-14 100.0 2.1E-35 7.3E-40 259.4 8.0 72 14-86 11-83 (95)
2 2vxe_A CG10686-PA; EDC3, CAR-1 100.0 2.2E-34 7.5E-39 250.2 9.8 70 16-86 7-77 (88)
3 2vc8_A Enhancer of mRNA-decapp 99.2 2E-11 6.9E-16 105.6 5.9 60 15-86 2-62 (84)
4 3pgw_B SM B; protein-RNA compl 96.8 0.033 1.1E-06 56.2 15.6 70 16-86 8-78 (231)
5 2rm4_A CG6311-PB, DM EDC3; enh 96.5 0.0092 3.1E-07 53.4 8.2 60 14-86 4-65 (103)
6 4a53_A EDC3; RNA binding prote 95.5 0.017 5.9E-07 53.5 5.6 55 13-86 3-57 (125)
7 1y96_A Gemin6, SIP2, GEM-assoc 95.0 0.041 1.4E-06 48.1 6.3 55 17-86 12-66 (86)
8 4a53_A EDC3; RNA binding prote 94.9 0.017 5.9E-07 53.5 3.8 28 475-502 96-123 (125)
9 1d3b_B Protein (small nuclear 94.9 0.045 1.5E-06 46.8 6.1 70 16-86 8-78 (91)
10 3s6n_G Small nuclear ribonucle 93.6 0.09 3.1E-06 43.8 5.2 60 16-86 8-68 (76)
11 1d3b_A Protein (small nuclear 93.5 0.11 3.8E-06 43.3 5.6 58 18-86 11-69 (75)
12 1h64_1 SnRNP SM-like protein; 93.3 0.095 3.2E-06 43.2 4.8 58 18-86 10-68 (75)
13 4emk_A U6 snRNA-associated SM- 93.1 0.15 5.1E-06 44.8 6.0 59 18-86 26-85 (94)
14 1i4k_A Putative snRNP SM-like 93.1 0.1 3.6E-06 43.1 4.8 58 18-86 10-68 (77)
15 1th7_A SnRNP-2, small nuclear 92.5 0.17 5.9E-06 42.4 5.3 58 18-86 15-73 (81)
16 1i8f_A Putative snRNP SM-like 92.4 0.14 4.7E-06 43.1 4.6 57 18-86 17-74 (81)
17 2fwk_A U6 snRNA-associated SM- 92.3 0.15 5.2E-06 46.2 5.1 68 18-86 34-107 (121)
18 1b34_A Protein (small nuclear 92.2 0.23 7.9E-06 44.9 6.2 58 18-86 8-66 (119)
19 1mgq_A SM-like protein; LSM, R 91.7 0.13 4.4E-06 43.5 3.7 60 16-86 19-79 (83)
20 4emh_A Probable U6 snRNA-assoc 91.6 0.22 7.6E-06 44.4 5.3 60 17-86 21-81 (105)
21 4emk_B U6 snRNA-associated SM- 91.4 0.26 8.8E-06 40.8 5.2 58 18-86 10-68 (75)
22 4emk_C U6 snRNA-associated SM- 90.9 0.36 1.2E-05 43.5 5.9 68 15-86 26-94 (113)
23 1ljo_A Archaeal SM-like protei 90.8 0.29 9.8E-06 40.6 4.9 58 18-86 11-70 (77)
24 1m5q_A SMAP3, small nuclear ri 90.7 0.45 1.5E-05 44.0 6.6 54 18-86 6-60 (130)
25 2y9a_D Small nuclear ribonucle 90.6 0.42 1.4E-05 44.0 6.2 58 18-86 11-69 (126)
26 3bw1_A SMX4 protein, U6 snRNA- 90.4 0.35 1.2E-05 42.1 5.3 65 18-86 16-81 (96)
27 2wax_B Enhancer of mRNA-decapp 89.6 0.099 3.4E-06 40.8 1.1 24 479-502 17-40 (44)
28 1n9r_A SMF, small nuclear ribo 89.6 0.29 9.8E-06 42.7 4.1 60 16-86 25-86 (93)
29 3s6n_F Small nuclear ribonucle 84.9 0.81 2.8E-05 39.1 4.1 58 18-86 12-70 (86)
30 4emg_A Probable U6 snRNA-assoc 83.8 1.4 4.8E-05 38.2 5.2 67 18-86 15-86 (93)
31 3d3j_A Enhancer of mRNA-decapp 83.5 0.22 7.5E-06 51.4 0.0 23 481-503 1-23 (306)
32 3s6n_E Small nuclear ribonucle 76.4 2.5 8.5E-05 36.8 4.3 58 19-86 23-85 (92)
33 1b34_B Protein (small nuclear 74.7 5.4 0.00019 35.8 6.2 67 19-86 34-107 (118)
34 1ycy_A Conserved hypothetical 40.3 16 0.00055 30.7 2.6 42 18-61 12-55 (71)
35 1jg5_A GTP cyclohydrolase I fe 23.6 11 0.00039 32.8 -1.1 41 87-127 12-52 (83)
