Query 005732
Match_columns 680
No_of_seqs 604 out of 3678
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 12:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-90 3E-95 768.7 69.3 637 14-675 117-766 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.3E-74 2.8E-79 625.9 62.0 517 47-675 85-603 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1E-70 2.2E-75 610.2 58.9 586 15-631 83-688 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-64 2.9E-69 548.3 53.6 525 14-567 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-62 4.8E-67 531.0 59.0 499 119-635 370-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.9E-56 4.1E-61 484.3 46.2 462 16-533 85-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-36 4.8E-41 345.1 64.9 580 23-627 300-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-35 7.1E-40 335.5 65.5 593 13-631 222-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.9E-26 4.1E-31 262.6 64.0 594 15-628 59-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.3E-27 9.2E-32 267.9 56.6 584 21-631 31-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.1E-23 9E-28 224.1 59.8 606 8-636 68-747 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 9.1E-24 2E-28 202.7 35.5 446 154-623 52-513 (966)
13 PRK09782 bacteriophage N4 rece 99.9 2.4E-21 5.2E-26 210.5 57.8 292 320-630 381-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 9.3E-23 2E-27 195.8 28.9 423 184-631 51-487 (966)
15 KOG2002 TPR-containing nuclear 99.9 9.6E-19 2.1E-23 177.6 43.9 547 64-632 145-748 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-19 1E-23 189.9 43.3 420 185-629 131-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.8E-25 189.2 30.8 298 322-637 42-355 (389)
18 KOG2002 TPR-containing nuclear 99.9 9.8E-18 2.1E-22 170.4 44.0 581 34-631 146-800 (1018)
19 PRK10049 pgaA outer membrane p 99.9 3.4E-18 7.4E-23 186.5 42.2 391 188-631 22-458 (765)
20 PRK15174 Vi polysaccharide exp 99.9 2.5E-18 5.4E-23 183.4 36.5 332 217-599 41-385 (656)
21 TIGR00990 3a0801s09 mitochondr 99.9 3E-17 6.4E-22 176.1 44.6 427 153-601 130-577 (615)
22 PRK15174 Vi polysaccharide exp 99.9 6E-18 1.3E-22 180.5 38.4 348 265-632 17-384 (656)
23 PRK11788 tetratricopeptide rep 99.8 2.4E-18 5.3E-23 175.3 30.1 294 192-535 46-354 (389)
24 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.4E-21 174.8 43.8 410 149-602 14-463 (765)
25 PRK14574 hmsH outer membrane p 99.8 8E-16 1.7E-20 164.3 44.9 427 156-601 40-519 (822)
26 PRK14574 hmsH outer membrane p 99.8 2.1E-15 4.5E-20 161.2 45.1 431 123-568 38-519 (822)
27 KOG2076 RNA polymerase III tra 99.8 4E-14 8.7E-19 143.6 47.7 607 18-632 139-852 (895)
28 KOG0495 HAT repeat protein [RN 99.8 2.4E-12 5.2E-17 125.9 53.5 518 101-649 363-898 (913)
29 KOG4422 Uncharacterized conser 99.8 3.4E-14 7.3E-19 131.7 36.0 450 49-560 116-587 (625)
30 KOG4422 Uncharacterized conser 99.7 4.5E-14 9.7E-19 130.9 33.5 358 46-494 204-591 (625)
31 KOG2003 TPR repeat-containing 99.7 1.4E-14 3E-19 135.1 30.2 202 411-616 503-710 (840)
32 KOG2076 RNA polymerase III tra 99.7 8.5E-13 1.8E-17 134.2 44.8 535 59-610 149-784 (895)
33 KOG4318 Bicoid mRNA stability 99.7 1.9E-12 4E-17 131.0 40.7 600 9-632 16-811 (1088)
34 KOG0495 HAT repeat protein [RN 99.7 4.8E-11 1E-15 117.0 47.1 409 198-632 422-849 (913)
35 PF13429 TPR_15: Tetratricopep 99.6 7.7E-16 1.7E-20 148.2 10.3 258 368-628 13-276 (280)
36 KOG2003 TPR repeat-containing 99.6 1.2E-12 2.5E-17 122.4 27.5 434 189-629 209-689 (840)
37 KOG0547 Translocase of outer m 99.6 1.9E-12 4.2E-17 122.4 28.8 410 185-628 119-565 (606)
38 PRK10747 putative protoheme IX 99.6 1.4E-12 3.1E-17 131.3 28.8 277 328-628 97-389 (398)
39 KOG1155 Anaphase-promoting com 99.6 1.9E-11 4.1E-16 115.1 31.0 289 322-629 234-536 (559)
40 KOG1173 Anaphase-promoting com 99.6 3.7E-11 8.1E-16 116.1 33.4 441 180-630 15-519 (611)
41 TIGR00540 hemY_coli hemY prote 99.6 6.2E-12 1.3E-16 127.5 30.2 285 326-628 95-398 (409)
42 PRK10747 putative protoheme IX 99.5 5.3E-12 1.2E-16 127.2 28.0 255 295-596 129-391 (398)
43 KOG1155 Anaphase-promoting com 99.5 4.3E-11 9.4E-16 112.7 31.5 356 149-558 163-531 (559)
44 KOG1915 Cell cycle control pro 99.5 7.8E-10 1.7E-14 104.6 38.8 144 130-280 84-234 (677)
45 KOG1915 Cell cycle control pro 99.5 6.1E-11 1.3E-15 111.9 31.4 426 229-679 84-546 (677)
46 KOG1126 DNA-binding cell divis 99.5 2E-12 4.4E-17 127.5 21.1 280 330-631 334-622 (638)
47 KOG1126 DNA-binding cell divis 99.5 1.3E-12 2.9E-17 128.7 19.6 247 377-630 333-587 (638)
48 KOG2047 mRNA splicing factor [ 99.5 1.5E-08 3.2E-13 99.8 46.6 586 9-622 18-716 (835)
49 TIGR00540 hemY_coli hemY prote 99.5 6.5E-11 1.4E-15 120.1 32.2 221 370-594 160-398 (409)
50 PF13429 TPR_15: Tetratricopep 99.5 8.1E-14 1.8E-18 134.2 9.6 250 188-456 15-271 (280)
51 KOG1173 Anaphase-promoting com 99.5 8.1E-11 1.8E-15 113.9 29.5 500 15-575 13-531 (611)
52 KOG3785 Uncharacterized conser 99.5 2E-10 4.3E-15 104.5 29.9 442 181-674 91-554 (557)
53 KOG4318 Bicoid mRNA stability 99.5 2.3E-10 4.9E-15 116.3 33.4 508 46-592 22-591 (1088)
54 KOG0547 Translocase of outer m 99.5 2E-10 4.2E-15 109.1 30.8 424 153-598 118-569 (606)
55 COG2956 Predicted N-acetylgluc 99.5 3.2E-11 6.9E-16 108.4 23.3 293 328-636 48-354 (389)
56 COG3071 HemY Uncharacterized e 99.5 1.7E-10 3.8E-15 107.2 27.7 281 327-628 96-389 (400)
57 KOG2047 mRNA splicing factor [ 99.4 2.4E-08 5.1E-13 98.4 43.4 508 19-550 103-710 (835)
58 COG3071 HemY Uncharacterized e 99.4 3.2E-10 6.9E-15 105.4 27.5 276 194-491 97-388 (400)
59 COG2956 Predicted N-acetylgluc 99.4 1.4E-10 2.9E-15 104.4 22.8 226 183-426 38-277 (389)
60 KOG4162 Predicted calmodulin-b 99.4 7.9E-09 1.7E-13 104.1 36.6 505 61-630 239-784 (799)
61 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.4E-15 108.8 23.0 198 431-629 29-232 (234)
62 KOG0985 Vesicle coat protein c 99.4 7.4E-08 1.6E-12 99.6 41.6 372 223-627 843-1247(1666)
63 KOG1129 TPR repeat-containing 99.4 4E-11 8.7E-16 107.7 16.2 222 406-631 231-460 (478)
64 KOG1174 Anaphase-promoting com 99.3 3.3E-08 7.1E-13 92.3 34.4 269 313-600 230-505 (564)
65 KOG3785 Uncharacterized conser 99.3 3.9E-08 8.4E-13 89.9 33.0 121 411-537 372-497 (557)
66 PRK12370 invasion protein regu 99.3 2E-09 4.3E-14 113.6 28.2 263 360-630 253-536 (553)
67 KOG1156 N-terminal acetyltrans 99.3 3.2E-07 7E-12 91.0 40.4 88 470-560 377-465 (700)
68 KOG3616 Selective LIM binding 99.3 3.9E-07 8.6E-12 91.2 39.9 267 322-634 739-1029(1636)
69 KOG2376 Signal recognition par 99.3 1.1E-07 2.3E-12 93.2 35.2 465 91-623 19-514 (652)
70 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 82.4 6.3 50 47-96 1-50 (50)
71 KOG1129 TPR repeat-containing 99.3 1.7E-10 3.6E-15 103.8 14.3 236 367-606 227-469 (478)
72 KOG1156 N-terminal acetyltrans 99.2 1.2E-07 2.5E-12 94.0 33.3 434 183-643 10-487 (700)
73 KOG1840 Kinesin light chain [C 99.2 3.9E-09 8.5E-14 105.8 23.6 230 399-628 200-478 (508)
74 COG3063 PilF Tfp pilus assembl 99.2 1.9E-09 4.1E-14 92.8 18.2 163 466-631 37-204 (250)
75 PRK12370 invasion protein regu 99.2 2.2E-09 4.8E-14 113.3 23.1 212 412-629 275-502 (553)
76 KOG3617 WD40 and TPR repeat-co 99.2 2.5E-06 5.5E-11 86.8 42.3 358 5-425 712-1107(1416)
77 PF12569 NARP1: NMDA receptor- 99.2 6.4E-08 1.4E-12 98.5 32.0 50 576-625 466-516 (517)
78 KOG1174 Anaphase-promoting com 99.2 2.4E-07 5.2E-12 86.7 32.4 294 217-529 193-501 (564)
79 TIGR02521 type_IV_pilW type IV 99.2 7.2E-09 1.6E-13 97.4 23.4 199 364-596 32-233 (234)
80 KOG2376 Signal recognition par 99.2 1.3E-07 2.8E-12 92.6 31.7 448 23-526 17-518 (652)
81 PF13041 PPR_2: PPR repeat fam 99.2 8.7E-11 1.9E-15 78.5 6.8 50 462-511 1-50 (50)
82 PRK11189 lipoprotein NlpI; Pro 99.2 2.6E-09 5.6E-14 102.9 19.7 230 374-610 37-281 (296)
83 KOG0548 Molecular co-chaperone 99.2 1.2E-07 2.7E-12 91.9 30.4 100 160-263 12-114 (539)
84 KOG3616 Selective LIM binding 99.2 1.3E-06 2.8E-11 87.7 37.2 195 223-458 737-933 (1636)
85 PF12569 NARP1: NMDA receptor- 99.1 1.1E-07 2.3E-12 96.9 30.2 280 294-595 14-334 (517)
86 PF04733 Coatomer_E: Coatomer 99.1 1.1E-08 2.3E-13 96.9 20.9 227 363-629 35-265 (290)
87 KOG0985 Vesicle coat protein c 99.1 1.6E-05 3.4E-10 83.1 44.3 557 12-622 718-1376(1666)
88 PRK11189 lipoprotein NlpI; Pro 99.1 2.8E-08 6.1E-13 95.8 24.1 213 412-632 40-268 (296)
89 KOG0624 dsRNA-activated protei 99.1 9.8E-08 2.1E-12 87.0 25.2 193 405-600 162-375 (504)
90 KOG1125 TPR repeat-containing 99.1 4.9E-09 1.1E-13 102.3 17.9 246 410-674 297-556 (579)
91 KOG1127 TPR repeat-containing 99.1 8E-07 1.7E-11 92.4 33.9 304 301-625 800-1134(1238)
92 KOG4162 Predicted calmodulin-b 99.1 2.2E-07 4.7E-12 94.0 27.3 393 217-633 322-753 (799)
93 KOG1127 TPR repeat-containing 99.0 3.2E-06 6.9E-11 88.1 35.4 562 34-628 474-1103(1238)
94 COG3063 PilF Tfp pilus assembl 99.0 1E-07 2.3E-12 82.3 20.8 167 432-599 68-240 (250)
95 KOG3617 WD40 and TPR repeat-co 99.0 2.2E-06 4.7E-11 87.3 32.3 316 118-490 725-1106(1416)
96 KOG1840 Kinesin light chain [C 99.0 6.4E-08 1.4E-12 97.2 21.8 233 362-594 198-478 (508)
97 KOG0548 Molecular co-chaperone 99.0 2.8E-06 6.1E-11 82.8 31.0 177 439-625 304-485 (539)
98 KOG4340 Uncharacterized conser 99.0 1.1E-06 2.3E-11 78.8 25.5 410 184-629 13-443 (459)
99 cd05804 StaR_like StaR_like; a 98.9 1.4E-06 3E-11 87.6 28.3 59 572-630 270-337 (355)
100 KOG4340 Uncharacterized conser 98.9 4.7E-07 1E-11 81.0 20.6 287 318-625 13-335 (459)
101 cd05804 StaR_like StaR_like; a 98.9 6.2E-06 1.4E-10 82.9 30.9 291 285-593 7-334 (355)
102 PRK04841 transcriptional regul 98.8 8.4E-06 1.8E-10 93.2 34.4 365 259-630 347-761 (903)
103 TIGR03302 OM_YfiO outer membra 98.8 4E-07 8.6E-12 85.3 18.5 182 431-630 31-233 (235)
104 PRK10370 formate-dependent nit 98.8 5.4E-07 1.2E-11 80.6 17.7 148 471-631 23-175 (198)
105 KOG0624 dsRNA-activated protei 98.8 6.3E-06 1.4E-10 75.5 23.9 307 255-565 40-373 (504)
106 KOG1125 TPR repeat-containing 98.7 3.4E-06 7.3E-11 83.0 21.1 220 289-526 290-525 (579)
107 PRK15359 type III secretion sy 98.7 6.3E-07 1.4E-11 75.8 13.9 93 537-629 27-121 (144)
108 PRK15359 type III secretion sy 98.7 7E-07 1.5E-11 75.5 13.8 124 484-612 13-138 (144)
109 PLN02789 farnesyltranstransfer 98.6 1E-05 2.3E-10 77.8 22.7 212 413-627 52-300 (320)
110 PRK04841 transcriptional regul 98.6 0.00012 2.7E-09 83.7 33.5 325 262-599 383-764 (903)
111 KOG1914 mRNA cleavage and poly 98.6 0.00095 2.1E-08 65.7 36.8 147 379-526 347-499 (656)
112 PF04733 Coatomer_E: Coatomer 98.6 7.3E-06 1.6E-10 77.9 19.4 147 323-492 110-264 (290)
113 KOG1070 rRNA processing protei 98.6 5.8E-06 1.3E-10 89.2 20.3 200 430-632 1455-1666(1710)
114 KOG1128 Uncharacterized conser 98.6 1.9E-05 4.1E-10 80.0 22.5 235 281-544 395-633 (777)
115 KOG3081 Vesicle coat complex C 98.6 3.7E-05 8.1E-10 68.3 21.7 152 440-627 115-269 (299)
116 COG5010 TadD Flp pilus assembl 98.5 1.4E-05 3.1E-10 71.0 18.0 156 468-625 70-227 (257)
117 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.4E-12 56.7 2.7 33 13-45 2-34 (34)
118 PRK15363 pathogenicity island 98.5 2.4E-06 5.1E-11 70.6 11.2 95 535-629 36-132 (157)
119 COG5010 TadD Flp pilus assembl 98.5 1.3E-05 2.9E-10 71.2 16.5 135 496-631 63-199 (257)
120 KOG1128 Uncharacterized conser 98.5 7.2E-06 1.6E-10 82.9 16.6 187 430-630 395-583 (777)
121 PRK15179 Vi polysaccharide bio 98.4 2.9E-05 6.2E-10 82.7 21.3 139 463-604 85-226 (694)
122 PRK10370 formate-dependent nit 98.4 4.8E-05 1E-09 68.2 18.9 154 440-603 23-181 (198)
123 TIGR02552 LcrH_SycD type III s 98.4 5.4E-06 1.2E-10 69.9 12.0 95 535-629 18-114 (135)
124 PRK14720 transcript cleavage f 98.4 8.8E-05 1.9E-09 79.8 23.4 44 568-611 225-268 (906)
125 PRK15179 Vi polysaccharide bio 98.4 7.4E-05 1.6E-09 79.7 22.4 143 428-573 81-229 (694)
126 PF12854 PPR_1: PPR repeat 98.4 7.6E-07 1.6E-11 53.1 4.4 32 529-560 2-33 (34)
127 COG4783 Putative Zn-dependent 98.3 0.00026 5.7E-09 68.9 23.4 147 324-502 315-462 (484)
128 PLN02789 farnesyltranstransfer 98.3 8.1E-05 1.8E-09 71.8 20.3 188 442-631 46-252 (320)
129 TIGR03302 OM_YfiO outer membra 98.3 0.0001 2.2E-09 69.0 20.0 57 470-526 172-230 (235)
130 KOG1070 rRNA processing protei 98.3 0.00018 3.9E-09 78.3 22.6 196 287-498 1461-1668(1710)
131 KOG0553 TPR repeat-containing 98.3 1.1E-05 2.4E-10 73.2 11.3 91 509-600 91-183 (304)
132 COG4783 Putative Zn-dependent 98.2 0.00061 1.3E-08 66.4 23.4 141 469-630 311-455 (484)
133 KOG1914 mRNA cleavage and poly 98.2 0.0066 1.4E-07 60.0 33.6 162 464-627 366-537 (656)
134 PRK14720 transcript cleavage f 98.2 0.0005 1.1E-08 74.3 25.1 242 211-509 24-267 (906)
135 KOG3081 Vesicle coat complex C 98.2 0.00022 4.7E-09 63.6 18.5 189 437-631 45-238 (299)
136 TIGR02552 LcrH_SycD type III s 98.2 5.4E-05 1.2E-09 63.7 13.9 114 486-602 5-121 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.2E-05 9.1E-10 75.1 14.3 121 503-627 173-295 (395)
138 PF07079 DUF1347: Protein of u 98.2 0.0085 1.8E-07 58.0 31.9 116 28-147 16-156 (549)
139 KOG3060 Uncharacterized conser 98.1 0.00013 2.8E-09 64.5 14.8 189 412-602 26-227 (289)
140 PF13414 TPR_11: TPR repeat; P 98.1 6.2E-06 1.3E-10 59.7 5.4 65 565-629 2-67 (69)
141 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.7E-05 1E-09 62.4 10.9 94 537-630 5-106 (119)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00031 6.8E-09 59.7 15.8 125 467-592 15-144 (145)
143 PF12895 Apc3: Anaphase-promot 98.1 4.2E-06 9.2E-11 63.3 3.9 78 547-625 2-83 (84)
144 PLN03088 SGT1, suppressor of 98.0 7.4E-05 1.6E-09 74.0 13.5 103 506-609 9-113 (356)
145 PF13432 TPR_16: Tetratricopep 98.0 1.2E-05 2.6E-10 57.3 5.7 59 572-630 3-61 (65)
146 cd00189 TPR Tetratricopeptide 98.0 5.9E-05 1.3E-09 58.8 10.2 94 537-630 3-98 (100)
147 TIGR00756 PPR pentatricopeptid 98.0 8.4E-06 1.8E-10 49.6 3.9 35 50-84 1-35 (35)
148 PF13812 PPR_3: Pentatricopept 98.0 9.4E-06 2E-10 48.9 4.0 33 50-82 2-34 (34)
149 KOG3060 Uncharacterized conser 98.0 0.00048 1.1E-08 61.0 15.9 188 446-636 25-227 (289)
150 KOG0550 Molecular chaperone (D 98.0 0.00011 2.3E-09 69.7 12.3 162 442-627 178-348 (486)
151 PF09976 TPR_21: Tetratricopep 97.9 0.0003 6.4E-09 59.8 13.6 125 500-626 13-144 (145)
152 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00033 7.1E-09 69.0 15.4 125 436-562 172-296 (395)
153 COG3898 Uncharacterized membra 97.9 0.016 3.5E-07 54.9 25.2 252 372-638 129-399 (531)
154 COG4235 Cytochrome c biogenesi 97.9 0.00013 2.9E-09 66.8 11.7 108 531-638 153-265 (287)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00016 3.6E-09 59.1 11.4 103 501-603 4-113 (119)
156 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.9E-10 47.6 4.3 34 365-398 2-35 (35)
157 KOG2053 Mitochondrial inherita 97.9 0.059 1.3E-06 57.0 40.6 130 60-194 20-157 (932)
158 KOG2053 Mitochondrial inherita 97.9 0.06 1.3E-06 57.0 42.9 158 400-561 438-606 (932)
159 COG4700 Uncharacterized protei 97.8 0.0016 3.6E-08 54.7 15.5 134 495-629 85-222 (251)
160 PF13812 PPR_3: Pentatricopept 97.8 3.2E-05 7E-10 46.5 4.3 33 364-396 2-34 (34)
161 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.04 8.7E-07 53.4 31.1 144 363-510 397-546 (660)
162 PRK02603 photosystem I assembl 97.8 0.00026 5.6E-09 62.3 11.0 94 536-629 37-149 (172)
163 PF14938 SNAP: Soluble NSF att 97.8 0.025 5.5E-07 54.3 24.9 106 466-572 157-274 (282)
164 KOG0553 TPR repeat-containing 97.7 0.00036 7.9E-09 63.6 11.0 99 472-573 89-189 (304)
165 PF07079 DUF1347: Protein of u 97.7 0.054 1.2E-06 52.7 33.1 238 383-626 245-521 (549)
166 PF14559 TPR_19: Tetratricopep 97.7 3.7E-05 8E-10 55.4 3.8 53 577-629 2-54 (68)
167 PF13371 TPR_9: Tetratricopept 97.7 0.0001 2.2E-09 54.0 6.2 58 574-631 3-60 (73)
168 PLN03088 SGT1, suppressor of 97.7 0.00072 1.6E-08 67.0 13.8 102 470-573 8-110 (356)
169 CHL00033 ycf3 photosystem I as 97.7 0.00039 8.5E-09 60.9 10.5 93 534-626 35-139 (168)
170 PRK10153 DNA-binding transcrip 97.7 0.0024 5.2E-08 66.2 17.6 137 462-600 335-487 (517)
171 PRK02603 photosystem I assembl 97.7 0.0018 3.9E-08 56.9 14.3 129 464-614 35-165 (172)
172 PF01535 PPR: PPR repeat; Int 97.6 7.3E-05 1.6E-09 43.7 3.4 31 50-80 1-31 (31)
173 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.5E-09 54.6 5.9 79 513-591 3-83 (84)
174 PRK15331 chaperone protein Sic 97.6 0.0019 4E-08 54.1 12.0 87 542-628 45-133 (165)
175 PF13432 TPR_16: Tetratricopep 97.6 0.0002 4.3E-09 51.0 5.5 61 540-600 3-65 (65)
176 PF14938 SNAP: Soluble NSF att 97.5 0.0083 1.8E-07 57.6 18.1 26 365-390 37-62 (282)
177 cd00189 TPR Tetratricopeptide 97.5 0.0013 2.9E-08 50.9 10.7 89 508-597 9-99 (100)
178 KOG0550 Molecular chaperone (D 97.5 0.055 1.2E-06 52.0 22.1 83 443-527 259-349 (486)
179 PRK10803 tol-pal system protei 97.5 0.00073 1.6E-08 63.1 9.9 93 537-629 146-246 (263)
180 CHL00033 ycf3 photosystem I as 97.5 0.004 8.7E-08 54.5 13.7 61 466-526 37-99 (168)
181 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.7E-09 42.1 3.4 30 365-394 2-31 (31)
182 PRK10153 DNA-binding transcrip 97.4 0.006 1.3E-07 63.3 16.7 137 494-632 332-485 (517)
183 PRK10866 outer membrane biogen 97.4 0.018 3.9E-07 53.5 18.2 174 438-627 37-239 (243)
184 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0007 1.5E-08 66.3 8.9 67 563-629 72-141 (453)
185 PF14559 TPR_19: Tetratricopep 97.4 0.00024 5.2E-09 51.1 4.2 61 546-606 3-65 (68)
186 PF13431 TPR_17: Tetratricopep 97.4 0.0001 2.2E-09 43.9 1.8 33 589-621 2-34 (34)
187 PF05843 Suf: Suppressor of fo 97.4 0.0075 1.6E-07 57.6 15.4 133 465-599 2-140 (280)
188 PF08579 RPM2: Mitochondrial r 97.4 0.0028 6.1E-08 48.7 9.7 81 51-131 27-116 (120)
189 PF10037 MRP-S27: Mitochondria 97.3 0.0021 4.6E-08 63.7 11.5 118 393-510 61-184 (429)
190 PF12688 TPR_5: Tetratrico pep 97.3 0.0043 9.4E-08 49.8 10.9 86 542-627 9-102 (120)
191 KOG2041 WD40 repeat protein [G 97.3 0.22 4.7E-06 51.3 24.4 217 250-492 689-951 (1189)
192 PF13414 TPR_11: TPR repeat; P 97.3 0.00064 1.4E-08 49.0 5.3 65 533-597 2-69 (69)
193 KOG0543 FKBP-type peptidyl-pro 97.2 0.0022 4.8E-08 61.4 9.9 64 566-629 257-320 (397)
194 PRK15363 pathogenicity island 97.2 0.0059 1.3E-07 50.9 11.2 91 288-392 39-132 (157)
195 PRK10866 outer membrane biogen 97.2 0.053 1.1E-06 50.4 18.9 56 470-525 181-238 (243)
196 KOG2796 Uncharacterized conser 97.2 0.017 3.7E-07 51.7 14.5 132 468-599 181-319 (366)
197 PF10037 MRP-S27: Mitochondria 97.2 0.0067 1.4E-07 60.3 13.5 70 468-537 107-176 (429)
198 KOG2796 Uncharacterized conser 97.2 0.035 7.7E-07 49.8 15.8 169 152-322 138-326 (366)
199 COG4700 Uncharacterized protei 97.2 0.056 1.2E-06 45.9 16.1 120 431-554 87-213 (251)
200 PF13428 TPR_14: Tetratricopep 97.1 0.00066 1.4E-08 43.5 3.8 42 567-608 2-43 (44)
201 PF04840 Vps16_C: Vps16, C-ter 97.1 0.3 6.4E-06 47.3 27.2 106 439-560 183-288 (319)
202 PF08579 RPM2: Mitochondrial r 97.1 0.0086 1.9E-07 46.2 9.9 78 469-546 30-116 (120)
203 PF05843 Suf: Suppressor of fo 97.1 0.0067 1.5E-07 57.9 11.7 129 500-629 2-136 (280)
204 PF06239 ECSIT: Evolutionarily 97.1 0.0039 8.4E-08 54.5 8.9 101 34-134 30-153 (228)
205 PF12688 TPR_5: Tetratrico pep 97.0 0.016 3.4E-07 46.6 11.6 91 369-459 7-101 (120)
206 PF13371 TPR_9: Tetratricopept 97.0 0.0021 4.5E-08 46.9 6.2 64 542-605 3-68 (73)
207 PRK10803 tol-pal system protei 97.0 0.019 4.2E-07 53.7 13.7 100 501-600 145-251 (263)
208 KOG2041 WD40 repeat protein [G 97.0 0.57 1.2E-05 48.4 28.9 54 360-422 849-902 (1189)
209 KOG1130 Predicted G-alpha GTPa 97.0 0.0064 1.4E-07 57.9 10.0 258 371-628 25-343 (639)
210 PF13281 DUF4071: Domain of un 97.0 0.099 2.1E-06 51.0 18.2 37 563-599 302-338 (374)
211 COG3898 Uncharacterized membra 96.9 0.41 8.9E-06 45.9 27.4 251 296-598 132-395 (531)
212 KOG4234 TPR repeat-containing 96.9 0.015 3.3E-07 49.8 10.6 88 542-629 103-197 (271)
213 KOG1130 Predicted G-alpha GTPa 96.9 0.0057 1.2E-07 58.2 8.9 50 190-242 26-79 (639)
214 PF13424 TPR_12: Tetratricopep 96.9 0.0013 2.8E-08 48.8 3.9 63 566-628 5-74 (78)
215 PF13512 TPR_18: Tetratricopep 96.9 0.031 6.7E-07 45.8 11.8 89 541-629 17-128 (142)
216 PF13525 YfiO: Outer membrane 96.9 0.023 5E-07 51.4 12.6 166 440-621 12-199 (203)
217 KOG1538 Uncharacterized conser 96.8 0.088 1.9E-06 53.5 16.6 100 217-343 746-845 (1081)
218 PRK11906 transcriptional regul 96.7 0.089 1.9E-06 52.1 16.1 145 480-625 274-432 (458)
219 KOG2114 Vacuolar assembly/sort 96.7 0.79 1.7E-05 48.7 23.0 174 21-208 337-516 (933)
220 KOG0543 FKBP-type peptidyl-pro 96.7 0.025 5.5E-07 54.4 11.7 139 471-630 215-356 (397)
221 PF06239 ECSIT: Evolutionarily 96.7 0.022 4.7E-07 50.0 10.2 88 461-548 44-152 (228)
222 COG1729 Uncharacterized protei 96.6 0.012 2.6E-07 53.7 8.8 83 546-630 153-245 (262)
223 PF03704 BTAD: Bacterial trans 96.6 0.037 8E-07 47.0 11.7 61 568-628 64-124 (146)
224 PF04840 Vps16_C: Vps16, C-ter 96.6 0.77 1.7E-05 44.5 27.1 79 260-340 184-262 (319)
225 KOG1538 Uncharacterized conser 96.6 0.15 3.3E-06 51.9 16.7 55 366-423 601-657 (1081)
226 PF13525 YfiO: Outer membrane 96.6 0.053 1.1E-06 49.1 12.9 142 469-629 10-170 (203)
227 KOG2280 Vacuolar assembly/sort 96.5 1.3 2.9E-05 46.4 28.0 339 247-625 426-795 (829)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.92 2E-05 44.5 28.7 136 462-599 395-535 (660)
229 COG4105 ComL DNA uptake lipopr 96.5 0.62 1.3E-05 42.4 19.0 174 443-629 44-233 (254)
230 COG4235 Cytochrome c biogenesi 96.4 0.16 3.5E-06 47.1 15.0 101 498-599 155-260 (287)
231 COG0457 NrfG FOG: TPR repeat [ 96.3 0.93 2E-05 42.0 26.6 197 433-630 59-266 (291)
232 PRK11906 transcriptional regul 96.3 0.075 1.6E-06 52.6 12.6 119 514-632 273-404 (458)
233 KOG1258 mRNA processing protei 96.3 1.7 3.7E-05 44.6 30.9 408 180-614 44-489 (577)
234 PF13424 TPR_12: Tetratricopep 96.2 0.0067 1.4E-07 44.9 4.2 60 536-595 7-75 (78)
235 KOG4555 TPR repeat-containing 96.2 0.049 1.1E-06 43.1 8.7 90 542-631 51-146 (175)
236 COG3118 Thioredoxin domain-con 96.2 0.075 1.6E-06 49.0 11.3 156 508-669 143-302 (304)
237 KOG2280 Vacuolar assembly/sort 96.1 2.3 5.1E-05 44.7 27.2 120 125-245 443-573 (829)
238 COG3118 Thioredoxin domain-con 96.0 0.85 1.8E-05 42.4 17.0 153 472-625 142-297 (304)
239 PF09205 DUF1955: Domain of un 96.0 0.22 4.9E-06 39.7 11.3 140 475-632 13-152 (161)
240 PF03704 BTAD: Bacterial trans 95.9 0.14 3.1E-06 43.4 11.6 71 466-537 64-139 (146)
241 KOG1585 Protein required for f 95.9 0.73 1.6E-05 41.3 15.3 83 540-623 156-250 (308)
242 PF13281 DUF4071: Domain of un 95.7 1.2 2.6E-05 43.7 17.6 84 315-408 141-227 (374)
243 COG1729 Uncharacterized protei 95.7 0.35 7.7E-06 44.4 13.1 102 501-603 144-252 (262)
244 PF10300 DUF3808: Protein of u 95.7 3.2 6.9E-05 43.1 21.9 118 297-425 246-374 (468)
245 PF07719 TPR_2: Tetratricopept 95.5 0.032 6.8E-07 33.1 4.3 33 567-599 2-34 (34)
246 KOG3941 Intermediate in Toll s 95.5 0.1 2.3E-06 47.4 9.0 110 37-146 53-186 (406)
247 COG0457 NrfG FOG: TPR repeat [ 95.5 2.1 4.5E-05 39.5 25.6 221 376-598 36-268 (291)
248 PF00515 TPR_1: Tetratricopept 95.4 0.029 6.2E-07 33.3 3.6 32 567-598 2-33 (34)
249 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.77 1.7E-05 45.8 15.1 62 431-492 73-140 (453)
250 PF09205 DUF1955: Domain of un 95.3 0.36 7.8E-06 38.6 10.3 62 366-428 89-150 (161)
251 PRK11619 lytic murein transgly 95.2 5.5 0.00012 43.1 31.8 229 198-452 257-495 (644)
252 PF08631 SPO22: Meiosis protei 95.2 3 6.6E-05 39.9 21.2 62 317-392 86-150 (278)
253 KOG2610 Uncharacterized conser 95.2 0.65 1.4E-05 43.6 13.1 113 446-560 116-235 (491)
254 smart00299 CLH Clathrin heavy 95.1 1.6 3.6E-05 36.5 14.9 125 468-611 11-136 (140)
255 PF04053 Coatomer_WDAD: Coatom 95.1 0.8 1.7E-05 46.7 15.0 77 255-341 297-373 (443)
256 PF12921 ATP13: Mitochondrial 95.1 0.37 8E-06 39.2 10.3 47 495-541 48-95 (126)
257 KOG0890 Protein kinase of the 95.1 9.3 0.0002 46.3 24.6 311 289-631 1388-1733(2382)
258 PRK15331 chaperone protein Sic 95.0 0.69 1.5E-05 39.1 11.9 85 474-560 47-131 (165)
259 COG4105 ComL DNA uptake lipopr 95.0 2.4 5.3E-05 38.7 16.1 76 322-408 41-116 (254)
260 PRK11619 lytic murein transgly 94.9 6.8 0.00015 42.4 33.1 77 550-626 295-372 (644)
261 PF04184 ST7: ST7 protein; In 94.9 0.54 1.2E-05 46.9 12.6 153 471-634 175-329 (539)
262 PF10300 DUF3808: Protein of u 94.8 1.8 3.9E-05 44.9 17.2 159 366-526 191-374 (468)
263 PF13512 TPR_18: Tetratricopep 94.8 2 4.2E-05 35.5 13.8 114 472-600 18-133 (142)
264 KOG4555 TPR repeat-containing 94.6 0.12 2.5E-06 41.1 5.8 57 573-629 50-106 (175)
265 PF12921 ATP13: Mitochondrial 94.5 0.42 9.1E-06 38.9 9.3 79 362-440 1-95 (126)
266 smart00299 CLH Clathrin heavy 94.3 2.4 5.2E-05 35.5 14.2 84 319-423 11-94 (140)
267 KOG1941 Acetylcholine receptor 94.2 0.42 9.1E-06 45.3 9.6 224 373-596 16-276 (518)
268 PF07035 Mic1: Colon cancer-as 94.1 2.7 5.9E-05 36.0 13.7 121 70-196 15-135 (167)
269 KOG1941 Acetylcholine receptor 94.1 1.9 4.2E-05 41.1 13.7 196 365-560 45-272 (518)
270 PF04053 Coatomer_WDAD: Coatom 94.1 2.9 6.2E-05 42.8 16.3 162 371-562 269-430 (443)
271 PF02259 FAT: FAT domain; Int 94.0 6.5 0.00014 39.2 19.1 150 462-613 144-305 (352)
272 PRK10941 hypothetical protein; 94.0 0.5 1.1E-05 44.3 9.9 84 568-674 183-266 (269)
273 KOG1585 Protein required for f 93.9 4.8 0.0001 36.4 15.7 204 364-590 32-251 (308)
274 KOG4648 Uncharacterized conser 93.8 0.12 2.6E-06 48.3 5.3 113 505-622 103-217 (536)
275 PRK09687 putative lyase; Provi 93.8 6.5 0.00014 37.5 24.1 81 15-97 34-118 (280)
276 PF13428 TPR_14: Tetratricopep 93.5 0.13 2.9E-06 32.7 3.8 32 600-631 1-32 (44)
277 PF13176 TPR_7: Tetratricopept 93.5 0.13 2.9E-06 30.9 3.5 26 602-627 1-26 (36)
278 KOG1920 IkappaB kinase complex 93.4 16 0.00035 41.1 22.4 137 439-592 914-1052(1265)
279 PF04184 ST7: ST7 protein; In 93.3 3.9 8.5E-05 41.2 14.9 99 500-598 260-378 (539)
280 KOG1550 Extracellular protein 93.2 14 0.0003 39.5 22.5 275 331-630 228-539 (552)
281 KOG3941 Intermediate in Toll s 93.2 1 2.2E-05 41.3 9.9 98 453-550 54-174 (406)
282 PF09613 HrpB1_HrpK: Bacterial 93.1 0.61 1.3E-05 39.2 7.9 94 536-630 9-107 (160)
283 TIGR02561 HrpB1_HrpK type III 93.0 0.61 1.3E-05 38.5 7.6 69 547-615 23-93 (153)
284 PF13181 TPR_8: Tetratricopept 93.0 0.17 3.6E-06 29.9 3.5 31 568-598 3-33 (34)
285 KOG2610 Uncharacterized conser 92.9 1.2 2.7E-05 41.9 10.3 161 475-636 114-283 (491)
286 COG2976 Uncharacterized protei 92.6 5.2 0.00011 34.9 12.9 132 466-599 56-192 (207)
287 KOG1920 IkappaB kinase complex 92.5 22 0.00048 40.2 25.1 126 447-592 894-1025(1265)
288 KOG1586 Protein required for f 92.4 8.1 0.00017 34.8 14.8 90 513-602 128-231 (288)
289 PF07719 TPR_2: Tetratricopept 92.2 0.19 4.2E-06 29.6 3.0 30 601-630 2-31 (34)
290 KOG2114 Vacuolar assembly/sort 92.1 20 0.00044 38.8 27.6 114 224-342 403-517 (933)
291 PF13176 TPR_7: Tetratricopept 92.1 0.23 4.9E-06 29.9 3.2 28 568-595 1-28 (36)
292 KOG4642 Chaperone-dependent E3 91.8 0.66 1.4E-05 41.5 6.8 86 543-628 19-106 (284)
293 KOG2066 Vacuolar assembly/sort 91.7 22 0.00047 38.2 24.9 170 260-465 363-537 (846)
294 COG4785 NlpI Lipoprotein NlpI, 91.4 9.8 0.00021 33.8 13.9 30 601-630 238-267 (297)
295 PF00637 Clathrin: Region in C 91.4 0.19 4E-06 42.5 3.2 51 23-73 12-66 (143)
296 COG3629 DnrI DNA-binding trans 91.3 1 2.2E-05 42.2 7.9 60 569-628 156-215 (280)
297 COG4785 NlpI Lipoprotein NlpI, 91.2 10 0.00022 33.7 14.0 161 360-527 96-265 (297)
298 PF10602 RPN7: 26S proteasome 91.1 5.1 0.00011 35.1 11.8 93 466-560 38-139 (177)
299 COG3629 DnrI DNA-binding trans 90.5 2 4.3E-05 40.3 9.1 79 315-407 153-236 (280)
300 PF13170 DUF4003: Protein of u 90.4 6.4 0.00014 37.8 12.7 64 481-544 160-227 (297)
301 PF00515 TPR_1: Tetratricopept 90.4 0.36 7.9E-06 28.4 2.9 30 601-630 2-31 (34)
302 PF09613 HrpB1_HrpK: Bacterial 90.4 10 0.00022 32.1 12.8 88 510-599 21-110 (160)
303 COG1747 Uncharacterized N-term 90.3 23 0.00049 36.0 21.4 193 430-627 63-286 (711)
304 PF07035 Mic1: Colon cancer-as 90.2 10 0.00022 32.6 12.3 134 104-247 14-149 (167)
305 PF13174 TPR_6: Tetratricopept 90.0 0.54 1.2E-05 27.3 3.5 26 603-628 3-28 (33)
306 COG4649 Uncharacterized protei 89.9 8.5 0.00019 32.8 11.1 30 468-497 171-200 (221)
307 PF07721 TPR_4: Tetratricopept 89.8 0.42 9.2E-06 26.1 2.6 24 601-624 2-25 (26)
308 PF14853 Fis1_TPR_C: Fis1 C-te 89.8 1 2.2E-05 29.9 4.8 35 569-603 4-38 (53)
309 KOG3364 Membrane protein invol 89.7 3.3 7.1E-05 33.5 8.3 70 531-600 29-105 (149)
310 PF13174 TPR_6: Tetratricopept 89.5 0.42 9.1E-06 27.8 2.7 31 569-599 3-33 (33)
311 PF00637 Clathrin: Region in C 89.5 1 2.2E-05 38.0 6.1 54 224-277 13-66 (143)
312 COG4649 Uncharacterized protei 89.2 13 0.00028 31.8 16.3 131 463-594 58-195 (221)
313 PF13374 TPR_10: Tetratricopep 89.2 0.88 1.9E-05 28.2 4.2 27 568-594 4-30 (42)
314 PRK15180 Vi polysaccharide bio 88.9 6.2 0.00013 39.3 11.2 125 511-637 301-428 (831)
315 PF08631 SPO22: Meiosis protei 88.7 23 0.0005 33.9 24.6 19 575-593 255-273 (278)
316 KOG0890 Protein kinase of the 88.6 71 0.0015 39.5 29.0 113 226-343 1391-1511(2382)
317 KOG1464 COP9 signalosome, subu 88.5 20 0.00044 33.0 18.5 247 328-591 40-328 (440)
318 KOG1258 mRNA processing protei 88.4 35 0.00075 35.6 30.9 138 48-188 44-189 (577)
319 PRK09687 putative lyase; Provi 88.1 25 0.00054 33.6 26.9 18 313-330 35-52 (280)
320 PF13170 DUF4003: Protein of u 87.5 8.2 0.00018 37.1 11.2 135 103-261 81-225 (297)
321 KOG1586 Protein required for f 87.4 22 0.00048 32.1 15.2 91 540-630 119-225 (288)
322 KOG4570 Uncharacterized conser 87.3 2.5 5.5E-05 39.5 7.2 48 64-111 115-162 (418)
323 KOG0545 Aryl-hydrocarbon recep 87.3 1.6 3.4E-05 39.3 5.7 62 569-630 233-294 (329)
324 PF04910 Tcf25: Transcriptiona 87.2 34 0.00073 34.1 17.4 53 508-560 112-165 (360)
325 KOG4507 Uncharacterized conser 86.7 2 4.4E-05 43.7 6.8 116 496-611 604-721 (886)
326 PF13181 TPR_8: Tetratricopept 86.6 1.3 2.8E-05 26.0 3.5 29 601-629 2-30 (34)
327 KOG2066 Vacuolar assembly/sort 86.3 53 0.0012 35.5 27.2 163 94-280 366-532 (846)
328 PF10602 RPN7: 26S proteasome 86.2 6.3 0.00014 34.5 9.0 64 50-113 37-102 (177)
329 PF13374 TPR_10: Tetratricopep 85.9 1.3 2.7E-05 27.5 3.4 29 601-629 3-31 (42)
330 smart00028 TPR Tetratricopepti 85.8 1.6 3.4E-05 24.6 3.8 29 569-597 4-32 (34)
331 PF06552 TOM20_plant: Plant sp 85.7 8 0.00017 33.4 8.8 66 562-634 64-141 (186)
332 PF09986 DUF2225: Uncharacteri 85.4 6.2 0.00013 35.8 8.8 65 566-630 118-195 (214)
333 PF14853 Fis1_TPR_C: Fis1 C-te 85.2 4.3 9.3E-05 27.0 5.7 28 602-629 3-30 (53)
334 KOG4234 TPR repeat-containing 85.1 16 0.00035 32.0 10.4 89 542-630 142-234 (271)
335 PF13431 TPR_17: Tetratricopep 84.9 0.75 1.6E-05 27.2 1.9 30 9-38 4-33 (34)
336 TIGR02508 type_III_yscG type I 84.7 7.4 0.00016 29.6 7.2 52 158-212 47-98 (115)
337 KOG0276 Vesicle coat complex C 84.6 26 0.00056 36.4 13.1 149 445-625 598-746 (794)
338 PF10345 Cohesin_load: Cohesin 84.5 67 0.0014 35.0 32.8 176 103-280 40-252 (608)
339 PF04097 Nic96: Nup93/Nic96; 84.0 69 0.0015 34.8 19.4 21 544-564 515-535 (613)
340 KOG0403 Neoplastic transformat 83.4 52 0.0011 32.9 18.9 61 288-348 513-576 (645)
341 PF11207 DUF2989: Protein of u 83.3 11 0.00023 33.4 8.9 72 481-553 123-197 (203)
342 PF06552 TOM20_plant: Plant sp 83.2 2.4 5.2E-05 36.4 4.8 47 581-627 50-100 (186)
343 KOG1308 Hsp70-interacting prot 83.0 0.89 1.9E-05 43.0 2.4 56 575-630 157-212 (377)
344 PF14561 TPR_20: Tetratricopep 82.7 3.1 6.7E-05 31.5 4.8 40 589-628 11-50 (90)
345 KOG4570 Uncharacterized conser 82.7 4.6 0.0001 37.9 6.7 48 479-526 115-162 (418)
346 PF02284 COX5A: Cytochrome c o 82.5 9.5 0.00021 29.2 7.1 58 482-541 28-86 (108)
347 TIGR02561 HrpB1_HrpK type III 82.5 28 0.0006 29.1 10.8 47 266-312 23-72 (153)
348 TIGR03504 FimV_Cterm FimV C-te 82.4 2.5 5.3E-05 26.8 3.5 27 604-630 3-29 (44)
349 KOG4648 Uncharacterized conser 82.1 7.5 0.00016 37.0 7.9 85 471-565 104-197 (536)
350 COG3947 Response regulator con 81.9 5.6 0.00012 37.0 6.9 60 569-628 282-341 (361)
351 cd00923 Cyt_c_Oxidase_Va Cytoc 81.6 12 0.00026 28.4 7.2 58 482-541 25-83 (103)
