BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005732
         (680 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 35.0 bits (79), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 486 LFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG 545
           +F+ M+   +VPN ATF       V          + + MK++G+ P L  Y   +    
Sbjct: 92  IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151

Query: 546 RSGHLHEAEE 555
           R G   +A E
Sbjct: 152 RKGDADKAYE 161


>pdb|3L46|A Chain A, Crystal Structure Of The Second Brct Domain Of Epithelial
           Cell Transforming 2 (Ect2)
 pdb|3L46|B Chain B, Crystal Structure Of The Second Brct Domain Of Epithelial
           Cell Transforming 2 (Ect2)
          Length = 112

 Score = 33.1 bits (74), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 546 RSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597
           R  HL   E  +KD+P E    ++  ++   WFW ++++  RA + M+  +K
Sbjct: 58  RCTHLVVEENIVKDLPFEPSKKLY--VVKQEWFWGSIQMDARAGETMYLYEK 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,205,152
Number of Sequences: 62578
Number of extensions: 763053
Number of successful extensions: 1653
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 3
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)