36 1nz9_A Transcription antitermi 22.3 59 0.002 25.3 2.9 38 21-59 7-45 (58)
No 1
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=100.00 E-value=2.1e-35 Score=259.42 Aligned_cols=72 Identities=47% Similarity=0.812 Sum_probs=65.4
Q ss_pred CCCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 14 SGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 14 ~~~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
++++.+|||++||||||+|||||||||+||++++||+|+||| ||||||++++ +|||+++|||||+|||+|||
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~-~ipp~~~vyeyIvFrGsDIK 83 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-PIAPRDETFEYIIFRGSDIK 83 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS-CCCSCCCCSSCEEECSTTEE
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC-ccCCCCcceeEEEEcCCCcc
Confidence 357899999999999999999999999999999999999999 9999999874 59999999999999999999
No 2
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-34 Score=250.18 Aligned_cols=70 Identities=44% Similarity=0.758 Sum_probs=67.5
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|||++||||||+|||||||||+||++++||+|+||| ||||||+++ ++|||+++|||||+|||+|||
T Consensus 7 ~~~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~-~~ipp~~~vy~yIvFrgsDIK 77 (88)
T 2vxe_A 7 GGLPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQ-FQIAPQSQIYDYILFRGSDIK 77 (88)
T ss_dssp SSSCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCS-SCCCCCCSCEEEEEEETTTEE
T ss_pred CCCcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCC-cccCCCCceeeEEEEccCCcc
Confidence 3599999999999999999999999999999999999999 999999975 679999999999999999999
No 3
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=105.64 Aligned_cols=60 Identities=22% Similarity=0.422 Sum_probs=49.7
Q ss_pred CCCcccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 15 GSADSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 15 ~~~~~~IGs~ISLISksdI-RYeGiL~~Id~e~sTI~L~nVRfGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
+.++.||||.|||.++.+| +|+|+|++||+.++||+|+|| | .+|. .+++.+ |+|++.||+
T Consensus 2 ~Ma~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~-f------~NG~-~~~s~e----Vtls~~DI~ 62 (84)
T 2vc8_A 2 AMATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP-F------HNGV-KCLVPE----VTFRAGDIT 62 (84)
T ss_dssp ---CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE-E------ETTE-ECSSSE----EEEEGGGCS
T ss_pred cccccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh-h------hCCC-CCCCcE----EEEEecChh
Confidence 3568999999999999999 999999999999999999999 4 2333 344443 999999999
No 4
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=96.76 E-value=0.033 Score=56.19 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=52.8
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
....||+++|.++-|.+-.|+|+|..+|. .--|.|+||. |=++..+.+....-..+..+..|+.||+.|.