352 COG4455 ImpE Protein of avirul 81.3 5.7 0.00012 35.3 6.4 72 537-608 4-80 (273)
353 PF04097 Nic96: Nup93/Nic96; 80.4 93 0.002 33.9 17.5 85 440-527 265-355 (613)
354 PF02259 FAT: FAT domain; Int 80.2 66 0.0014 32.0 21.9 61 534-594 146-212 (352)
355 PF07721 TPR_4: Tetratricopept 80.2 2.1 4.7E-05 23.3 2.4 23 20-42 3-25 (26)
356 KOG1464 COP9 signalosome, subu 80.0 50 0.0011 30.5 16.1 201 360-560 23-258 (440)
357 PF11207 DUF2989: Protein of u 80.0 13 0.00028 32.9 8.2 79 191-273 117-198 (203)
358 COG0790 FOG: TPR repeat, SEL1 79.7 60 0.0013 31.3 19.7 146 479-630 92-267 (292)
359 cd00923 Cyt_c_Oxidase_Va Cytoc 79.7 12 0.00026 28.4 6.7 45 67-111 25-69 (103)
360 KOG0551 Hsp90 co-chaperone CNS 78.7 10 0.00022 36.1 7.5 89 540-628 87-181 (390)
361 COG4455 ImpE Protein of avirul 77.8 30 0.00064 31.0 9.6 127 467-601 4-140 (273)
362 PF04910 Tcf25: Transcriptiona 77.2 83 0.0018 31.4 15.0 119 498-628 39-167 (360)
363 PF14432 DYW_deaminase: DYW fa 76.8 2 4.2E-05 34.5 2.2 28 636-667 2-29 (116)
364 PF10579 Rapsyn_N: Rapsyn N-te 76.8 4.9 0.00011 29.1 3.9 48 576-623 16-66 (80)
365 PF04190 DUF410: Protein of un 76.5 69 0.0015 30.2 13.2 159 30-211 2-170 (260)
366 PF10345 Cohesin_load: Cohesin 76.4 1.2E+02 0.0026 33.0 32.2 129 149-279 58-205 (608)
367 PRK15180 Vi polysaccharide bio 76.4 70 0.0015 32.3 12.8 120 409-531 300-423 (831)
368 PF02284 COX5A: Cytochrome c o 76.2 27 0.00058 26.9 7.8 60 381-441 28-87 (108)
369 smart00028 TPR Tetratricopepti 76.1 4.7 0.0001 22.4 3.4 29 601-629 2-30 (34)
370 KOG0686 COP9 signalosome, subu 75.2 91 0.002 31.0 15.8 161 435-628 152-332 (466)
371 KOG2063 Vacuolar assembly/sort 74.7 1.5E+02 0.0032 33.4 16.0 27 121-147 506-532 (877)
372 KOG3364 Membrane protein invol 74.7 28 0.00061 28.5 8.0 68 563-630 29-101 (149)
373 COG5159 RPN6 26S proteasome re 74.6 29 0.00062 32.4 9.0 52 470-521 9-67 (421)
374 KOG0376 Serine-threonine phosp 73.6 2.5 5.4E-05 42.2 2.5 97 506-604 11-110 (476)
375 KOG3824 Huntingtin interacting 72.8 11 0.00025 35.2 6.2 50 577-626 127-176 (472)
376 PF09670 Cas_Cas02710: CRISPR- 72.3 63 0.0014 32.6 12.0 55 473-528 140-198 (379)
377 KOG4279 Serine/threonine prote 71.8 22 0.00048 37.9 8.6 192 362-599 200-399 (1226)
378 KOG0276 Vesicle coat complex C 71.5 72 0.0016 33.4 11.8 151 266-461 599-749 (794)
379 smart00386 HAT HAT (Half-A-TPR 71.4 7.5 0.00016 22.1 3.4 30 580-609 1-30 (33)
380 PF12862 Apc5: Anaphase-promot 71.3 12 0.00026 28.7 5.3 53 576-628 8-69 (94)
381 COG3947 Response regulator con 70.3 99 0.0022 29.2 14.9 61 317-391 281-341 (361)
382 COG4976 Predicted methyltransf 70.1 8.2 0.00018 34.6 4.5 56 576-631 5-60 (287)
383 TIGR02508 type_III_yscG type I 67.4 55 0.0012 25.2 10.3 60 441-503 47-106 (115)
384 PF13762 MNE1: Mitochondrial s 67.3 29 0.00062 29.0 6.9 81 52-132 42-128 (145)
385 COG2912 Uncharacterized conser 66.9 44 0.00096 31.2 8.7 60 570-629 185-244 (269)
386 KOG2422 Uncharacterized conser 66.8 1.7E+02 0.0037 30.7 17.3 51 509-559 352-403 (665)
387 PF14863 Alkyl_sulf_dimr: Alky 66.0 25 0.00053 29.3 6.4 65 550-617 57-121 (141)
388 TIGR02270 conserved hypothetic 66.0 1.6E+02 0.0035 30.0 20.6 233 25-280 45-279 (410)
389 PF13929 mRNA_stabil: mRNA sta 65.5 1.3E+02 0.0027 28.7 17.9 115 165-280 143-265 (292)
390 PRK13800 putative oxidoreducta 65.0 2.7E+02 0.0058 32.2 25.6 77 252-328 788-865 (897)
391 PF07163 Pex26: Pex26 protein; 63.5 1E+02 0.0022 29.1 10.1 51 440-490 90-144 (309)
392 PF14561 TPR_20: Tetratricopep 63.2 64 0.0014 24.4 8.2 63 564-626 20-85 (90)
393 PF07163 Pex26: Pex26 protein; 63.0 74 0.0016 29.9 9.2 89 368-456 88-181 (309)
394 KOG4507 Uncharacterized conser 62.6 36 0.00078 35.3 7.8 135 496-631 568-707 (886)
395 cd08819 CARD_MDA5_2 Caspase ac 61.9 61 0.0013 24.2 6.9 38 265-303 48-85 (88)
396 COG1747 Uncharacterized N-term 61.8 2E+02 0.0044 29.7 22.2 95 359-458 62-156 (711)
397 TIGR03504 FimV_Cterm FimV C-te 61.7 21 0.00044 22.7 4.0 23 470-492 5-27 (44)
398 PHA02875 ankyrin repeat protei 61.0 1.4E+02 0.0031 30.5 12.6 19 126-144 72-90 (413)
399 PF07720 TPR_3: Tetratricopept 60.4 28 0.00061 20.9 4.2 27 571-597 6-34 (36)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 60.2 58 0.0012 26.6 7.5 42 584-625 81-124 (126)
401 PRK12798 chemotaxis protein; R 59.8 2E+02 0.0043 29.0 22.9 151 446-598 125-289 (421)
402 PF13762 MNE1: Mitochondrial s 59.5 80 0.0017 26.5 8.1 82 19-100 40-131 (145)
403 PF10255 Paf67: RNA polymerase 59.1 56 0.0012 32.9 8.6 56 572-627 128-191 (404)
404 PRK13184 pknD serine/threonine 57.8 3.4E+02 0.0075 31.1 23.9 379 57-489 483-896 (932)
405 COG2976 Uncharacterized protei 57.7 1.4E+02 0.003 26.5 14.7 89 406-494 97-189 (207)
406 PF08424 NRDE-2: NRDE-2, neces 56.9 2E+02 0.0044 28.2 13.5 82 360-443 16-109 (321)
407 PF11846 DUF3366: Domain of un 56.9 41 0.0009 30.0 6.9 38 561-598 139-176 (193)
408 PHA02537 M terminase endonucle 56.8 1.3E+02 0.0028 27.6 9.7 106 475-599 94-211 (230)
409 PHA02875 ankyrin repeat protei 56.3 2.4E+02 0.0052 28.8 13.6 17 261-277 73-89 (413)
410 PF10579 Rapsyn_N: Rapsyn N-te 56.3 30 0.00066 25.2 4.5 45 476-520 18-64 (80)
411 cd08819 CARD_MDA5_2 Caspase ac 56.3 81 0.0018 23.6 6.8 38 131-169 48-85 (88)
412 COG2909 MalT ATP-dependent tra 54.7 3.5E+02 0.0076 30.3 26.2 56 368-423 623-684 (894)
413 PRK10941 hypothetical protein; 54.6 83 0.0018 29.8 8.6 64 539-602 186-251 (269)
414 PF07575 Nucleopor_Nup85: Nup8 53.6 3.2E+02 0.0069 29.5 13.9 58 397-456 404-461 (566)
415 KOG4077 Cytochrome c oxidase, 53.5 74 0.0016 25.7 6.6 43 484-526 69-111 (149)
416 COG2909 MalT ATP-dependent tra 53.2 3.7E+02 0.008 30.1 27.2 227 325-560 425-685 (894)
417 KOG1550 Extracellular protein 51.3 3.4E+02 0.0074 29.2 23.7 82 329-428 342-427 (552)
418 KOG3824 Huntingtin interacting 50.6 29 0.00063 32.7 4.7 22 655-676 330-351 (472)
419 PF12968 DUF3856: Domain of Un 49.7 92 0.002 25.0 6.5 58 570-627 59-127 (144)
420 KOG2581 26S proteasome regulat 49.1 2.9E+02 0.0063 27.7 13.4 63 536-598 211-279 (493)
421 PF04190 DUF410: Protein of un 48.7 2.4E+02 0.0052 26.6 18.5 83 430-527 87-169 (260)
422 PF09477 Type_III_YscG: Bacter 47.6 1.4E+02 0.003 23.5 9.4 78 414-494 22-99 (116)
423 KOG2908 26S proteasome regulat 47.5 75 0.0016 30.7 6.9 88 54-141 80-179 (380)
424 PF12862 Apc5: Anaphase-promot 47.4 70 0.0015 24.4 5.8 26 572-597 47-72 (94)
425 PRK12798 chemotaxis protein; R 46.7 3.2E+02 0.007 27.6 17.9 189 439-630 87-287 (421)
426 COG5108 RPO41 Mitochondrial DN 46.3 1.1E+02 0.0023 32.6 8.2 47 469-515 33-81 (1117)
427 KOG1308 Hsp70-interacting prot 46.3 20 0.00044 34.4 3.1 111 511-623 126-238 (377)
428 KOG2063 Vacuolar assembly/sort 46.2 4.9E+02 0.011 29.5 22.5 28 601-628 685-712 (877)
429 COG4976 Predicted methyltransf 46.2 35 0.00076 30.8 4.3 56 544-599 5-62 (287)
430 KOG0991 Replication factor C, 46.1 2.4E+02 0.0052 25.9 12.1 88 409-499 170-273 (333)
431 cd00280 TRFH Telomeric Repeat 45.8 1.2E+02 0.0025 26.6 7.1 28 542-569 119-146 (200)
432 KOG0545 Aryl-hydrocarbon recep 45.7 1.7E+02 0.0037 27.0 8.4 55 323-391 238-292 (329)
433 PF09477 Type_III_YscG: Bacter 45.6 1.5E+02 0.0032 23.3 8.7 73 99-174 21-93 (116)
434 KOG2659 LisH motif-containing 45.4 2.1E+02 0.0046 26.1 9.0 19 508-526 73-91 (228)
435 COG5191 Uncharacterized conser 45.4 50 0.0011 31.4 5.3 79 530-608 103-184 (435)
436 KOG4077 Cytochrome c oxidase, 44.7 1.3E+02 0.0029 24.3 6.7 46 382-427 68-113 (149)
437 KOG4642 Chaperone-dependent E3 43.8 2.5E+02 0.0054 26.0 9.1 59 318-390 47-105 (284)
438 KOG4814 Uncharacterized conser 43.6 1.1E+02 0.0024 32.4 7.9 63 568-630 396-458 (872)
439 PF12926 MOZART2: Mitotic-spin 43.3 1.4E+02 0.003 22.3 7.2 42 239-280 29-70 (88)
440 PF11848 DUF3368: Domain of un 43.2 83 0.0018 20.4 4.7 32 61-92 14-45 (48)
441 PF14689 SPOB_a: Sensor_kinase 43.0 55 0.0012 22.6 4.1 27 500-526 24-50 (62)
442 smart00777 Mad3_BUB1_I Mad3/BU 42.8 1.7E+02 0.0037 23.8 7.5 40 585-624 82-123 (125)
443 PF11768 DUF3312: Protein of u 41.2 3.9E+02 0.0085 28.1 11.3 56 437-492 412-472 (545)
444 COG5108 RPO41 Mitochondrial DN 40.6 2E+02 0.0044 30.7 9.1 79 320-412 33-117 (1117)
445 PF11848 DUF3368: Domain of un 40.5 82 0.0018 20.4 4.4 32 229-260 13-44 (48)
446 PF11846 DUF3366: Domain of un 40.5 1.1E+02 0.0023 27.3 6.9 31 496-526 141-171 (193)
447 COG0735 Fur Fe2+/Zn2+ uptake r 40.3 1.3E+02 0.0029 25.3 6.8 62 71-133 8-69 (145)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 39.6 2.1E+02 0.0045 23.3 9.2 42 482-523 81-123 (126)
449 PF04090 RNA_pol_I_TF: RNA pol 39.6 2.4E+02 0.0052 25.2 8.5 93 567-659 42-135 (199)
450 PRK10564 maltose regulon perip 38.9 63 0.0014 30.8 5.0 42 361-402 254-296 (303)
451 KOG2168 Cullins [Cell cycle co 38.1 6.2E+02 0.013 28.3 17.9 88 540-628 628-735 (835)
452 PF00244 14-3-3: 14-3-3 protei 37.6 3.4E+02 0.0073 25.2 12.4 163 469-631 6-200 (236)
453 PF10366 Vps39_1: Vacuolar sor 37.4 2.1E+02 0.0045 22.6 8.1 27 466-492 41-67 (108)
454 PRK13800 putative oxidoreducta 37.4 7.1E+02 0.015 28.8 29.3 255 305-594 625-880 (897)
455 KOG0292 Vesicle coat complex C 37.3 4.6E+02 0.0099 29.4 11.3 176 376-594 606-781 (1202)
456 KOG0376 Serine-threonine phosp 37.2 58 0.0013 33.1 4.8 100 293-408 13-115 (476)
457 COG5159 RPN6 26S proteasome re 37.0 3.7E+02 0.0081 25.5 14.3 119 369-487 9-148 (421)
458 COG0735 Fur Fe2+/Zn2+ uptake r 36.6 1.9E+02 0.0041 24.3 7.2 61 204-266 8-68 (145)
459 PF04781 DUF627: Protein of un 36.6 2.2E+02 0.0047 22.6 7.0 42 585-626 63-104 (111)
460 cd08326 CARD_CASP9 Caspase act 35.6 62 0.0014 24.1 3.7 35 131-165 42-76 (84)
461 PF11663 Toxin_YhaV: Toxin wit 34.8 53 0.0012 26.9 3.4 32 61-94 107-138 (140)
462 KOG1463 26S proteasome regulat 34.6 3.4E+02 0.0074 26.5 9.0 53 474-526 14-75 (411)
463 PF09670 Cas_Cas02710: CRISPR- 34.4 5E+02 0.011 26.2 12.4 56 371-427 139-198 (379)
464 cd00280 TRFH Telomeric Repeat 33.9 1.5E+02 0.0033 26.0 6.0 38 571-609 116-153 (200)
465 PF11817 Foie-gras_1: Foie gra 33.9 1.6E+02 0.0036 27.5 7.2 52 574-625 186-243 (247)
466 KOG2396 HAT (Half-A-TPR) repea 33.7 5.7E+02 0.012 26.6 33.1 451 65-560 87-556 (568)
467 PRK10564 maltose regulon perip 33.6 71 0.0015 30.4 4.5 38 51-88 259-296 (303)
468 KOG2300 Uncharacterized conser 33.6 5.6E+02 0.012 26.5 33.6 151 474-625 333-510 (629)
469 KOG4521 Nuclear pore complex, 33.4 8.5E+02 0.018 28.5 14.5 163 465-641 984-1168(1480)
470 PF10516 SHNi-TPR: SHNi-TPR; 32.5 97 0.0021 18.9 3.5 28 601-628 2-29 (38)
471 TIGR02710 CRISPR-associated pr 32.4 5.3E+02 0.012 25.9 11.8 54 471-524 137-196 (380)
472 PF07064 RIC1: RIC1; InterPro 32.4 4.3E+02 0.0094 24.9 15.3 60 571-630 184-250 (258)
473 PF14689 SPOB_a: Sensor_kinase 32.4 73 0.0016 22.0 3.4 29 363-391 23-51 (62)
474 smart00804 TAP_C C-terminal do 32.2 76 0.0016 22.1 3.4 28 192-219 35-62 (63)
475 KOG2581 26S proteasome regulat 32.1 5.4E+02 0.012 25.9 10.8 66 566-631 209-278 (493)
476 PF11768 DUF3312: Protein of u 32.1 5E+02 0.011 27.4 10.4 56 23-78 413-473 (545)
477 PF09986 DUF2225: Uncharacteri 32.0 4E+02 0.0086 24.3 10.3 30 570-599 169-198 (214)
478 cd08332 CARD_CASP2 Caspase act 31.8 1E+02 0.0022 23.4 4.4 29 133-161 48-76 (90)
479 PF13646 HEAT_2: HEAT repeats; 31.6 2.1E+02 0.0045 21.0 6.3 49 15-63 11-59 (88)
480 PF06957 COPI_C: Coatomer (COP 31.1 5.1E+02 0.011 26.5 10.2 48 384-431 284-333 (422)
481 PF15015 NYD-SP12_N: Spermatog 31.0 1.1E+02 0.0024 30.6 5.4 21 539-559 233-253 (569)
482 COG5191 Uncharacterized conser 30.9 1.2E+02 0.0026 29.0 5.4 70 562-631 103-173 (435)
483 KOG4567 GTPase-activating prot 30.7 5E+02 0.011 25.1 10.5 77 383-464 263-349 (370)
484 KOG0403 Neoplastic transformat 30.6 6E+02 0.013 26.0 25.6 64 568-631 511-574 (645)
485 PF13934 ELYS: Nuclear pore co 30.1 4.4E+02 0.0095 24.2 14.6 172 430-622 23-198 (226)
486 PF10366 Vps39_1: Vacuolar sor 29.8 2.8E+02 0.0061 21.9 8.0 26 87-112 42-67 (108)
487 KOG4279 Serine/threonine prote 29.7 5.2E+02 0.011 28.4 10.2 230 416-670 181-436 (1226)
488 PF11838 ERAP1_C: ERAP1-like C 29.5 5.4E+02 0.012 25.0 17.4 110 515-625 146-262 (324)
489 PF11817 Foie-gras_1: Foie gra 29.3 1.4E+02 0.0031 27.9 6.0 51 289-339 183-242 (247)
490 KOG0991 Replication factor C, 28.6 4.7E+02 0.01 24.1 14.4 47 563-610 236-282 (333)
491 cd07153 Fur_like Ferric uptake 28.6 1.4E+02 0.003 23.7 5.1 45 54-98 5-49 (116)
492 KOG2659 LisH motif-containing 28.2 4.7E+02 0.01 24.0 12.0 107 484-594 13-131 (228)
493 PRK11639 zinc uptake transcrip 28.1 3E+02 0.0066 23.8 7.3 67 66-133 8-74 (169)
494 cd08326 CARD_CASP9 Caspase act 28.0 1.1E+02 0.0023 22.9 3.9 32 32-63 44-75 (84)
495 KOG0508 Ankyrin repeat protein 28.0 6.8E+02 0.015 25.8 11.5 34 372-405 346-383 (615)
496 PF07219 HemY_N: HemY protein 28.0 2E+02 0.0044 22.6 5.7 37 578-614 71-107 (108)
497 smart00777 Mad3_BUB1_I Mad3/BU 27.9 3.4E+02 0.0073 22.2 9.1 41 518-558 82-123 (125)
498 KOG0686 COP9 signalosome, subu 27.6 6.5E+02 0.014 25.4 13.2 24 256-279 153-176 (466)
499 PRK09462 fur ferric uptake reg 27.6 3E+02 0.0065 23.2 7.1 58 75-133 8-66 (148)
500 PHA00425 DNA packaging protein 27.4 2.3E+02 0.005 20.6 5.0 53 330-407 14-66 (88)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-90 Score=768.72 Aligned_cols=637 Identities=31% Similarity=0.570 Sum_probs=619.9
Q ss_pred ccCccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 005732 14 QETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSV 93 (680)
Q Consensus 14 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~ 93 (680)
..|++.++|.+|.+|++.|+++.|.++|++|+.||..+||++|.+|++.|++++|+++|++|...|+.||..||++++++
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHh
Q 005732 94 CAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVF 173 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 173 (680)
|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|..+|..+|+++|.+|++.|+.++|+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC----CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005732 174 IKMP----KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGF 249 (680)
Q Consensus 174 ~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 249 (680)
++|. .||..+|+.++.+|.+.|+ .+.+.+++..|.+.|..| |..+|+.++.+|++.|++++|.++|+.|.
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----
Confidence 9985 6899999999999999999 899999999999999987 99999999999999999999999999985
Q ss_pred CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHH
Q 005732 250 EFDESIGGALIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSM 321 (680)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l 321 (680)
.||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|+++.|.++++.+.+ ++..+|+.+
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5788999999999999999999999999996 78899999999999999999999999999987 889999999
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~-----------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE-----------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC-----------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999964 5678999999999999999999999999986 699999999
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 481 (680)
+.++.+|++.|+.+.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.+
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 005732 561 PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWI 640 (680)
Q Consensus 561 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 640 (680)
+.+||..+|.+|+.+|..+|+.+.++...+++++++|+++..|..++++|...|+|++|.++.+.|+++|++++||+||+
T Consensus 652 ~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 641 ELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
++++.+|.|..+|.+||...+||.+|..+..+|++
T Consensus 732 e~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 732 EVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred EECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999975
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-74 Score=625.88 Aligned_cols=517 Identities=32% Similarity=0.608 Sum_probs=501.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 47 RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSN-VKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 47 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHH
Q 005732 126 LFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLF 205 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 205 (680)
+.+|++.|++++|.++|++| ++||..+||.++.+|++.|+ +++|+++|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m-------------------------------~~~~~~t~n~li~~~~~~g~-~~~A~~lf 212 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM-------------------------------PERNLASWGTIIGGLVDAGN-YREAFALF 212 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC-------------------------------CCCCeeeHHHHHHHHHHCcC-HHHHHHHH
Confidence 99999999999999999998 77899999999999999999 89999999
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccc
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLN 285 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 285 (680)
++|.+.|+.| |..||+.++.+|+..|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.
T Consensus 213 ~~M~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----- 286 (697)
T PLN03081 213 REMWEDGSDA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----- 286 (697)
T ss_pred HHHHHhCCCC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----
Confidence 9999999987 9999999999999999999999999999999999999999999999999999999998888774
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhH
Q 005732 286 ASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVT 365 (680)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (680)
++|+++
T Consensus 287 --------------------------------------------------------------------------~~~~vt 292 (697)
T PLN03081 287 --------------------------------------------------------------------------EKTTVA 292 (697)
T ss_pred --------------------------------------------------------------------------CCChhH
Confidence 678899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR 445 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (680)
||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|++|+..+++.|+.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 446 CGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 526 K-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 526 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
. +.|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+++.|..+++++++.+|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 8 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
.++++|.+.|+|++|.+++++|+++|+++.||+||+++++.+|.|..+|..||...+||++|..+..++++
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-70 Score=610.16 Aligned_cols=586 Identities=17% Similarity=0.233 Sum_probs=537.6
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccC----CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQM----PIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI 90 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l 90 (680)
+|+..+|..++.+|.+.+.++.|.+++..+ ..++...+|++|..|++.|+.+.|.++|++|. .||..+|+++
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~l 158 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVL 158 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHH
Confidence 344444444444444444444444444322 12455667888888999999999999999997 4788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcC----CchhHHHHHHHHHHhcCCh
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHE----DNELLWSLMLVGYVQCNLM 166 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 166 (680)
|.+|++.|++++|.+++++|...|+.||..+|+.++.++...++++.+.+++..+.+ ++..+|+.++.+|++.|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 999999999999999999999999999999999999999999999999999988864 6888999999999999999
Q ss_pred hhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 005732 167 SDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIK 246 (680)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 246 (680)
+.|.++|++|+.+|..+||.+|.+|++.|+ +++|+++|.+|.+.|+.| |..||+.++.+|++.|+.+.+.+++..|.+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGE-CLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999997 999999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHH
Q 005732 247 CGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMI 322 (680)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll 322 (680)
.|+.||..+|+.|+.+|++.|++++|.++|++|..++..+|+.++.+|++.|++++|+++|++|.. ||..+|+.++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 999999999999999999999999999999999988899999999999999999999999999976 9999999999
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
.+|++.|+++.|.++++.+.+.|. .++..+|+.||.+|++.|++++|.++|++|. .+|..+|+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~-------------~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~ 459 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGL-------------ISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCC-------------CcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHH
Confidence 999999999999999999999996 8999999999999999999999999999995 47889999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHHHHHHcC
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMNGYSHHG 478 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~ 478 (680)
.++.+|++.|+.++|..+|++|.+ ++.||..+|+.++.+|++.|+++.+.+++..+.+ ++..++++|+.+|++.|
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 999999999999999999999986 5899999999999999999999999999988763 88999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
+.++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+
T Consensus 539 ~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 539 RMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 999999999987 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 559 DM----PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 559 ~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.| ++.|+..+|+.++.++.+.|++++|.++++++ ...|+ +.+|..|..+|...|+.+.+....+++.+..+
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 98 57899999999999999999999999999998 35665 47899999999999999999999998887543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-64 Score=548.29 Aligned_cols=525 Identities=17% Similarity=0.212 Sum_probs=475.6
Q ss_pred ccCccchhhHHHHHhhcCCChhHHHHhhccCCCC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHH
Q 005732 14 QETLIVSTNKAITECGRNGQLVTARNLFDQMPIR-----TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFS 88 (680)
Q Consensus 14 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~ 88 (680)
..+++..|..++..|++.|++++|.++|++|+++ +...++.++.+|.+.|..++|+.+++.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3577888999999999999999999999999865 455677888899999999999999999974 9999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhc----CCchhHHHHHHHHHHhcC
Q 005732 89 TILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELH----EDNELLWSLMLVGYVQCN 164 (680)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~ 164 (680)
.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 478999999999999999
Q ss_pred ChhhHHHHhccCC----CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCCCCCcchHHHHHHHHhccCChhhHH
Q 005732 165 LMSDAFDVFIKMP----KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRE--SGENMPNEYTFDSVIRACARLGAFCEGK 238 (680)
Q Consensus 165 ~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 238 (680)
++++|.++|++|. .||..+|+.+|.+|++.|+ +++|.++|++|.. .|+.| |..+|+++|.+|++.|++++|.
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~-~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA-VDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999995 6899999999999999999 9999999999986 56776 9999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--
Q 005732 239 VVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE-- 312 (680)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 312 (680)
++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|.+++++|.+
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998 68888999999999999999999999999987
Q ss_pred --CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005732 313 --ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMR 390 (680)
Q Consensus 313 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 390 (680)
||..+|+.++.+|++.|++++|.++|++|...++ .|+..+|+.||.+|++.|++++|.++|++|.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-------------~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-------------RPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999998885 8999999999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHH
Q 005732 391 KLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTAL 470 (680)
Q Consensus 391 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 470 (680)
..|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.++. +++++|.++.+.+.. |+.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~- 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS- 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-
Confidence 999999999999999999999999999999999999999999999999987644 245555554333221 110
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
.......+..+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+++++++++. .
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--h
Confidence 11111223346799999999999999999999999988889999999999999998888899999999999998432 4
Q ss_pred HHHHHHHHhC---CCCCCHH
Q 005732 551 HEAEEFIKDM---PIELDAV 567 (680)
Q Consensus 551 ~~A~~~~~~~---~~~p~~~ 567 (680)
++|..++++| ++.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 6899999998 5666653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-62 Score=531.05 Aligned_cols=499 Identities=18% Similarity=0.228 Sum_probs=354.9
Q ss_pred chhhhhHHHHHHcCCChHHHHHHHhhhcCCc-----hhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHh
Q 005732 119 EFVGSGLLFFYANCFEIEEAKRVFDELHEDN-----ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAK 193 (680)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 193 (680)
...|..++..+.+.|++++|.++|++|.+++ ...++.++..|.+.|.+++|..+|+.|..||..+|+.+|.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3344444444444455555555555544332 22233444445555555555555555566666666666666666
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHH
Q 005732 194 SVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAM 273 (680)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (680)
.|+ ++.|.++|++|.+.|+.| |..+|+.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 450 ~g~-~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 450 SQD-IDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred CcC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 666 666666666666666664 666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc------CChhHHHHHHHHHhccCChhhHHHHHhhcCc
Q 005732 274 RVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE------ANSISYNSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 274 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
++|+.|. .|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666664 45566666666666666666666666666632 7777888888888888888888888888888
Q ss_pred CCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 005732 344 RSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
.++ +|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.
T Consensus 608 ~gi-------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 608 YNI-------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred cCC-------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 775 7788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS----SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8888888888888888888888888888888888774 478888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----c-------------------CChHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----S-------------------GHLHEAEEF 556 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~ 556 (680)
.||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 88888888888888888888888888888888888888887765432 1 123568888
Q ss_pred HHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHhhCCC
Q 005732 557 IKDM---PIELDAVVWGALLSACWFWMNMEVGERAAQKMFG-LDKKPISAYVILSNIYAVLGKW-GKKMDIRKRLTHLEV 631 (680)
Q Consensus 557 ~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 631 (680)
|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..+++.+ |++ ++|..++++|...|+
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCC
Confidence 8888 6888888888888776677788887777766532 2333446677888776 333 578888888888887
Q ss_pred ccCC
Q 005732 632 KKDP 635 (680)
Q Consensus 632 ~~~~ 635 (680)
.++.
T Consensus 912 ~p~~ 915 (1060)
T PLN03218 912 VPSV 915 (1060)
T ss_pred CCCc
Confidence 6654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-56 Score=484.28 Aligned_cols=462 Identities=16% Similarity=0.237 Sum_probs=390.0
Q ss_pred CccchhhHHHHHhhcCCChhHHHHhhccCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 005732 16 TLIVSTNKAITECGRNGQLVTARNLFDQMP-----IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI 90 (680)
Q Consensus 16 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l 90 (680)
++..+++.+|..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.+..++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999884 468999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHH
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAF 170 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 170 (680)
+..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--------------------- 219 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--------------------- 219 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---------------------
Confidence 999999999999999999985 5899999999999999999999999999996543
Q ss_pred HHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 005732 171 DVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFE 250 (680)
Q Consensus 171 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 250 (680)
..|+..+|+.++.++...+. .+.+.+++..+.+.|..| |..+|+.++.+|++.|++++|.++|+.|. +
T Consensus 220 ------~~p~~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 287 (697)
T PLN03081 220 ------SDAEPRTFVVMLRASAGLGS-ARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP----E 287 (697)
T ss_pred ------CCCChhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 44566666666666666665 566666666666666554 66666666666666666666666666553 3
Q ss_pred CCchHHHHHHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHH
Q 005732 251 FDESIGGALIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMI 322 (680)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll 322 (680)
+|..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|.+++..|.+ ||..+|+.++
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 455666666666666666666666666664 45555666666666666666666666666655 7888899999
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~-----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR-----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC-----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 999999999999999999864 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHh-cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCh
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVK-TPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-SPNVAAWTALMNGYSHHGLG 480 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 480 (680)
.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++. .|+..+|++|+.+|...|+.
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999986 5999999999999999999999999999999987 59999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 481 SEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+.|+...
T Consensus 511 ~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 511 ELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999976 5565 67999999999999999999999999999887643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-36 Score=345.11 Aligned_cols=580 Identities=12% Similarity=0.022 Sum_probs=354.1
Q ss_pred HHHHHhhcCCChhHHHHhhccCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 005732 23 KAITECGRNGQLVTARNLFDQMP---IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNS 99 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 99 (680)
.+...+...|++++|...|++.. ..+...+..+...+.+.|++++|...++.+.... +.+...+..+...+...|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 33444455555555555555442 1233445555555566666666666666655442 2344455555555666666
Q ss_pred hHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHHHHHHhcCChhhHHHHhccC
Q 005732 100 LIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLMLVGYVQCNLMSDAFDVFIKM 176 (680)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 176 (680)
++.|.++++.+.+... .+...+..+...+...|++++|.+.++...+. ....+..++..+.+.|++++|..+++++
T Consensus 379 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666666666555432 23444555555666666666666666655432 2233445555666666666666666655
Q ss_pred C---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc
Q 005732 177 P---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDE 253 (680)
Q Consensus 177 ~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 253 (680)
. .++...|..+...+...|+ +++|.+.|+++.+.. |.+...+..+...+...|++++|...++.+.+.+ +.+.
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 4 2244456666666666666 666666666666543 2245555566666666666666666666666554 3345
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhc
Q 005732 254 SIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAV 327 (680)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 327 (680)
.++..+...+.+.|+.++|...|+++. +.+...+..++..+...|++++|...++.+.. .+...|..+...+..
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 566666666666666666666666654 44445555666666666666666666666654 344566666666666
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHA 407 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 407 (680)
.|++++|...|+++.+.+ +.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 614 ~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ--------------PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 667777766666666544 4455566666666666777777777776666532 2335566666666
Q ss_pred hcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHH
Q 005732 408 CSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVL 485 (680)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 485 (680)
+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.+.|++++|.+
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHH
Confidence 666777777777776666655 45555666666666677777777777766542 444556666666677777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005732 486 LFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL 564 (680)
Q Consensus 486 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 564 (680)
.++++.+.. ..+...+..+...|...|++++|.++|+++.+.. +.+...++.+...+...|+ ++|+++++++ ...|
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 777666643 2245566666666666777777777777776543 3456666666677777776 6677766665 2233
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++..+..++..+...|++++|..+++++++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455556666666677777777777777777777766777777777777777777777777664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-35 Score=335.50 Aligned_cols=593 Identities=12% Similarity=0.060 Sum_probs=401.2
Q ss_pred cccCccchhhHHHHHhhcCCChhHHHHhhccCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 005732 13 TQETLIVSTNKAITECGRNGQLVTARNLFDQMPI--R-TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89 (680)
Q Consensus 13 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ 89 (680)
..+.++.++..++..+...|++++|...++.+.+ | +...+......+...|++++|...|+.+.+.+.. +...+..
T Consensus 222 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~ 300 (899)
T TIGR02917 222 LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLL 300 (899)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHH
Confidence 3456677788888888888888888888877632 2 2223333333445566677777777666654311 1222223
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHHHHHHhcCCh
Q 005732 90 ILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLMLVGYVQCNLM 166 (680)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 166 (680)
+...+...|+++.|...++.+.+... .+...+..+...+.+.|++++|...++.+... +...+..+...+.+.|++
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 33344455666666666665555432 23344444555555555555555555554332 233445555555555555
Q ss_pred hhHHHHhccCCC--C-CeeeHH----------------------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 005732 167 SDAFDVFIKMPK--K-DVVVWT----------------------------------KLISGYAKSVDGCEKALKLFRWMR 209 (680)
Q Consensus 167 ~~A~~~~~~~~~--~-~~~~~~----------------------------------~ll~~~~~~~~~~~~a~~~~~~m~ 209 (680)
++|.++|+++.. | +...+. .++..+.+.|+ +++|.++++.+.
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~ 458 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ-FDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 555555554331 1 222233 33444444455 455555555554
Q ss_pred HcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccch
Q 005732 210 ESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNA 286 (680)
Q Consensus 210 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 286 (680)
... |++..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+.+. +.+...
T Consensus 459 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 459 KKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 432 2245556666666666666666666666665543 2334455555666666666666666666654 444455
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh
Q 005732 287 SNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP 363 (680)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 363 (680)
+..+...+...|+.++|...++++.. .+...+..++..+...|++++|..+++.+.+.. +.+.
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~ 601 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------------PDSP 601 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------------CCCH
Confidence 55666666666666666666666644 233455566666666666666666666665544 5667
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 788888888888888888888888887643 3345567778888888888888888888888765 56677888888888
Q ss_pred HhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005732 444 SRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK 520 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 520 (680)
...|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887764 45667788888888999999999999998884 4555777778888899999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 521 IFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.++.+.+.. +.+...+..+...|...|++++|.+.|+++ . .++++..+..++..+...|+ .+|+.+++++++..|+
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 999888654 446788888889999999999999999987 2 34578888999999999999 8899999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
++..+..++.++...|++++|.++++++.+.++
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999988664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.9e-26 Score=262.58 Aligned_cols=594 Identities=10% Similarity=-0.002 Sum_probs=421.1
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCC--CCCh-hhH----------------HHHHHHHHcCCChhHHHHHHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMP--IRTV-VSW----------------NTMLCGYSKWAKFDESLSLVSTM 75 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~~----------------~~ll~~~~~~~~~~~a~~~~~~m 75 (680)
+.|+.++..++..+.+.|+.++|.+.+++.. .|+. ..+ ..+...+...|++++|+..|+.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566667777888888888888888888764 2322 211 22234567778888888888888
Q ss_pred HhCCCCCCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCch----
Q 005732 76 HRSNVKLNET-TFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNE---- 150 (680)
Q Consensus 76 ~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---- 150 (680)
.+.+ +|+.. ............|+.++|.+.++.+++..+ .+...+..+..++...|+.++|+..++++.....
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 7642 23322 111111222345788888888888877753 3556677788888888888888888887654221
Q ss_pred --hHHHH-----------------HHHHHHhcCChhhHHHHhccCCC--CCeee-HHHHHHHHHhCCCChHHHHHHHHHH
Q 005732 151 --LLWSL-----------------MLVGYVQCNLMSDAFDVFIKMPK--KDVVV-WTKLISGYAKSVDGCEKALKLFRWM 208 (680)
Q Consensus 151 --~~~~~-----------------l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m 208 (680)
..|.. .+..+-.....+.|...+.+... .|+.. .......+...|+ +++|+..|++.
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~-~~~A~~~l~~a 295 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ-GGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC-HHHHHHHHHHH
Confidence 11111 11111111223344444433221 11111 1223445667788 89999999999
Q ss_pred HHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc-hHH------------HHHHHHhhcCCCHHHHHHH
Q 005732 209 RESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDE-SIG------------GALIEFYCGCEAFDGAMRV 275 (680)
Q Consensus 209 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~li~~~~~~g~~~~A~~~ 275 (680)
.+.. |.+...+..+..++.+.|++++|...++..++....... ..+ ......+.+.|++++|...
T Consensus 296 L~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8865 337888899999999999999999999998876532211 111 1224567789999999999
Q ss_pred HhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchh
Q 005732 276 YDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISL 349 (680)
Q Consensus 276 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 349 (680)
|+++. |.+...+..+...+...|++++|++.|++... |+ ...+..+...+. .++.++|...++.+........
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 99887 55566677788999999999999999999887 33 445666666664 4678999988887654321000
Q ss_pred hhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 350 NTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.... .......+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+.+..
T Consensus 453 ~~~~-----~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 453 DDIE-----RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHH-----HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0000 0011234566778889999999999999999885 34 45567788889999999999999999998765
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005732 429 FESNVYVGTSLVDMYSRCGSINDAQASFSSISSP----NV---------AAWTALMNGYSHHGLGSEAVLLFEIMLEQDI 495 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 495 (680)
+.++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|+.+++. .
T Consensus 526 -P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 526 -PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 455666666666778899999999999988641 11 1223456678899999999999872 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 573 (680)
.++...+..+...+.+.|++++|++.|+++.... +.+...+..++..|...|++++|++.++.. ...| +...+..+.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3455667778889999999999999999999764 346788889999999999999999999987 3444 566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPIS------AYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...|++++|.++++++++..|+++. .+..++.++...|++++|++.+++...
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888999999999999999998776543 566779999999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.3e-27 Score=267.88 Aligned_cols=584 Identities=11% Similarity=0.050 Sum_probs=439.7
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCC--CC-ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhH----------
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMP--IR-TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTF---------- 87 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~---------- 87 (680)
.-..++.+...++.+.|.+.++++. .| |...+..++..+.+.|+.++|...+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 3445567778999999999999864 33 67889999999999999999999999998864 443322
Q ss_pred -------HHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHH
Q 005732 88 -------STILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLML 157 (680)
Q Consensus 88 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~ 157 (680)
....+.+...|++++|.+.++.+.+...+........+.......|+.++|.+.++++.+. +...+..+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2233457788999999999999987653322222222222333469999999999998864 455788899
Q ss_pred HHHHhcCChhhHHHHhccCCCCCee------eH-----------------HHHHHHHHhCCCChHHHHHHHHHHHHcCCC
Q 005732 158 VGYVQCNLMSDAFDVFIKMPKKDVV------VW-----------------TKLISGYAKSVDGCEKALKLFRWMRESGEN 214 (680)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~~~~~~~~------~~-----------------~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (680)
..+...|+.++|++.++++...... .| ...+..+-.... .+.+...+.++......
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~-~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS-VAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH-HHHHHHHHHHHHHhccC
Confidence 9999999999999999987532111 01 111111111111 34455555555443322
Q ss_pred CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--CC-ccc--hh--
Q 005732 215 MPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--NP-CLN--AS-- 287 (680)
Q Consensus 215 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~--~~-- 287 (680)
| +.. .......+...|++++|...++..++.. +.+...+..+...|.+.|++++|+..|++.. .| +.. .+
T Consensus 268 p-~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 268 P-AFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred c-chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 2 211 1233556778999999999999999875 4467889999999999999999999999877 22 211 11
Q ss_pred ----------hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhh
Q 005732 288 ----------NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMIS 354 (680)
Q Consensus 288 ----------~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 354 (680)
......+.+.|++++|+..|++... .+...+..+...+...|++++|++.|+++.+.+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--------- 415 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--------- 415 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------
Confidence 1224567789999999999999988 345577888999999999999999999999876
Q ss_pred hcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--------CChhhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 355 VIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID--------RTRSTFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
+.+...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|...+++..+
T Consensus 416 -----p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 416 -----PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred -----CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777777777775 46789999988765332100 0112345566778889999999999999998
Q ss_pred cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---
Q 005732 427 TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA--- 500 (680)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--- 500 (680)
.. +.++..+..+...|.+.|++++|...++++.+ .+...+..+...+...++.++|+..++.+......++..
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 86 66778888999999999999999999998753 355556566666778999999999998865433222221
Q ss_pred ------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005732 501 ------TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGAL 572 (680)
Q Consensus 501 ------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 572 (680)
.+..+...+...|+.++|.++++. .+.+...+..+...+.+.|++++|++.+++. ...| ++..+..+
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~l 643 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGL 643 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 123456678889999999999872 3456667788999999999999999999988 4455 68889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+..+...|++++|+..++++.+..|+++..+..++.++...|++++|.++++++.....
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999999999999999999999999999987643
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4.1e-23 Score=224.11 Aligned_cols=606 Identities=10% Similarity=-0.025 Sum_probs=411.7
Q ss_pred HhhhhcccCccchhhHHHHHhhcCCChhHHHHhhccCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHh
Q 005732 8 SQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMP--IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNET 85 (680)
Q Consensus 8 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 85 (680)
.+.+...|-++.++..+.++|.+.|++++|+..+++.. .|+-..|..++..+ +++.+|..+|+++.+.. +-+..
T Consensus 68 ~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~ 143 (987)
T PRK09782 68 EYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDA 143 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChh
Confidence 34445556677788999999999999999999998875 34333343334333 88889999999998863 22344
Q ss_pred hHHHHHHHH-----hccCChHHHHHHHHHHHHhCCCCcchhhhhH-HHHHHcCCChHHHHHHHhhhcCCc---hhHHHHH
Q 005732 86 TFSTILSVC-----AQLNSLIDGKQIHCLVLKSGYECFEFVGSGL-LFFYANCFEIEEAKRVFDELHEDN---ELLWSLM 156 (680)
Q Consensus 86 t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l 156 (680)
.+..+.... .+-...+.|.+.++ .......|.+.+.... ..+|...|++++|+..+.++.+.+ ......+
T Consensus 144 ~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L 222 (987)
T PRK09782 144 VPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQW 222 (987)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 444444430 11223466666666 4334445556555555 889999999999999999988653 3346666
Q ss_pred HHHHHh-cCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHH--------
Q 005732 157 LVGYVQ-CNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRA-------- 227 (680)
Q Consensus 157 ~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~-------- 227 (680)
..+|.+ .++ +.|..+++...+.++..+..+...+.+.|+ .++|.+++.++......-|...++..++.-
T Consensus 223 ~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~-~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~ 300 (987)
T PRK09782 223 FDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGE-KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA 300 (987)
T ss_pred HHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCC-HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh
Confidence 677777 366 888888776556678888899999999999 799999999886654432244443333222
Q ss_pred ----------------------HhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhh--cCCCHHHHHHHHhhcC---
Q 005732 228 ----------------------CARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYC--GCEAFDGAMRVYDRLE--- 280 (680)
Q Consensus 228 ----------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~--- 280 (680)
+.+.++++.++++. ...|.... ..++.+. ..+...++...++.+-
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 301 LANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE 372 (987)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC
Confidence 22222222222110 12222221 1222111 1233444444444433
Q ss_pred CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc------CChhHHHHHHHHHhccCCh---hhHHHHHhhcCcCCc-----
Q 005732 281 NPCLNASNSLINGLISMGRIEDAELIFNRLTE------ANSISYNSMIKGYAVYGQV---DDSKRLFEKMPHRSI----- 346 (680)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~----- 346 (680)
+.+......+.--.++.|+.++|..+|+.... .+.....-++..|.+.+.. ..+..+...+...+-
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 22334444445556677888888888888766 2222333666777776663 333333211111100
Q ss_pred ------chhhhHhhhcccCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHH
Q 005732 347 ------ISLNTMISVIPEMER--NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQ 418 (680)
Q Consensus 347 ------~~~~~l~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 418 (680)
.....+...+...++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 011111122222355 77888888888877 8899999988888764 466555444555567899999999
Q ss_pred HHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005732 419 LLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN---VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI 495 (680)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 495 (680)
..++.+... +|+...+..+...+.+.|+.++|.+.++...+.+ ...+..+.......|++++|+..+++..+ .
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l 605 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--I 605 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--h
Confidence 999987665 3444455677788899999999999998877532 22333333444556999999999999998 5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 573 (680)
.|+...+..+...+.+.|++++|+..+++..... +.+...+..+..++...|++++|++.+++. ...| ++..+..+.
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6788889999999999999999999999999764 336778888999999999999999999987 4555 688889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 636 (680)
.++...|++++|+..++++++++|+++.+....+++..+..+++.|.+-+++....++....|
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~ 747 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIG 747 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhc
Confidence 999999999999999999999999999999999999999999999999998887765544433
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=9.1e-24 Score=202.72 Aligned_cols=446 Identities=13% Similarity=0.073 Sum_probs=342.6
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCC--CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhcc
Q 005732 154 SLMLVGYVQCNLMSDAFDVFIKMPK--KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARL 231 (680)
Q Consensus 154 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 231 (680)
..+..-..+.|++++|++--..+-. |....-..++.+-..++.++++....-....+.. |--.++|+.+.+.+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHh
Confidence 3444445556666666665544432 2211222233332223332455444333333332 22567788888888888
Q ss_pred CChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHH
Q 005732 232 GAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFN 308 (680)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 308 (680)
|+++.|...+..+++.. +..+..|..+..++...|+.+.|...|.... |........+...+-..|+.++|...|.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 88888888888887764 3356677778888888888888888877766 3233333445555666788888888877
Q ss_pred Hhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHH
Q 005732 309 RLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQL 385 (680)
Q Consensus 309 ~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 385 (680)
+..+ |. ...|+.|...+-..|+...|++.|++..+.+ +.-...|-.|...|...+.+++|+..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--------------P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--------------PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--------------CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 7766 43 3478888888889999999999999998876 55677888999999999999999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 005732 386 YMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--- 461 (680)
Q Consensus 386 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 461 (680)
|.+... ..|+ ...+..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++...|++.+|++.+++...
T Consensus 275 Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 988876 4454 4567777788889999999999999998876 55677899999999999999999999998774
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTC 539 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 539 (680)
....+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|+..+++..+ +.|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 4466888899999999999999999999988 7777 66788999999999999999999999987 5565 678899
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
+...|...|+.+.|.+.+.+. .+.|. ....+.|...+...|++.+|++.|+.++++.|+.+.++-.++..+.--.+|.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 999999999999999999987 56675 6788999999999999999999999999999999999999999888777776
Q ss_pred HHHHHH
Q 005732 618 KKMDIR 623 (680)
Q Consensus 618 ~A~~~~ 623 (680)
+-.+-+
T Consensus 508 D~d~~~ 513 (966)
T KOG4626|consen 508 DYDKRM 513 (966)
T ss_pred chHHHH
Confidence 633333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.4e-21 Score=210.50 Aligned_cols=292 Identities=10% Similarity=0.002 Sum_probs=217.7
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcC-CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCC---hHHHHHH----------
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHR-SIISLNTMISVIPEMERNPVTWNSMISGYVQNNL---HEKALQL---------- 385 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~---------- 385 (680)
-+.-...+.|+.++|.++|+..... +- ...+.....-++..|.+.+. ..++..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGD------------ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcc------------cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 3334456778889999998887762 11 02233344455666666554 2333222
Q ss_pred ------------HHHHHH-CCCCC---ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 386 ------------YMTMRK-LAIDR---TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 386 ------------~~~m~~-~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
+..... .+..| +...+..+..++.. ++.++|...+....... |+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 111211 11223 45566666666665 88888999888777664 4444444455556789999
Q ss_pred HHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 450 NDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 450 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
++|...|+++.. |+...+..+..++.+.|+.++|...+++..+.+ |+ ...+..+.......|++++|...+++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999997764 555567777888899999999999999999854 44 3333344445556799999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 527 SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
... |+...+..+..++.+.|++++|++.+++. ...| ++..+..+..++...|+.++|+..++++++..|+++.++.
T Consensus 604 ~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 604 NIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred HhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 754 46788999999999999999999999988 4556 5778888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.++.++...|++++|...+++..+..
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998754
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=9.3e-23 Score=195.85 Aligned_cols=423 Identities=14% Similarity=0.127 Sum_probs=354.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
-..|..-..+.|+ +++|.+.-...-..+.. +......+-..+.+..+.+....--....+.. +--..+|..+.+.+
T Consensus 51 ~l~lah~~yq~gd-~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGD-YKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 4455566677888 99999887666554422 44444445555666666666555444444432 33467899999999
Q ss_pred hcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CChhH-HHHHHHHHhccCChhhHHHH
Q 005732 264 CGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANSIS-YNSMIKGYAVYGQVDDSKRL 337 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~ 337 (680)
...|++++|+..++.+. +..+..|..+..++...|+.+.|.+.|.+..+ |+... .+.+...+...|+.++|...
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999987 67778899999999999999999999999888 54443 34455566678999999999
Q ss_pred HhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccCChHH
Q 005732 338 FEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQ 416 (680)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 416 (680)
+.+..... +--.+.|+.|...+..+|+...|+..|++..+ +.|+ ...|..+...|...+.++.
T Consensus 207 YlkAi~~q--------------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 207 YLKAIETQ--------------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHHhhC--------------CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 99888765 45577899999999999999999999999987 5565 3578899999999999999
Q ss_pred HHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005732 417 GQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQ 493 (680)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 493 (680)
|...+.+..... +.....+..+...|-..|.++-|+..+++..+ |+ ...|+.|..++...|+..+|+..|.+...
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 999999988775 66677888888899999999999999999875 44 56899999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHH
Q 005732 494 DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVW 569 (680)
Q Consensus 494 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 569 (680)
+.|+ ....+.|...+...|.+++|..+|....+. .|. ...++.|...|.+.|++++|+..+++. .++|+ ...+
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 5566 678889999999999999999999998864 333 567889999999999999999999987 78886 7789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+.++..|...|+...|.+.+.+++..+|.-++++..|+.+|..+|+..+|+.-+++.++..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999887543
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.6e-19 Score=177.62 Aligned_cols=547 Identities=11% Similarity=0.049 Sum_probs=401.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh--ccCChHHHHHHHHHHHHhC--CCCcchhhhhHHHHHHcCCChHHHH
Q 005732 64 KFDESLSLVSTMHRSNVKLNETTFSTILSVCA--QLNSLIDGKQIHCLVLKSG--YECFEFVGSGLLFFYANCFEIEEAK 139 (680)
Q Consensus 64 ~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (680)
+++.|...|....+.. ++|. ...+.++|. ..+++..|..+|..++... ..||+.+ .+..++.+.|+.+.|+
T Consensus 145 ~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred cHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 3689999999988762 2333 333455554 4679999999999987765 3455543 4557788999999999
Q ss_pred HHHhhhcCCchhHHHHHHH------HHHhcCChhhHHHHhccCC---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005732 140 RVFDELHEDNELLWSLMLV------GYVQCNLMSDAFDVFIKMP---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRE 210 (680)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 210 (680)
..|....+-|+..-.+++. .+-....++.++.++...- ..+++..+.|-..|.-.++ ++.++.+...+..
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 9999988776644333322 1122345566777766543 4578889999999999999 8999999999876
Q ss_pred cCCCC-CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccch
Q 005732 211 SGENM-PNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNA 286 (680)
Q Consensus 211 ~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 286 (680)
....- --...|-.+.+++-..|++++|...|-...+.....-...+--|..+|...|+++.+...|+.+. |+...+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 54221 12345888999999999999999999887766422223445567889999999999999999988 666667
Q ss_pred hhHHHHHHHhcC----CHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcC----cCCcchhhhHhhh
Q 005732 287 SNSLINGLISMG----RIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMP----HRSIISLNTMISV 355 (680)
Q Consensus 287 ~~~l~~~~~~~g----~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~ 355 (680)
...+...|...+ ..+.|..++.+... .|...|-.+...+-...-+.. ...|..+. ..+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~---------- 447 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG---------- 447 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC----------
Confidence 666677777665 56777777777776 456677777777766554433 55444433 222
Q ss_pred cccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCh------hhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 356 IPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL---AIDRTR------STFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
.++.+...|.+...+...|++++|...|...... ...++. .+--.+....-..++.+.|.+.|..+.+
T Consensus 448 ---~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 448 ---KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred ---CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2466788999999999999999999999998764 122333 2333345555667899999999999998
Q ss_pred cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHH
Q 005732 427 TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATF 502 (680)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~ 502 (680)
.. +.-+..|-.++.+....+...+|...++.+.. .++..+..+...+.....+..|.+-|....+. ...+|..+.
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 75 44444555555444456788899999988764 66778888888888888888888877666543 223677777
Q ss_pred HHHHHHHhc------------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH
Q 005732 503 VGVLSACVR------------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVV 568 (680)
Q Consensus 503 ~~ll~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 568 (680)
..|...|.. .+..++|+++|.++.+.. +.+...-|.+.-+++..|++.+|..+|.+.. ......+
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV 682 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce
Confidence 777775543 345788999999888765 3467777788888999999999999999883 3345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLD--KKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
|..++.+|...|++..|+++|+..++.. .+++.....|++++.+.|++.+|.+.+.......+.
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999998854 335677889999999999999999999888765443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.7e-19 Score=189.90 Aligned_cols=420 Identities=12% Similarity=0.031 Sum_probs=273.2
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhh
Q 005732 185 TKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYC 264 (680)
Q Consensus 185 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (680)
......+.+.|+ +++|+..|++.++.. | +...|..+..++.+.|++++|...++..++.. +.+...+..+..+|.
T Consensus 131 k~~G~~~~~~~~-~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 131 KEKGNKAYRNKD-FNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344555666666 777777777766543 3 56667777777777777777777777776654 334556666777777
Q ss_pred cCCCHHHHHHHHhhcC--C-CccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhc
Q 005732 265 GCEAFDGAMRVYDRLE--N-PCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKM 341 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 341 (680)
..|++++|...|..+. . ........++..+........+...++.-. ++...+..+.. +...........-+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 7777777776665443 1 111111111111111111112222221111 11112222222 21111111111111111
Q ss_pred CcCCcchhhhHhhhcccCCCChhHHHHHHHH---HHhCCChHHHHHHHHHHHHCC-CCCC-hhhHHHHHHHhcccCChHH
Q 005732 342 PHRSIISLNTMISVIPEMERNPVTWNSMISG---YVQNNLHEKALQLYMTMRKLA-IDRT-RSTFSVLFHACSCLGSLQQ 416 (680)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~ 416 (680)
.... +.....+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++
T Consensus 284 ~~~~--------------~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 284 NELD--------------EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred cccc--------------cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 1111 0011111111111 123467889999999988764 2343 3456777777788999999
Q ss_pred HHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005732 417 GQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ 493 (680)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 493 (680)
|...++..++.. +.....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.
T Consensus 350 A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 350 ALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999988775 45566788888888999999999999987753 45778888999999999999999999999884
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHH--
Q 005732 494 DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVV-- 568 (680)
Q Consensus 494 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~-- 568 (680)
.|+ ...+..+...+.+.|++++|+..+++..... +.+...++.+..++...|++++|++.|++. ...|+ ...
T Consensus 429 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 429 --DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred --CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 454 6667778888899999999999999988643 345778888999999999999999999886 33332 111
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 569 -----WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 569 -----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+...+..+...|++++|..+++++++++|++..++..++.++.+.|++++|++.+++..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1111222334699999999999999999999888999999999999999999999998764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.1e-20 Score=189.21 Aligned_cols=298 Identities=12% Similarity=0.054 Sum_probs=227.4
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---h
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT---R 398 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~ 398 (680)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ .
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 334456677777777777777665 45566777777777777777777777777766432221 1
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC------HHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN------VAAWTAL 470 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l 470 (680)
..+..+...+...|+++.|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345666777777777777777777777654 45666777777788888888888888777653 11 1245567
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
...+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|.++++++...+.......+..++.+|.+.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 778889999999999999998843 44 567777888999999999999999999975444335678889999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh---cCCchHHHHHHHH
Q 005732 550 LHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV---LGKWGKKMDIRKR 625 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 625 (680)
+++|.+.++++ ...|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .|+.++|..++++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999987 4567777778888999999999999999999999999985 45555555443 5699999999999
Q ss_pred HhhCCCccCCce
Q 005732 626 LTHLEVKKDPGC 637 (680)
Q Consensus 626 ~~~~~~~~~~~~ 637 (680)
+.+++++++|.+
T Consensus 344 ~~~~~~~~~p~~ 355 (389)
T PRK11788 344 LVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCCCCE
Confidence 999999999974
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=9.8e-18 Score=170.43 Aligned_cols=581 Identities=13% Similarity=0.028 Sum_probs=383.6
Q ss_pred hhHHHHhhccCCC--CChhhHHHHHHHH--HcCCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCChHHHHHHH
Q 005732 34 LVTARNLFDQMPI--RTVVSWNTMLCGY--SKWAKFDESLSLVSTMHRSN--VKLNETTFSTILSVCAQLNSLIDGKQIH 107 (680)
Q Consensus 34 ~~~A~~~~~~~~~--~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 107 (680)
.+.|...|..+.+ |+-+ .-.+..|+ ...+++..|+.+|....... .+||+. ..+-.++...++.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 4677777766542 2211 12233333 33567788888887765432 233332 12223445667777777777
Q ss_pred HHHHHhCCCCcchhhhhHHHHHHcCCC---hHHHHHHHhhhc---CCchhHHHHHHHHHHhcCChhhHHHHhccCCCCC-
Q 005732 108 CLVLKSGYECFEFVGSGLLFFYANCFE---IEEAKRVFDELH---EDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKD- 180 (680)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 180 (680)
....+..+ .++.++-.|.-.-....+ +..+..++...- ..|+...+.|...|.-.|++..+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 77776653 223333222222222222 333333333322 2467777777777777888877777776655322
Q ss_pred -----eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchH
Q 005732 181 -----VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESI 255 (680)
Q Consensus 181 -----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 255 (680)
..+|-.+.+++-..|+ +++|...|.+..+....- ....+.-+...+...|+++.+...|+.+.+.. +.+..+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGD-FEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 2346667777777788 788888887776654221 13344557777888888888888888887763 444556
Q ss_pred HHHHHHHhhcCC----CHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--------CChhHHHH
Q 005732 256 GGALIEFYCGCE----AFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--------ANSISYNS 320 (680)
Q Consensus 256 ~~~li~~~~~~g----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ 320 (680)
...|...|...+ ..+.|..++.+.. +.+...|-.+...+....- ..++.+|..... +.+...|.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 666666666654 4566666666665 4444444444444444333 333555554442 66778899
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST 400 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 400 (680)
+...+...|+++.|...|......-....+.= .+..+++.+--.+..++-..++++.|.+.|..+... .|+-+.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d----e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKD----EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc----ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 99999999999999999988776510000000 000122223334556666778999999999999874 466543
Q ss_pred -HHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHH
Q 005732 401 -FSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGY 474 (680)
Q Consensus 401 -~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~ 474 (680)
|..+.......+...+|...+..+.... ..++..+..+...+.+..++..|.+-|..+.+ +|+.+.-+|.+.|
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 4444433334577888999999888775 66777777788899998888888886655442 5666666666655
Q ss_pred HH------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 475 SH------------HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 475 ~~------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
.+ .+..++|+++|.+......+ |...-+.+...++..|++.+|..+|.++.+... ....+|-.+.+
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah 688 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAH 688 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHH
Confidence 43 34567899999999885432 677778888889999999999999999996543 35567888999
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh------
Q 005732 543 LLGRSGHLHEAEEFIKDM----PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV------ 612 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~------ 612 (680)
+|...|++-.|+++|+.. ....++.+...|..++...|.+.+|.+.+..+..+.|.++...+.++.+..+
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 999999999999999976 2345788999999999999999999999999999999998887777665543
Q ss_pred -------------cCCchHHHHHHHHHhhCCC
Q 005732 613 -------------LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 613 -------------~g~~~~A~~~~~~~~~~~~ 631 (680)
.+..++|.++|.+|...+-
T Consensus 769 r~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 769 RLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2345667777777776553
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=3.4e-18 Score=186.46 Aligned_cols=391 Identities=10% Similarity=0.008 Sum_probs=209.5
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC
Q 005732 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE 267 (680)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (680)
+......|+ .++|++++.+..... |.+...+..+..++...|++++|..+++..++.. +.+...+..+..++...|
T Consensus 22 ~~ia~~~g~-~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 22 LQIALWAGQ-DAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 344444455 455555555554321 2233345555555555555555555555555442 223344444555555555
Q ss_pred CHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcC
Q 005732 268 AFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHR 344 (680)
Q Consensus 268 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 344 (680)
++++|...++++. |.+.. +..+..++...|+.++|+..++++ .+.
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a-------------------------------l~~ 145 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA-------------------------------LPR 145 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH-------------------------------HHh
Confidence 5555555555543 33333 344444444445555555555444 443
Q ss_pred CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh------hhHHHHHHHh-----cccCC
Q 005732 345 SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR------STFSVLFHAC-----SCLGS 413 (680)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~-----~~~~~ 413 (680)
. |.+...+..+..++...+..++|++.++.... .|+. ......+... ...++
T Consensus 146 ~--------------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 146 A--------------PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred C--------------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 3 33334444444444444444545444443321 1110 0001111111 11112
Q ss_pred h---HHHHHHHHHHHhc-CCCchHh-HH----HHHHHHHHhcCChHHHHHHHhcCCCCC---H-HHHHHHHHHHHHcCCh
Q 005732 414 L---QQGQLLHAHLVKT-PFESNVY-VG----TSLVDMYSRCGSINDAQASFSSISSPN---V-AAWTALMNGYSHHGLG 480 (680)
Q Consensus 414 ~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~ 480 (680)
+ ++|...++.+.+. ...|+.. .+ ...+.++...|++++|++.|+.+.+.+ + .....+..+|...|++
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~ 288 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCc
Confidence 2 4455555555533 1111111 10 011223345567777777777666421 1 1122245567777777
Q ss_pred hHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-----------CCC---hhHHHHHHHH
Q 005732 481 SEAVLLFEIMLEQDIVP---NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGV-----------VPT---LEHYTCVVDL 543 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 543 (680)
++|+.+|+++.+..... .......+..++...|++++|.++++.+..... .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 77777777766532111 123444555566777777777777777764321 122 1234456667
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
+...|++++|+++++++ ...| +...+..++..+...|+.++|+..++++++.+|+++..+..++..+...|+|++|..
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 77788888888888876 3333 566777777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCC
Q 005732 622 IRKRLTHLEV 631 (680)
Q Consensus 622 ~~~~~~~~~~ 631 (680)
+++++.+..+
T Consensus 449 ~~~~ll~~~P 458 (765)
T PRK10049 449 LTDDVVAREP 458 (765)
T ss_pred HHHHHHHhCC
Confidence 8888776543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.5e-18 Score=183.38 Aligned_cols=332 Identities=12% Similarity=-0.012 Sum_probs=187.5
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHH
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLING 293 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 293 (680)
+..-...++..+.+.|+.+.|..+++..+..... +......++.+....|++++|...|+++. |.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3444566777777888888888888887776533 33444445555556777777777776665 4444444555555
Q ss_pred HHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHH
Q 005732 294 LISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY 373 (680)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~ 373 (680)
+...|++++|...+++... .. +.+...+..+...+
T Consensus 120 l~~~g~~~~Ai~~l~~Al~-------------------------------l~--------------P~~~~a~~~la~~l 154 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWL-------------------------------AF--------------SGNSQIFALHLRTL 154 (656)
T ss_pred HHHcCCHHHHHHHHHHHHH-------------------------------hC--------------CCcHHHHHHHHHHH
Confidence 5555555555555555544 32 23334444444444
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHH
Q 005732 374 VQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQ 453 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (680)
...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+...|++++|.
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444443322 1111111111123344444444444444443321222222233344455555555555
Q ss_pred HHHhcCCC---CCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 454 ASFSSISS---PNVAAWTALMNGYSHHGLGSE----AVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 454 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+.++++.. .+...+..+...+...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++++
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55554432 234455556666666666664 67777777763 344 556666777777777777777777777
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 526 KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVV-WGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.... +.+...+..+..++.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++++..|++
T Consensus 311 l~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 311 LATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 7543 223455666777777777777777777766 34454333 3334556677788888888888888887775
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3e-17 Score=176.10 Aligned_cols=427 Identities=11% Similarity=0.010 Sum_probs=300.4
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCC--CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhc
Q 005732 153 WSLMLVGYVQCNLMSDAFDVFIKMP--KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACAR 230 (680)
Q Consensus 153 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 230 (680)
+......+.+.|++++|+..|++.. .|+...|..+..++.+.|+ +++|++.+++..+.. |.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGD-WEKVVEDTTAALELD--PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 4455666777788888888877654 4666778888888888888 899999999988765 4367788889999999
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHh
Q 005732 231 LGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRL 310 (680)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (680)
.|++++|...+..+...+- .+......++.-+........+...++.- +.....+..+ ..+...........-+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhcc
Confidence 9999999888876655431 12222222222111111122333333222 2222232222 2233222222222222221
Q ss_pred cc--CC-hhHHHHHHHH---HhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHH
Q 005732 311 TE--AN-SISYNSMIKG---YAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQ 384 (680)
Q Consensus 311 ~~--~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 384 (680)
.+ +. ...+..+... ....+++++|.+.|+.....+.. .+.....|+.+...+...|++++|+.
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-----------~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL-----------GEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 11 1112222111 13357899999999998875410 13456678888999999999999999
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 005732 385 LYMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-- 461 (680)
Q Consensus 385 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 461 (680)
.|++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+
T Consensus 353 ~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 353 DLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999874 454 4578888888999999999999999998876 66788899999999999999999999998864
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh----
Q 005732 462 -PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE---- 535 (680)
Q Consensus 462 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 535 (680)
.+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|++.|++........+..
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 45677888889999999999999999999884 454 6788888999999999999999999988654322111
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 536 --HYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 536 --~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
.++.....+...|++++|.+++++. ...|+ ...+..++..+...|++++|+..|+++.++.+....
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 1222223344579999999999986 55564 557888999999999999999999999999876433
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6e-18 Score=180.48 Aligned_cols=348 Identities=9% Similarity=-0.020 Sum_probs=280.0
Q ss_pred cCCCHHHHHHHHhhcC------CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHH
Q 005732 265 GCEAFDGAMRVYDRLE------NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSK 335 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~ 335 (680)
+..+|+.-.-.|.... ..+..-...++..+.+.|++++|+.+++.... | +...+..++.++...|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 4455555554554443 12222235667788899999999999999877 3 3446667777888899999999
Q ss_pred HHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccCCh
Q 005732 336 RLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT-RSTFSVLFHACSCLGSL 414 (680)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 414 (680)
..++++...+ |.+...+..+...+...|++++|...|+++... .|+ ...+..+...+...|++
T Consensus 97 ~~l~~~l~~~--------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 97 QVVNKLLAVN--------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred HHHHHHHHhC--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCh
Confidence 9999999877 677888999999999999999999999999874 444 56778888899999999
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMNGYSHHGLGSEAVLLFEIM 490 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 490 (680)
++|...+..+.... +.+...+..+ ..+...|++++|...++.+.+ ++...+..+..++...|++++|+..++++
T Consensus 161 ~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 161 LQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999887765 3333344333 347889999999999998764 23334455677889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005732 491 LEQDIVPNAATFVGVLSACVRAGLVNE----GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL- 564 (680)
Q Consensus 491 ~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 564 (680)
.+... .+...+..+...+...|++++ |...++++.... +.+...+..+...+.+.|++++|+..+++. ...|
T Consensus 239 l~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 239 LARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred HhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 98542 246777788899999999986 899999999754 336788899999999999999999999987 4455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
++..+..+..++...|++++|+..++++.+..|+++..+..++.++...|++++|.+.+++..+..+.