T Consensus 8 kL~klIdKrV~V~LkdGRel~GtLkgFDq-~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV 78 (231)
T 3pgw_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFDK-HMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV 78 (231)
T ss_pred HHHHhcCCeEEEEECCCcEEEEEEEEEcc-cccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEE
Confidence 45789999999999999999999999995 6789999999 7643221110111123456778999999999
No 5
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=96.45 E-value=0.0092 Score=53.36 Aligned_cols=60 Identities=17% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCCCcccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 14 SGSADSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 14 ~~~~~~~IGs~ISLISksdI-RYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
+-..+.|||+.|||-...++ -|.|.+..||. .+|+|.+.- =|- |-.-.+=| ++|+..||+
T Consensus 4 ~~~~edwiG~~VSI~C~d~LGVyQG~I~~V~~--~~ItL~kaFrNGi----------plk~~~~E-VtLsa~DI~ 65 (103)
T 2rm4_A 4 GPTDQDWIGCAVSIACDEVLGVFQGLIKQISA--EEITIVRAFRNGV----------PLRKQNAE-VVLKCTDIR 65 (103)
T ss_dssp SCCSGGGTTCEEEEEECTTTCEEEEEEEEEET--TEEEEEEEEETTE----------ECSCSSSC-EEEETTTEE
T ss_pred CccccceeceEEEEeeCCcceEeeEEEEEccc--ceeEEhhhhhcCc----------CcCCCCce-EEEEecchh
Confidence 44567999999999999999 89999999996 559998754 443 22222223 899999999
No 6
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.46 E-value=0.017 Score=53.50 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=46.4
Q ss_pred CCCCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 13 SSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 13 ~~~~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVRfGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
|+-+..+|||.+|.|.=|.+-+|.|+|..||...-|+.|+||+. ..+.++++||+
T Consensus 3 ~~~~~sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~-------------------s~~~I~asdI~ 57 (125)
T 4a53_A 3 MGMSVADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLAND-------------------STKSIVTKDIK 57 (125)
T ss_dssp CCCCHHHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTT-------------------EEEEEEGGGEE
T ss_pred ccccHHHhcCceEEEEECCCCEeeEEEEeecCCeeEEecccccc-------------------ccceeeccccc
Confidence 34577899999999999999999999999999887777799841 11278999999
No 7
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.04 E-value=0.041 Score=48.09 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=46.0
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVRfGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-..|||+++.++...+=.|+|+||++|+..-.|.|.|. -.++-|--++-.|.-||
T Consensus 12 l~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---------------~~~~~~~~~iI~G~aI~ 66 (86)
T 1y96_A 12 WQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---------------LEDGSMSVTGIMGHAVQ 66 (86)
T ss_dssp HHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---------------CTTSCEEEEEECGGGEE
T ss_pred HHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---------------ccCCeEEEEEEecceEE
Confidence 35799999999999999999999999999999999984 11333455777888888
No 8
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=94.92 E-value=0.017 Score=53.50 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=24.2
Q ss_pred cccCCccccHHHHhhhcchhhhhhhccc
Q 005730 475 ATRFTEDFDFIAMNEKFNKDEVWGHLGK 502 (680)
Q Consensus 475 ~~kFteDFDFea~NeKFnKdEv~g~Lgk 502 (680)
.+..+|||||+..-+||||..++.+|.+
T Consensus 96 ~~d~~~dFDFq~nL~~FnKk~vF~ql~~ 123 (125)
T 4a53_A 96 SMDCDEEFDFAANLEKFDKKQVFAEFRE 123 (125)
T ss_dssp CSSSSSCCCCTBTTBCSSTTCCSSCCCS
T ss_pred ccccccccchhhhHHhhhHHHHHHHHhh
Confidence 3469999999999999999999987753
No 9
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=94.86 E-value=0.045 Score=46.77 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=51.1
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
....|||++|.+.-+.+-.|+|+|..+| +.--|.|+|+. |-++-........-....-+..|+.||+.|.
T Consensus 8 ~L~~~~~k~V~V~l~~gr~~~G~L~~~D-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~ 78 (91)
T 1d3b_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFD-KHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV 78 (91)
T ss_dssp CCGGGTTSEEEEEETTCCEEEEEEEECC-TTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEE
T ss_pred HHHHHcCCcEEEEECCCeEEEEEEEEEC-CCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEE
Confidence 5688999999999999999999999999 56789999998 7543211100000112234567999999999
No 10
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=93.61 E-value=0.09 Score=43.78 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=43.6
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.-..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++. ...+..++.||+.|.
T Consensus 8 ~L~~~~~k~V~V~Lk~gr~~~G~L~~~D-~~mNlvL~~~~e~~~~~~----------~~~lg~v~iRG~~I~ 68 (76)
T 3s6n_G 8 ELKKFMDKKLSLKLNGGRHVQGILRGFD-PFMNLVIDECVEMATSGQ----------QNNIGMVVIRGNSII 68 (76)
T ss_dssp ------CCEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEECCCC--------------CBSSEEECSSSEE
T ss_pred HHHHhCCCeEEEEECCCcEEEEEEEEEC-CcceEEEeceEEEccCCc----------EeEcCEEEECCCeEE
Confidence 4578999999999999999999999999 57789999988 643221 234567999999998
No 11
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=93.52 E-value=0.11 Score=43.31 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=48.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+..|+|+|..+| +.=-+.|+||. +-.+| ...-++.|+-||+.|+
T Consensus 11 ~~~~g~~V~VeLk~g~~~~G~L~~~D-~~MNl~L~~~~e~~~~~----------~~~~lg~v~IRG~nI~ 69 (75)
T 1d3b_A 11 HEAEGHIVTCETNTGEVYRGKLIEAE-DNMNCQMSNITVTYRDG----------RVAQLEQVYIRGCKIR 69 (75)
T ss_dssp HHTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEECTTS----------CEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEECCCcEEEEEEEEEc-cceeEEEEeEEEECCCC----------cEEEcCeEEEeCCEEE
Confidence 35899999999999999999999999 55789999998 65322 1345678999999998
No 12
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=93.30 E-value=0.095 Score=43.24 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=47.9
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++ ...-+..++.||+.|.
T Consensus 10 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~ 68 (75)
T 1h64_1 10 HRSLDKDVLVILKKGFEFRGRLIGYD-IHLNVVLADAEMIQDGE----------VVKRYGKIVIRGDNVL 68 (75)
T ss_dssp HTTTTSEEEEEETTSEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHHCCCEEEEEECCCCEEEEEEEEEe-CCCCeEEeeEEEEeeCC----------ceeECCEEEECCCEEE
Confidence 56899999999999999999999999 56789999998 65321 1234567999999998
No 13
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=93.11 E-value=0.15 Score=44.77 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=49.2
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..|+|++|.+.-|.+-.|+|+|..+|. ---|.|+|+. +-+++ . ....+..|+.||+.|.
T Consensus 26 ~~~l~k~V~V~Lk~gr~~~G~L~gfD~-~mNlvL~d~~E~~~~~-----~----~~~~lg~v~IRG~nI~ 85 (94)
T 4emk_A 26 DKCIGSNLWVIMKSEREFAGTLVGFDD-YVNIVLKDVTEYDTVT-----G----VTEKHSEMLLNGNGMC 85 (94)
T ss_dssp HHTTTSEEEEEESSSEEEEEEEEEECT-TCCEEEEEEEEEETTT-----C----CEEEEEEEEECSTTEE
T ss_pred HHHcCCeEEEEECCCcEEEEEEEEEcc-cCCeEeeeEEEEecCC-----C----cEeEcCEEEEcCCEEE
Confidence 468999999999999999999999995 6789999998 76421 1 1455788999999998
No 14
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=93.11 E-value=0.1 Score=43.09 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=48.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++ ...-+..++.||+.|.
T Consensus 10 ~~~~~~~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~ 68 (77)
T 1i4k_A 10 NRSLKSPVIVRLKGGREFRGTLDGYD-IHMNLVLLDAEEIQNGE----------VVRKVGSVVIRGDTVV 68 (77)
T ss_dssp HTTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEEcCCCEEEEEEEEEc-CCCCeEEeeEEEEecCC----------cEeECCEEEECCCEEE
Confidence 46899999999999999999999999 56889999998 65321 1234577999999998
No 15
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=92.48 E-value=0.17 Score=42.42 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=48.2
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++ ...-+..++.||+.|.
T Consensus 15 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~ 73 (81)
T 1th7_A 15 AESLNNLVLVKLKGNKEVRGMLRSYD-QHMNLVLSDSEEIQSDG----------SGKKLGTIVIRGDNVI 73 (81)
T ss_dssp HHHTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEECSSS----------CEEEEEEEEECGGGEE
T ss_pred HHhCCCeEEEEEcCCcEEEEEEEEEc-CCCCEEEccEEEEecCC----------ceeECCEEEECCCEEE
Confidence 57899999999999999999999999 56789999998 65321 1234677999999998
No 16
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=92.37 E-value=0.14 Score=43.10 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=47.9
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. + ++. ...-+..++.||+.|.
T Consensus 17 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~--~~~---------~~~~lg~v~iRG~~I~ 74 (81)
T 1i8f_A 17 QDSIGKQVLVKLRDSHEIRGILRSFD-QHVNLLLEDAEEI--IDG---------NVYKRGTMVVRGENVL 74 (81)
T ss_dssp HTTTTSEEEEEEGGGEEEEEEEEEEC-TTCCEEEEEEEEE--ETT---------EEEEEEEEEECGGGEE
T ss_pred HHHCCCeEEEEEcCCcEEEEEEEEEc-CCCeeEEccEEEE--cCC---------cccCCCEEEECCCEEE
Confidence 57899999999999999999999999 56889999999 8 221 1234677999999998
No 17
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=92.26 E-value=0.15 Score=46.15 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=48.9
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCC----CCC-CCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKI----GPQ-VPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~----~~~-IPps~~vyeyIvFrgsDIK 86 (680)
..+||++|.+.-+.+-.|+|+|..+| +.--|.|+||. +-++.++.+ +.+ .-....-+..|+.||+.|.