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 46677888889999999999999999999999998777777889999999999999999998876554
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.4e-18 Score=175.31 Aligned_cols=294 Identities=13% Similarity=0.048 Sum_probs=159.4
Q ss_pred HhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC---chHHHHHHHHhhcCCC
Q 005732 192 AKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFD---ESIGGALIEFYCGCEA 268 (680)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 268 (680)
...|+ +++|+..|.++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ..++..+
T Consensus 46 ~~~~~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L--------- 113 (389)
T PRK11788 46 LLNEQ-PDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL--------- 113 (389)
T ss_pred HhcCC-hHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---------
Confidence 34445 566666666666543 22444555566666666666666666665554321111 1223333
Q ss_pred HHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCC
Q 005732 269 FDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRS 345 (680)
Q Consensus 269 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 345 (680)
+..|...|++++|+..|+++.. .+..++..++..+.+.|++++|.+.++.+.+.+
T Consensus 114 ----------------------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 114 ----------------------GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred ----------------------HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 3444444444444444444433 233445555555555555555555555554433
Q ss_pred cchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 005732 346 IISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLH 421 (680)
Q Consensus 346 ~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 421 (680)
. .+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..++
T Consensus 172 ~-------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 172 G-------------DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred C-------------CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 110 1133445555666666666666666665532 122334555556666666666666666
Q ss_pred HHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 422 AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
+++.+.+......++..++.+|...|++++|.+.++++.+ |+...+..++..+.+.|++++|..+++++.+ ..|+.
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~ 315 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSL 315 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCH
Confidence 6666543222234455666666666666666666665542 4444556666666677777777777776666 35666
Q ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCChh
Q 005732 500 ATFVGVLSACVR---AGLVNEGMKIFRSMKSYGVVPTLE 535 (680)
Q Consensus 500 ~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 535 (680)
.++..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666666655543 346666777777666655555544
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.1e-16 Score=174.77 Aligned_cols=410 Identities=10% Similarity=-0.001 Sum_probs=300.2
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhccCCC-C--CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHH
Q 005732 149 NELLWSLMLVGYVQCNLMSDAFDVFIKMPK-K--DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVI 225 (680)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 225 (680)
++..-...+......|+.++|++++.+... . +...+..+...+...++ +++|.++|++..+.. |.+...+..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~--P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE--PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 444556677888899999999999998764 2 33347888888999999 999999999998864 44677788888
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHH
Q 005732 226 RACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 302 (680)
..+...|+.++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++. |.+...+..+..++...|..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 99999999999999999998874 44555 8888899999999999999999987 5555555666777777777777
Q ss_pred HHHHHHHhcc-CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCCh--
Q 005732 303 AELIFNRLTE-ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLH-- 379 (680)
Q Consensus 303 a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~-- 379 (680)
|+..++.... |+. ..-+ ....+...... .+.......+++
T Consensus 169 Al~~l~~~~~~p~~---~~~l-------~~~~~~~~~r~---------------------------~~~~~~~~~~r~~~ 211 (765)
T PRK10049 169 ALGAIDDANLTPAE---KRDL-------EADAAAELVRL---------------------------SFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHhCCCCHHH---HHHH-------HHHHHHHHHHh---------------------------hcccccChhHHHHH
Confidence 7777766655 220 0000 00000000000 000011112233
Q ss_pred -HHHHHHHHHHHHC-CCCCChh-hHHH----HHHHhcccCChHHHHHHHHHHHhcCCC-chHhHHHHHHHHHHhcCChHH
Q 005732 380 -EKALQLYMTMRKL-AIDRTRS-TFSV----LFHACSCLGSLQQGQLLHAHLVKTPFE-SNVYVGTSLVDMYSRCGSIND 451 (680)
Q Consensus 380 -~~A~~~~~~m~~~-~~~p~~~-~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 451 (680)
++|++.++.+.+. ...|+.. .+.. .+..+...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHH
Confidence 7788888888754 2233321 1111 133455779999999999999987632 222 22335778999999999
Q ss_pred HHHHHhcCCC--CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHh
Q 005732 452 AQASFSSISS--PN-----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-----------VPNA---ATFVGVLSACV 510 (680)
Q Consensus 452 A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~ 510 (680)
|+..|+++.+ |. ......+..++...|++++|..+++++.+... .|+. ..+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 9999998764 21 24566677788999999999999999987521 1232 24456677888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005732 511 RAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERA 588 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 588 (680)
..|++++|+++++++.... +.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999998654 445788899999999999999999999988 55665 66777777788899999999999
Q ss_pred HHHHHcCCCCCCch
Q 005732 589 AQKMFGLDKKPISA 602 (680)
Q Consensus 589 ~~~~~~~~p~~~~~ 602 (680)
++++++..|+++.+
T Consensus 450 ~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 450 TDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhCCCCHHH
Confidence 99999999999644
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=8e-16 Score=164.33 Aligned_cols=427 Identities=10% Similarity=0.001 Sum_probs=296.5
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCee---eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccC
Q 005732 156 MLVGYVQCNLMSDAFDVFIKMPKKDVV---VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLG 232 (680)
Q Consensus 156 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 232 (680)
-+-...+.|+++.|++.|++..+.++. ....++..+...|+ .++|+..+++.... .|........+...+...|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQSS--MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcC
Confidence 344567899999999999988743333 23378888888888 79999999998721 1112223333356788889
Q ss_pred ChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHh
Q 005732 233 AFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRL 310 (680)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (680)
++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++. .|....+..++..+...++..+|+..++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999886 3456777788899999999999999999998 344344433333333355665699999999
Q ss_pred cc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHH--HHHHHHHHh---------C
Q 005732 311 TE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTW--NSMISGYVQ---------N 376 (680)
Q Consensus 311 ~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~li~~~~~---------~ 376 (680)
.+ | +...+..+..++.+.|-...|.++..+-...- .+....+ ...+.-.++ .
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f--------------~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV--------------SAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc--------------CHHHHHHHHHHHHHHHHhhcccccccch
Confidence 88 5 45677888899999999999998888754321 1222111 011111111 1
Q ss_pred CCh---HHHHHHHHHHHHC-CCCCCh-hhH----HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 377 NLH---EKALQLYMTMRKL-AIDRTR-STF----SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 377 ~~~---~~A~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
+++ +.|+.-++.+... +..|.. ..| .-.+-++...++..++++.++.+...+.+....+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 222 3455555555441 222322 112 2244567778888889999998888886666667888888888889
Q ss_pred ChHHHHHHHhcCCCC---------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-------------CCCH-HHHHH
Q 005732 448 SINDAQASFSSISSP---------NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-------------VPNA-ATFVG 504 (680)
Q Consensus 448 ~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~ 504 (680)
++++|..+|+++..+ +......|.-++...+++++|..+++++.+... .||- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 999999888877431 233356788888888899999998888887321 1222 23344
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
++..+...|+..+|++.++++.... +-|......+.+.+...|++.+|++.++.. ...| +..+....+.+....|++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 5566778888888888888887543 457778888888888888888888888766 3455 456666777777788888
Q ss_pred HHHHHHHHHHHcCCCCCCc
Q 005732 583 EVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~ 601 (680)
.+|..+.+.+.+..|+++.
T Consensus 501 ~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 501 HQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHHHhhCCCchh
Confidence 8888888888888888853
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.1e-15 Score=161.19 Aligned_cols=431 Identities=11% Similarity=0.011 Sum_probs=285.5
Q ss_pred hhHHHHHHcCCChHHHHHHHhhhcCCchhH---HHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHH---HHHHhCCC
Q 005732 123 SGLLFFYANCFEIEEAKRVFDELHEDNELL---WSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLI---SGYAKSVD 196 (680)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~ 196 (680)
-.-+-...+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+..++ ..+...|+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 334555678888888888888887644331 237777788888888888888888776555544444 34555577
Q ss_pred ChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHH
Q 005732 197 GCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVY 276 (680)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (680)
+++|+++|+++.+.... ++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+
T Consensus 118 -yd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 118 -WDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred -HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 88888888888877643 6667777778888888888888888888765 344555544555554566666688888
Q ss_pred hhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc-CChhHHHHHHHHHhccCChhhHHHHHhhcC-------cCC
Q 005732 277 DRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE-ANSISYNSMIKGYAVYGQVDDSKRLFEKMP-------HRS 345 (680)
Q Consensus 277 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~ 345 (680)
+++. |.+...+..+..++.+.|-...|.++..+-.. -+...+..+ ..+.+.+..+... ++-
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccccchhhH
Confidence 8877 66667777888888888888888877766554 122221111 1111222221111 000
Q ss_pred cch------hhhHhhhcccCCCChhH----HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChH
Q 005732 346 IIS------LNTMISVIPEMERNPVT----WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQ 415 (680)
Q Consensus 346 ~~~------~~~l~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 415 (680)
... ...++......|+.... ..-.+.++...|++.++++.|+.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 011 11111111122222122 22344567778888888888888888776655667778888888888888
Q ss_pred HHHHHHHHHHhcC-----CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---------------C-HHHHHHHHH
Q 005732 416 QGQLLHAHLVKTP-----FESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P---------------N-VAAWTALMN 472 (680)
Q Consensus 416 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------------~-~~~~~~l~~ 472 (680)
+|..++..+.... .+++......|..+|...+++++|..+++.+.+ | | ...+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 8888888886643 123444456778888888888888888887763 1 1 123445667
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
.+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++...... +-+..+....+.++...|++.+
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 7788888888888888887743 2256777777888888888888888887766542 3345666677778888888888
Q ss_pred HHHHHHhC-CCCCCHHH
Q 005732 553 AEEFIKDM-PIELDAVV 568 (680)
Q Consensus 553 A~~~~~~~-~~~p~~~~ 568 (680)
|.++.+.+ ...|+...
T Consensus 503 A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 503 MELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhhCCCchh
Confidence 88888776 34454443
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=4e-14 Score=143.63 Aligned_cols=607 Identities=10% Similarity=0.004 Sum_probs=405.6
Q ss_pred cchhhHHHHHhhcCCChhHHHHhhccCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005732 18 IVSTNKAITECGRNGQLVTARNLFDQMPI---RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC 94 (680)
Q Consensus 18 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~ 94 (680)
+...-...+.+..+|++++|.+++.++.+ .+..+|..|...|-..|+.+++...+--.-.. .+-|..-|..+-.-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 33344444555556999999999999864 36789999999999999999998876555443 233556677777777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCch--------hHHHHHHHHHHhcCCh
Q 005732 95 AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNE--------LLWSLMLVGYVQCNLM 166 (680)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~ 166 (680)
...|.+..|.-++.+.++..++ +....-.-+..|-+.|+...|..-|.++...++ ..-..+++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 8899999999999999998743 455556678899999999999999998876443 1223345667777888
Q ss_pred hhHHHHhccCCC-----CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC---------------------CCcch
Q 005732 167 SDAFDVFIKMPK-----KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENM---------------------PNEYT 220 (680)
Q Consensus 167 ~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~---------------------p~~~~ 220 (680)
+.|.+.++.... -+...++.++..+.+... ++.+......+......+ |+...
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q-~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ-SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH-HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 999988887653 244568899999999888 899999988887611111 12222
Q ss_pred HH----HHHHHHhccCChhhHHHHHHHHHHhCC--CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--C--CccchhhHH
Q 005732 221 FD----SVIRACARLGAFCEGKVVHGLLIKCGF--EFDESIGGALIEFYCGCEAFDGAMRVYDRLE--N--PCLNASNSL 290 (680)
Q Consensus 221 ~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~~~~~l 290 (680)
|. .+.-++......+....+...+.+..+ .-+...|..+.++|...|++.+|+.+|..+. + .+...|-.+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 22 233444566666777777777777774 4456789999999999999999999999998 2 234467889
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWN 367 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 367 (680)
..+|...|.++.|.+.|+.+.. |+ ...-..|-..+.+.|+.++|.+.++.+...+..... ....+|+....-
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e-----~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE-----ACAWEPERRILA 530 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh-----hccccHHHHHHH
Confidence 9999999999999999999988 43 345666777888999999999999997754410000 000234444455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC----------------------CCCChhhHHHHHHHhcccCChHHHHHHH----
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLA----------------------IDRTRSTFSVLFHACSCLGSLQQGQLLH---- 421 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~---- 421 (680)
...+.+.+.|+.++-+..-..|.... ..-...+...++.+-.+.++......-.
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 56667788888887666555554321 1111222233333333333322211111
Q ss_pred --HHHHhcCCCchH--hHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHH----HHHHHHHHHHHcCChhHHHHHHH
Q 005732 422 --AHLVKTPFESNV--YVGTSLVDMYSRCGSINDAQASFSSISS-----PNVA----AWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 422 --~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
......++..+. ..+.-++..+++.++.++|..+...+.. .+.. .-...+.+.+..+++..|...++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111112333222 3566778888999999999999887764 1221 23445567788999999999999
Q ss_pred HHHHC-C--CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005732 489 IMLEQ-D--IVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE 563 (680)
Q Consensus 489 ~m~~~-~--~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 563 (680)
.|... + ..|. ...|+..++.+.+.++-.--.+.+..+.......++..+......+...+.+..|+..+-+. ...
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 99874 1 1233 33445455555555554444445554443332222333333345566788888888876655 344
Q ss_pred CCHHHH-HHHHHHHH----------hcCCHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 564 LDAVVW-GALLSACW----------FWMNMEVGERAAQKMFGLDKK--PISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 564 p~~~~~-~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
|+.+.. ..++.++. ++-.+-++..++.+..++... ..++++++|++|-..|-.--|..+++++++-.
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 553333 23332332 223456777788777776544 56789999999999999999999999998764
Q ss_pred Cc
Q 005732 631 VK 632 (680)
Q Consensus 631 ~~ 632 (680)
+.
T Consensus 851 p~ 852 (895)
T KOG2076|consen 851 PK 852 (895)
T ss_pred cc
Confidence 43
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.4e-12 Score=125.90 Aligned_cols=518 Identities=14% Similarity=0.085 Sum_probs=395.4
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCC---
Q 005732 101 IDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMP--- 177 (680)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 177 (680)
..-.++++..++.- +.++..| .+.+...+.++|..++....+--+ +...|.-+|++..-++.|..++++..
T Consensus 363 ~~K~RVlRKALe~i-P~sv~LW----KaAVelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 363 KNKKRVLRKALEHI-PRSVRLW----KAAVELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHHHHHhC-CchHHHH----HHHHhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344555555442 3344433 334445566667777776654211 11233445566666777777776544
Q ss_pred CCCeeeHHHHHHHHHhCCCChHHHHHHHHHH----HHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--
Q 005732 178 KKDVVVWTKLISGYAKSVDGCEKALKLFRWM----RESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEF-- 251 (680)
Q Consensus 178 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m----~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 251 (680)
..+...|-+....=-.+|+ .+....++.+- ...|+.. +...|..=...|-..|..-.+..+....+.-|+..
T Consensus 437 ptd~~IWitaa~LEE~ngn-~~mv~kii~rgl~~L~~ngv~i-~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGN-VDMVEKIIDRGLSELQANGVEI-NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhcceee-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4566677666666666777 78887777654 4567776 88888888888888898888888888888877653
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CCh-hHHHHHHHHH
Q 005732 252 DESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANS-ISYNSMIKGY 325 (680)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~ 325 (680)
-..++..-...|.+.+.++-|..+|.... +...+.|......--..|..+....+|++... |.. ..|.....-+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34678888889999999999999998877 66666667777777778999999999999887 543 3555556677
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLF 405 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 405 (680)
-..|++..|..++..+.+.+ +.+...|.+-+.....+.++++|..+|.+... ..|+...|.--+
T Consensus 595 w~agdv~~ar~il~~af~~~--------------pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~ 658 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN--------------PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSA 658 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHh
Confidence 78899999999999988876 66888999999999999999999999999877 456666666666
Q ss_pred HHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhH
Q 005732 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P-NVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 482 (680)
..-.-.++.++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|+.-.
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 66667889999999998888764 56677888889999999999999999987765 4 45578778777788889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005732 483 AVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPI 562 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (680)
|..++++..-.+.+ +...|...+..=.+.|..+.|..+..+.... .+.+...|..-|....+.++-..+...+++-.
T Consensus 738 AR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce- 814 (913)
T KOG0495|consen 738 ARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE- 814 (913)
T ss_pred HHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-
Confidence 99999999887643 6788889999999999999999999888843 45566778777777777788777777777764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIEL 642 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 642 (680)
-|+.+...+...+....++++|...|.++++.+|+...+|...-..+.+.|.-+.=.+++++..... +.-|..|.-+
T Consensus 815 -~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 815 -HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 4666777788888899999999999999999999999999999999999999888899998887643 4456667665
Q ss_pred CCeEEEE
Q 005732 643 NSRVHAF 649 (680)
Q Consensus 643 ~~~~~~~ 649 (680)
...+..+
T Consensus 892 SK~i~n~ 898 (913)
T KOG0495|consen 892 SKDIKNW 898 (913)
T ss_pred hhhHHhc
Confidence 5544443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.4e-14 Score=131.69 Aligned_cols=450 Identities=13% Similarity=0.085 Sum_probs=282.0
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh--ccCChHHH-HHHHHHHHHhCCCCcchhhhhH
Q 005732 49 VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA--QLNSLIDG-KQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 49 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 125 (680)
+.+-|+++. ...+|..+++.-+|+.|+..|+..+...-..+++..+ ....+.-| .+.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 445566655 4567789999999999999998888776555554433 22222211 122222223332 222222
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCC----CCeeeHHHHHHHHHhCCCChHHH
Q 005732 126 LFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK----KDVVVWTKLISGYAKSVDGCEKA 201 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a 201 (680)
+.|++.+ ++-+...+...++..+|.++|+--..+.|.+++++... -+..+||.+|.+..- -..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-----~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-----SVG 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-----hcc
Confidence 3454444 55566666778899999999999999999999987763 456678888776543 333
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhH----HHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHH-HHHHH
Q 005732 202 LKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEG----KVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDG-AMRVY 276 (680)
Q Consensus 202 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 276 (680)
.+++.+|.+..+.| |..|||+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++-++..+ |..++
T Consensus 258 K~Lv~EMisqkm~P-nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 KKLVAEMISQKMTP-NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHHHHHHHHhhcCC-chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 67888999888887 999999999999999977654 6778888899999999999998888887766543 33333
Q ss_pred hhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhc
Q 005732 277 DRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVI 356 (680)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 356 (680)
.++. +.+. |+ .|+-....|...|...+..|.+..+.+.|.++-.-+...+-..
T Consensus 337 ~dI~-----------N~lt--GK------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~-------- 389 (625)
T KOG4422|consen 337 NDIQ-----------NSLT--GK------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK-------- 389 (625)
T ss_pred HHHH-----------Hhhc--cC------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--------
Confidence 3322 0000 00 0000000244567777778888888888877765554422100
Q ss_pred ccCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchH
Q 005732 357 PEMERN---PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNV 433 (680)
Q Consensus 357 ~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 433 (680)
-.+++ ..-|..+....|+....+.-+.+|+.|.-.-+-|+..+...++++....+.++-.-+++..++..|.....
T Consensus 390 -~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 390 -FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred -hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 01222 23356677788888999999999999998888899999999999999999999999999999888755544
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISSPNVA---AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
.....+...+++..- .|+.. -+.....-++ ..-.+.....-.+|.+... .....+..+..+.
T Consensus 469 ~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 469 DLREEILMLLARDKL------------HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHH
Confidence 444444444443320 12111 1111111110 1111222222334444333 3344555556667
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCCChhH---HHHHHHHHHhcCChHHHHHHHHhC
Q 005732 511 RAGLVNEGMKIFRSMKSYG-VVPTLEH---YTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+.|..++|.+++..+.+.+ -.|-... ...+++.-.+......|...++-|
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7888888888887775322 2222223 335556666777777777777766
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.5e-14 Score=130.89 Aligned_cols=358 Identities=14% Similarity=0.169 Sum_probs=231.2
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 46 IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 46 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
..+..+|..||.++|+--..+.|.++|++..+..++.+..+||.+|.+..-.. .++++.+|+....+||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 34567899999999999999999999999999989999999999998765433 38899999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHhh----hcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHH
Q 005732 126 LFFYANCFEIEEAKRVFDE----LHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKA 201 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 201 (680)
+++.++.|+++.|...+-+ |.+-+ .+|...+|..+|..+.+.++....+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiG---------------------------VePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIG---------------------------VEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhC---------------------------CCcchhhHHHHHHHhcccCCchhhh
Confidence 9999999998877665544 33322 4788889999999888888743445
Q ss_pred HHHHHHHHH----c---CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCCchHHHHHHHHhhcCCCHH
Q 005732 202 LKLFRWMRE----S---GENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG----FEFDESIGGALIEFYCGCEAFD 270 (680)
Q Consensus 202 ~~~~~~m~~----~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~ 270 (680)
..++.+... . -+.|.|...|...+..|.+..+.+.|.++...+.... +.|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~---------------- 396 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH---------------- 396 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------
Confidence 555555443 1 1233456678888899999999999988887765431 112110
Q ss_pred HHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCc
Q 005732 271 GAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSI 346 (680)
Q Consensus 271 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 346 (680)
+ ...|..+....++....+.-...|+.|.. |+..+...++++..-.+.++-..+++..+...|.
T Consensus 397 -------~-----~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 397 -------R-----NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred -------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 0 01124455556666667777777777765 7777788888888888888888888877766541
Q ss_pred chhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHhcccCChHHHHHHHHH
Q 005732 347 ISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS---TFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
+++. +--.+++..|....+.|+.. -+.....-|+ ..-.+..+..-.+
T Consensus 465 ------------------t~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R 514 (625)
T KOG4422|consen 465 ------------------TFRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIR 514 (625)
T ss_pred ------------------hhhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHH
Confidence 1211 12233444444444444433 2222222111 1111111222223
Q ss_pred HHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005732 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD 494 (680)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 494 (680)
+.+.. ......+...-.+.+.|+.++|.++|.-+.+ |......-++....+.+.+.+|+..++-|...+
T Consensus 515 ~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 515 QRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33333 3344456666667777777777777765521 333333345555566666777777776665543
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.4e-14 Score=135.08 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=153.4
Q ss_pred cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005732 411 LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLF 487 (680)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 487 (680)
.|++++|...+++.....-.-....|+ +.-.+-..|++++|.+.|-++. ..+....-.+...|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 445555555555544433222222222 2233455677777777775543 356666667778888888999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005732 488 EIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 488 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 565 (680)
.+... +.|+ +..+..|...|-+.|+-..|.+++-.-.+. ++-+..+...|...|....-+++|+.+|++. -++|+
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 87766 5554 777888889999999999999887654432 5667888888999999999999999999998 48999
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCc
Q 005732 566 AVVWGALLSACW-FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKW 616 (680)
Q Consensus 566 ~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (680)
..-|..++..|. +.|++.+|..+|+......|.+...+..|++++...|..
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999988887765 599999999999999999999999999999999888853
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=8.5e-13 Score=134.19 Aligned_cols=535 Identities=12% Similarity=0.063 Sum_probs=366.8
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHH
Q 005732 59 YSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEA 138 (680)
Q Consensus 59 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 138 (680)
+.-.|+.++|.+++.+..+. .+-+...|.+|...+-..|+.+++...+-.+.-.. +.|...|..+.......|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33459999999999999887 35577889999999999999999988776655444 44668899999999999999999
Q ss_pred HHHHhhhcCCchhHH---HHHHHHHHhcCChhhHHHHhccCCCCCe----e----eHHHHHHHHHhCCCChHHHHHHHHH
Q 005732 139 KRVFDELHEDNELLW---SLMLVGYVQCNLMSDAFDVFIKMPKKDV----V----VWTKLISGYAKSVDGCEKALKLFRW 207 (680)
Q Consensus 139 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~----~~~~ll~~~~~~~~~~~~a~~~~~~ 207 (680)
.-+|.+..+.++..| -.-...|-+.|+...|.+.|.++...++ . .-..++..+...++ -+.|++.++.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~-~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE-RERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 999999887554444 3445678889999999999988764332 1 12234566777777 4899999988
Q ss_pred HHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh---------------------------CCCCCchH-HHHH
Q 005732 208 MRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC---------------------------GFEFDESI-GGAL 259 (680)
Q Consensus 208 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~l 259 (680)
....+....+...+++++..+.+...++.+......+... ++.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 8774333337778899999999999999888887777651 22333333 2222
Q ss_pred HHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHHHHHhccCCh
Q 005732 260 IEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMIKGYAVYGQV 331 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~ 331 (680)
--...+.+...+++.-|.... ...+..|..+..+|...|++.+|+.+|..+.. .+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 233344555666655554333 45556688899999999999999999999988 4567899999999999999
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH--------CCCCCChhhHHH
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK--------LAIDRTRSTFSV 403 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~~~~~ 403 (680)
+.|.+.|+.++... |.+...-..|...+-+.|++++|.+.+..+.. .+..|+......
T Consensus 466 e~A~e~y~kvl~~~--------------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA--------------PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHHhcC--------------CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 99999999999876 66777777888899999999999999998642 223444455555
Q ss_pred HHHHhcccCChHHHHHHHHHHHhcC----------------------CCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-
Q 005732 404 LFHACSCLGSLQQGQLLHAHLVKTP----------------------FESNVYVGTSLVDMYSRCGSINDAQASFSSIS- 460 (680)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 460 (680)
....+...|+.++-..+...++... .+-.......++.+-.+.++.....+-...-.
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 6667777888877555554444321 11111222233333333333333222222111
Q ss_pred -------CCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHH---HH-HHHHHHHhccCCHHHHHHHHHH
Q 005732 461 -------SPNV----AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAA---TF-VGVLSACVRAGLVNEGMKIFRS 524 (680)
Q Consensus 461 -------~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~---~~-~~ll~~~~~~g~~~~A~~~~~~ 524 (680)
..+. ..+..++.++++.+++++|+.+...+......- +.. .+ ...+.++...+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1122 234557778899999999999999888753221 111 22 3345566789999999999999
Q ss_pred HHhc-CCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 525 MKSY-GVVPT---LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 525 ~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
|... +...+ ...|+...+...+.|+-.--.+++... ...|+ +......+.-....+.+.-|...|-++....|
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p 771 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP 771 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence 9832 32222 334554555555555544444444443 22332 33333334445678899999999999999999
Q ss_pred CCCchHHHHHHHH
Q 005732 598 KPISAYVILSNIY 610 (680)
Q Consensus 598 ~~~~~~~~l~~~~ 610 (680)
++|..-..++-++
T Consensus 772 d~Pl~nl~lglaf 784 (895)
T KOG2076|consen 772 DSPLINLCLGLAF 784 (895)
T ss_pred CCcHHHHHHHHHH
Confidence 9887655555544
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.69 E-value=1.9e-12 Score=131.02 Aligned_cols=600 Identities=12% Similarity=0.070 Sum_probs=350.3
Q ss_pred hhhhcccCccchhhHHHHHhhcCCChhHHHHhhccCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 005732 9 QTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIR----TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE 84 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (680)
++..+..|+-.+|..+|.-|+..|+.+.|. +|.-|... +...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 445667899999999999999999999999 89888643 5567888998888888887776 6788
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHH-------HhCCC-Ccchh-------------hhhHHHHHHcCCChHHHHHHHh
Q 005732 85 TTFSTILSVCAQLNSLIDGKQIHCLVL-------KSGYE-CFEFV-------------GSGLLFFYANCFEIEEAKRVFD 143 (680)
Q Consensus 85 ~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~ 143 (680)
.||..++.+|+.+||+..-..+-+.+. ..|+. |.... ....+......|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998766433333232 12221 11111 1122333344455555555554
Q ss_pred hhcCC---chhHHHHHHHHHHhc-CChhhHHHHhccCC-CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCc
Q 005732 144 ELHED---NELLWSLMLVGYVQC-NLMSDAFDVFIKMP-KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNE 218 (680)
Q Consensus 144 ~~~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 218 (680)
.++-. ++... +++-+... ..+++-....+... .+++.+|..++..-.-+|+ .+.|..++.+|++.|.+. +.
T Consensus 164 ~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~-~d~Ak~ll~emke~gfpi-r~ 239 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD-VDGAKNLLYEMKEKGFPI-RA 239 (1088)
T ss_pred hCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc-hhhHHHHHHHHHHcCCCc-cc
Confidence 44311 11111 12222221 12223333333333 3888999999999999999 899999999999999887 77
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHH-----------------------
Q 005732 219 YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRV----------------------- 275 (680)
Q Consensus 219 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----------------------- 275 (680)
.-|-.++-+ .++...+..++..|.+.|+.|+..|+...+..+.++|....+...
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 767666655 788889999999999999999999998877776664432222111
Q ss_pred -HhhcC---------------CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc-------CChhHHHHHHHHHhccCChh
Q 005732 276 -YDRLE---------------NPCLNASNSLINGLISMGRIEDAELIFNRLTE-------ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 276 -~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~ 332 (680)
++.-. -+.....-.++.-...+|.-++.+++...+.. .++..|..++.-|.+.-+..
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 11000 00000111222223335666666666666655 23445666665554432211
Q ss_pred ----------------------hHHHHHhhcCcCCcchhhhHhhhcc--------cC----CCChhHHHHHHHHHHhCCC
Q 005732 333 ----------------------DSKRLFEKMPHRSIISLNTMISVIP--------EM----ERNPVTWNSMISGYVQNNL 378 (680)
Q Consensus 333 ----------------------~a~~~~~~~~~~~~~~~~~l~~~~~--------~~----~~~~~~~~~li~~~~~~~~ 378 (680)
+..++.....+... ...+.+..+ .. .+-...-+.++..+++.-+
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~--lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSF--LRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchH--HHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 11111111111000 000000000 00 0011122345555555555
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc--CCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 379 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
..+++..-++....-++ ..|..++.-++.....+.|..+.+++... .+..+..-+..+.+.+.+.+....+..++
T Consensus 475 ~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 55665444444332221 56888888888888888888888877643 23445566777888888888888888888
Q ss_pred hcCCC-----CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------------------------------CCCHH
Q 005732 457 SSISS-----PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI------------------------------VPNAA 500 (680)
Q Consensus 457 ~~~~~-----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------------------~p~~~ 500 (680)
+++.+ ++ ..++--+....+..|+.+...++++-+...|+ +|.+.
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~ 631 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPK 631 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChH
Confidence 88764 22 22334455555666666666665555544332 22222
Q ss_pred HHHHHHHH---------------------HhccCCHHHHHHHHHHH--H-hc--------C-CCC---------ChhHHH
Q 005732 501 TFVGVLSA---------------------CVRAGLVNEGMKIFRSM--K-SY--------G-VVP---------TLEHYT 538 (680)
Q Consensus 501 ~~~~ll~~---------------------~~~~g~~~~A~~~~~~~--~-~~--------~-~~~---------~~~~~~ 538 (680)
....+.+. |.+.|++..|.++.+-- . +. | +.| +.....
T Consensus 632 ~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~d 711 (1088)
T KOG4318|consen 632 DLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKND 711 (1088)
T ss_pred HHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHH
Confidence 22222221 12222222222221100 0 00 0 000 111223
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHh
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFW---MNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAV 612 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 612 (680)
.|+..|.+.|+++.|..+|.++.+.|+..+...++..+.+. -++.++....+++.+..|..+ ..|...+.+..+
T Consensus 712 RLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Confidence 47778899999999999999999889988888888877653 356667777777776665543 234455556666
Q ss_pred cCCchHHHHHHHHHhhCCCc
Q 005732 613 LGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~~ 632 (680)
-...+.|.+.+.+..++...
T Consensus 792 ~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 66666889999988887443
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=4.8e-11 Score=117.03 Aligned_cols=409 Identities=10% Similarity=-0.005 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHH----HHhCCCCCchHHHHHHHHhhcCCCHHHHH
Q 005732 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLL----IKCGFEFDESIGGALIEFYCGCEAFDGAM 273 (680)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (680)
|+.|..+++..++.- |.+...|.+....--..|+.+...++++.- ...|+..+...|..=...+-..|..-.+.
T Consensus 422 YenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 555555555555432 225555555555555555555555554432 23355555555554444454445544444
Q ss_pred HHHhhcC------CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcC
Q 005732 274 RVYDRLE------NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHR 344 (680)
Q Consensus 274 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 344 (680)
.+...+. .+...+|..-...|.+.+.++-|..+|....+ | +...|......--..|..++...+|+++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4444333 22233344444444455555555544444444 1 2223333333333344444444444444443
Q ss_pred CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHH
Q 005732 345 SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHL 424 (680)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 424 (680)
- +.....|......+...|+...|..++....+.... +...+...+..-.....++.|..+|.+.
T Consensus 580 ~--------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 580 C--------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred C--------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2 333344444444444445555555555444443211 3334444444444444455555554444
Q ss_pred HhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-
Q 005732 425 VKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNV-AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA- 500 (680)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~- 500 (680)
... .|+..+|.--+....-.++.++|.+++++..+ |+. ..|..+.+.+-+.++.+.|...|..-.+ .-|+..
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ip 720 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIP 720 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCch
Confidence 432 23333333333334444444555544444433 222 2344444444444444444444433322 223322
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 578 (680)
.|..|...=.+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|+.+.|..++.+. ..+.+...|..-+....+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 22222222233444445555554444332 223444444444444555555554444443 222233334443433333
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
.++-..+...+++. -.++......+..+....+++.|.+.|.+..+.+..
T Consensus 800 ~~rkTks~DALkkc----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 800 PQRKTKSIDALKKC----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred cccchHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 33333333322221 223456677888889999999999999998876643
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=7.7e-16 Score=148.19 Aligned_cols=258 Identities=16% Similarity=0.117 Sum_probs=114.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHH-HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSV-LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC 446 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (680)
.+...+.+.|++++|++++++......+|+...|.. +...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 557788899999999999976655443455555544 4455667899999999999999876 4466777777777 789
Q ss_pred CChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 447 GSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNAATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 447 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
+++++|.+++...-+ +++..+..++..+...++++++..+++++.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999877643 667778888899999999999999999987643 34567778888889999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 524 SMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
+..+.. +.+......++..+...|+.+++.++++... .+.|+..+..+..++...|+.++|..+++++.+..|+++.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 999764 2357788899999999999999888887762 2456677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
....++.++...|+.++|.++.+++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.2e-12 Score=122.42 Aligned_cols=434 Identities=12% Similarity=0.076 Sum_probs=285.2
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCCCCCcchH-HHHHHHHhccCChhhHHHHHHHHHHhCCCCCch----HHHHHHHHh
Q 005732 189 SGYAKSVDGCEKALKLFRWMRESGENMPNEYTF-DSVIRACARLGAFCEGKVVHGLLIKCGFEFDES----IGGALIEFY 263 (680)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~ 263 (680)
+.|..+.- ..+|+..|+-+++....| |.... ..+.+.+.+.+++.+|.+.+...+..-...+.. ..+.+.-.+
T Consensus 209 qqy~~ndm-~~ealntyeiivknkmf~-nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 209 QQYEANDM-TAEALNTYEIIVKNKMFP-NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHhhhhHH-HHHHhhhhhhhhcccccC-CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 34444445 678888888888877776 65443 335566778888999999998887764333333 334444467
Q ss_pred hcCCCHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----------------CChhHHHHH----
Q 005732 264 CGCEAFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRLTE----------------ANSISYNSM---- 321 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~l---- 321 (680)
.+.|.++.|...|+.+. .|+..+-..++-++..-|+-++..+.|.+|.. |+....+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 78999999999999877 44444334455555667888888888888875 222222221
Q ss_pred -HHHHhccCC--hhhHHHHHhhcCcCCcchhhhHhhhcc---c-CCCC------hhHHHHHHHHHHhCCChHHHHHHHHH
Q 005732 322 -IKGYAVYGQ--VDDSKRLFEKMPHRSIISLNTMISVIP---E-MERN------PVTWNSMISGYVQNNLHEKALQLYMT 388 (680)
Q Consensus 322 -l~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~~~---~-~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~ 388 (680)
++-.-+.++ .++++-.-.++...-+ ...+...+. + .+.+ ...-..-...+.+.|+++.|+++++-
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi--~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVI--APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcccc--ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 222222221 2222222222221110 000000000 0 0000 00001123357889999999999998
Q ss_pred HHHCCCCCChhhHH--HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHH
Q 005732 389 MRKLAIDRTRSTFS--VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAA 466 (680)
Q Consensus 389 m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 466 (680)
+.+..-+.-+..-+ .++..+....++..|.++-+...... .-++.....-.+.-...|++++|.+.+++....|...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 87654333222222 22333333456777777777666543 3333333333333445799999999999999877765
Q ss_pred HHHHHH---HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 467 WTALMN---GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 467 ~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
-.+|.. .+-..|+.++|+..|-++..- +.-+...+..+...|....+...|++++.+.... ++.|+.++..|.+.
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 555443 467789999999999887652 2335777778888999999999999999887754 56689999999999
Q ss_pred HHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKD-MP-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|-+.|+-..|.++.-+ .. ++.+..+...|...|....-+++++.+|+++--..|+...-...++.++.+.|+++.|.+
T Consensus 602 ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999987554 45 445788888888888888889999999999999999875555566677788999999999
Q ss_pred HHHHHhhC
Q 005732 622 IRKRLTHL 629 (680)
Q Consensus 622 ~~~~~~~~ 629 (680)
+++...++
T Consensus 682 ~yk~~hrk 689 (840)
T KOG2003|consen 682 LYKDIHRK 689 (840)
T ss_pred HHHHHHHh
Confidence 99998765
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.9e-12 Score=122.40 Aligned_cols=410 Identities=13% Similarity=0.048 Sum_probs=247.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC-chHHHHHHHH
Q 005732 185 TKLISGYAKSVDGCEKALKLFRWMRESGENMPN-EYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFD-ESIGGALIEF 262 (680)
Q Consensus 185 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 262 (680)
...-.-|.+++. +++|+++|.+.++.. | | +..|.....+|...|+|+++.+--...++.+ |+ +..+..-..+
T Consensus 119 K~~GN~~f~~kk-Y~eAIkyY~~AI~l~--p-~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 119 KTKGNKFFRNKK-YDEAIKYYTQAIELC--P-DEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred Hhhhhhhhhccc-HHHHHHHHHHHHhcC--C-CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 344456777788 899999999988765 3 6 7778888888888899988887777776653 33 2344444556
Q ss_pred hhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHH
Q 005732 263 YCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLF 338 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 338 (680)
+-..|++++|+.=..-.- -.+.++ ..++.-..+.--..++.+.+..-+. ....-.+.+..|...-..+-
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lkk~a~~ka~e~~k~nr~-p~lPS~~fi~syf~sF~~~~----- 265 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASI-EPMAERVLKKQAMKKAKEKLKENRP-PVLPSATFIASYFGSFHADP----- 265 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHHHHHHHHHHHHhhcccCC-CCCCcHHHHHHHHhhccccc-----
Confidence 666677777653221110 011111 1111111111111222222221111 11111122222221100000
Q ss_pred hhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHH----h-CCChHHHHHHHHHHHHCC-CCCChh-----------hH
Q 005732 339 EKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYV----Q-NNLHEKALQLYMTMRKLA-IDRTRS-----------TF 401 (680)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~----~-~~~~~~A~~~~~~m~~~~-~~p~~~-----------~~ 401 (680)
.... ..+.......+..++- . ...+.+|...+.+-.... ..++.. +.