T Consensus 34 ~~~l~k~V~V~Lk~Gr~~~G~L~~fD-~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv 107 (121)
T 2fwk_A 34 DKCIGNRIYVVMKGDKEFSGVLRGFD-EYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVA 107 (121)
T ss_dssp HHTBTSBCEEEETTTEEECCEEEEEC-TTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEE
T ss_pred HHHcCCeEEEEECCCcEEEEEEEEEc-ccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEE
Confidence 47899999999999999999999999 57889999999 765422211 100 0011344678999999998
No 18
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=92.21 E-value=0.23 Score=44.91 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=47.9
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+..|+|+|..+| +.--|.|+||. +-. ++ ...-++.|+.||+.|.
T Consensus 8 ~~~~gk~V~V~Lk~g~~~~G~L~~~D-~~MNlvL~d~~e~~~-----~~-----~~~~lg~v~IRG~nI~ 66 (119)
T 1b34_A 8 MKLSHETVTIELKNGTQVHGTITGVD-VSMNTHLKAVKMTLK-----NR-----EPVQLETLSIRGNNIR 66 (119)
T ss_dssp HTCTTCEEEEEETTCCEEEEEEEEEC-TTCCEEEEEEEEECT-----TS-----CCEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEEcCCCEEEEEEEEEc-ccceEEeccEEEecC-----CC-----ceeEcceEEEcCCeEE
Confidence 46899999999999999999999999 56789999998 631 11 1245788999999999
No 19
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=91.70 E-value=0.13 Score=43.49 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=48.8
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.-..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++ ...-++.++.||+.|.
T Consensus 19 ~L~~~~~~~V~V~Lk~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~IRG~~I~ 79 (83)
T 1mgq_A 19 ALGNSLNSPVIIKLKGDREFRGVLKSFD-LHMNLVLNDAEELEDGE----------VTRRLGTVLIRGDNIV 79 (83)
T ss_dssp HHHHTTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHHHhCCCEEEEEEcCCcEEEEEEEEEC-CCceeEEccEEEEecCC----------cccCCCEEEECCCEEE
Confidence 3467899999999999999999999999 56789999998 65321 1234677999999987
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=91.63 E-value=0.22 Score=44.44 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=45.5
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 17 ~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
-..++|++|.+.-|.+..|+|+|..+|. ---|.|+||. +-.+|. ...-++.|+.||+.|.
T Consensus 21 L~~~igk~V~V~Lk~G~~~~G~L~~~D~-~MNlvL~d~~e~~~dg~---------~~~~lg~v~IRG~nI~ 81 (105)
T 4emh_A 21 LNATQGRPILVELKNGETFNGHLENCDN-YMNLTLREVIRTMPDGD---------KFFRLPECYIRGNNIK 81 (105)
T ss_dssp -----CCEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEECTTSC---------EEEEEEEEEECGGGEE
T ss_pred HHHhCCCEEEEEECCCCEEEEEEEEEcC-CceEEEEEEEEEccCCc---------eeeEcCeEEEeCCeEE
Confidence 3578999999999999999999999995 6689999998 643331 1234688999999999
No 21
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=91.45 E-value=0.26 Score=40.84 Aligned_cols=58 Identities=19% Similarity=0.433 Sum_probs=47.4
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+|. .--|.|+|+. +-. |. ....+..++.||+.|.
T Consensus 10 ~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~~-~~---------~~~~lg~v~iRG~~I~ 68 (75)
T 4emk_B 10 NKVIGKKVLIRLSSGVDYKGILSCLDG-YMNLALERTEEYVN-GK---------KTNVYGDAFIRGNNVL 68 (75)
T ss_dssp HHTTTSEEEEECTTSCEEEEEEEEECT-TCEEEEEEEEEEET-TE---------EEEEEEEEEEEGGGSS
T ss_pred HHhCCCeEEEEEcCCcEEEEEEEEEcC-cceEEEccEEEEec-CC---------cccEecEEEEcCCeEE
Confidence 468999999999999999999999995 6789999987 531 11 1235678999999998
No 22
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=90.86 E-value=0.36 Score=43.52 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=46.5
Q ss_pred CCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 15 GSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 15 ~~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..-..|||++|.++-+.+-.|+|+|..+|. .--|.|.|+. |-++.- +...--....+..|+.||..|.