T Consensus 266 ---~~~~-------------~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 266 ---KPLF-------------DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred ---cccc-------------cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 0000 0011112222222211 1 112344444433322110 111111 11
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcC
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHG 478 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 478 (680)
.....-+.-.|+.-.+..-|+..++... .+...|-.+..+|....+.++-+..|+...+ .++.+|..-.+.+.-.+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence 1111112235777788888888887763 3333366677778888999999999987764 45667777777777788
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++++|..=|++.+. +.|+ ...|..+.-+..+.+.++++...|++..+. ++--+.+|+.....+...++++.|.+.+
T Consensus 409 q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 409 QYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 89999999999988 4554 567777777777888999999999998854 5667888999999999999999999999
Q ss_pred HhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 558 KDM-PIELD---------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 558 ~~~-~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+.. ...|+ +.+..+++..-. .+++.+|+.+++++++++|....+|..|+.+..+.|+.++|+++|++-.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 876 33332 223333332222 4899999999999999999998999999999999999999999999865
Q ss_pred h
Q 005732 628 H 628 (680)
Q Consensus 628 ~ 628 (680)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 3
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.4e-12 Score=131.29 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=213.8
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH--HH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVT-WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS--VL 404 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l 404 (680)
.|+++.|++.+....+.. +++.. |.....+..+.|+++.|.+.|.++.+ ..|+..... ..
T Consensus 97 eGd~~~A~k~l~~~~~~~---------------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~ 159 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---------------EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITR 159 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHH
Confidence 688898888887755432 22333 43345555889999999999999987 445554332 34
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHH--------HHHHHHHH
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVA--------AWTALMNG 473 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--------~~~~l~~~ 473 (680)
...+...|+++.|...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+ .+.. .|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999887 77888999999999999999999999988874 1222 33344444
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
.....+.+...++++...+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~a 313 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQL 313 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHH
Confidence 44455566667777766442 2346778888999999999999999999999874 4444322 22334456999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 554 EEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 554 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+.+++. +..| |+..+..++..|...|++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 314 l~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 314 EKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987 4455 57778899999999999999999999999999997 5678999999999999999999998754
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-11 Score=115.11 Aligned_cols=289 Identities=11% Similarity=0.065 Sum_probs=195.2
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--CChh
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID--RTRS 399 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~ 399 (680)
..++....+.+++.+-.+.....|. +.+...-+....+.....++++|+.+|+++.+...- -|..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf-------------~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGF-------------PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH
Confidence 4455555667777777777666663 444444444444555677788888888888776321 1445
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSH 476 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 476 (680)
+|+.++-.-.... ...++.+-.-.--+--+.|...+.+.|+-.++.++|...|+...+ .....|+.+.+-|..
T Consensus 301 lySN~LYv~~~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 301 LYSNVLYVKNDKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE 376 (559)
T ss_pred HHhHHHHHHhhhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH
Confidence 6665554322211 111111111111134455666777788888888888888887765 334578888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
.++...|++-++++++-. +-|-..|-.|.++|.-.+.+.-|+-+|++..... +.|...|.+|..+|.+.++.++|++.
T Consensus 377 mKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred hcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHH
Confidence 888888888888888743 2256778888888888888888888888888654 44778888888888888888888888
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------CCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 557 IKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFG-------LDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 557 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
|+.. ..+.+...+..|+..+-+.++.++|..+|++-++ .+|+...+...|+.-+.+.+++++|..+..+..
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8876 2234567778888888888888888888888776 334334455567777888888888888776655
Q ss_pred hC
Q 005732 628 HL 629 (680)
Q Consensus 628 ~~ 629 (680)
.-
T Consensus 535 ~~ 536 (559)
T KOG1155|consen 535 KG 536 (559)
T ss_pred cC
Confidence 43
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.7e-11 Score=116.14 Aligned_cols=441 Identities=12% Similarity=0.036 Sum_probs=314.7
Q ss_pred CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHH
Q 005732 180 DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGAL 259 (680)
Q Consensus 180 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 259 (680)
+..-+..+++-+..+.+ +..|.-+-++....+. |+...-.+..++.-.|+.+.|..+...-.-. ..|..+....
T Consensus 15 s~~~~~~~~r~~l~q~~-y~~a~f~adkV~~l~~---dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHR-YKTALFWADKVAGLTN---DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhccC---ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 44556777777777777 8888888888876663 5555566788888888888887777654322 4577778888
Q ss_pred HHHhhcCCCHHHHHHHHhhcC---------CCc--------cch----hhH-------HHHHHHhcCCHHHHHHHHHHhc
Q 005732 260 IEFYCGCEAFDGAMRVYDRLE---------NPC--------LNA----SNS-------LINGLISMGRIEDAELIFNRLT 311 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~---------~~~--------~~~----~~~-------l~~~~~~~g~~~~a~~~~~~~~ 311 (680)
..++.+..+++.|..++.... +.+ ... -+. -...|....+.++|...|.+..
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 889999999999999998322 111 111 011 1233445556778888888877
Q ss_pred cCChhHHHHHHHHHhccC-ChhhHHHHHhh-----cCcCCcchhhhHhhhc------------------ccCCCChhHHH
Q 005732 312 EANSISYNSMIKGYAVYG-QVDDSKRLFEK-----MPHRSIISLNTMISVI------------------PEMERNPVTWN 367 (680)
Q Consensus 312 ~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~-----~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~ 367 (680)
..|...|..+...-...- -..+-..+|+. ..+.++.....+.... .+...++....
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 766666554433221110 01111222221 0000000000000000 01234455555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
.-.+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+.+.- |..+.+|-++...|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 56667778899999999999988753 5566666677778888888887777777777765 778889999999999999
Q ss_pred ChHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005732 448 SINDAQASFSSISSPN---VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRS 524 (680)
Q Consensus 448 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 524 (680)
+..+|.+.|.+...-| ...|-...++|+-.|..++|+..+..+.+.=.. ....+..+..-|.+.++.+.|.+.|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999877533 468999999999999999999999888773111 222333455568889999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 525 MKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--------IE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
..... +.|+..++-+.-.....+.+.+|..+|+..- .. --..+++.|+.+|.+.+.+++|+..+++++.+
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 98643 4578888888888888999999999998751 11 14567899999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 596 DKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|.++.++..++.+|...|+.+.|.+.+.+.+...
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999987543
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=6.2e-12 Score=127.47 Aligned_cols=285 Identities=9% Similarity=-0.021 Sum_probs=210.8
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh--hHHH
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS--TFSV 403 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ 403 (680)
...|+++.|.+.+.+..+.. +.....+-....+..+.|+++.|.+.+.+..+.. |+.. .-..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--------------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~ 158 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--------------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIA 158 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHH
Confidence 46789999999998876654 2334455566778888999999999999987643 5543 3333
Q ss_pred HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHH----HHHHHHH
Q 005732 404 LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTA----LMNGYSH 476 (680)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----l~~~~~~ 476 (680)
....+...|+++.|...++.+.+.. |.++.+...+...+...|+++.|.+.+..+.+ .+...+.. .......
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5777888999999999999999987 77788899999999999999999999988874 33333321 1112233
Q ss_pred cCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHHhcCChHH
Q 005732 477 HGLGSEAVLLFEIMLEQDI---VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV-VDLLGRSGHLHE 552 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~ 552 (680)
.+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..+......+..+ .-.....++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 3333344455555555321 126788888889999999999999999999975443322211111 122234577888
Q ss_pred HHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 553 AEEFIKDM-PIEL-DA--VVWGALLSACWFWMNMEVGERAAQ--KMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
+.+.+++. ...| |+ ....++++.|.+.|++++|.+.|+ .+++..|++ ..+.+++.++.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888876 4445 45 677899999999999999999999 578888887 45779999999999999999999986
Q ss_pred hh
Q 005732 627 TH 628 (680)
Q Consensus 627 ~~ 628 (680)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 54
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=5.3e-12 Score=127.15 Aligned_cols=255 Identities=14% Similarity=0.060 Sum_probs=165.3
Q ss_pred HhcCCHHHHHHHHHHhcc--CChhHHH--HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 295 ISMGRIEDAELIFNRLTE--ANSISYN--SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~--~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
.+.|+++.|...+.++.+ |+...+. .....+...|+++.|...++++.+.+ |.++.....+.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------------P~~~~al~ll~ 194 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--------------PRHPEVLRLAE 194 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CCCHHHHHHHH
Confidence 444555555555555444 3322221 12334455555555555555555544 44455555555
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
..|.+.|++++|.+++..+.+.+..++. ....+ ....|..++.......+.+
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l---------------------------~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML---------------------------EQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH---------------------------HHHHHHHHHHHHHHhcCHH
Confidence 5555555555555555555554322111 00000 0012223333333444566
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 005732 451 DAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 451 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 527 (680)
...++++.+.+ .++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 66677776653 57778888899999999999999999998883 4555322 23344566999999999999886
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 005732 528 YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 528 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 596 (680)
.. +-|+..+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus 323 ~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 323 QH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 54 446777888999999999999999999988 678999999999999999999999999999998754
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.3e-11 Score=112.72 Aligned_cols=356 Identities=15% Similarity=0.116 Sum_probs=179.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHH--HHHH
Q 005732 149 NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFD--SVIR 226 (680)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~ 226 (680)
|.+.+-.....+-+.|..+.|.+.|.+....-+..|.+-+....--.+ .+.+.. ... |... |...+. .+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-~e~~~~----l~~-~l~~-~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-IEILSI----LVV-GLPS-DMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-HHHHHH----HHh-cCcc-cchHHHHHHHHH
Confidence 333334444455667888888888877665555555554443322222 222211 111 1111 211111 2334
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHH
Q 005732 227 ACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELI 306 (680)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 306 (680)
++......+++.+-.......|++.+...-+....+.-...|+++|+.+|+++.+.++--.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------------------- 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-------------------
Confidence 4555567777777777777777776666655555666667777777777777762222110
Q ss_pred HHHhccCChhHHHHHHHHHhccCChh-hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHH
Q 005732 307 FNRLTEANSISYNSMIKGYAVYGQVD-DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQL 385 (680)
Q Consensus 307 ~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 385 (680)
.|..+|+.++-.-....... .|..++. +- +--+.|...+..-|.-.++.++|...
T Consensus 297 ------~dmdlySN~LYv~~~~skLs~LA~~v~~-id-----------------KyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 297 ------DDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID-----------------KYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred ------hhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc-----------------cCCccceeeehhHHHHHHhHHHHHHH
Confidence 12223333322211111111 1111111 00 11223334444444445555555555
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 005732 386 YMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--- 461 (680)
Q Consensus 386 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 461 (680)
|++..+.+ |. ...|+.+.+-|....+...|.+.++.+++.. |-|-..|..|.++|...+...-|.-.|++...
T Consensus 353 FkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 353 FKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 55554422 22 2234444444444555555555555554444 55666666666666666666666666665542
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----cCCCCC--hh
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS----YGVVPT--LE 535 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~ 535 (680)
.|...|.+|..+|.+.++.++|++-|.+....|- .+...+..|...+-+.++.++|...|++.++ .|...+ ..
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 4566666666666666666677776666666542 2456666666666666666666666665552 122211 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
...-|..-+.+.+++++|..+..
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHH
Confidence 11223344555566666555443
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.8e-10 Score=104.61 Aligned_cols=144 Identities=17% Similarity=0.090 Sum_probs=69.8
Q ss_pred HcCCChHHHHHHHhhhcC---CchhHHHHHHHHHHhcCChhhHHHHhccCCC----CCeeeHHHHHHHHHhCCCChHHHH
Q 005732 130 ANCFEIEEAKRVFDELHE---DNELLWSLMLVGYVQCNLMSDAFDVFIKMPK----KDVVVWTKLISGYAKSVDGCEKAL 202 (680)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~ 202 (680)
...+++..|..+|+.... .+...|...+..-+++..+..|..++++... -|..-|. .+..=-.-|+ ...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgN-i~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGN-IAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcc-cHHHH
Confidence 334455555555555543 2344455555555555555555555554331 1211111 1111112234 45555
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q 005732 203 KLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 203 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (680)
++|++-.+-. | +...+.+.|+.-.+-..++.|..+++..+-- .|++..|-.....-.++|....|..+|....
T Consensus 162 qiferW~~w~--P-~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 162 QIFERWMEWE--P-DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHcCC--C-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555554432 2 5555555555555555555555555555432 3555555555555555555555555555443
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.1e-11 Score=111.92 Aligned_cols=426 Identities=12% Similarity=0.105 Sum_probs=306.9
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAEL 305 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 305 (680)
...+++..|..+|+..+... ..+...|...+.+-.++..+..|..++++.. |.....|...+..=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35567778888888887765 4567778888888888888889998888876 3333333444555556788999999
Q ss_pred HHHHhcc--CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHH
Q 005732 306 IFNRLTE--ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKAL 383 (680)
Q Consensus 306 ~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 383 (680)
+|++-.+ |+..+|.+.++.=.+-+.++.|..++++..-. .|++.+|--....-.++|....|.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---------------HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---------------HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---------------cccHHHHHHHHHHHHhcCcHHHHH
Confidence 9988877 89999999999989999999999999887653 578888888888888899999999
Q ss_pred HHHHHHHHCCCCCChh----hHHHHHHHhcccCChHHHHHHHHHHHhcCCCch--HhHHHHHHHHHHhcCChHHHHHHH-
Q 005732 384 QLYMTMRKLAIDRTRS----TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESN--VYVGTSLVDMYSRCGSINDAQASF- 456 (680)
Q Consensus 384 ~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~- 456 (680)
.+|....+. -.|.. .+.++..--.+...++.|.-+++-.++.- +.+ ...|..+...--+-|+........
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 998887652 12222 33333333345667788888888887763 222 455555555555566655544433
Q ss_pred -------hcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--H---HHHHH--HHH---hccCCHH
Q 005732 457 -------SSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA--T---FVGVL--SAC---VRAGLVN 516 (680)
Q Consensus 457 -------~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~---~~~ll--~~~---~~~g~~~ 516 (680)
+...+ -|-.+|--.++.-...|+.+...++|++++.. ++|-.. . |..|- -+| ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 22222 35567777777777789999999999999874 455321 1 11111 111 3578899
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHH----HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMKSYGVVPTLEHYTCVVDL----LGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
.+.++++...+ -++....+|..+--. ..++.++..|.+++-.. |.-|-..++...+..-.+.++++....+|++
T Consensus 384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999887 345555666544333 34788999999999876 7889999999888888899999999999999
Q ss_pred HHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHH
Q 005732 592 MFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTA 671 (680)
Q Consensus 592 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (680)
.++-.|.+-.+|...+.+-...|+++.|..+++-..++...--|..-| ..-..|.-..+.+...+.+|+.|...+.
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999888764322222111 1113466666788889999998888777
Q ss_pred HhhhcccC
Q 005732 672 NLNSVVLF 679 (680)
Q Consensus 672 ~~~~~~~~ 679 (680)
-.+.=|+|
T Consensus 539 h~kvWisF 546 (677)
T KOG1915|consen 539 HVKVWISF 546 (677)
T ss_pred cchHHHhH
Confidence 66655554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2e-12 Score=127.47 Aligned_cols=280 Identities=12% Similarity=0.073 Sum_probs=217.0
Q ss_pred ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCChhhHHHHHHH
Q 005732 330 QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAI--DRTRSTFSVLFHA 407 (680)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~ 407 (680)
+..+|...|.++...- ..+......+..+|...+++++|.++|+.+.+... .-+..+|.+.+..
T Consensus 334 ~~~~A~~~~~klp~h~--------------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWH 399 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--------------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWH 399 (638)
T ss_pred HHHHHHHHHHhhHHhc--------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 5678888888844432 33445566788899999999999999999987431 1244567777765
Q ss_pred hcccCChHHHHHHH-HHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCChhHH
Q 005732 408 CSCLGSLQQGQLLH-AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSP---NVAAWTALMNGYSHHGLGSEA 483 (680)
Q Consensus 408 ~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 483 (680)
+-+ +-+...+ +.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+. ...+|+.+.+-+.....+|.|
T Consensus 400 Lq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 400 LQD----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred HHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhH
Confidence 432 1222222 3333443 778899999999999999999999999998863 456888888888899999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005732 484 VLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P 561 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 561 (680)
...|+..+. +.|+ -..|..+...|.+.++++.|.-.|+++.+.++. +....-.+...+.+.|+.++|+.+++++ .
T Consensus 475 ~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 475 MKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 999999876 4444 456667788899999999999999999875532 4556667788899999999999999998 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 562 IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 562 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..| |+..-..-+..+...+++++|+..++++.++-|++...+..++.+|.+.|+.+.|+.-+.-+.+..+
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 333 5555555666677889999999999999999999999999999999999999999988877766543
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.3e-12 Score=128.69 Aligned_cols=247 Identities=15% Similarity=0.108 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcC--CCchHhHHHHHHHHHHhcCChHHHHH
Q 005732 377 NLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP--FESNVYVGTSLVDMYSRCGSINDAQA 454 (680)
Q Consensus 377 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (680)
-+..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+.. .-.+...|.+.+--+-+.=...---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999985443 33444667778899999999999999999998763 12355666665543322111111111
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 455 SFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 455 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
-+-......+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+....++|.|...|+.... .+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 12222246688999999999999999999999999999 667 578888888888889999999999998874 34
Q ss_pred hhHHH---HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 534 LEHYT---CVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 534 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
+..|+ .|...|.+.++++.|+-.|+++ .+.| +......++..+.+.|+.++|++++++++-++|.++..-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 44554 5677899999999999999998 6677 56677778888899999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++...+++++|+..++++++.-
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=1.5e-08 Score=99.80 Aligned_cols=586 Identities=13% Similarity=0.121 Sum_probs=355.4
Q ss_pred hhhhcccCccchhhHHHHHhhcCCChhHHHHhhccCC---CCChhhHHHHHHHHHc---CC-----C-------hhHHHH
Q 005732 9 QTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMP---IRTVVSWNTMLCGYSK---WA-----K-------FDESLS 70 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~---~~-----~-------~~~a~~ 70 (680)
..++.++-++-+|-.-|..-...- ..+-.-+|++.. ..+...|...|..-.. .. . ++.++.
T Consensus 18 eEilRnp~svk~W~RYIe~k~~sp-~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv 96 (835)
T KOG2047|consen 18 EEILRNPFSVKCWLRYIEHKAGSP-DKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLV 96 (835)
T ss_pred HHHHcCchhHHHHHHHHHHHccCC-hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Confidence 345666777777777777655421 234444555432 2244455555522111 10 1 222222
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCc
Q 005732 71 LVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKS-GYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149 (680)
Q Consensus 71 ~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 149 (680)
.+.+|. ..+..-++.+...|+.....+.++..+.. .++.-..+|...+......|-++.+.+++....+-+
T Consensus 97 ~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~ 168 (835)
T KOG2047|consen 97 FMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA 168 (835)
T ss_pred HHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 222222 23455555666778888888888777654 455566778888888888888899999999998888
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCC----------CeeeHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCCCC
Q 005732 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKK----------DVVVWTKLISGYAKSVDGCEK---ALKLFRWMRESGENMP 216 (680)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~~~~~~~---a~~~~~~m~~~~~~~p 216 (680)
+..-+..|..+++.+++++|.+.+...... +-..|+.+-....++.+ .-. .-.+++.+... .+
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~-~~~slnvdaiiR~gi~r--ft- 244 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD-KVQSLNVDAIIRGGIRR--FT- 244 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc-hhcccCHHHHHHhhccc--Cc-
Confidence 888888999999999999999888876532 33456666666666533 111 22233333221 11
Q ss_pred Cc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC----------------------CHHHH
Q 005732 217 NE--YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE----------------------AFDGA 272 (680)
Q Consensus 217 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A 272 (680)
|. ..+.+|..-|.+.|.++.|..++++.+..- .+..-+..+.+.|+... +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 32 457888889999999999999998887763 33444444444443321 12223
Q ss_pred HHHHhhcCC------------CccchhhH-HHHHHHhcCCHHHHHHHHHHhcc---C------ChhHHHHHHHHHhccCC
Q 005732 273 MRVYDRLEN------------PCLNASNS-LINGLISMGRIEDAELIFNRLTE---A------NSISYNSMIKGYAVYGQ 330 (680)
Q Consensus 273 ~~~~~~~~~------------~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~ll~~~~~~~~ 330 (680)
+.-|+.+.. .++..... +-+.-+..|+..+-...+.+... | -...|..+.+.|-..|+
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333333320 11100000 11112234556666666666654 2 12368888999999999
Q ss_pred hhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--------------
Q 005732 331 VDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR-------------- 396 (680)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-------------- 396 (680)
.+.|..+|++..+...... ..-..+|..-...-.++.+++.|+++++......-.|
T Consensus 403 l~~aRvifeka~~V~y~~v----------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTV----------EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHHHHHhhcCCccch----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 9999999999988553110 1113456666677778889999999988875422111
Q ss_pred ---ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCH-HHHH
Q 005732 397 ---TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNV-AAWT 468 (680)
Q Consensus 397 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~ 468 (680)
+...|...+..-...|-++....+++.+++..+.....+.| ....+-...-++++.+++++-.. |++ ..|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 12234444555556678888999999999887543333322 23334455668899999998775 554 3676
Q ss_pred HHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHhcCCCC--ChhHHHHHH
Q 005732 469 ALMNGYSH---HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC--VRAGLVNEGMKIFRSMKSYGVVP--TLEHYTCVV 541 (680)
Q Consensus 469 ~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 541 (680)
.-+.-+.+ ....+.|..+|++..+ |+.|...-+..|+-+- .+-|-...|+.+++++... +++ -...|+.+|
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I 629 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 65554433 3467999999999999 6777643333333222 3458888999999997743 222 245677766
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHcC-CCC-CCchHHHHHHHHHhcCC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIELDAVVWGA---LLSACWFWMNMEVGERAAQKMFGL-DKK-PISAYVILSNIYAVLGK 615 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~ 615 (680)
.-....=-.....+++++. ..-|+...-.. ....-.+.|.+++|..+|...-+. +|. ++..|...-..-.+.|+
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 5544332333344445444 23344433322 233345789999999999988775 555 45667787778888898
Q ss_pred chHHHHH
Q 005732 616 WGKKMDI 622 (680)
Q Consensus 616 ~~~A~~~ 622 (680)
-+.-.+.
T Consensus 710 edT~keM 716 (835)
T KOG2047|consen 710 EDTYKEM 716 (835)
T ss_pred HHHHHHH
Confidence 4443333
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=6.5e-11 Score=120.05 Aligned_cols=221 Identities=14% Similarity=0.015 Sum_probs=144.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHH-------HHHHH
Q 005732 370 ISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGT-------SLVDM 442 (680)
Q Consensus 370 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~ 442 (680)
...+...|+++.|.+.++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+...... .++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555555666666655555543 1233345555555555666666666665555554322222111 11111
Q ss_pred HHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHH
Q 005732 443 YSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATF---VGVLSACVRAGLVN 516 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~ 516 (680)
-......+...+.++.... .++..+..+...+...|++++|.+++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1112223444455555543 47788888999999999999999999999984 4554321 11222234467888
Q ss_pred HHHHHHHHHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMKSYGVVPTL--EHYTCVVDLLGRSGHLHEAEEFIKD--M-PIELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
.+.+.+++..+.. +-++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999998888543 3344 6677899999999999999999994 3 5789999899999999999999999999998
Q ss_pred HHc
Q 005732 592 MFG 594 (680)
Q Consensus 592 ~~~ 594 (680)
.+.
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 765
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=8.1e-14 Score=134.15 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=56.4
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC
Q 005732 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE 267 (680)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (680)
...+.+.|+ +++|++++.+.......|.|...+..+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~-~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGD-YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344445555 56666666443332212213333344444445555666666666666554422 34444444444 4555
Q ss_pred CHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc-----CChhHHHHHHHHHhccCChhhHHHHHhh
Q 005732 268 AFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRLTE-----ANSISYNSMIKGYAVYGQVDDSKRLFEK 340 (680)
Q Consensus 268 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 340 (680)
++++|.+++...- .+++..+...+..+...++++++..+++.+.. .+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554432 22333334444444444555444444444332 2233344444444444444444444444
Q ss_pred cCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHH
Q 005732 341 MPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLL 420 (680)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 420 (680)
..+.+ |.|....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...
T Consensus 172 al~~~--------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 172 ALELD--------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHH---------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHcC--------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence 44433 3334444444444444444444444444443322 22233333444444444444444444
Q ss_pred HHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 421 HAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
++...+.. +.|+.....+..++...|+.++|.++.
T Consensus 237 ~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 237 LEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred cccccccc-ccccccccccccccccccccccccccc
Confidence 44444433 334444444444444444444444443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.1e-11 Score=113.87 Aligned_cols=500 Identities=12% Similarity=0.054 Sum_probs=250.5
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMPI--RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILS 92 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~ 92 (680)
+.+..-+..+.+-+..+.++..|.-+-+++.. .|...---+.+++.-.|++++|..++..-.-. +.|..+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34455556666666666666666666555531 22222223466677777777777776654322 335556666666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcC-C---ChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhh
Q 005732 93 VCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANC-F---EIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSD 168 (680)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g---~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (680)
.+.+..++++|..++... .+.-+++.+ |.+. + ..+.+.+ +.+..-....+-.-.+.|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~---~~~~~~f~y------y~~~~~~~l~~n~~~~--~~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRG---HVETNPFSY------YEKDAANTLELNSAGE--DLMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhccc---chhhcchhh------cchhhhceeccCcccc--cccccchhceeeeeeehhhhhccHHH
Confidence 666667777776666522 000011111 0000 0 0000100 00000011112222234555666777
Q ss_pred HHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005732 169 AFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG 248 (680)
Q Consensus 169 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 248 (680)
|...+.+....|+..|..+.......--..++-.++|..+--.-....+......+.........-+.....-+.-.-.+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhh
Confidence 77777766666666555544333222111223333333210000000022222222222211110011111111111123
Q ss_pred CCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CC-hhHHHHHH
Q 005732 249 FEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--AN-SISYNSMI 322 (680)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll 322 (680)
...+........+-+...+++.+..++++.+. |....++..-|.++...|+..+-..+=.++.+ |+ ..+|-.+.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34455566666666777778888888877766 66666666667777777776666666666655 33 44677777
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
-.|...|+.++|.+.|.+...-+ +.-...|-.....|+-.|..++|+..+...-+.= +-...-+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD--------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~L 384 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD--------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSL 384 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC--------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHH
Confidence 66666677777777777766554 3445567777777777777777777666654421 11111122
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 482 (680)
-+.--|.+.++.+.|.++|.+..... |.|+.+.+-+.-..-..+.+.+|..+|
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f-------------------------- 437 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYF-------------------------- 437 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHH--------------------------
Confidence 22333445555666666665555544 445555555544444445555555544
Q ss_pred HHHHHHHHHHC----C-CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 483 AVLLFEIMLEQ----D-IV-PNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 483 A~~~~~~m~~~----~-~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
+..... + -+ --..+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+++.|.+.
T Consensus 438 -----~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 438 -----QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred -----HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 433310 0 00 123445555566666666666666666665432 33555666666666666666666666
Q ss_pred HHhC-CCCCCHHHHHHHHHH
Q 005732 557 IKDM-PIELDAVVWGALLSA 575 (680)
Q Consensus 557 ~~~~-~~~p~~~~~~~l~~~ 575 (680)
|.+. .+.|+..+...++..
T Consensus 512 fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHhcCCccHHHHHHHHH
Confidence 6655 455655554444443
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2e-10 Score=104.47 Aligned_cols=442 Identities=12% Similarity=0.060 Sum_probs=240.0
Q ss_pred eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHH
Q 005732 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALI 260 (680)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (680)
...+-.|.....--|. +.+|..+.... |.++-.-..+++..-+.++-++.....+.+.+. .....+|.
T Consensus 91 ~el~vnLAcc~FyLg~-Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLA 158 (557)
T KOG3785|consen 91 AELGVNLACCKFYLGQ-YIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLA 158 (557)
T ss_pred cccchhHHHHHHHHHH-HHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHH
Confidence 3333333333333344 56665554332 113344444555555666666666666555432 23334455
Q ss_pred HHhhcCCCHHHHHHHHhhcC--CCccchhh-HHHHHHHhcCCHHHHHHHHHHhcc--CChh-HHHHHHHHHhccCChhhH
Q 005732 261 EFYCGCEAFDGAMRVYDRLE--NPCLNASN-SLINGLISMGRIEDAELIFNRLTE--ANSI-SYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a 334 (680)
......-++.+|.+++.++. .+.....| -+.-+|.+..-++-+.+++.-... ||+. +.|.......+.-.-..|
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchh
Confidence 55555566777777777776 22222222 244556666666766666666554 4433 233333223332222222
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQN-----NLHEKALQLYMTMRKLAIDRTRSTFSVLFHACS 409 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 409 (680)
+.-.+.+...+. . .| ..+.-++++ ..-+.|++++-.+.+ +-|. .-..++-.|.
T Consensus 239 e~E~k~ladN~~--------------~---~~-~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL 296 (557)
T KOG3785|consen 239 EDEKKELADNID--------------Q---EY-PFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYL 296 (557)
T ss_pred HHHHHHHHhccc--------------c---cc-hhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeec
Confidence 222222222110 0 01 112222222 234566666555443 1121 2223444566
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHH-----HHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCC
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSL-----VDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 479 (680)
+.++..+|..+.+.+.-. .|-......+ .+-......+.-|.+.|+-.-+ .++....++..++.-..+
T Consensus 297 ~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 297 NQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred ccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 677777776666554211 1211111111 1111222234556666654432 223344556666677777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005732 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (680)
+++.+..+.....--...|...+ .+..+.+..|.+.+|.++|-++....++.+......|..+|.+.+..+-|.+++-+
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 88888888877764333333333 46788888899999999998877555554444445667888899999999999888
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcee
Q 005732 560 MPIELDAVVWGALL-SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCS 638 (680)
Q Consensus 560 ~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (680)
+..+.+..+...++ .-|.+.+.+--|-..|+.+-.++|.+ +.| .|+.....-++..+-.....+.|+-
T Consensus 454 ~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~~- 522 (557)
T KOG3785|consen 454 TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANHKTDPIPIS- 522 (557)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcCCCCCCchh-
Confidence 86444555554444 46888888888888888888888876 444 4566666667766665544444442
Q ss_pred EEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 639 WIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
++..+++.... ..|..++.+...++.|....+
T Consensus 523 --~~rEVvhllr~--~~nsq~E~mikvvrkwa~~~~ 554 (557)
T KOG3785|consen 523 --QMREVVHLLRM--KPNSQCEFMIKVVRKWAETHN 554 (557)
T ss_pred --HHHHHHHHHHh--CCCchHHHHHHHHHHHHHhcC
Confidence 33444443322 257777888888888776544
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=2.3e-10 Score=116.29 Aligned_cols=508 Identities=12% Similarity=0.068 Sum_probs=284.8
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 46 IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 46 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
.||.+||..+|.-||..|+.+.|- +|..|.-...+-+...|+.++.+....++.+.++ .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 688899999999999999999999 9999998888888999999999999999987776 7889999999
Q ss_pred HHHHHcCCChHH---HHHHHhhhcC---------Cch-------------hHHHHHHHHHHhcCChhhHHHHhccCCCC-
Q 005732 126 LFFYANCFEIEE---AKRVFDELHE---------DNE-------------LLWSLMLVGYVQCNLMSDAFDVFIKMPKK- 179 (680)
Q Consensus 126 ~~~~~~~g~~~~---a~~~~~~~~~---------~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 179 (680)
..+|.+.||... +.+.+..+.. +.. ..-...+.-..-.|-++.+++++..++..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 3332322221 000 01233455566678888889988877732
Q ss_pred -CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHH
Q 005732 180 -DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA 258 (680)
Q Consensus 180 -~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (680)
+. +....++-+.....++++-..+-....+ .| ++.+|..++......|+.+.|..++..|.+.|++.+..-+..
T Consensus 170 ~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~-~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 170 WNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---AP-TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred ccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CC-ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 21 2222355555554434554444444433 34 999999999999999999999999999999999999998888
Q ss_pred HHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 259 LIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
|+-+ .++...+..+++.|. .|+..++......+..+|....+... .+....+..-+..-.-.| ..|
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a 314 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLA 314 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHh
Confidence 8765 677777777777776 67777777766666665552222111 133333333333322233 222
Q ss_pred HHHHhhcCcCCcc--hhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCC-ChhhHHHHHHHhc
Q 005732 335 KRLFEKMPHRSII--SLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLA--IDR-TRSTFSVLFHACS 409 (680)
Q Consensus 335 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p-~~~~~~~ll~~~~ 409 (680)
.+.++.-...-+. +...++ .+.......|...+. ...+|+.+...++-..|..-- ..+ +...|..++.-|.
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fL---lg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFL---LGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHH---hccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 2222111110000 000000 001112233332222 233677777766666664311 122 1223433333332
Q ss_pred ccCChHHHHHHHH--HHHhc--CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------CCHHHHHHH
Q 005732 410 CLGSLQQGQLLHA--HLVKT--PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---------------PNVAAWTAL 470 (680)
Q Consensus 410 ~~~~~~~a~~~~~--~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~l 470 (680)
+.-.......++. +.+.. +....+. +.....+. +...+.+-+..+.. +-...-+.+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~----vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPR----VSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHH----HHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 2211111111111 11110 0000000 11111110 11111111111110 111122344
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH--hcCCCCChhHHHHHHHHHHhcC
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK--SYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g 548 (680)
+..++..-+..+++..-++.... ..| ..|..|+.-+...+..+.|..+..+.. +..+..|...+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 44555555555555443333321 112 456777777777777777777777776 3345556666777777888888
Q ss_pred ChHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 549 HLHEAEEFIKDMP----IELD-AVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 549 ~~~~A~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
...++.++++++. ..|+ ..++.-++...+..|+.+...+..+-+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 8888888777772 3332 333344444455566666655555544
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2e-10 Score=109.11 Aligned_cols=424 Identities=13% Similarity=0.011 Sum_probs=256.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCC--CCC-eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHh
Q 005732 153 WSLMLVGYVQCNLMSDAFDVFIKMP--KKD-VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACA 229 (680)
Q Consensus 153 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 229 (680)
+-....-|.++|++++|++.+.+.. .|| ++.|...-..|...|+ |+++.+.-.+..+.+ |.-...+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd-~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD-WEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh-HHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 3344556778888888888888765 466 6778888888888888 899888887777654 312344444555666
Q ss_pred ccCChhhHHHHHHHHHHh-CCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHH
Q 005732 230 RLGAFCEGKVVHGLLIKC-GFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFN 308 (680)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 308 (680)
..|++.++..-..-..-. |+. +..+ ..+++--.+.--...+.+-+.+-.+|..+. ...+..|...=..+--.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~---- 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKP---- 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccc----
Confidence 677777665333222111 111 1111 111111111111122333333212333333 44444443221100000
Q ss_pred HhccCChhHHHHHHHHHhc-----cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC------hhHHHHHHHHHHhCC
Q 005732 309 RLTEANSISYNSMIKGYAV-----YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN------PVTWNSMISGYVQNN 377 (680)
Q Consensus 309 ~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~li~~~~~~~ 377 (680)
.+..+.......+..++.. ...+..+...+.+-....... .+....| ..+.......+.-.|
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~-------~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS-------LSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh-------ccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 0000111111111111110 012222222222211100000 0000011 112222222344578
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
+.-.|.+-|+..+.....++.. |-.+...|....+.++....|....+.+ +.++.+|..-.+++.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998855433332 7777888999999999999999999887 7778888888888889999999999999
Q ss_pred cCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--
Q 005732 458 SISSP---NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-- 531 (680)
Q Consensus 458 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-- 531 (680)
+..+. +...|-.+.-+..+.+++++++..|++.+++ -|+ +..|+.....+...++++.|.+.|+...+....
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 98863 3456666666677888999999999999985 354 788999999999999999999999998854322
Q ss_pred ---CC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 532 ---PT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 532 ---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.+ +.+...++..- =.+++..|++++.+. .+.| ....+..+...-...|+.++|+++|++...+-..
T Consensus 497 ~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred cccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11 22222222222 248999999999988 5666 5778899999999999999999999998776543
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.2e-11 Score=108.40 Aligned_cols=293 Identities=11% Similarity=0.048 Sum_probs=230.0
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh---hhHHHH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR---STFSVL 404 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l 404 (680)
+.+.++|..+|-+|.+.+ +.+..+.-+|.+.|-+.|..++|+.+-+.+.++.-.+.. .....+
T Consensus 48 s~Q~dKAvdlF~e~l~~d--------------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--------------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred hcCcchHHHHHHHHHhcC--------------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 567899999999998876 566777888999999999999999999998764322211 234456
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------HHHHHHHHHHHHH
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN--------VAAWTALMNGYSH 476 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~ 476 (680)
..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+.+ ...|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 677888999999999999999876 4555667889999999999999999988766422 2355666677777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
..+.+.|..++.+..+.+.+ ....-..+.......|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88999999999999985432 23334456677889999999999999999888777788889999999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh--cCCchHHHHHHHHHhhCCCcc
Q 005732 557 IKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV--LGKWGKKMDIRKRLTHLEVKK 633 (680)
Q Consensus 557 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~ 633 (680)
+.++ ...+.+.....+........-.+.|...+.+-+...|.-...+..+..-+.. .|++.+.+.+++.|....++.
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 9887 5566666666666666666778888888888888899864444444444433 467999999999999888887
Q ss_pred CCc
Q 005732 634 DPG 636 (680)
Q Consensus 634 ~~~ 636 (680)
.|.