T Consensus 26 ~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~-~mNLVL~d~~E~~~~~~---~~~~~~~~r~lG~v~IRG~nIv 94 (113)
T 4emk_C 26 LDLSRYQDQRIQATFTGGRQITGILKGFDQ-LMNLVLDDVEEQLRNPE---DGKLTGAIRKLGLVVVRGTTLV 94 (113)
T ss_dssp ------CCSEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEEC------------CCEEEEEEEEECTTTEE
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEEEEEcC-cccEEEeeEEEEEcCCC---CcccccceeEccEEEECCCeEE
Confidence 345689999999999999999999999995 6789999998 654311 1111223455678999999998
No 23
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=90.81 E-value=0.29 Score=40.60 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=47.7
Q ss_pred cccccceeEEEecCC-ceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSE-IRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksd-IRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+ -.|+|+|..+| +.--+.|+||. +-..+ ...-+..++.||+.|.
T Consensus 11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~nI~ 70 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVD-DYMNLYLTNAMECKGEE----------KVRSLGEIVLRGNNVV 70 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHHCCCEEEEEEeCCCEEEEEEEEEEC-CcceEEEeeEEEEecCC----------cEeECCeEEEeCCeEE
Confidence 468999999999999 99999999999 56789999998 65311 1234577999999998
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=90.75 E-value=0.45 Score=44.00 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=46.9
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +- ..-|..|+.||+.|.
T Consensus 6 ~~~igk~V~V~Lk~G~~~~G~L~~~D-~~MNlvL~d~~E~~--------------~~~lg~v~IRG~nI~ 60 (130)
T 1m5q_A 6 NNLLGREVQVVLSNGEVYKGVLHAVD-NQLNIVLANASNKA--------------GEKFNRVFIMYRYIV 60 (130)
T ss_dssp HHTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEECTT--------------CCEEEEEEECGGGEE
T ss_pred HHhCCCeEEEEECCCcEEEEEEEEEc-ccceeEEeeEEEEc--------------CCEeceEEEeCCeEE
Confidence 46899999999999999999999999 66789999988 61 135678999999998
No 25
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=90.56 E-value=0.42 Score=43.96 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=48.8
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+..|.|+|..+|. .=-|.|+||. +-.++. ..-++.|+.||+.|.
T Consensus 11 ~~~~gk~V~VeLknG~~~~G~L~~~D~-~MNi~L~dv~e~~~~g~----------~~~l~~v~IRGnnI~ 69 (126)
T 2y9a_D 11 HEAEGHIVTCETNTGEVYRGKLIEAED-NMNCQMSNITVTYRDGR----------VAQLEQVYIRGSKIR 69 (126)
T ss_dssp HSCSSCEEEEEESSCCEEEEEEEEECT-TSCEEEEEEEEECTTSC----------CEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEECCCcEEEEEEEEEcC-ceEEEEeeEEEEcCCCc----------EeecccEEEeCCEEE
Confidence 468999999999999999999999995 6789999999 643321 346788999999999
No 26
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.35 Score=42.06 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=49.3
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..+||++|.+.-|.+-.|+|+|..+| +---|.|.|+. +-++.-+.. .-....-+..++.||+.|.
T Consensus 16 ~~~i~k~V~V~Lk~gr~~~G~L~~fD-~~mNlVL~d~~E~~~~~~~~~---~~~~~r~lG~v~IRG~nVv 81 (96)
T 3bw1_A 16 KLNLDERVYIKLRGARTLVGTLQAFD-SHCNIVLSDAVETIYQLNNEE---LSESERRCEMVFIRGDTVT 81 (96)
T ss_dssp GGGTTSEEEEEEGGGCEEEEEEEEEC-TTCCEEEEEEEEEEECCSTTC---CCEEEEEEEEEEECGGGEE
T ss_pred HHHCCCeEEEEECCCcEEEEEEEEEC-CCCcEEEcCEEEEeccccccc---cCcceeEcCEEEECCCEEE
Confidence 57899999999999999999999999 56789999998 654322110 1112234567899999998
No 27
>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B
Probab=89.62 E-value=0.099 Score=40.81 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred CccccHHHHhhhcchhhhhhhccc
Q 005730 479 TEDFDFIAMNEKFNKDEVWGHLGK 502 (680)
Q Consensus 479 teDFDFea~NeKFnKdEv~g~Lgk 502 (680)
.+|||||..-++|+|..||.++++
T Consensus 17 ~~dFDFE~NLalFdKq~Vf~~~~~ 40 (44)
T 2wax_B 17 DTDFDFEGNLALFDKAAVFEEIDT 40 (44)
T ss_dssp SSCCCHHHHHTTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHHHHHHhc
Confidence 689999999999999999987753
No 28
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=89.61 E-value=0.29 Score=42.66 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=47.5
Q ss_pred CCcccccceeEEEecCC-ceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 16 SADSYIGSLISLTSKSE-IRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 16 ~~~~~IGs~ISLISksd-IRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.-..++|++|.+.-|.+ ..|+|+|..+| +---|.|+||. +- +|.. ..-++.|+.||+.|.