T Consensus 352 ~~~ 354 (389)
T COG2956 352 KPR 354 (389)
T ss_pred cCC
Confidence 774
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.7e-10 Score=107.17 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=223.0
Q ss_pred ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005732 327 VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406 (680)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 406 (680)
..|++..|+++..+..+.+ +.....|..-+.+--+.|+.+.+-.++.+..+..-.++.........
T Consensus 96 ~eG~~~qAEkl~~rnae~~--------------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG--------------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC--------------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 4689999999999877766 44566777777788889999999999999987543555566667777
Q ss_pred HhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----------CHHHHHHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSP-----------NVAAWTALMNGYS 475 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~ 475 (680)
.....|+.+.|..-..++.+.+ +-++.+.....++|.+.|++.....++.++.+. ...+|+.+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999988 778888999999999999999999999988751 1346777777666
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005732 476 HHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEE 555 (680)
Q Consensus 476 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 555 (680)
..+..+.-...|+..... .+-++..-.+++.-+.+.|+.++|.++.++..+.+..|....+ -.+.+-++.+.-++
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k 315 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIK 315 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHH
Confidence 666666656667665543 3445666677788889999999999999999988877762221 23445566665555
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 556 FIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 556 ~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+.. . .+.++..+.+|+..|.+++.|.+|..+++.+++..|+. ..|..++.++.+.|+..+|.++.++...
T Consensus 316 ~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 316 AAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55544 2 23356888999999999999999999999999999986 8899999999999999999999988763
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=2.4e-08 Score=98.44 Aligned_cols=508 Identities=12% Similarity=0.095 Sum_probs=261.3
Q ss_pred chhhHHHHHhhcCCChhHHHHhhccCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 005732 19 VSTNKAITECGRNGQLVTARNLFDQMP-----IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSV 93 (680)
Q Consensus 19 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~ 93 (680)
..|-.-++.+.++|++-.-++.|+... ..-...|...+.-....+-++-+..+|++..+. ++..-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 445555666666666666666665432 113345555555555566666666666665542 22224444445
Q ss_pred HhccCChHHHHHHHHHHHHhC------CCCcchhhhhHHHHHHcCCCh---HHHHHHHhhhcCC--c--hhHHHHHHHHH
Q 005732 94 CAQLNSLIDGKQIHCLVLKSG------YECFEFVGSGLLFFYANCFEI---EEAKRVFDELHED--N--ELLWSLMLVGY 160 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~l~~~~ 160 (680)
++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....++..+..+ | ...|.+|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 555566666665555554321 233344444444444443221 1223333333321 1 23466666666
Q ss_pred HhcCChhhHHHHhccCCCC--CeeeHHHHHHHHHhC----------------CC-----ChHHHHHHHHHHHHcCCC---
Q 005732 161 VQCNLMSDAFDVFIKMPKK--DVVVWTKLISGYAKS----------------VD-----GCEKALKLFRWMRESGEN--- 214 (680)
Q Consensus 161 ~~~~~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~----------------~~-----~~~~a~~~~~~m~~~~~~--- 214 (680)
++.|.++.|.+++++.... .+.-|..+..+|++- ++ +++-.+.-|+.+......
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 6666666666666654321 222233333322221 10 012222223333222110
Q ss_pred -------CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC------CchHHHHHHHHhhcCCCHHHHHHHHhhcCC
Q 005732 215 -------MPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEF------DESIGGALIEFYCGCEAFDGAMRVYDRLEN 281 (680)
Q Consensus 215 -------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 281 (680)
|.+..++..-.. ...|+..+....+.++.+. +.| -...|..+.+.|-..|+++.|..+|++...
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 012222222111 1234444555555555543 111 123566777777778888888888877762
Q ss_pred CccchhhHHHHHH-------HhcCCHHHHHHHHHHhcc-C--------------------ChhHHHHHHHHHhccCChhh
Q 005732 282 PCLNASNSLINGL-------ISMGRIEDAELIFNRLTE-A--------------------NSISYNSMIKGYAVYGQVDD 333 (680)
Q Consensus 282 ~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~-~--------------------~~~~~~~ll~~~~~~~~~~~ 333 (680)
..-..-..+...+ .+..+++.|+.+++.... | +...|...++.--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 2222223333333 345566777776666554 2 22344555555556677777
Q ss_pred HHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhc---
Q 005732 334 SKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACS--- 409 (680)
Q Consensus 334 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~--- 409 (680)
...+++++....+. ++..-....-.+-.+.-++++.++|++-...=..|+.. .|+..+.-+.
T Consensus 496 tk~vYdriidLria--------------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA--------------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHHHHhcC--------------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 88888888776652 22222222222344556778887776654432234432 3444333332
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHH--HHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCChhH
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLV--DMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 482 (680)
.....+.|..+|++..+ |++|...-+--|+ ..--+-|....|++++++... .-...||..|.-....=.+..
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 23467888999998888 6565433222221 112234777788888887663 223467777765544444566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCCh
Q 005732 483 AVLLFEIMLEQDIVPNAATFVGVLS---ACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
...+|++.++ .-|+...-...+. .=.+.|..+.|..++.... -..+..+...|.+.=..=.+.|+-
T Consensus 641 TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 641 TREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred cHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 6777888877 4566554443333 2356788888888887666 334455666677666666677773
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=3.2e-10 Score=105.44 Aligned_cols=276 Identities=12% Similarity=0.085 Sum_probs=165.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHH
Q 005732 194 SVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAM 273 (680)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (680)
.|+ |..|.++..+-.+.+..| ...|..-..+.-..|+.+.+-..+.++.+..-.++..+.-+........|+++.|.
T Consensus 97 eG~-~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGD-FQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCc-HHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 366 788888887777766543 44566666667777888888888887776643555666666777777777777777
Q ss_pred HHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----C-------ChhHHHHHHHHHhccCChhhHHHHHh
Q 005732 274 RVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE----A-------NSISYNSMIKGYAVYGQVDDSKRLFE 339 (680)
Q Consensus 274 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~~ll~~~~~~~~~~~a~~~~~ 339 (680)
.-++++. +..+........+|.+.|++.....++..+.+ . ...+|..+++-....+..+.-...++
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 7766655 45555556666777777777777777777765 1 12356666666666666666555666
Q ss_pred hcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHH
Q 005732 340 KMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQL 419 (680)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 419 (680)
.....- ..++..-..++.-+.+.|+.++|.++..+..+.+..|+ ....-.+.+.++...-++
T Consensus 254 ~~pr~l--------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k 315 (400)
T COG3071 254 NQPRKL--------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIK 315 (400)
T ss_pred hccHHh--------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHH
Confidence 554432 34455566667777777777777777777776665555 122223445555555555
Q ss_pred HHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005732 420 LHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIML 491 (680)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 491 (680)
..+.-.+.. +.++..+.+|...|.+.+.+.+|.+.|+...+ |+..+|+.+..++.+.|+..+|.+..++..
T Consensus 316 ~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 316 AAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 554444432 33334555555555555555555555544332 444555555555555555555554444443
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.4e-10 Score=104.43 Aligned_cols=226 Identities=14% Similarity=0.085 Sum_probs=124.5
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-C--chHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEF-D--ESIGGAL 259 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l 259 (680)
.|-.=++.+.. .+ .++|.++|-+|.+.... +..+-.+|.+.+.+.|..+.|..++..+.++.--+ + ....-.|
T Consensus 38 ~Yv~GlNfLLs-~Q-~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLLS-NQ-PDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHhh-cC-cchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34444444444 45 69999999999885432 56666788899999999999999999887752111 1 1223345
Q ss_pred HHHhhcCCCHHHHHHHHhhcCC-C--ccchhhHHHHHHHhcCCHHHHHHHHHHhccCChh--------HHHHHHHHHhcc
Q 005732 260 IEFYCGCEAFDGAMRVYDRLEN-P--CLNASNSLINGLISMGRIEDAELIFNRLTEANSI--------SYNSMIKGYAVY 328 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~ll~~~~~~ 328 (680)
..-|...|-+|.|+.+|..+.. + .......++..|....+|++|++.-+++...+.. .|..+...+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 5556666666777766666651 1 2233445556666666666666655555441111 233333344444
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAC 408 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 408 (680)
.+++.|..++.+..+.+ +..+..--.+.+.+...|++++|.+.++...+.+..--+.+...+..+|
T Consensus 194 ~~~d~A~~~l~kAlqa~--------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 194 SDVDRARELLKKALQAD--------------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred hhHHHHHHHHHHHHhhC--------------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 45555555555555544 3344444444455555555555555555555444333333444444444
Q ss_pred cccCChHHHHHHHHHHHh
Q 005732 409 SCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~ 426 (680)
...|+.++....+..+.+
T Consensus 260 ~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 260 AQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=7.9e-09 Score=104.14 Aligned_cols=505 Identities=12% Similarity=0.048 Sum_probs=288.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCcchhh-----hhHHHHHHcC
Q 005732 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA---QLNSLIDGKQIHCLVLKSGYECFEFVG-----SGLLFFYANC 132 (680)
Q Consensus 61 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~ 132 (680)
..++.+.++.-+......+...+..++..+-.++. -.++.+.+ ++-..++.-.-|...++ ..++.-+.+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777776655543 34555555 33333333333322222 2222222222
Q ss_pred CChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCC---CeeeHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005732 133 FEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKK---DVVVWTKLISGYAKSVDGCEKALKLFRWMR 209 (680)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 209 (680)
+++. -++..|..+.-++...|++..+.+.|++...- ....|+.+-..+...|. -..|+.+++.-.
T Consensus 317 ~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 317 KKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESL 384 (799)
T ss_pred hhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhc
Confidence 2222 24455666677788888888888888876542 34467777777777777 488888888776
Q ss_pred HcCCCCCCcchHHHHHHHHh-ccCChhhHHHHHHHHHHh--CC--CCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCcc
Q 005732 210 ESGENMPNEYTFDSVIRACA-RLGAFCEGKVVHGLLIKC--GF--EFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCL 284 (680)
Q Consensus 210 ~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 284 (680)
.....|+|...+...-..|. +.+..+++...-..++.. +. ......|..+.-+|...-. ..+..
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~-----------~a~~~ 453 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR-----------QANLK 453 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh-----------cCCCh
Confidence 65545656666666666665 445666666655555442 11 1122233333333321100 00000
Q ss_pred chhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCC
Q 005732 285 NASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMER 361 (680)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (680)
+ .+.....++++.+++..+ .|+.....+.--|+..++.+.|.+..++..+.+. ..
T Consensus 454 s---------eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------------~~ 511 (799)
T KOG4162|consen 454 S---------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-------------GD 511 (799)
T ss_pred H---------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------------Cc
Confidence 0 011123445556666544 2333333344456667777788777777777642 56
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGTSLV 440 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 440 (680)
+...|..+.-.+...+++.+|+.+.+.....- .-|......-++.-...++.+++......+...-- .+..
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~------- 583 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV------- 583 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH-------
Confidence 77778877777778888888888777665421 11111111112222235566666555554443200 0000
Q ss_pred HHHHhcCChHHHHHHHhcCC---C---CCHHHHHHHHHHHH-H--cCChhHHHHHHHHHHHCCCC--CC------HHHHH
Q 005732 441 DMYSRCGSINDAQASFSSIS---S---PNVAAWTALMNGYS-H--HGLGSEAVLLFEIMLEQDIV--PN------AATFV 503 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~---~---~~~~~~~~l~~~~~-~--~~~~~~A~~~~~~m~~~~~~--p~------~~~~~ 503 (680)
...++-....+....+. + ....++..+..-.. + .-..+.. +....+. |+ ...|.
T Consensus 584 ---q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 584 ---QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred ---hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHH
Confidence 01111222222222221 1 11222222221111 1 1111111 1111122 22 12344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN 581 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 581 (680)
.....+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|... .+.| ++.+..+++..+...|+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45556777888888888877777542 345667777778888999999999988876 5666 57788999999999998
Q ss_pred HHHHHH--HHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 582 MEVGER--AAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 582 ~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
-..|.. ++..+++.+|.++++|+.+|.++.+.|+.+.|.+.|....+..
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 888888 9999999999999999999999999999999999998877643
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.6e-10 Score=108.76 Aligned_cols=198 Identities=13% Similarity=0.084 Sum_probs=162.6
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
.....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. ..+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677778888888999999988887653 346677888888999999999999999998854 224567777888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEV 584 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 584 (680)
.+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 88999999999999999985432 233556777888899999999999999987 3334 56778888889999999999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
|...++++++..|.++..+..++.++...|++++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888889999999999999999998887654
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=7.4e-08 Score=99.56 Aligned_cols=372 Identities=13% Similarity=0.132 Sum_probs=222.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHH
Q 005732 223 SVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (680)
-+..-+-+.+++..-...++..+..|. -|..++++|...|..+++-.+- .+++ +.-.=.....-||...++.-
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCCce
Confidence 344445556666677777788888884 4888999999998876543321 1111 11110222333444443333
Q ss_pred HHHHHHHhcc--------CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHH
Q 005732 303 AELIFNRLTE--------ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYV 374 (680)
Q Consensus 303 a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~ 374 (680)
|.-.|++-.- .....|....+.+.+..+.+.-.+++.+--...-......++.--....|+..-...+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 3222222111 11223455555555555555444443221110000011111111122445666677788999
Q ss_pred hCCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-----------------------
Q 005732 375 QNNLHEKALQLYMTMRKLAI--DRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF----------------------- 429 (680)
Q Consensus 375 ~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 429 (680)
..+-+.+-+++++++.-..- .-+...-+.++-...+ .+..++.++.+++-....
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh
Confidence 99999999999999864321 1111222222222222 222333333333322210
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
..+....+.|++ .-+.++.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+. -|+..|..++...
T Consensus 1075 ~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a 1143 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVA 1143 (1666)
T ss_pred cccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHH
Confidence 112222222221 2234444444444443 3457999999999999999998876442 2677899999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
.+.|.|++..+++...++..-+|... +.|+-+|++.+++.+-++++. .|+......++.-|...|.++.|.-+|
T Consensus 1144 ~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999999999888766666554 478899999999988777653 588888889999999999999999888
Q ss_pred HHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 590 QKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
... +.|..|+..+...|.++.|.+.-++.-
T Consensus 1218 ~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1218 SNV--------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHh--------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 654 568889999999999998887765543
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4e-11 Score=107.70 Aligned_cols=222 Identities=11% Similarity=0.018 Sum_probs=152.2
Q ss_pred HHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHH-HHHHHHHHHHcCChhH
Q 005732 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAA-WTALMNGYSHHGLGSE 482 (680)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~ 482 (680)
.+|.+.|.+.+|+..++...+. .|-+.+|-.|-.+|.+..+++.|..++.+..+ |-.++ ...+.+.+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 3333444444444444433333 23333444444555555555555555554442 32222 2334555666677778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005732 483 AVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-- 560 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 560 (680)
|.++|+...+.. ..+.....++...|.-.++++.|..+++++...|+. ++..|..+.-+|.-.++++-++.-|++.
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 888888777743 224555666666777778888888888888877754 6677777777777788888887777765
Q ss_pred -CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 561 -PIEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 561 -~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
...| -..+|..+.......||+..|.+.|+-++..+|++.+++++|+.+-.+.|+.++|..++....+..+
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 1223 3677888888888899999999999999999999999999999999999999999999999887654
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.3e-08 Score=92.30 Aligned_cols=269 Identities=11% Similarity=-0.018 Sum_probs=180.2
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 313 ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 313 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.|......+.+.+...|+.++|+..|++..-.+ +-+........-.+.+.|+.+....+...+...
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--------------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--------------PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--------------hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 345556666666777777777777777666544 222222233333345566666666665555432
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHH
Q 005732 393 AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTA 469 (680)
Q Consensus 393 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 469 (680)
. .-+...|..-........+++.|..+-+..++.. +.+...+-.-...+...|+.+.|.-.|..... .+..+|..
T Consensus 296 ~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 296 V-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred h-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 1 1122222223333345566677777766666554 34444444455667778888888888876653 46778999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-hccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVL-SAC-VRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGR 546 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 546 (680)
|+.+|...|++.+|..+-+..... +.-+..+...+. ..| .....-++|.+++++-.+. .|+ ....+.+...+..
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHh
Confidence 999999999999988877766553 233455555442 222 2334457888888877753 333 4556777888999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 547 SGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.|..++++.++++. ...||....+.|+..+...+.+.+|...|..+++++|++.
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999987 6789999999999999999999999999999999999983
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.9e-08 Score=89.90 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=62.2
Q ss_pred cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CHHHHH-HHHHHHHHcCChhHHHHH
Q 005732 411 LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSP---NVAAWT-ALMNGYSHHGLGSEAVLL 486 (680)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~A~~~ 486 (680)
..+++++.-++..+...-...|...+| +.++++..|.+.+|+++|-.+..| |..+|. .|.++|.+.+.++.|..+
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555555555544443333333333 556666666777777766666543 233443 345566666766666554
Q ss_pred HHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHhcCCCCChhHH
Q 005732 487 FEIMLEQDIVPNAATFVGV-LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
+-++ +-..+..+...+ ..-|.+.+.+--|.+.|+.+... .|++..|
T Consensus 451 ~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 451 MLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 4332 212233333333 34566666666666666666653 3444444
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=2e-09 Score=113.63 Aligned_cols=263 Identities=10% Similarity=0.016 Sum_probs=189.8
Q ss_pred CCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhc---------ccCChHHHHHHHHHH
Q 005732 360 ERNPVTWNSMISGYVQ-----NNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACS---------CLGSLQQGQLLHAHL 424 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~ 424 (680)
+.+...|...+.+... .+.+++|.+.|++..+. .|+.. .+..+..++. ..++.++|...++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3455556666555322 23467999999999874 45543 4444433332 335588999999999
Q ss_pred HhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-H
Q 005732 425 VKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA-A 500 (680)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~ 500 (680)
.+.. +.+...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|+..++++.+. .|+. .
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~ 407 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAA 407 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChh
Confidence 9887 77888888899999999999999999998764 3 4667888899999999999999999999984 4553 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVV-WGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~ 578 (680)
.+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++ +..|+... .+.+...+..
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 333444456678999999999999886543335666778888999999999999999987 44555443 4445555566
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.| ++|...++++++..-..+.....+..+|.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4777777777664433322333477777778888877776 8877654
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=3.2e-07 Score=90.96 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=46.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
++..+-..|+++.|..+++..+.+ .|+ ..-|..-.+.+.+.|++++|..++++..+.+ .+|..+-...+.-..++.
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 445555566666666666665553 343 2333334455556666666666666655433 233333334444555566
Q ss_pred ChHHHHHHHHhC
Q 005732 549 HLHEAEEFIKDM 560 (680)
Q Consensus 549 ~~~~A~~~~~~~ 560 (680)
+.++|.++....
T Consensus 454 ~i~eA~~~~skF 465 (700)
T KOG1156|consen 454 EIEEAEEVLSKF 465 (700)
T ss_pred ccHHHHHHHHHh
Confidence 666666555444
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=3.9e-07 Score=91.23 Aligned_cols=267 Identities=13% Similarity=0.093 Sum_probs=175.2
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
+.+......|.+|+.+++.+..+.. -..-|..+.+.|...|+++.|.++|.+.- .+
T Consensus 739 ieaai~akew~kai~ildniqdqk~---------------~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~ 794 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT---------------ASGYYGEIADHYANKGDFEIAEELFTEAD---------LF 794 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc---------------ccccchHHHHHhccchhHHHHHHHHHhcc---------hh
Confidence 4445566778888888887776542 23457777788888888888888876531 34
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 481 (680)
+-.|..|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcch
Confidence 556777888888888877755442 3344555566666666778888888888888777774 466788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP 561 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (680)
+.+++.++-.-. --..|...+..-+...|+...|.+-|-+.-+ |.+-++.|...+.|++|.++-+.-+
T Consensus 868 dmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 868 DMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 888877664321 1245666777788888999998887765442 4455677888888888888776653
Q ss_pred CCCCHHHHHHHH-----------HHHHh-------------cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 562 IELDAVVWGALL-----------SACWF-------------WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 562 ~~p~~~~~~~l~-----------~~~~~-------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
- .+..-....+ ..+-+ .+.++-|..+-+-+.+ ...+..+..++..+...|+++
T Consensus 936 g-~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 936 G-ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred c-ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchh
Confidence 1 1111111111 11222 3344444444333322 233567888899999999999
Q ss_pred HHHHHHHHHhhCCCccC
Q 005732 618 KKMDIRKRLTHLEVKKD 634 (680)
Q Consensus 618 ~A~~~~~~~~~~~~~~~ 634 (680)
+|.+.+-+..+.+.-+.
T Consensus 1013 daskhyveaiklntyni 1029 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred hhhHhhHHHhhcccccc
Confidence 99999888777654443
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-07 Score=93.18 Aligned_cols=465 Identities=11% Similarity=0.073 Sum_probs=220.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHH--hcCChhh
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYV--QCNLMSD 168 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 168 (680)
++-+...+++++|.+....++..+ +.+...+..-+.+....+.+++|+.+.+.-..........+=++|| +.++.|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 344556677777777777777766 4455555666667777788888886665443221111111345555 5788888
Q ss_pred HHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005732 169 AFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG 248 (680)
Q Consensus 169 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 248 (680)
|+..++-..+.+..+...-...+.+.++ +++|+++|+.+.+++..--+...-..++.+-.. ... +.+....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~ 168 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVP 168 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhcc
Confidence 8888885555555566666777888888 899999999998766432111111112211111 011 1122222
Q ss_pred CCCCchHHHHHH---HHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCCh-hHHHHHHHH
Q 005732 249 FEFDESIGGALI---EFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANS-ISYNSMIKG 324 (680)
Q Consensus 249 ~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ll~~ 324 (680)
..| ..+|..+- -.+...|++.+|+++++... .+..--...++.. -+.+- ... ..-.-+.-.
T Consensus 169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~--------~~~~e~l~~~d~~-eEeie-----~el~~IrvQlayV 233 (652)
T KOG2376|consen 169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKAL--------RICREKLEDEDTN-EEEIE-----EELNPIRVQLAYV 233 (652)
T ss_pred CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH--------HHHHHhhcccccc-hhhHH-----HHHHHHHHHHHHH
Confidence 222 23343332 23445666666666665441 0000000000000 00000 000 011122233
Q ss_pred HhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh----HHHHHHHHHHhCCChH-HHHHHHHHHHHCCCCCChh
Q 005732 325 YAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV----TWNSMISGYVQNNLHE-KALQLYMTMRKLAIDRTRS 399 (680)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~ 399 (680)
+...|+..+|..++....+.+ ++|.. .-|.++..-....-++ .++..++.....
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~--------------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~------- 292 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN--------------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK------- 292 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc--------------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH-------
Confidence 445556666666555555544 22221 1122211111111011 111111111100
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-HHHHHHHHHHH--HH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN-VAAWTALMNGY--SH 476 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~ 476 (680)
-+......+.... ......-+.++.+| .+..+.+.+.-..+.... ...+.+++... ++
T Consensus 293 ----------------l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 293 ----------------LAEFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVR 353 (652)
T ss_pred ----------------hHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH
Confidence 0000000000000 01111112233333 244455555555554321 22333333322 22
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR--------SMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
...+..|.+++...-+....-........+......|+++.|.+++. .+.+.+..| .+...+...+.+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIK 431 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhcc
Confidence 22466677777666654322123344445555667788888888777 444444333 34445566666666
Q ss_pred ChHHHHHHHHhC-----CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 549 HLHEAEEFIKDM-----PIELDAVVWGA----LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 549 ~~~~A~~~~~~~-----~~~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
+-+.|..++.+. ...+....... +...-.+.|+.++|..+++++++..|++......++.+|.+.. .+.|
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka 510 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKA 510 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHH
Confidence 666565555543 11122222222 2223345688888888888888888888777777777776653 3445
Q ss_pred HHHH
Q 005732 620 MDIR 623 (680)
Q Consensus 620 ~~~~ 623 (680)
..+-
T Consensus 511 ~~l~ 514 (652)
T KOG2376|consen 511 ESLS 514 (652)
T ss_pred HHHh
Confidence 5543
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.4e-11 Score=82.37 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 005732 47 RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ 96 (680)
Q Consensus 47 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~ 96 (680)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=103.82 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=200.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc
Q 005732 367 NSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC 446 (680)
Q Consensus 367 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (680)
+.+..+|.+.|.+.+|...|+...+. .|-+.||..+-.+|.+..+++.|..++.+-.+.- +.++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999998874 5777899999999999999999999999988764 66666666778888899
Q ss_pred CChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 447 GSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 447 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
++.++|.++++...+ .++....++...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.++++.++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998875 45667777778889999999999999999999976 78889999999999999999999999
Q ss_pred HHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 524 SMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 524 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+....--.|+ ..+|-.+.......|++.-|.+.|+-. ...| +...++.|...-.+.|++++|..++..+....|+-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9985433333 567878888888999999999999976 3333 57889999988889999999999999999999986
Q ss_pred CchHHHH
Q 005732 600 ISAYVIL 606 (680)
Q Consensus 600 ~~~~~~l 606 (680)
.+...++
T Consensus 463 ~E~~~Nl 469 (478)
T KOG1129|consen 463 AEVTTNL 469 (478)
T ss_pred cccccce
Confidence 5544443
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=1.2e-07 Score=94.03 Aligned_cols=434 Identities=13% Similarity=0.071 Sum_probs=287.0
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEF 262 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 262 (680)
.|..++..|- .++ +...++..+.+.+.. |....|.....-.+...|+.++|........... ..+...|..+.-.
T Consensus 10 lF~~~lk~yE-~kQ-YkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQ-YKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH-HHH-HHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence 3444555443 356 788888888887743 2256666666666778899999988887777654 3466788888888
Q ss_pred hhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHH
Q 005732 263 YCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKR 336 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~ 336 (680)
+....++++|.+.|+... +++...+..+...-.+.++++.....-....+ | ....|..+..++.-.|+...|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999877 77777777777777788888888777777766 3 33467888888888999999999
Q ss_pred HHhhcCcCCcchhhhHhhhcccCCCChhHHHHH------HHHHHhCCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHhc
Q 005732 337 LFEKMPHRSIISLNTMISVIPEMERNPVTWNSM------ISGYVQNNLHEKALQLYMTMRKLAIDRTRST-FSVLFHACS 409 (680)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~ 409 (680)
+++...+.... .++...|.-. .......|..++|++.+..-... ..|... -..-...+.
T Consensus 165 il~ef~~t~~~------------~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 165 ILEEFEKTQNT------------SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHhhcc------------CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHH
Confidence 98887775421 3444444332 23456688888888887765432 122222 223345567
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHH-HHHhcCCC-------CCHHHHHHHHHHHHHcCChh
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQ-ASFSSISS-------PNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~ 481 (680)
+.++.++|..++..++... |.+...|-.+..++.+-.+.-++. .+|....+ |-....+.+. ...-.+
T Consensus 231 kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~ 305 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKE 305 (700)
T ss_pred HHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHH
Confidence 8899999999999999886 555555555666665433333343 66655543 1111111111 112223
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH----HHHHHHhcC----------CCCChhHH--HHHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK----IFRSMKSYG----------VVPTLEHY--TCVVDLLG 545 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~----~~~~~~~~~----------~~~~~~~~--~~l~~~~~ 545 (680)
..-+++..+.+.|+.+-...+.++ |-.....+-..+ +...+...| -+|....| -.++..+-
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 445566777777766533333332 222111111111 111111111 14454444 35677788
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005732 546 RSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
+.|+++.|..+++.. +..|+ +..|..-...+.+.|+.++|..+++++.+++-.+...-...+.-..++++.++|.++.
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 999999999999987 66776 4556667788899999999999999999999887555557888899999999999999
Q ss_pred HHHhhCCCc-----cCCceeEEEEC
Q 005732 624 KRLTHLEVK-----KDPGCSWIELN 643 (680)
Q Consensus 624 ~~~~~~~~~-----~~~~~~~~~~~ 643 (680)
.+..+.|.. .+--|.|.+++
T Consensus 463 skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 463 SKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHhhhcccchhhhHHHhhhHHHhHh
Confidence 999887742 12246666654
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=3.9e-09 Score=105.77 Aligned_cols=230 Identities=18% Similarity=0.180 Sum_probs=166.0
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhc-----C-CCchHh-HHHHHHHHHHhcCChHHHHHHHhcCCC----------
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKT-----P-FESNVY-VGTSLVDMYSRCGSINDAQASFSSISS---------- 461 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 461 (680)
.+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555677777777777777777766653 1 122222 233467778888888888888877652
Q ss_pred CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CC
Q 005732 462 PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-----DIV-PN-AATFVGVLSACVRAGLVNEGMKIFRSMKSY---GV 530 (680)
Q Consensus 462 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~~~-p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~ 530 (680)
|. ..+++.|..+|.+.|++++|...+++..+- |.. |. ..-++.+...|...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 346777778888999998888887776541 222 22 234566677788899999999998877621 12
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--
Q 005732 531 VPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM---------PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFG-- 594 (680)
Q Consensus 531 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 594 (680)
.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++++|.++|.++..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999876 1223 256678889999999999999999988755
Q ss_pred --CCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 595 --LDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 595 --~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..|+++ .+|..|+.+|.+.|++++|.++.+++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345554 4588999999999999999999988774
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.9e-09 Score=92.78 Aligned_cols=163 Identities=15% Similarity=0.055 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
+...|.-.|.+.|++..|..-+++.++. .|+ ..++..+...|-+.|+.+.|.+.|++..+.. +-+-.+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3445667788888888888888888884 454 6677778888888888888888888888654 23567778888888
Q ss_pred HhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHH
Q 005732 545 GRSGHLHEAEEFIKDMPIEL----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (680)
|..|++++|...|++.-..| -..+|..++.+..+.|+.+.|...|+++++++|+.+.....++..+...|++.+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88889999998888873333 36678888888888999999999999999999998888889999999999999999
Q ss_pred HHHHHHhhCCC
Q 005732 621 DIRKRLTHLEV 631 (680)
Q Consensus 621 ~~~~~~~~~~~ 631 (680)
-.+++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 98888876654
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=2.2e-09 Score=113.30 Aligned_cols=212 Identities=12% Similarity=0.007 Sum_probs=167.6
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh---------cCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCC
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR---------CGSINDAQASFSSISS---PNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 479 (680)
++.++|...+++..+.. +.+...+..+..++.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999999876 5556666666665542 2447899999988774 467788888889999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005732 480 GSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
+++|+..|+++.+. .|+ ...+..+...+...|++++|...+++..+..+.+ ...+..++..+...|++++|.+.++
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999994 465 6677888889999999999999999999765442 2233334455677899999999998
Q ss_pred hC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 559 DM--PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 559 ~~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+. ...| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87 2245 45557778888889999999999999998888888777888888888888 4888888887764
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.5e-06 Score=86.80 Aligned_cols=358 Identities=11% Similarity=0.031 Sum_probs=224.6
Q ss_pred hhhHhhhhcc-cCccchhhHHHH--HhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhC-C-
Q 005732 5 ATQSQTLMTQ-ETLIVSTNKAIT--ECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRS-N- 79 (680)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~- 79 (680)
++.++.+.+. .=|..+-..++. .|.-.|+.+.|.+-.+-++ +-..|..|.+.|.++++.+-|.-.+-.|... |
T Consensus 712 ~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 712 AKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred hhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3455555544 345556666665 5777899999888766554 4457999999999999999998888777532 1
Q ss_pred -------CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC-chh
Q 005732 80 -------VKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED-NEL 151 (680)
Q Consensus 80 -------~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 151 (680)
-.|+ .+=.-+.-.....|.+++|+.+|+.-.+.. .|=..|-..|.|++|.++-+.-..- -..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~ 859 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRN 859 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhh
Confidence 1121 222222222346789999999999877653 3445777889999999988754332 234
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhcc
Q 005732 152 LWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARL 231 (680)
Q Consensus 152 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 231 (680)
+|-.....+-..++++.|++.|++...+--..+..|.. + +.....+.+++. |...|.--...+-..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e------~-p~~~e~Yv~~~~-------d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE------Y-PKQIEQYVRRKR-------DESLYSWWGQYLESV 925 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh------C-hHHHHHHHHhcc-------chHHHHHHHHHHhcc
Confidence 67777788888899999999998766543333322221 1 233333333332 556677777777788
Q ss_pred CChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhc
Q 005732 232 GAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLT 311 (680)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (680)
|+.+.|+.++..... |-++++..|-.|+.++|-.+-++- .+......+.+-|-..|++.+|..+|.+..
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999988877643 456777888889999888887764 344455677888888899999988887765
Q ss_pred cCChhHHHHHHHHHhccC---------------ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhC
Q 005732 312 EANSISYNSMIKGYAVYG---------------QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQN 376 (680)
Q Consensus 312 ~~~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~ 376 (680)
. +...|+.|-..+ +.-.|.+.|++.-. -+...+-.|-+.
T Consensus 995 a-----fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~---------------------~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 995 A-----FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG---------------------YAHKAVMLYHKA 1048 (1416)
T ss_pred H-----HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---------------------hhhHHHHHHHhh
Confidence 3 333333332222 22333344443211 112223346777
Q ss_pred CChHHHHHHHH--------HHHHCCC--CCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 005732 377 NLHEKALQLYM--------TMRKLAI--DRTRSTFSVLFHACSCLGSLQQGQLLHAHLV 425 (680)
Q Consensus 377 ~~~~~A~~~~~--------~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 425 (680)
|.+.+|+++-= +++..++ ..|+...+....-++...++++|..++-..+
T Consensus 1049 Gm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1049 GMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred cchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77777776421 1222222 2345556666666667777777766665443
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=6.4e-08 Score=98.53 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHhcC-CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 576 CWFWM-NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 576 ~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+.... =.++|..+++-+.+..|++..+|..-..+|.+.|++--|++.+++
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 478999999999999999999999999999999999999887764
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.4e-07 Score=86.67 Aligned_cols=294 Identities=12% Similarity=0.015 Sum_probs=185.0
Q ss_pred CcchHHHHHHHHhc--cCChhhHHHHHHHHHHh-CCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHH
Q 005732 217 NEYTFDSVIRACAR--LGAFCEGKVVHGLLIKC-GFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSL 290 (680)
Q Consensus 217 ~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 290 (680)
+..+...-+.+++. .++...+...+-.+... -++-++.....+.+.+...|+.++|...|++.. +..+......
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Y 272 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLY 272 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHH
Confidence 44455555555443 23333333333333222 245567778888888888888888888888876 3333333444
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCC---hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTEAN---SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWN 367 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 367 (680)
...+.+.|+.+....+...+...+ ...|-.-+......++++.|..+-++..+.+ +.+...|-
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--------------~r~~~ali 338 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--------------PRNHEALI 338 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------------cccchHHH
Confidence 555667788877777777666533 2234444444556777888888888777766 56666776
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH-HHHH-
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV-DMYS- 444 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~- 444 (680)
.-...+...|++++|.-.|+..+. +.| +...|.-++.+|...|++.+|...-+...+.- +.+..+...+. ..+.
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFP 415 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeecc
Confidence 666777788888888888887765 333 45678888888888888888776666555431 33333333331 1111
Q ss_pred hcCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005732 445 RCGSINDAQASFSSISS--PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
...--++|.++++...+ |+ ....+.+...+...|+.++++.++++... ..||....+.|...+...+.+.+|.+.
T Consensus 416 dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 12234667777766654 33 23455566667777777777777777766 567777777777777777777777777
Q ss_pred HHHHHhcC
Q 005732 522 FRSMKSYG 529 (680)
Q Consensus 522 ~~~~~~~~ 529 (680)
|....+.+
T Consensus 494 y~~ALr~d 501 (564)
T KOG1174|consen 494 YYKALRQD 501 (564)
T ss_pred HHHHHhcC
Confidence 77776543
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=7.2e-09 Score=97.36 Aligned_cols=199 Identities=13% Similarity=0.082 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555555666666666666666555432 1123334444444444455555555544444432 2
Q ss_pred HhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 005732 444 SRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIF 522 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 522 (680)
.+...+..+...+...|++++|.+.+++.......| ....+..+...+...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233344455555556666666666666665432112 2334445555666666777777766
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 005732 523 RSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 596 (680)
++...... .+...+..+...+...|++++|.+.+++. .. +.++..+..+...+...|+.++|..+.+.+.+..
T Consensus 159 ~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66664332 23445556666666777777777666665 21 2344555555566666777777777766665543
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.3e-07 Score=92.61 Aligned_cols=448 Identities=11% Similarity=0.056 Sum_probs=253.2
Q ss_pred HHHHHhhcCCChhHHHHhhccCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--hcc
Q 005732 23 KAITECGRNGQLVTARNLFDQMPI---RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC--AQL 97 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~--~~~ 97 (680)
+=++.+..+|++++|.+...++.. .+..++.+=+-++.+.++|++|+.+.+.-... .-+. .|. +=++| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~-~~~-fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVIN-SFF-FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcc-hhh-HHHHHHHHHc
Confidence 445677788999999999888752 36677777788899999999999665543321 1111 111 23444 478
Q ss_pred CChHHHHHHHHHHHHhCCCCc-chhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccC
Q 005732 98 NSLIDGKQIHCLVLKSGYECF-EFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKM 176 (680)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 176 (680)
+..+.|...++ |..++ ..+...-.+.+.+.|++++|..+++.+.+.+...+..-+.+-+-+--......+.+..
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 89999988887 43333 4466777888999999999999999998776666655555433322222222245555
Q ss_pred CCCCeeeHHHHHH---HHHhCCCChHHHHHHHHHHHHcCCCC-----CCcch--------HHHHHHHHhccCChhhHHHH
Q 005732 177 PKKDVVVWTKLIS---GYAKSVDGCEKALKLFRWMRESGENM-----PNEYT--------FDSVIRACARLGAFCEGKVV 240 (680)
Q Consensus 177 ~~~~~~~~~~ll~---~~~~~~~~~~~a~~~~~~m~~~~~~~-----p~~~~--------~~~ll~~~~~~~~~~~a~~~ 240 (680)
+.....+|..+.. .+...|+ +.+|+++++.....+... .+..- -.-+.-.+-..|+.++|..+
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 5444445555443 4456788 999999999883211100 01111 11234445678999999999
Q ss_pred HHHHHHhCCCCCchHH----HHHHHHhhcCCCHH-HHHHHHhhcC-CCc------------cchhhHHHHHHHhcCCHHH
Q 005732 241 HGLLIKCGFEFDESIG----GALIEFYCGCEAFD-GAMRVYDRLE-NPC------------LNASNSLINGLISMGRIED 302 (680)
Q Consensus 241 ~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~-~A~~~~~~~~-~~~------------~~~~~~l~~~~~~~g~~~~ 302 (680)
+...++.. ++|.... |.|+.+-....=++ .++..++... ... ...+..........+..+.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999886 4444322 22332211111111 2333333332 000 0001111111122334444
Q ss_pred HHHHHHHhcc-CChhHHHHHHHHHh--ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCCh
Q 005732 303 AELIFNRLTE-ANSISYNSMIKGYA--VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLH 379 (680)
Q Consensus 303 a~~~~~~~~~-~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~ 379 (680)
+.++...... .....+..++..+. +......+..++...-+... .......-.+++.....|++
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p-------------~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP-------------EKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC-------------chhHHHHHHHHHHHHhcCCH
Confidence 4444444443 11233444444332 23346777777777766541 22355666778888899999
Q ss_pred HHHHHHHHHH--------HHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHH
Q 005732 380 EKALQLYMTM--------RKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIND 451 (680)
Q Consensus 380 ~~A~~~~~~m--------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (680)
+.|++++... .+.+.. +.+...+...+.+.++.+.|..++...++
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~------------------------- 445 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIK------------------------- 445 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHH-------------------------
Confidence 9999998833 332222 22333334444444444444444333322
Q ss_pred HHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 452 AQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 452 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.+..-.. .-...+..+...-.+.|+-++|..+++++.+.. .+|..+...++.+|++. +++.|..+-+.+.
T Consensus 446 ---~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 446 ---WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred ---HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 1111110 011223334444466788888999998888853 45677888888888775 6777777766654
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=8.7e-11 Score=78.49 Aligned_cols=50 Identities=28% Similarity=0.531 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 511 (680)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888889999999999999999999999988899999999988888864
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=2.6e-09 Score=102.95 Aligned_cols=230 Identities=10% Similarity=-0.102 Sum_probs=124.9
Q ss_pred HhCCChHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 374 VQNNLHEKALQLYMTMRKLA-IDRT--RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
...+..+.++..+.++.... ..|+ ...|......+...|+.+.|...|.+..+.. +.++..|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33455566677776666432 1222 2345555566667777777777777777665 555666777777777777777
Q ss_pred HHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 005732 451 DAQASFSSISS--P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 451 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 527 (680)
.|.+.|+...+ | +...|..+..++...|++++|++.|++..+. .|+..........+...+++++|...+.+...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777766643 2 3456666666667777777777777777663 34432111112223345567777777755442
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-C
Q 005732 528 YGVVPTLEHYTCVVDLLGRSGHLHEA--EEFIKDM-PI----EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDK-K 598 (680)
Q Consensus 528 ~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~ 598 (680)
.. .++...+ . ......|+..++ .+.+.+. .. .| ....|..++..+...|++++|+..|+++++.+| +
T Consensus 194 ~~-~~~~~~~-~--~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KL-DKEQWGW-N--IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hC-CccccHH-H--HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 21 2222111 1 222223443332 2222211 11 11 234566666666677777777777777777665 3
Q ss_pred CCchHHHHHHHH
Q 005732 599 PISAYVILSNIY 610 (680)
Q Consensus 599 ~~~~~~~l~~~~ 610 (680)
..+....++...
T Consensus 270 ~~e~~~~~~e~~ 281 (296)
T PRK11189 270 FVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-07 Score=91.92 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHhcCChhhHHHHhccCC---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhh
Q 005732 160 YVQCNLMSDAFDVFIKMP---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCE 236 (680)
Q Consensus 160 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 236 (680)
.+..|+++.|+..|.+.. ++|.+.|..-..++...++ +++|++=-.+-++.. |.-+..|+....++.-.|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHH
Confidence 344455555555554332 3455666666677777777 677766655555543 3245667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 237 GKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
|...|..-++.. +.+...++.|..++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 777777766653 33445555555555
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=1.3e-06 Score=87.66 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=107.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHH
Q 005732 223 SVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (680)
..+.+....+.|.+|..+++.++... .....|..+.+-|...|+++.|.++|-+.. .++..|..|.+.|+|++
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHH
Confidence 34555566666777777776666553 223445556666667777777777765432 23555666677777777
Q ss_pred HHHHHHHhccCC--hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChH
Q 005732 303 AELIFNRLTEAN--SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHE 380 (680)
Q Consensus 303 a~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~ 380 (680)
|.++-.+...|. +..|-.-..-+-..|++.+|++++-.+... +. .|..|-+.|..+
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p-----------------~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP-----------------DK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc-----------------hH-----HHHHHHhhCcch
Confidence 776666665543 234444444555666777776666555432 21 345566666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhc
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (680)
..+++..+-.... -..|-..+..-+...|+...|+..|-+.. -|.+-+++|..++-+++|.++-+.
T Consensus 868 dmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 6666555432111 12234444555555666666655544332 133445555555556666555443
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.1e-07 Score=96.90 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=153.5
Q ss_pred HHhcCCHHHHHHHHHHhcc--CChh-HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 294 LISMGRIEDAELIFNRLTE--ANSI-SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
+...|++++|++.++.-.. .|.. ........+.+.|+.++|..++..+.+.+ |.|..-|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--------------Pdn~~Yy~~L~ 79 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--------------PDNYDYYRGLE 79 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------CCcHHHHHHHH
Confidence 3444555555555544433 3322 33344555556666666666666666555 34444444444
Q ss_pred HHHHhC-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCCh-HHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 371 SGYVQN-----NLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSL-QQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 371 ~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
.+..-. ...+...++|+++...- |.......+.-.+.....+ ..+..++......|+|+ +|+.|-..|.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~ 154 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYK 154 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHc
Confidence 443111 23455555666554422 3333333332222222222 23344445555555433 2333444444
Q ss_pred hcCChHHHHHHHhcCC------------------CCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005732 445 RCGSINDAQASFSSIS------------------SPNVAAW--TALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV 503 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~------------------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 503 (680)
...+..-..+++.... .|....| ..+...|-..|++++|++++++.+++ .|+ ...|.
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~ 232 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYM 232 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 3333333333332211 1333333 45566777888888888888888884 455 56677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--------HHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP---IELD--------AVVWGAL 572 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--------~~~~~~l 572 (680)
.-...+-+.|++.+|.+.++.....+. -|..+-+..+..+.++|++++|.+++.... ..|. .......
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 777788888888888888888886553 366666677777888888888888877662 1221 1112344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
+.+|.+.|++..|+..|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677888888888777666553
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=1.1e-08 Score=96.93 Aligned_cols=227 Identities=11% Similarity=0.000 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCC-chHhHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE-SNVYVGTSLVD 441 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 441 (680)
......+.+++...|+++.++ .++.... .|.......+...+...++.+.+..-++........ .+.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344555677788888776544 3332222 555555555555554444444444444333322222 23333333334
Q ss_pred HHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~aw------------ 173 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAW------------ 173 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHH------------
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHH------------
Confidence 455566677666666554 34455555566666666666666666666652 223 2233333333
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+..+.-.+.+.+|..+|+++ ...+++.+.+.++.+....|++++|+..++++++.+|++
T Consensus 174 -------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 174 -------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp -------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred -------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 22222233566666666665 234566666777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhcCCc-hHHHHHHHHHhhC
Q 005732 600 ISAYVILSNIYAVLGKW-GKKMDIRKRLTHL 629 (680)
Q Consensus 600 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 629 (680)
+.+..+++.+....|+. +.+.+++.+++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777776 4566666666543
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.6e-05 Score=83.06 Aligned_cols=557 Identities=13% Similarity=0.092 Sum_probs=274.9
Q ss_pred hcccCccchhhHHHHHhhcCCChhHHHHhhccCCC-------------------C-----ChhhHHHHHHHHHcCCChhH
Q 005732 12 MTQETLIVSTNKAITECGRNGQLVTARNLFDQMPI-------------------R-----TVVSWNTMLCGYSKWAKFDE 67 (680)
Q Consensus 12 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-----~~~~~~~ll~~~~~~~~~~~ 67 (680)
.....|+.+.-.-|++-++-|++.+++++.++-.- | |.+-+-.=+-.|.-.++..+
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~k 797 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQK 797 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHH
Confidence 44566777777899999999999999998876520 1 11111111222222333333
Q ss_pred HHHHHHHHHhCC-----------CCCCHhhHH-------------HHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhh
Q 005732 68 SLSLVSTMHRSN-----------VKLNETTFS-------------TILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGS 123 (680)
Q Consensus 68 a~~~~~~m~~~~-----------~~~~~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (680)
-+++|-+=..-+ +.=+....- -+..-+-+.+++......++..+..|.+ |+.+++
T Consensus 798 yIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hn 876 (1666)
T KOG0985|consen 798 YIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHN 876 (1666)
T ss_pred HHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHh
Confidence 333332211110 000111111 1222233345555556666777777754 788899
Q ss_pred hHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCC--------CCeeeHHHHHHHHHhCC
Q 005732 124 GLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK--------KDVVVWTKLISGYAKSV 195 (680)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~~ 195 (680)
+|...|...++-.+- +.+.|+.-=+..+.-||..++.-.|.-.+++-.- .....|....+.+.+..
T Consensus 877 AlaKIyIDSNNnPE~------fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~ 950 (1666)
T KOG0985|consen 877 ALAKIYIDSNNNPER------FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERS 950 (1666)
T ss_pred hhhheeecCCCChHH------hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhcc
Confidence 999998887665432 1222222223334445555555444433333210 01112333333333322
Q ss_pred CC--h--------HHHHHHHHHHHHcCCC-CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC--CCCCchHHHHHHHH
Q 005732 196 DG--C--------EKALKLFRWMRESGEN-MPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG--FEFDESIGGALIEF 262 (680)
Q Consensus 196 ~~--~--------~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~ 262 (680)
+. | .--.++.++..+.+++ ..|+...+..++++...+-..+-.++++.+.-.+ +..+....+.|+-.
T Consensus 951 D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt 1030 (1666)
T KOG0985|consen 951 DPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT 1030 (1666)
T ss_pred ChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH
Confidence 20 1 1112344444443332 1256667777777777777777777777765432 12222333444433
Q ss_pred hhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 263 YCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
..+ -+.....++.+++..-+. ..+.......+-+++|..+|++..- +..+.+.|+. .-+..+.|.+.-++..
T Consensus 1031 Aik-ad~trVm~YI~rLdnyDa---~~ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n 1102 (1666)
T KOG0985|consen 1031 AIK-ADRTRVMEYINRLDNYDA---PDIAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCN 1102 (1666)
T ss_pred Hhh-cChHHHHHHHHHhccCCc---hhHHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhC
Confidence 333 344555555555541111 1233445555566666666655432 1112222221 1233333433333322
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
.+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++.
T Consensus 1103 -------------------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1103 -------------------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred -------------------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1234555555555555555555444222 233445555555555555555555555
Q ss_pred HHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-----------------------CCCHHHHHHHHHHHHHcCC
Q 005732 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-----------------------SPNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~ 479 (680)
..++..-+|... ..|+-+|++.+++.+.++++..-. -.++..|..|...+...|+
T Consensus 1158 MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1158 MARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444443333322 344445555555444443331100 0234556666667777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005732 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (680)
+..|...-++. .+..||..+-.+|...+.+.-|. |-..++.....-...++..|...|-+++-+.+++.
T Consensus 1236 yQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1236 YQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 77666543322 25677887777887766554432 33334444556677888999999999999999887
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--C------CCCchHHHHHHHHHhcCCchHHHHH
Q 005732 560 M-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLD--K------KPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 560 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p------~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
. +... .-..|..|...|.+- ..++..+.++-....- | +....|..++.+|.+-..|+.|.-.
T Consensus 1305 ~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5 4332 233445555444433 2333333333222211 1 1234577777777777777766544
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=2.8e-08 Score=95.81 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=155.9
Q ss_pred CChHHHHHHHHHHHhcC-CC--chHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHH
Q 005732 412 GSLQQGQLLHAHLVKTP-FE--SNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVL 485 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 485 (680)
+..+.+..-+.+++... .. .....|..+...|...|+.+.|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777777777542 12 2245677888889999999999999988764 467899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005732 486 LFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PI 562 (680)
Q Consensus 486 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 562 (680)
.|++..+ +.|+ ...+..+..++...|++++|.+.+++..+..+ +......+...+...++.++|.+.+++. ..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998 5565 67788888889999999999999999997543 3222222223345678899999999765 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------cCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMF-------GLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
.|+...+ .......|+...+ ..++.+. ++.|+.+.+|..++.++...|++++|...+++..+.++.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3332222 2223345555443 2333333 445666789999999999999999999999999887653
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=9.8e-08 Score=86.96 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=122.2
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChh
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 481 (680)
+..+...|+...|+.....+++.. +.+...+..-..+|...|++..|+.-++... ..++..+-.+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 444556788888888888888775 6777788888888888899888887666544 466777777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHH-H---HHH---------HHHHhccCCHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAAT-F---VGV---------LSACVRAGLVNEGMKIFRSMKSYGVVPTLE---HYTCVVDLLG 545 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~-~---~~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 545 (680)
.++...++..+ +.||... | ..| +......++|.++.+-.+.+.+..+..... .+..+-.++.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 88888888887 5677432 1 111 111223455555555555555433321222 2233344455
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 546 RSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
..|++.+|++...+. .+.|+ +.++..-..+|.....++.|++-|+++.+.++++.
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 566666666666554 44443 55555555666666666666666666666666653
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.9e-09 Score=102.29 Aligned_cols=246 Identities=14% Similarity=0.108 Sum_probs=175.1
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHH
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLL 486 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 486 (680)
+.|++.+|.-.|+..++.. |.+...|..|.......++-..|+..+++..+ .+......|.-.|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666666655 66677777777777777777777777776654 4556666777778888888888888
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005732 487 FEIMLEQDIV--------PNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 487 ~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++.-+....+ ++...-.. ..+..........++|-++. ..+..+|+.+...|.-.|.-.|++++|++.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8776553210 00000000 12222233444555665555 5565688999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCC
Q 005732 558 KDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDP 635 (680)
Q Consensus 558 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 635 (680)
+.+ .++| |...|+-|+..++...+.++|+..|++++++.|.-..+.+.|+..|...|.|.||.+.|-.......+...
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 987 5666 68889999999999999999999999999999999999999999999999999999999887765432211
Q ss_pred ceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 636 GCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
+ .+..++ ++.|.+.||..-.-++
T Consensus 534 ~---------------~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 534 H---------------NKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred c---------------ccCCcc-hHHHHHHHHHHHHHcC
Confidence 1 111122 6778888886554443
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.09 E-value=8e-07 Score=92.38 Aligned_cols=304 Identities=13% Similarity=0.035 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCC
Q 005732 301 EDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNN 377 (680)
Q Consensus 301 ~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~ 377 (680)
..|...+.+... .+..+|+.|.-. ...|.+.-+...|-+..... +.+..+|..+.-.+.+..
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--------------p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--------------PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--------------ccchhheeccceeEEecc
Confidence 355666666555 556666666555 66677777777776666554 667778888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHH--Hh--cCCCchHhHHHHHHHHHHhcCChHHH
Q 005732 378 LHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHL--VK--TPFESNVYVGTSLVDMYSRCGSINDA 452 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~g~~~~A 452 (680)
+++-|...|...+.. .| +...+..........|+.-+...+|..- .. .|--++..-+-+........|+.++-
T Consensus 865 d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 899998888887663 34 3444444444444566666666666652 21 23344444444445555666776666
Q ss_pred HHHHhcCCC-------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHhccCC
Q 005732 453 QASFSSISS-------------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATFVG----VLSACVRAGL 514 (680)
Q Consensus 453 ~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~----ll~~~~~~g~ 514 (680)
+...+.+.. .+...|.+.....-..+.++.|.++..+.+.. ..+-+..+|+. +.+.++..|.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 655555542 23456666666566666666666666554321 11223344442 2233445566
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 515 VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IELD-AVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
++.|..-+..... ..+..+-..- -+..-.++++++.+.|+++ . ...+ +.....++.+....+.-+.|...+
T Consensus 1023 fe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1023 FESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred hhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 6655443332210 0111111111 1123467788888888876 1 2223 334455555566677778888888
Q ss_pred HHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 590 QKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
-+...+.|.+......+.-++.-..+-.......++
T Consensus 1099 fe~~~ls~~~~~sll~L~A~~ild~da~~ssailee 1134 (1238)
T KOG1127|consen 1099 FEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEE 1134 (1238)
T ss_pred HHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHH
Confidence 777777777666666655555444333333333333
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2.2e-07 Score=94.05 Aligned_cols=393 Identities=13% Similarity=0.047 Sum_probs=214.4
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--C---CccchhhHHH
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--N---PCLNASNSLI 291 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~---~~~~~~~~l~ 291 (680)
|+..|..+.-+....|+++.+-+.|++.....+ .....|..+...|..+|.-..|..+++... . ++++.+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 666677777777777777777777777655432 244566777777777777777777777655 2 2222222222
Q ss_pred HHHH-hcCCHHHHHHHHHHhcc--------CChhHHHHHHHHHhcc-----------CChhhHHHHHhhcCcCCcchhhh
Q 005732 292 NGLI-SMGRIEDAELIFNRLTE--------ANSISYNSMIKGYAVY-----------GQVDDSKRLFEKMPHRSIISLNT 351 (680)
Q Consensus 292 ~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 351 (680)
..|. +.+..++++.+-.+... ..+..|..+.-+|... ....++.+.+++..+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d------ 474 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD------ 474 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC------
Confidence 2232 23555555555444433 3344555555444421 12344556666665555
Q ss_pred HhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCc
Q 005732 352 MISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFES 431 (680)
Q Consensus 352 l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 431 (680)
+.|+....-+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+...+.- +.
T Consensus 475 --------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~ 545 (799)
T KOG4162|consen 475 --------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GD 545 (799)
T ss_pred --------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hh
Confidence 222222222333355566677777777777766555566666666666667777777777766555431 11
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP--NAATFVGVLSAC 509 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~ 509 (680)
|......-+..-...++.+++......+.. .|... ...-+.++-...+++...+.-.--.| ...++..+..-.
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 111111112222224444444433222110 00000 00011111122222222222110011 123333332222
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCC--------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPT--------LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW 579 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 579 (680)
...+ ..+..-.. +......|. ...|......+.+.++.++|...+.+. ++.| .+..|...+..+...
T Consensus 621 a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 621 ASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred Hhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH
Confidence 1111 00000000 111112222 234556667788899999999888777 4444 677788888888889
Q ss_pred CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH--HHHHHhhCCCcc
Q 005732 580 MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD--IRKRLTHLEVKK 633 (680)
Q Consensus 580 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~ 633 (680)
|+.++|.+.|..++.++|+++.....++.++.+.|+..-|.. ++..+.+.++..
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999998887777 888887765433
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.04 E-value=3.2e-06 Score=88.11 Aligned_cols=562 Identities=9% Similarity=-0.021 Sum_probs=325.0
Q ss_pred hhHHHHhhccCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHH
Q 005732 34 LVTARNLFDQMPIRT---VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLV 110 (680)
Q Consensus 34 ~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 110 (680)
...|...|-+..+.| ...|..|...|+...+...|...|....+.. .-+......+...+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 445555444333222 3467778888877778888888888887652 224455667777888888888888874333
Q ss_pred HHhC-CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHHHHHHhcCChhhHHHHhccCCCCCeee-HH
Q 005732 111 LKSG-YECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVV-WT 185 (680)
Q Consensus 111 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 185 (680)
.+.. ...-...|..+.-.|...++...|..-|+..... |...|..+..+|.++|++..|+++|.+...-++.. |.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 2221 1111122333445677778888888888877653 45668888889999999999999998766433322 22
Q ss_pred HH--HHHHHhCCCChHHHHHHHHHHHHcC-----CCCCCcchHHHHHHHHhccCChhhHHHHHHHHH-------HhCCCC
Q 005732 186 KL--ISGYAKSVDGCEKALKLFRWMRESG-----ENMPNEYTFDSVIRACARLGAFCEGKVVHGLLI-------KCGFEF 251 (680)
Q Consensus 186 ~l--l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~ 251 (680)
.. ....+..|. +.++++.+....... ...--..++..+...+...|-...+..+++.-+ .+....
T Consensus 633 ~fk~A~~ecd~Gk-Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 633 RFKEAVMECDNGK-YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 11 112234566 788888887775421 000022334444444444443334443333322 222122
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHH----hcCCH---H---HHHHHHHHhcc--CChhHHH
Q 005732 252 DESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLI----SMGRI---E---DAELIFNRLTE--ANSISYN 319 (680)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----~~g~~---~---~a~~~~~~~~~--~~~~~~~ 319 (680)
+...|-.+ ..|..+|-... |+.+. ..++.++. ..+.. + -+.+.+-.-.. .+..+|.
T Consensus 712 ~~~~Wi~a----------sdac~~f~q~e-~~~vn-~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 712 DRLQWIVA----------SDACYIFSQEE-PSIVN-MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred hHHHHHHH----------hHHHHHHHHhc-ccchH-HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 22222222 22333333333 22211 11222222 12221 1 00011100011 3345566
Q ss_pred HHHHHHhc-------cC-ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 320 SMIKGYAV-------YG-QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 320 ~ll~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
.++..|.+ .+ +...|+..+.+..+.. ..+..+|+.|.-. ...|.+.-|...|-+-..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--------------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--------------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--------------hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 55554433 22 2346778888777765 5677788877655 555777777777766554
Q ss_pred CCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-----C---CC
Q 005732 392 LAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-----S---PN 463 (680)
Q Consensus 392 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~ 463 (680)
.. +....+|..+.-.+....+++.|...|....... |.+...+-.........|+.-++..+|..-. + ++
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 32 3456678888888889999999999999988776 5666666555555566788888888876521 1 44
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH----------HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCC
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEI----------MLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVP 532 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~----------m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~ 532 (680)
..-|-.-..-...+|+.++-+..-+. ... +..-+...|........+.+.+..|.+...++. -...+.
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~ 1001 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKL 1001 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433445566666554443333 332 222246777777777778888888887777654 111223
Q ss_pred ChhHHH----HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc---hHHH
Q 005732 533 TLEHYT----CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS---AYVI 605 (680)
Q Consensus 533 ~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~ 605 (680)
+...|+ .+...++..|+++.|..-+.......+..+...-+.. .-.++++++.+.|++++.+-.++.. ....
T Consensus 1002 d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1002 DESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 444444 3445667788999888777665433343333222222 4578999999999999998766544 3445
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 005732 606 LSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++.....++..+.|...+-+...
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHH
Confidence 56666778888889888777665
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1e-07 Score=82.31 Aligned_cols=167 Identities=13% Similarity=0.038 Sum_probs=82.5
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLS 507 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~ 507 (680)
+..++..+...|.+.|+.+.|.+.|+...+ .+....|....-+|..|++++|...|++......-|. ..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 333344444444444444444444443332 2233444444444555555555555555554322222 345555555
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 585 (680)
+..+.|+.+.|.+.|++..+.... .+.....+.....+.|++..|..+++.. ...++..++...+..-...||.+.+
T Consensus 148 Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 555555555555555555543211 2233344455555556666665555554 2234555554455555556666666
Q ss_pred HHHHHHHHcCCCCC
Q 005732 586 ERAAQKMFGLDKKP 599 (680)
Q Consensus 586 ~~~~~~~~~~~p~~ 599 (680)
-++=.++.+..|.+
T Consensus 227 ~~Y~~qL~r~fP~s 240 (250)
T COG3063 227 QRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhCCCc
Confidence 66666666666665
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.2e-06 Score=87.26 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=175.3
Q ss_pred cchhhhhHHH--HHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCC-----------CCe-ee
Q 005732 118 FEFVGSGLLF--FYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK-----------KDV-VV 183 (680)
Q Consensus 118 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~ 183 (680)
|..+--++++ .|...|+.+.|.+-.+-+. ....|..+.+.+++.+++|-|.-.+..|.. .+. .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4455555543 5677788888877776663 345677788888888777777766665531 111 11
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
-.-.......-|- +++|..+|.+-+.. ..+=+.|-..|.|++|.++-+.=-+ ..=..||.....-+
T Consensus 803 eakvAvLAieLgM-lEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DR---iHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 803 EAKVAVLAIELGM-LEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDR---IHLRNTYYNYAKYL 868 (1416)
T ss_pred hhHHHHHHHHHhh-HHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccc---eehhhhHHHHHHHH
Confidence 1111122233355 67777777776542 2333455667777777766543211 11123555555555
Q ss_pred hcCCCHHHHHHHHhhcCC-----------------------CccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHH
Q 005732 264 CGCEAFDGAMRVYDRLEN-----------------------PCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNS 320 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (680)
-..+|.+.|++.|++... .+...|.-...-+-..|+.+.|+.+|.... -|-+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs 943 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFS 943 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhh
Confidence 666777777777765541 111222222222334456666666655443 3555
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST 400 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 400 (680)
+++..|-.|+.++|.++-++ ..|..+...+...|-..|+..+|...|.+.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e-------------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE-------------------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred heeeEeeccCchHHHHHHHh-------------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 56666666777777666554 34555666788889999999999999887753
Q ss_pred HHHHHHHhcccC---------------ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-----
Q 005732 401 FSVLFHACSCLG---------------SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS----- 460 (680)
Q Consensus 401 ~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 460 (680)
|...|+.|-..+ +.-.|..+|++. |. -....+..|-+.|.+.+|.++-=+-.
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 333333332222 222233333332 11 11223445777777777766532211
Q ss_pred ---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005732 461 ---------SPNVAAWTALMNGYSHHGLGSEAVLLFEIM 490 (680)
Q Consensus 461 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 490 (680)
..|+...+.....++.+.++++|..++-..
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 145556666666666667777776665443
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=6.4e-08 Score=97.20 Aligned_cols=233 Identities=15% Similarity=0.133 Sum_probs=176.6
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCChhh-HHHHHHHhcccCChHHHHHHHHHHHhc-----C-
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKL-----A-IDRTRST-FSVLFHACSCLGSLQQGQLLHAHLVKT-----P- 428 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~- 428 (680)
-..+...+...|...|++++|..+++...+. | ..|...+ ...+...|...+++++|..+|+.+... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445566889999999999999999988664 2 1344333 344777888999999999999988752 2
Q ss_pred -CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---
Q 005732 429 -FESNVYVGTSLVDMYSRCGSINDAQASFSSISS----------PNV-AAWTALMNGYSHHGLGSEAVLLFEIMLEQ--- 493 (680)
Q Consensus 429 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--- 493 (680)
.+.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++++..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122345677788899999999999888776542 233 24566777888999999999999877642
Q ss_pred CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC---CChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005732 494 DIVPN----AATFVGVLSACVRAGLVNEGMKIFRSMKSY----GVV---PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-- 560 (680)
Q Consensus 494 ~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 560 (680)
-+.++ ..+++.|...|...|++++|.++++++... +.. -....++.|...|.+.+++.+|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 467899999999999999999999988722 111 12456788899999999999999998875
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 561 ------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 561 ------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+..|+ ..+|..|...|...|+++.|+++.+++..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 13343 56789999999999999999999988764
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.8e-06 Score=82.81 Aligned_cols=177 Identities=13% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCH
Q 005732 439 LVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA-ATFVGVLSACVRAGLV 515 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~ 515 (680)
+..+|.+.++++.++..|++... .++.. ..+....++++.......- +.|.. .-...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 33456666777777777766442 11111 1223344555555544444 33432 1222235567788888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
..|+..+.++.... +-|...|..-.-+|.+.|.+..|++-.+.. ...|+ ...|.--+.++....+++.|.+.|++++
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888765 557788888888888888888888776665 34443 5556556667777889999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 594 GLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+.+|++..+...+.+............++.++
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999988888777777764434444444443
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.1e-06 Score=78.82 Aligned_cols=410 Identities=12% Similarity=0.052 Sum_probs=207.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHH-HHHH
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA-LIEF 262 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~ 262 (680)
+.+.+..+.+..+ +++|++++..-.+...+ +....+.+..+|-...++..|-..++++-.. .|...-|.. -...
T Consensus 13 ftaviy~lI~d~r-y~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDAR-YADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhh-HHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 5556666666666 67777776666555432 5555666666666666777777776666554 233333321 2233
Q ss_pred hhcCCCHHHHHHHHhhcCC-CccchhhHHH--HHHHhcCCHHHHHHHHHHhcc-CChhHHHHHHHHHhccCChhhHHHHH
Q 005732 263 YCGCEAFDGAMRVYDRLEN-PCLNASNSLI--NGLISMGRIEDAELIFNRLTE-ANSISYNSMIKGYAVYGQVDDSKRLF 338 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~ 338 (680)
+.+.+.+.+|+.+...|.. +....-..-+ ......+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 4455566666666655542 1111101111 122334555555555555553 44444444444445556666666666
Q ss_pred hhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh----HHHHHHHhcccCCh
Q 005732 339 EKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST----FSVLFHACSCLGSL 414 (680)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~ 414 (680)
....+-+- -.....|+.-+ +..+.++++.|++...++.+.|++..+.. ..-.+.+ ...|+.
T Consensus 168 qaAlqvsG-------------yqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt 232 (459)
T KOG4340|consen 168 QAALQVSG-------------YQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT 232 (459)
T ss_pred HHHHhhcC-------------CCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch
Confidence 55555332 12233444333 33344556666666666655554322210 0000000 000000
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSHHGLGSEAVLLFEI 489 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 489 (680)
..+.. ..-...+|.-...+.+.|+.+.|.+.+-.|.. .|+++...+.-. -..+++.+..+-+.-
T Consensus 233 ---~~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 233 ---LVLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQF 301 (459)
T ss_pred ---HHHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHH
Confidence 00000 00112233334456678999999999999874 566666554322 124556666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHH
Q 005732 490 MLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PTLEHYTCVVDLLG-RSGHLHEAEEFIKDMPIELDAV 567 (680)
Q Consensus 490 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~ 567 (680)
+...+.- ...||..++-.||+..-++.|..++.+-...... .+...|+ |++++. ..-..++|.+-++.+.......
T Consensus 302 LL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 302 LLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred HHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6665432 4678888888999998888888877653322111 2333443 333333 3446667766665542100000
Q ss_pred HHHHH--HHHHHhcCC---HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 568 VWGAL--LSACWFWMN---MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 568 ~~~~l--~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.-... +..-...++ ...++.-|++.+++.- ......+++|++..++..+.+.|..-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 00011 111111121 1223333444444331 24567788999999999999999876653
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=1.4e-06 Score=87.63 Aligned_cols=59 Identities=5% Similarity=-0.089 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCC---------CCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKK---------PISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
...++...|+.++|...++.+....-. ........+.++.+.|++++|.+.+......+
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334455566666666666655442211 23344566667777788888877777766544
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.7e-07 Score=81.03 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=206.0
Q ss_pred HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005732 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT 397 (680)
Q Consensus 318 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 397 (680)
+..++..+.+..+++.|++++..-.++. +.+....+.|..+|....++..|-+.++++-. ..|.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~ 76 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPE 76 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChH
Confidence 5566666777888888888888777765 55777888899999999999999999999876 4455
Q ss_pred hhhHHH-HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH--HHHhcCChHHHHHHHhcCCC-CCHHHHHHHHHH
Q 005732 398 RSTFSV-LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD--MYSRCGSINDAQASFSSISS-PNVAAWTALMNG 473 (680)
Q Consensus 398 ~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 473 (680)
..-|.. -...+.+.+.+..|..+...|.+. +....-..-+. ..-..+++..+..+.+.... .+..+.+...-.
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 554433 234566778888899888887653 11111111111 22346788888888888874 555566555555
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-------------Chh-----
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP-------------TLE----- 535 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~----- 535 (680)
..+.|+++.|++-|+...+-+---....|+..+. ..+.|+++.|.+...++.++|++. |..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 6789999999999999887543334566765544 557789999999999998777532 211
Q ss_pred ---HHHHHHH-------HHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 536 ---HYTCVVD-------LLGRSGHLHEAEEFIKDMP----IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 536 ---~~~~l~~-------~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
.-+.++. .+.+.|+++.|.+.+..|+ ...|+.|...+... -..++.....+-++-+++..|-+++
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChH
Confidence 1122333 3567899999999999994 44577777665432 2356777778888888999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
++..+.-+|++..-++-|.+++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 999999999999999999888744
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=6.2e-06 Score=82.91 Aligned_cols=291 Identities=10% Similarity=0.018 Sum_probs=150.4
Q ss_pred chhhHHHHHHHhcCCHHHHHHHHHHhccCChhH------HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhccc
Q 005732 285 NASNSLINGLISMGRIEDAELIFNRLTEANSIS------YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPE 358 (680)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 358 (680)
..+..+...+...|+.+.+...+.......... .......+...|++++|...+++.....
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------- 73 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------------- 73 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 334555556666677777666666655544321 1112234456677777777777776654
Q ss_pred CCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchH
Q 005732 359 MERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTR-STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNV 433 (680)
Q Consensus 359 ~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 433 (680)
|.+...+.. ...+.. .+....+.+.+.. .....|+. .....+...+...|++++|...+++..+.. +.+.
T Consensus 74 -P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 74 -PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred -CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 444444442 222222 3344444444433 11122322 233344556667777788888877777765 5556
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHH-H-
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS-----PNV--AAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAATF-V- 503 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~-~- 503 (680)
..+..+..++...|++++|...+++..+ ++. ..|..+...+...|++++|..++++...... .+..... .
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 6667777777777888888777776553 121 2344566677777888888888777754322 1111111 1
Q ss_pred -HHHHHHhccCCHHHHHHH--HHHH-HhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CC----C----CHH
Q 005732 504 -GVLSACVRAGLVNEGMKI--FRSM-KSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP---IE----L----DAV 567 (680)
Q Consensus 504 -~ll~~~~~~g~~~~A~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~----p----~~~ 567 (680)
.++.-+...|....+.++ +... ..... ............++...|+.++|..+++.+. .. . ...
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 308 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG 308 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh
Confidence 222223333432222222 1111 11100 0111111244555667777777777777651 11 0 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
.......++...|++++|.+.+..++
T Consensus 309 ~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 309 LPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12222233456777777777776653
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=8.4e-06 Score=93.17 Aligned_cols=365 Identities=10% Similarity=-0.001 Sum_probs=227.6
Q ss_pred HHHHhhcCCCHHHHHHHHhhcCCCcc--chhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHHHHHhccCChh
Q 005732 259 LIEFYCGCEAFDGAMRVYDRLENPCL--NASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~ 332 (680)
....+...|++.+|............ .........+...|+.+.+...++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 34445566777766665555541111 1112233445567888888888877632 23333344455566788999
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----hhHHHHHH
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERN--PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR----STFSVLFH 406 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~ 406 (680)
++...+......-.... ....+. ......+...+...|++++|...+++....-...+. .....+..
T Consensus 427 ~a~~~l~~a~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 427 EVNTLLARAEQELKDRN-------IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHHHHHHHHHHhccccC-------cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 99888876543210000 000111 122223344566899999999999988763211121 23445556
Q ss_pred HhcccCChHHHHHHHHHHHhc----CC-CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----CHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKT----PF-ESNVYVGTSLVDMYSRCGSINDAQASFSSISS-------P----NVAAWTAL 470 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 470 (680)
.+...|+++.|...+.+.... |. .........+...+...|+++.|...+++... + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 677899999999998887753 21 11223455667778889999999998876542 1 12234455
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhHH-----HHH
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQ--DIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PTLEHY-----TCV 540 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l 540 (680)
...+...|++++|...+.+.... ...+. ...+..+.......|+++.|.+.+......... .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677889999999999887653 11222 334444566777899999999999888632111 111111 112
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC------CCchHHHHHH
Q 005732 541 VDLLGRSGHLHEAEEFIKDMPIE--LDA----VVWGALLSACWFWMNMEVGERAAQKMFGLDKK------PISAYVILSN 608 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~ 608 (680)
+..+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...+++++..... ...++..++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24455689999999998776311 111 11345666778899999999999998875322 2345778899
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++.+.|+.++|.+.+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=4e-07 Score=85.33 Aligned_cols=182 Identities=13% Similarity=-0.052 Sum_probs=114.1
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----H
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN-V---AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA----A 500 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~ 500 (680)
.....+..++..+...|+++.|...|+++.+ |+ . ..+..+..++...|++++|+..++++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455566666677777777777777776653 22 1 35566667777777777777777777763 2321 1
Q ss_pred HHHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 005732 501 TFVGVLSACVRA--------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGAL 572 (680)
Q Consensus 501 ~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 572 (680)
++..+..++... |+++.|.+.++.+.+..+. +...+..+..... ..... ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 333344444433 5666777777776643222 1112211111100 00000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
...+...|++.+|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999988754 679999999999999999999999887653
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=5.4e-07 Score=80.61 Aligned_cols=148 Identities=9% Similarity=0.113 Sum_probs=112.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...... +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777877776444332221 11 0 1223566677777777777554 45788888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 551 HEAEEFIKDM-PIEL-DAVVWGALLSAC-WFWMN--MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 551 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
++|...+++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 4455 677788888764 56677 59999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 005732 626 LTHLEV 631 (680)
Q Consensus 626 ~~~~~~ 631 (680)
+.+...
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 987654
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=6.3e-06 Score=75.54 Aligned_cols=307 Identities=8% Similarity=0.027 Sum_probs=208.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhH---HHHHHHhcCCHHHHHHHHHHhcc--CChhH-HHHHHHHHhcc
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNS---LINGLISMGRIEDAELIFNRLTE--ANSIS-YNSMIKGYAVY 328 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~ 328 (680)
-..-+...+...|++..|+.-|......++..|.+ -...|...|+...|+.-+.++.+ ||-.. -..-...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 33445566667778888888887777444444444 34578888888888888888877 44332 22234467788
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHH--HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWN--SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 406 (680)
|.++.|..-|+.+++.+.. -+......+...+....|+ ..+..+...|+...|++....+.+-. +.|...+..-..
T Consensus 120 Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 8999999888888876521 0000011111111122222 23445667899999999999998742 457777888888
Q ss_pred HhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHH----HHHHH---------H
Q 005732 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVA----AWTAL---------M 471 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l---------~ 471 (680)
+|...|.+..|+.-++...+.. ..+...+..+-..+...|+.+.+.....+..+ ||.. .|-.+ +
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888887776 55666677778888889999999988888775 4432 12111 2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAAT---FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
......+++.++++-.+...+........+ +..+-.++...+++.+|++...++.+.. +.|..++---..+|.-..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhH
Confidence 234567888888888888877543322233 3445556678899999999999998643 224777777778899999
Q ss_pred ChHHHHHHHHhC-CCCCC
Q 005732 549 HLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 549 ~~~~A~~~~~~~-~~~p~ 565 (680)
+++.|+.-|+.. ...++
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999987 34443
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.4e-06 Score=83.01 Aligned_cols=220 Identities=14% Similarity=0.163 Sum_probs=170.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhH
Q 005732 289 SLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVT 365 (680)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (680)
....-+.+.|++.+|.-.|+.... | +...|..|.......++-..|+..+.+..+.+ +.|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--------------P~Nlea 355 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--------------PTNLEA 355 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--------------CccHHH
Confidence 445567788999999999998877 3 45589999999999999999999999999988 788899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----C---ChhhHHHHHHHhcccCChHHHHHHHHHHH-hcCCCchHhHH
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAID-----R---TRSTFSVLFHACSCLGSLQQGQLLHAHLV-KTPFESNVYVG 436 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 436 (680)
...|.-.|...|.-..|+..|+.......+ + +...-.. ..+..........++|-++. ..+..+|+.+.