T Consensus 25 ~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D-~~MNlvL~d~~E~~-~~~~---------~~~lg~v~IRG~nI~ 86 (93)
T 1n9r_A 25 FLKGLVNHRVGVKLKFNSTEYRGTLVSTD-NYFNLQLNEAEEFV-AGVS---------HGTLGEIFIRCNNVL 86 (93)
T ss_dssp -CGGGTTSEEEEEESSTTEEEEEEEEECC-TTTCEEEEEEEEEE-TTEE---------EEECCSEEECGGGEE
T ss_pred HHHHhCCCEEEEEEcCCCEEEEEEEEEEc-cccEEEEeeEEEEc-CCCe---------EeEcCEEEEcCCeEE
Confidence 45778999999999999 99999999999 56789999998 63 2210 123456899999998
No 29
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=84.93 E-value=0.81 Score=39.11 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=46.5
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
..++|++|.+.-|.+-.|+|+|..+|. .--|.|+||. +- +|. ...-++.++.||+.|.
T Consensus 12 ~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~-~g~---------~~~~lg~v~IRG~nI~ 70 (86)
T 3s6n_F 12 NGLTGKPVMVKLKWGMEYKGYLVSVDG-YMNMQLANTEEYI-DGA---------LSGHLGEVLIRCNNVL 70 (86)
T ss_dssp HHHTTSEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEEE-TTE---------EEEEESSEEECGGGEE
T ss_pred HHhCCCeEEEEEcCCeEEEEEEEEEcC-ceEEEEeeEEEEc-CCc---------eeeEccEEEEeCCeEE
Confidence 468999999999999999999999996 6788999998 62 111 1123467999999999
No 30
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=83.79 E-value=1.4 Score=38.21 Aligned_cols=67 Identities=12% Similarity=0.229 Sum_probs=48.2
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCC----CCCCCCcceeEEEEEcCccc
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP----QVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~----~IPps~~vyeyIvFrgsDIK 86 (680)
..+||++|.+.-+.+-.|+|+|..+|. .--|.|.|+. +-++-.+ ++. ..-.....+..++.||..|.
T Consensus 15 ~~~~~~~V~V~l~~gr~~~G~L~~~D~-~mNlvL~d~~E~~~~~~~-~~~~~~~~~~~~~r~lG~v~iRG~nVv 86 (93)
T 4emg_A 15 RLSLDEIVYVKLRGDRELNGRLHAYDE-HLNMVLGDAEEIVTIFDD-EETDKDKALKTIRKHYEMLFVRGDSVI 86 (93)
T ss_dssp HTTTTSEEEEEETTTEEEEEEEEEECT-TCCEEEEEEEEEEC---------------CEEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEECCCcEEEEEEEEECC-cccEEeecEEEEEecccc-CCccccccccccEeEeceEEECCCeEE
Confidence 345999999999999999999999995 6789999998 7654111 110 01123455778999999987
No 31
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=83.53 E-value=0.22 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=0.0
Q ss_pred cccHHHHhhhcchhhhhhhcccC
Q 005730 481 DFDFIAMNEKFNKDEVWGHLGKS 503 (680)
Q Consensus 481 DFDFea~NeKFnKdEv~g~Lgkk 503 (680)
||||++.-++|+|..+|+++.+.
T Consensus 1 dfdf~~nl~~fdk~~vf~e~~~~ 23 (306)
T 3d3j_A 1 DFDFEGNLALFDKAAVFEEIDTY 23 (306)
T ss_dssp -----------------------
T ss_pred CcchhHHHHHhhhHHHHHHHhcc
Confidence 89999999999999999998765
No 32
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=76.43 E-value=2.5 Score=36.80 Aligned_cols=58 Identities=19% Similarity=0.387 Sum_probs=44.4
Q ss_pred ccccceeEE----EecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730 19 SYIGSLISL----TSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~IGs~ISL----ISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK 86 (680)
.|+++++.+ +.|.+.+|+|+|..+|. ---|.|+|+. +-+++. ....+.-++.||+.|.
T Consensus 23 ~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~-~mNlvL~d~~E~~~~~~---------~~~~lg~v~iRG~nV~ 85 (92)
T 3s6n_E 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDE-YMNLVLDDAEEIHSKTK---------SRKQLGRIMLKGDNIT 85 (92)
T ss_dssp HHHHHTCEEEEEESSSCSSEEEEEEEEECT-TCCEEEEEEEEECSSSC---------CEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEEEEecCCEEEEEEEEEEcC-cCcEEEeeeEEEecCCC---------ceeEcCeEEEeCCEEE
Confidence 577888554 45999999999999995 7789999988 653321 1335677999999998
No 33
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=74.73 E-value=5.4 Score=35.79 Aligned_cols=67 Identities=10% Similarity=0.228 Sum_probs=45.4
Q ss_pred ccc--cceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCC-CCCC---CCCCCcceeEEEEEcCccc
Q 005730 19 SYI--GSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEK-IGPQ---VPPSDKIYEYILFRGSDIK 86 (680)
Q Consensus 19 ~~I--Gs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~-~~~~---IPps~~vyeyIvFrgsDIK 86 (680)
.++ |++|.+.-+.+-.|+|+|..+| +.--|.|.||. +-++.-.. .+.+ .--.+..+..|+.||+.|.
T Consensus 34 ~~~~~~k~V~V~Lk~gr~~~G~L~~fD-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv 107 (118)
T 1b34_B 34 QSVKNNTQVLINCRNNKKLLGRVKAFD-RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVI 107 (118)
T ss_dssp HHHHHTCEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEC-------------------CEEEEEEEECGGGEE
T ss_pred HHhcCCcEEEEEECCCcEEEEEEEEeC-CceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEE
Confidence 456 5999999999999999999999 67889999998 65432110 0110 0011234788999999998
No 34
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=40.27 E-value=16 Score=30.74 Aligned_cols=42 Identities=14% Similarity=0.367 Sum_probs=32.1
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc--cccCCC
Q 005730 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR--LEQKGE 61 (680)
Q Consensus 18 ~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR--fGTEgR 61 (680)
+.+.|.||-|--.++..+.|||-..|- -+|-|+||. -|..|+
T Consensus 12 ~~WKg~rvAv~vg~ehSFtGiledFDe--EviLL~dV~D~~GNk~k 55 (71)
T 1ycy_A 12 KEWKGHKVAVSVGGDHSFTGTLEDFDE--EVILLKDVVDVIGNRGK 55 (71)
T ss_dssp HHHTTSEEEEEEC----CEEEEEEECS--SEEEEEEEEETTEEEEE
T ss_pred HHhCCcEEEEEecCcceeeeehhhcCc--ceeehhhHHHHhccccc
Confidence 357899999999999999999999886 689999999 665544
No 35
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=23.63 E-value=11 Score=32.76 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=36.6
Q ss_pred cccccccccCCCCCCcccccccchhhccccCCCCceeecCC
Q 005730 87 HCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSP 127 (680)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~v~~~~ 127 (680)
.|.-|+.||.-|.|.||+.-+-.+|+++-.+-....|.++|
T Consensus 12 e~gPT~vgD~~sDP~LM~~LgA~~~~~lgn~f~ey~v~dpP 52 (83)
T 1jg5_A 12 EVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPP 52 (83)
T ss_dssp TSCCEEEECTTSCHHHHHHTTCEEECCTTCSSCEEEESSCH
T ss_pred ccCCccccCccCCHHHHHHhccceehhhccccEEEEcCCCh
Confidence 46789999999999999999999999999998888887654
No 36
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=22.32 E-value=59 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=31.7
Q ss_pred ccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccC
Q 005730 21 IGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQK 59 (680)
Q Consensus 21 IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTE 59 (680)
.|.++.+++=.---++|++..||.+...+.+. |. ||.|
T Consensus 7 ~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~-v~~~Gr~ 45 (58)
T 1nz9_A 7 EGDQVRVVSGPFADFTGTVTEINPERGKVKVM-VTIFGRE 45 (58)
T ss_dssp TTCEEEECSGGGTTCEEEEEEEETTTTEEEEE-EESSSSE
T ss_pred CCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE-EEeCCCE
Confidence 68888888888778999999999998888775 77 8854
Done!