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 999999999999999999999998664311 0 0000000 12222223344455554444 45556888899
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 005732 437 TSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRA 512 (680)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 512 (680)
..|.-.|--.|++++|+..|+.+.. .|...||.|...++...+.++|+..|++..+ ++|+ ......|.-+|...
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhh
Confidence 9999999999999999999998874 5677999999999999999999999999998 7887 44555566778999
Q ss_pred CCHHHHHHHHHHHH
Q 005732 513 GLVNEGMKIFRSMK 526 (680)
Q Consensus 513 g~~~~A~~~~~~~~ 526 (680)
|.+++|.+.|-.+.
T Consensus 512 G~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 512 GAYKEAVKHLLEAL 525 (579)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998887665
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=6.3e-07 Score=75.75 Aligned_cols=93 Identities=9% Similarity=-0.094 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+..+...+...|++++|.+.|+.. ...| +...+..++.++...|++++|...|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334555666666777776666665 3333 56666667777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhhC
Q 005732 615 KWGKKMDIRKRLTHL 629 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~ 629 (680)
++++|...+++..+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=7e-07 Score=75.48 Aligned_cols=124 Identities=10% Similarity=-0.066 Sum_probs=100.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
..++++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666666 44554 4456677788899999999999888654 346778888889999999999999999987 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 563 EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.| ++..+..++.++...|+.++|+..|+++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 788889999999999999999999999999999999998888877544
No 109
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=1e-05 Score=77.84 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=124.5
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC-ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCh--hHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG-SINDAQASFSSISS---PNVAAWTALMNGYSHHGLG--SEAVLL 486 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~ 486 (680)
..++|......+++.. +.+..+|+.-..++...| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 333333333333344444 34555555555442 3333454443334444432 556777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHh
Q 005732 487 FEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS---GHL----HEAEEFIKD 559 (680)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~ 559 (680)
++++.+...+ |...|....-++...|+++++++.++++.+.++. +...|+....++.+. |.. ++++++..+
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 7777764322 4666666666666777777777777777765533 455555555444443 222 456666644
Q ss_pred C-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC------------------C
Q 005732 560 M-PIEL-DAVVWGALLSACWFW----MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG------------------K 615 (680)
Q Consensus 560 ~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~ 615 (680)
+ ...| |...|+.+...+... ++..+|...+.++.+.+|+++.++..|+.+|.... .
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSD 288 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccccc
Confidence 4 4445 577777777777662 45567888899998989999888999999998632 2
Q ss_pred chHHHHHHHHHh
Q 005732 616 WGKKMDIRKRLT 627 (680)
Q Consensus 616 ~~~A~~~~~~~~ 627 (680)
.++|.++++.+.
T Consensus 289 ~~~a~~~~~~l~ 300 (320)
T PLN02789 289 STLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHH
Confidence 366888887774
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00012 Score=83.68 Aligned_cols=325 Identities=10% Similarity=-0.038 Sum_probs=210.7
Q ss_pred HhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CC---h-----hHHHHHHHHH
Q 005732 262 FYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----AN---S-----ISYNSMIKGY 325 (680)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~-----~~~~~ll~~~ 325 (680)
.....|+++.+..+++.+. ..++.........+...|+++++...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445678888888877764 12222323444556678999999988887643 11 1 1122233456
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---C--
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKLAID---R-- 396 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p-- 396 (680)
...|++++|...++....... ..+ ....+.+...+...|++++|...+.+.....-. +
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 463 INDGDPEEAERLAELALAELP-------------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCC-------------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 688999999999988765210 111 234566677788899999999999888643111 1
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHhc----CCC---chHhHHHHHHHHHHhcCChHHHHHHHhcCCC------C-
Q 005732 397 TRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PFE---SNVYVGTSLVDMYSRCGSINDAQASFSSISS------P- 462 (680)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~- 462 (680)
...++..+...+...|+++.|...+++.... +.. .....+..+...+...|++++|...+.+... +
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 1234455666778899999999998877653 211 1233345566677788999999988877642 1
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--
Q 005732 463 -NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD--IVPNAA--T-F-VGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-- 533 (680)
Q Consensus 463 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~--~-~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 533 (680)
....+..+...+...|++++|...+.+..... ...... . . ...+..+...|+.+.|.+++...........
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 689 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh
Confidence 13344556677888999999999998875421 111111 1 1 1122344568899999999877653211111
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 534 -LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 534 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...+..+..++...|++++|...+++. +..+ ...+...+..++...|+.++|...+.+++++....
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 111345677788999999999988876 1222 13456667778889999999999999999977554
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.00095 Score=65.66 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCc-hHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFES-NVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 379 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
.+...+.++++...-..--..+|...++...+...+..|..+|.++.+.+..+ ++.+.++++..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55566666666543222223456667777777777788888888887776555 67777777776663 56667777776
Q ss_pred cCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 458 SISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 458 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
--.+ .++.--...+.-+...++-..|..+|++....++.|+ ...|..++.-=..-|+...+.++-++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5443 2333334455555666666777777777776655554 3556666665566666666666665555
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.58 E-value=7.3e-06 Score=77.87 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
..+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ . ..+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--e-D~~l~ 167 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-------------------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--E-DSILT 167 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--C-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc-------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-cHHHH
Confidence 3445566666666666543 134445556666777777777777777766532 2 23333
Q ss_pred HHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHH
Q 005732 403 VLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYS 475 (680)
Q Consensus 403 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 475 (680)
.+..++.. .+.+..|..+|+++.+. .++++.+.+.+..+....|++++|.+++++... .++.+...++.+..
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 33333221 22455555555554433 234444445555455555555555554444332 22333333333334
Q ss_pred HcCCh-hHHHHHHHHHHH
Q 005732 476 HHGLG-SEAVLLFEIMLE 492 (680)
Q Consensus 476 ~~~~~-~~A~~~~~~m~~ 492 (680)
..|+. +.+.+++.++..
T Consensus 247 ~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HTT-TCHHHHHHHHHCHH
T ss_pred HhCCChhHHHHHHHHHHH
Confidence 44443 334444444443
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=5.8e-06 Score=89.21 Aligned_cols=200 Identities=13% Similarity=0.117 Sum_probs=160.3
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS--------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT 501 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 501 (680)
|.+...|-..|......++.+.|.++++++.. .-...|.++++.-...|.-+...++|+++.+ +--.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 55666777778888888899999888887763 2245777888777777877888899999887 3333567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 005732 502 FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL---DAVVWGALLSACW 577 (680)
Q Consensus 502 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~ 577 (680)
|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+..+-++|..+++++ ..-| ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888888999999999999999999842 2356788888999999999999999998876 3233 3445556666677
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
+.|+.+++..+|+..+...|.-...|..+++.-.++|..+.+.++|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998889999999999999999999999999887653
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.9e-05 Score=80.05 Aligned_cols=235 Identities=16% Similarity=0.152 Sum_probs=174.9
Q ss_pred CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCC
Q 005732 281 NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360 (680)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (680)
+|....-..+...+...|-...|..+++++ ..|..++.+|+..|+..+|..+..+..++ +
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---------------~ 454 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---------------D 454 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---------------C
Confidence 333334455667777788888888888766 45677788888889889998888887773 6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
|++..|..+.+......-+++|.++.+..-.. .-..+.....+.++++++.+.++.-.+.. +....+|..+.
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G 526 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLG 526 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhcc
Confidence 88899999998888888889999988775332 11111222234688899999998888776 66778888888
Q ss_pred HHHHhcCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 005732 441 DMYSRCGSINDAQASFSSISS--P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 517 (680)
.+..+.++++.|.+.|..... | +...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.++.
T Consensus 527 ~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHH
Confidence 889999999999999987764 4 4678999999999999999999999999987733 45556666666788999999
Q ss_pred HHHHHHHHHhcC-CCCChhHHHHHHHHH
Q 005732 518 GMKIFRSMKSYG-VVPTLEHYTCVVDLL 544 (680)
Q Consensus 518 A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 544 (680)
|++.+.++.+.. ...|..+...++...
T Consensus 606 a~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 999999887221 122444444444443
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.7e-05 Score=68.32 Aligned_cols=152 Identities=15% Similarity=0.071 Sum_probs=86.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 519 (680)
...|+..|++++|.+.......-.....+ +..+.+..+.+-|.+.+++|.+ +. +..|.+.|..+|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~-------- 181 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVK-------- 181 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHH--------
Confidence 34455666666666666553322222222 2233445555666666666655 21 44555555554432
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.....+.+.+|.-+|+++ +..|++.+.+..+.++...|++++|+.+++.++..++
T Consensus 182 -----------------------la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 182 -----------------------LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred -----------------------HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 222334556666666666 2566666776666666777777777777777777777
Q ss_pred CCCchHHHHHHHHHhcCCchHHH-HHHHHHh
Q 005732 598 KPISAYVILSNIYAVLGKWGKKM-DIRKRLT 627 (680)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 627 (680)
+++.++.+++..-...|+-.++. +.+.+++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 77777777776666666654443 3344444
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.4e-05 Score=71.01 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
..+-..+...|+-+....+........ ..|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334455556666666666555544321 1133344445666666777777777777766433 45666777777777777
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 548 GHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 548 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
|++++|..-+.+. .+.| ++..++.+...+.-.|+.+.|+.++.++....+.+..+-..|+.+....|++++|.++...
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777666655 3334 4566677777777777777777777777777777767777777777777777777776533
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=1.1e-07 Score=56.67 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred cccCccchhhHHHHHhhcCCChhHHHHhhccCC
Q 005732 13 TQETLIVSTNKAITECGRNGQLVTARNLFDQMP 45 (680)
Q Consensus 13 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 45 (680)
+.+||+.+|+.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 457888888888888888888888888887774
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.47 E-value=2.4e-06 Score=70.64 Aligned_cols=95 Identities=9% Similarity=-0.020 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
...-.+...+...|++++|.++|+.+ ...| +...|..|+.+|...|++++|+..|.++..++|+++.++.+++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33445566778899999999999987 4555 677888999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhC
Q 005732 613 LGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~ 629 (680)
.|+.+.|.+-|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=1.3e-05 Score=71.19 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 573 (680)
.|+......+-..+...|+-+....+....... ...|......++....+.|++.+|+..+.+. ..++|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 454333355666777788888888777776532 2446667777999999999999999999998 4567899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.+|.+.|+.++|...|.+++++.|+++.++.+++..|.-.|+++.|..++......+.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999876654
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=7.2e-06 Score=82.91 Aligned_cols=187 Identities=15% Similarity=0.140 Sum_probs=97.6
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
+|-...-..+...+...|-...|..+|+++ ..|...+-+|+..|+..+|..+..+-.+ -+|+..-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444444455556666666666666666543 3455556666666666666666655555 345566666655555
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| ...+|..++.+..+.+++..|..
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 4444455555555544321 0011111122245555555555532 3222 34455555555555555555555
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 588 AAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|.+.+.++|++..+|+++..+|.+.|+..+|...+++..+-+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5555555555555555555555555555555555555554433
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=2.9e-05 Score=82.71 Aligned_cols=139 Identities=8% Similarity=-0.016 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 541 (680)
++..+..|.....+.|++++|+.+++...+ +.|+ ......+...+.+.+.+++|...+++..... +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 466666677777777777777777777777 5565 3445556666777777777777777777543 22455556666
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDMP-IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
.++.+.|++++|..+|+++- ..| ++..+..+..++...|+.++|...|+++++...+-...|.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 67777777777777777762 233 3666777777777777777777777777776555434433
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=4.8e-05 Score=68.15 Aligned_cols=154 Identities=11% Similarity=0.171 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 519 (680)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ ..|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777655543332221 01223566778888888887754 235788888888999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLL-GRSGH--LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
..+++...... .+...+..+..++ ...|+ .++|.+++++. ...| +...+..++..+...|++++|+..++++++
T Consensus 94 ~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999987653 3677777778764 67777 59999999988 4455 678888888899999999999999999999
Q ss_pred CCCCCCchH
Q 005732 595 LDKKPISAY 603 (680)
Q Consensus 595 ~~p~~~~~~ 603 (680)
..|.+..-+
T Consensus 173 l~~~~~~r~ 181 (198)
T PRK10370 173 LNSPRVNRT 181 (198)
T ss_pred hCCCCccHH
Confidence 988875443
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=5.4e-06 Score=69.86 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.....+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445556666777777777777665 2233 566777777777778888888888888888888887888888888888
Q ss_pred cCCchHHHHHHHHHhhC
Q 005732 613 LGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~ 629 (680)
.|++++|.+.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777664
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=8.8e-05 Score=79.83 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
++..+...|...++++++..+++.+++.+|.+..+...++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33344445555666677777777777777666666666666554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=7.4e-05 Score=79.67 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=119.1
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005732 428 PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV 503 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 503 (680)
..+.+...+..|.....+.|..++|..+++.+.+ |+ ...+..+...+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3467788999999999999999999999999875 54 557777889999999999999999999984 465 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALL 573 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 573 (680)
.+..++.+.|++++|..+|+++...+ +.+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77788899999999999999999833 345788899999999999999999999987 3445555555544
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=7.6e-07 Score=53.06 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 529 GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00026 Score=68.86 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=112.2
Q ss_pred HHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHH
Q 005732 324 GYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT-RSTFS 402 (680)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 402 (680)
.+...|+.++|+..+..+.+.. |.|+..+....+.+.+.++..+|.+.++++... .|+ .....
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--------------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~ 378 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--------------PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQL 378 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHH
Confidence 4456788888888888877764 566777777788888999999999999988874 455 44556
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 482 (680)
.+..++.+.|++.+|..+++...... +.++..|..|.++|...|+..++... ....+...|++++
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~ 443 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHH
Confidence 66778888888888888888887776 77888889999999988888877754 3456778888999
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 005732 483 AVLLFEIMLEQDIVPNAATF 502 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~ 502 (680)
|+..+....+.. +++..++
T Consensus 444 A~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 444 AIIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHHHHhc-cCCcHHH
Confidence 988888887652 4444443
No 128
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=8.1e-05 Score=71.78 Aligned_cols=188 Identities=10% Similarity=0.036 Sum_probs=138.2
Q ss_pred HHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--H
Q 005732 442 MYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHG-LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL--V 515 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~ 515 (680)
.+...++.++|.....++.+ .+..+|+....++...| ++++++..++++.+.+.+ +...|..-...+.+.|. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 34455677888888887765 33446666666666677 579999999999986533 34556655444555555 3
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW---MN----MEVGE 586 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~a~ 586 (680)
+++..+++++.+... -+...|+....++...|+++++++.++++ ...| +...|+.....+.+. |. .++++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 678888888886553 46788888888899999999999999998 3334 677777777666544 22 35788
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
.+..++++.+|++..+|..++.++.. .++..+|.+.+.++.+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 88899999999999999999999988 3556778888888766443
No 129
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=0.0001 Score=68.96 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDI-VP-NAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
+...+.+.|++++|+..+++..+... .| ....+..+..++.+.|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445556666666666666555321 11 13445555555666666666666555554
No 130
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00018 Score=78.32 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=116.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhcc-C-------ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhccc
Q 005732 287 SNSLINGLISMGRIEDAELIFNRLTE-A-------NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPE 358 (680)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 358 (680)
|-..+.-..+.++.++|.++.++... - -...|.++++.-..-|.-+...++|+++.+..
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------------- 1527 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------------- 1527 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------------
Confidence 44444555555555555555555544 1 11234444444444455666667777666643
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHH
Q 005732 359 MERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGT 437 (680)
Q Consensus 359 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 437 (680)
.....|..|...|.+.+++++|.++|+.|.+. .......|...+..+.+..+-+.|..++.++.+.-. ........
T Consensus 1528 --d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1528 --DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred --chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 22345666777777777777777777777653 234455666666666677666777777766665421 11333444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005732 438 SLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN 498 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 498 (680)
..+..-.+.|+.+.+..+|+.... .-...|+..+..-.++|+.+.+..+|++....++.|-
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 445555566777777777766653 2355677777777777777777777777777666554
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.1e-05 Score=73.15 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=46.3
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~ 586 (680)
..+.+++.+|+..|.+.....+ -|...|..=..+|.+.|.++.|++-.+.. .+.|. ...|..|..++...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555554321 13334444445555555555555555444 33442 445555555555555555555
Q ss_pred HHHHHHHcCCCCCC
Q 005732 587 RAAQKMFGLDKKPI 600 (680)
Q Consensus 587 ~~~~~~~~~~p~~~ 600 (680)
+.|+++++++|++.
T Consensus 170 ~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 170 EAYKKALELDPDNE 183 (304)
T ss_pred HHHHhhhccCCCcH
Confidence 55555555555553
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00061 Score=66.39 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=101.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT-FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGR 546 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 546 (680)
...-.+...|++++|+..++.++.. .|+... .......+.+.++..+|.+.++++.... |+ ....-.+..+|.+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~ 386 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHh
Confidence 3344456778888888888888773 455444 4444567788888888888888888643 33 5555567788888
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005732 547 SGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 547 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
.|++.+|+.+++.. ..+.|+..|..|..+|...|+..++... .+..|...|+|+.|...+.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 88888888888876 3444788888888888888887766543 4556667788888888888
Q ss_pred HHhhCC
Q 005732 625 RLTHLE 630 (680)
Q Consensus 625 ~~~~~~ 630 (680)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 777654
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0066 Score=60.04 Aligned_cols=162 Identities=12% Similarity=0.062 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
..+|...|+...+....+.|..+|.++.+.+..+ +......++.-+ ..++.+.|.++|+.-.+. +..++......++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3456666666666666777777777777766666 445555555543 346677777777765532 2233444456666
Q ss_pred HHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC----CchHHHHHHHHHhc
Q 005732 543 LLGRSGHLHEAEEFIKDMP---IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP----ISAYVILSNIYAVL 613 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 613 (680)
.+...++-..|..+|++.- ..| ...+|...+.--..-|+.+.+..+-++.....|.+ ...-...+.-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 6777777777777777661 233 24667777766667777777777777777766632 12344455556566
Q ss_pred CCchHHHHHHHHHh
Q 005732 614 GKWGKKMDIRKRLT 627 (680)
Q Consensus 614 g~~~~A~~~~~~~~ 627 (680)
+.+..-..-++.+-
T Consensus 524 d~~~c~~~elk~l~ 537 (656)
T KOG1914|consen 524 DLYPCSLDELKFLG 537 (656)
T ss_pred ccccccHHHHHhhh
Confidence 66555555555444
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.0005 Score=74.25 Aligned_cols=242 Identities=13% Similarity=0.070 Sum_probs=127.1
Q ss_pred cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHH
Q 005732 211 SGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSL 290 (680)
Q Consensus 211 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 290 (680)
.+..|.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+...++..++..+ .+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~----------- 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL----------- 89 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh-----------
Confidence 34444455666666666666777777776666555442 22233333333355555555544443 11
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc--CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTE--ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNS 368 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (680)
+.......++.-...+...+.. .+..++..+..+|-+.|+.+++..+++++.+.+ +.|+.+.|.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------~~n~~aLNn 155 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------------RDNPEIVKK 155 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------cccHHHHHH
Confidence 1111222222222223333333 233466677777777888888888888887776 567777777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCC
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGS 448 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (680)
+...|... +.++|.+++.+.... +....++..+..+|..+.... +.+...+..+.+.....-.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhc
Confidence 77777777 788888777776542 334445566666666666554 2222222222222211100
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 449 INDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
.. .-+.++-.+...|...+++++++.+++.+.+...+ |.....-++.+|
T Consensus 219 ~~-----------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 219 FT-----------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred cc-----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 11 12233334445555556666666666666653322 334444444444
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00022 Score=63.62 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 437 TSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEA-VLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
..+.++|...|.......-......+.......+......-++.+.- .++.+.+.......+......-...|++.|++
T Consensus 45 ~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~ 124 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDF 124 (299)
T ss_pred HHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCCh
Confidence 33445566666655544444444444444444444444444444433 34455555555554544455555678999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQK 591 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 591 (680)
++|.+...... +......=+..+.+..+++-|.+.+++|..-.+..+.+.|..++.+ .+.+..|.-+|++
T Consensus 125 deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE 198 (299)
T KOG3081|consen 125 DEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEE 198 (299)
T ss_pred HHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 99998887622 2233333346677889999999999999655677888888888765 3468999999999
Q ss_pred HHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 592 MFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 592 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+-+..|..+......+.++...|+|++|..+++..+.+..
T Consensus 199 ~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 199 LSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9997777778999999999999999999999999988754
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=5.4e-05 Score=63.71 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=89.7
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005732 486 LFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE 563 (680)
Q Consensus 486 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 563 (680)
.++++.. ..|+ ......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|.+.++.. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555 3444 3445566677888899999999998888654 346778888888999999999999988877 334
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 564 L-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 564 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
| +...+..+...+...|++++|...++++++.+|++...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4 67788888889999999999999999999999988553
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=4.2e-05 Score=75.15 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWM 580 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g 580 (680)
..|+..+...++++.|+++++++.+.. |+ ....++..+...++-.+|.+++++. . .+.+...+......|...+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344555555667777777777777543 33 3334566666667777777777765 2 2336666666677788899
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+++.|+.+.+++.+..|++-.+|..|+.+|...|++++|+-.++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999998887654
No 138
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.16 E-value=0.0085 Score=58.01 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=73.8
Q ss_pred hhcCCChhHHHHhhccCCCC---C------hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--Hhc
Q 005732 28 CGRNGQLVTARNLFDQMPIR---T------VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSV--CAQ 96 (680)
Q Consensus 28 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~--~~~ 96 (680)
+.+++++.+|.++|.++-+. + ...-+.+|++|... +.+.....+...++. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45788999999999887521 2 23456777887654 566666666666553 23 3334444443 346
Q ss_pred cCChHHHHHHHHHHHHh--CCC------------CcchhhhhHHHHHHcCCChHHHHHHHhhhcC
Q 005732 97 LNSLIDGKQIHCLVLKS--GYE------------CFEFVGSGLLFFYANCFEIEEAKRVFDELHE 147 (680)
Q Consensus 97 ~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (680)
.+.+..|.+.+..-.+. +.. +|-..-+..++.+...|++.+++.+++++.+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 77888888877666554 221 2223335567778888888888888888753
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00013 Score=64.48 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHh---cC-CCchHhH-HHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHH-HHHHHHcCChhHH
Q 005732 412 GSLQQGQLLHAHLVK---TP-FESNVYV-GTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTAL-MNGYSHHGLGSEA 483 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~A 483 (680)
.+.++..+++.++.. .| ..++..+ |..++-+...+|+.+.|...++.+.. |...-...| ..-+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344555555555543 22 3444443 44455566667888888888777653 221111111 1123446778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
+++++...+.+ +.|..++..-+...-..|...+|++-+....+. +..|...|.-+...|...|++++|.-.++++ -.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888765 334566666666666677777777777766643 5668888888888888888888888888887 34
Q ss_pred CC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCch
Q 005732 563 EL-DAVVWGALLSACWFWM---NMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.| ++..+..+...+.-.| +.+.|..+|.+++++.|.+...
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 44 5666666666554433 5677788888888888855333
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=6.2e-06 Score=59.73 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHhhC
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG-KWGKKMDIRKRLTHL 629 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 629 (680)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999998764
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=4.7e-05 Score=62.43 Aligned_cols=94 Identities=14% Similarity=-0.009 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSN 608 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 608 (680)
+-.++..+.+.|++++|.+.++.+ ...|+ ...+..++.++...|++++|...++++.+..|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555666666666666555 12222 3345556666667777777777777777766664 345666677
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++...|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 7777777777777777766653
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00031 Score=59.66 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh--hHHHHHHH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTL--EHYTCVVD 542 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~ 542 (680)
|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+.+......+.. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 35666666666666665421110 122333445555666666666666666654322221 12223444
Q ss_pred HHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 543 LLGRSGHLHEAEEFIKDMPI-ELDAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
.+...|++++|+..++.... ...+..+...+.++...|++++|...|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 45555555555555544421 112333344444445555555555555443
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.06 E-value=4.2e-06 Score=63.32 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005732 547 SGHLHEAEEFIKDM-PIEL---DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
.|+++.|+.+++++ ...| +...+..++.++.+.|++++|..++++ .+.+|.++.....++.++...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666665 2222 344555567777778888888888877 666776666666778888888888888887
Q ss_pred HHH
Q 005732 623 RKR 625 (680)
Q Consensus 623 ~~~ 625 (680)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=7.4e-05 Score=73.96 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=71.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNME 583 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 583 (680)
...+...|++++|++.|+++..... .+...|..+..+|.+.|++++|+..++++ ...| +...|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3455667778888888877776542 34566667777777777777777777776 3444 5666777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 584 VGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 584 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
+|+..|+++++++|+++.....+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777776665555444
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.04 E-value=1.2e-05 Score=57.33 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++..+...|++++|+..|+++++..|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677889999999999999999999999999999999999999999999999987654
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=5.9e-05 Score=58.82 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777788888888888876 3334 44667777888888899999999999999999998888999999999999
Q ss_pred CchHHHHHHHHHhhCC
Q 005732 615 KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~~ 630 (680)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=8.4e-06 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE 84 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (680)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888899999999999999999999888888873
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.4e-06 Score=48.91 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKL 82 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (680)
.+|+.+|.+|++.|+++.|..+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888887776
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00048 Score=60.99 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=147.3
Q ss_pred cCChHHHHHHHhcCCC--------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCH
Q 005732 446 CGSINDAQASFSSISS--------PNV-AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV-LSACVRAGLV 515 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~ 515 (680)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++..+- |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4578888888877652 333 345666777788999999999999998753 553322222 2334567999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
++|+++++.+.+.+ +.|..++-.=+-.....|+--+|++-+.+. .+..|...|..+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999765 456677776666777788888888877766 466799999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhcC---CchHHHHHHHHHhhCCCccCCc
Q 005732 594 GLDKKPISAYVILSNIYAVLG---KWGKKMDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 636 (680)
=..|-++..+..++.+++-.| +..-|.+++.+..+...+...+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 999999999999999988766 6778999999998876644444
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00011 Score=69.65 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=71.7
Q ss_pred HHHhcCChHHHHHHHhcCCCCCHH-HHHHHHH--HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005732 442 MYSRCGSINDAQASFSSISSPNVA-AWTALMN--GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 518 (680)
++.-.|+.++|.+.--.+.+.|.. .+...++ ++.-.++.+.|+..|++.+. ..|+...-...-..+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~--------- 246 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMP--------- 246 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhH---------
Confidence 444556666666555444432221 2222222 33445666777777777666 345543322211110
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-----IELDAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
+.++.....| +-..+.|++.+|.+.+.+. . ..|++..|........+.|+.++|+.-.+.+
T Consensus 247 -k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 247 -KKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred -HHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 1111111111 2233444444444444443 2 2222333333333344455555555555555
Q ss_pred HcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 593 FGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 593 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++++|.-..++...+.++...++|++|.+-+++..
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544445555555555555555555554444
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.0003 Score=59.80 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDA----VVWGAL 572 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l 572 (680)
..|..++..+ ..++...+...++.+........ ....-.+...+...|++++|.+.|+.. ...|++ .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47888999999999986432221 223334567788999999999999988 333443 244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
...+...|++++|+..++.. ...+-.+..+..+|.+|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788899999999999773 233334567889999999999999999999864
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00033 Score=69.01 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
...|+..+...++++.|..+|+++.+.++.....+++.+...++..+|++++++..+.. +-+...+..-...|...+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455666667788888888888887666666667788888888888888888888643 22455555566677888889
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPI 562 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (680)
+.|.++.+++.... +.+..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999998888653 33566888889999999999999988888863
No 153
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.016 Score=54.94 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=174.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 372 GYVQNNLHEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 372 ~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
+-.-.|+++.|.+-|+.|... |.. .-+..+.-...+.|..+.|..+-+..-+.- +.-.....+.+...|..|++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 344579999999999999752 221 123333444457899999999888877765 55667888999999999999
Q ss_pred HHHHHHHhcCC-----CCCHH--HHHHHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHH
Q 005732 450 NDAQASFSSIS-----SPNVA--AWTALMNGYS---HHGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 450 ~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A 518 (680)
+.|+++++.-. +++.. .-..|+.+-. -..+...|...-.+..+ +.||.. .-.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99999998654 24432 1222332211 12345566665555555 677733 334456788999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
-.+++.+-+....|+. +.. ....+.|+. +..-+++. ..+| +..+...+..+....|++..|..--+.+.
T Consensus 283 ~~ilE~aWK~ePHP~i--a~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKAEPHPDI--ALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhcCCChHH--HHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 9999999987655553 322 234455543 33333322 2344 56777788888889999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCCcee
Q 005732 594 GLDKKPISAYVILSNIYAVL-GKWGKKMDIRKRLTHLEVKKDPGCS 638 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (680)
...|.. .+|..|+++-... |+-.++...+-+..+. ..+|.|+
T Consensus 357 r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~ 399 (531)
T COG3898 357 REAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWT 399 (531)
T ss_pred hhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccc
Confidence 999987 7888999988876 9999999998777653 3456554
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00013 Score=66.83 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=92.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHcCCCCCCchHHH
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWF---WMNMEVGERAAQKMFGLDKKPISAYVI 605 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 605 (680)
+-|...|-.|...|...|++..|...|.+. .+ .+++..+..+..++.. .....++..+++++++++|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557889999999999999999999999987 33 4467888888877654 235788999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCCCccCCcee
Q 005732 606 LSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCS 638 (680)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (680)
|+..+...|++.+|...|+.|.+.....+|+.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999998776666543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00016 Score=59.13 Aligned_cols=103 Identities=9% Similarity=-0.047 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVV--PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALL 573 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 573 (680)
++..+...+...|++++|.+.|..+...... .....+..+..++.+.|++++|.+.++.+ ...|+ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666666643211 11334455666777777777777777765 22232 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 788888999999999999999888875443
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.2e-05 Score=47.61 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR 398 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 398 (680)
+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999988873
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.85 E-value=0.059 Score=57.04 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=80.9
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHH
Q 005732 60 SKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC--AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEE 137 (680)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (680)
...+++..|.....++.+. -||. .|..++.++ .+.|..++|..+++.....+.+ |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4566788888887777654 2333 344444443 4677888888777777666655 77778888888888888888
Q ss_pred HHHHHhhhcCCc--hhHHHHHHHHHHhcCChh----hHHHHhccCCCCCeeeHHHHHHHHHhC
Q 005732 138 AKRVFDELHEDN--ELLWSLMLVGYVQCNLMS----DAFDVFIKMPKKDVVVWTKLISGYAKS 194 (680)
Q Consensus 138 a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~ll~~~~~~ 194 (680)
|..++++....+ ......+..+|++.+.+. .|+++++..++. ...+-.+++...+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHh
Confidence 888888876543 333444555666655553 355666544433 33333444444443
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.85 E-value=0.06 Score=56.99 Aligned_cols=158 Identities=14% Similarity=0.082 Sum_probs=93.9
Q ss_pred hHHHHHHHhcccCChH---HHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQ---QGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMN 472 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~ 472 (680)
+.+.++..|.+.++.. +|+-+++...... +.+..+--.+++.|+-.|-...|.++|+.+.- .|+..|. +.+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3456777888887765 3444444444443 55666667789999999999999999998863 3433332 334
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH---HHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIF---RSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
.+...|++..+...++....- ...+ ..+-..+..+| +.|.+.+..+.. +++..........+-+..++.++..+
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455667777777777665441 0001 12222233333 445555544332 23332222223344566777788888
Q ss_pred ChHHHHHHHHhCC
Q 005732 549 HLHEAEEFIKDMP 561 (680)
Q Consensus 549 ~~~~A~~~~~~~~ 561 (680)
+.+.-...++.|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888888888774
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0016 Score=54.69 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 005732 495 IVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL---DAVVWG 570 (680)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~ 570 (680)
..|....-..|..+..+.|+..+|...|.+...--+-.|....-.+..+....+++..|...++++ ...| ++....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666777888888888888888888876656677777878888888888888888888876 2222 233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+...+...|.+..|+..|+.++...|+. ......+..+.++|+.++|..-+..+.+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 56777888999999999999999988886 56666778888899888887766665543
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=3.2e-05 Score=46.51 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR 396 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 396 (680)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888876
No 161
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.80 E-value=0.04 Score=53.41 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLA-IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
...|...+....+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...- +.++.-.+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456666666666666778888888888777 5667777777777665 456667777776554442 333333345566
Q ss_pred HHHhcCChHHHHHHHhcCCC---CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 442 MYSRCGSINDAQASFSSISS---PN--VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
.+...++-+.|..+|+...+ .+ ...|..++.--..-|+...+..+=++|.+ +.|...+.....+-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 66777888888888875542 12 34677777777777777777777777777 5566555555554443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00026 Score=62.30 Aligned_cols=94 Identities=18% Similarity=0.079 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
.+..+...+...|++++|...+++. ...|+ ...+..++..+...|++++|...++++++..|+++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555556666666666666654 21221 346677777777888888888888888888888877777888888
Q ss_pred HhcCC--------------chHHHHHHHHHhhC
Q 005732 611 AVLGK--------------WGKKMDIRKRLTHL 629 (680)
Q Consensus 611 ~~~g~--------------~~~A~~~~~~~~~~ 629 (680)
...|+ +++|.+.+++....
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 77766 45566666555543
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.025 Score=54.26 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCC--hh
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-----PNAA-TFVGVLSACVRAGLVNEGMKIFRSMKSY--GVVPT--LE 535 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~ 535 (680)
.+..+...+.+.|++++|+++|++....... .+.. .|...+-++...||+..|.+.+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445667788889999999999888764322 1221 2333444566788888998888888743 33333 33
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHH
Q 005732 536 HYTCVVDLLGR--SGHLHEAEEFIKDMPIELDAVVWGAL 572 (680)
Q Consensus 536 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l 572 (680)
....|+.++.. ...+++|+.-|+.+. +.|...-..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 45566666654 345677777777764 3444433333
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00036 Score=63.64 Aligned_cols=99 Identities=20% Similarity=0.124 Sum_probs=78.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..=..+|.+.|.++.|++-.+.....+ +.....|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 446788999999999999999 5554 5666677788999999999999888888643 22467888999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Q 005732 551 HEAEEFIKDM-PIELDAVVWGALL 573 (680)
Q Consensus 551 ~~A~~~~~~~-~~~p~~~~~~~l~ 573 (680)
++|++.|++. .+.|+-.+|..-+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999887 7888766664433
No 165
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.72 E-value=0.054 Score=52.74 Aligned_cols=238 Identities=10% Similarity=0.085 Sum_probs=127.5
Q ss_pred HHHHHHHHHCCCCCChhh-HHHHHHHhcccCChHHHHHHHHHHHhcCCC----chHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 383 LQLYMTMRKLAIDRTRST-FSVLFHACSCLGSLQQGQLLHAHLVKTPFE----SNVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
++++......-+.|+... ...+...+.. +.+++..+.+.+....+. --..++..++....+.++...|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444445555432 2333333333 455555555444433211 123456666677777777777777665
Q ss_pred cCC--CCCHHHHH-------HHHHHHH----HcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHhccCC-HHHHH
Q 005732 458 SIS--SPNVAAWT-------ALMNGYS----HHGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLS---ACVRAGL-VNEGM 519 (680)
Q Consensus 458 ~~~--~~~~~~~~-------~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~---~~~~~g~-~~~A~ 519 (680)
-+. .|+...-. .+-+..+ ..-+..+=+.+|+......+ |.. ....|+. -+-+.|. -++|+
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 543 23222111 1111111 11123334556666655332 321 1112222 2233444 77888
Q ss_pred HHHHHHHhcCCCCChhHHHHHH----HHHHhc---CChH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHH
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVV----DLLGRS---GHLH---EAEEFIKDMPIEL----DAVVWGALLSA--CWFWMNME 583 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~ 583 (680)
++++.+.... .-|..+-|... .+|.++ ..+. +-+.++++.+++| +...-+.|..| +..+|++.
T Consensus 401 nLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 401 NLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 8888887432 22333333221 222221 1222 2233455556555 34455666665 45789999
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 584 VGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 584 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
++.-+-.-..+..| ++.+|..+|-.+....+++||..++..+
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99988888889999 6799999999999999999999998765
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=3.7e-05 Score=55.43 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=46.0
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...|++++|+..|+++++.+|+++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999899999999999999999999999887764
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.72 E-value=0.0001 Score=53.96 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..+...+++++|..+++++++.+|+++..+...+.++...|++++|.+.+++..+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4677899999999999999999999999999999999999999999999999987654
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.00072 Score=66.99 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=82.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
....+...|++++|+..|+++++... -+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 45567788999999999999998542 246778888889999999999999999999764 3367788889999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHH
Q 005732 550 LHEAEEFIKDM-PIELDAVVWGALL 573 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p~~~~~~~l~ 573 (680)
+++|+..|++. ...|+.......+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999987 5666544444333
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.00039 Score=60.91 Aligned_cols=93 Identities=10% Similarity=-0.146 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
...+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777778888888887776 22222 3578888889999999999999999999999998888888888
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 005732 609 IYA-------VLGKWGKKMDIRKRL 626 (680)
Q Consensus 609 ~~~-------~~g~~~~A~~~~~~~ 626 (680)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666543
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.0024 Score=66.15 Aligned_cols=137 Identities=14% Similarity=0.008 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHH--c---CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHHHh
Q 005732 462 PNVAAWTALMNGYSH--H---GLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRA--------GLVNEGMKIFRSMKS 527 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 527 (680)
.+...|...+++... . +....|..+|++..+ ..|+ ...+..+..++... ++...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666655332 2 235688888888888 5576 34444433322211 111222222222222
Q ss_pred c-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 528 Y-GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 528 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
. ....+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|...+++++.++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1 12223344544444444455566665555555 3445555555555555556666666666666666665554
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0018 Score=56.90 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 541 (680)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+... .+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34455566666666777777777776665332222 24555566666666777777766666664321 1344444555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 542 DLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
.++...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 5555555544443222211 123678888899999988887 444444444444
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7.3e-05 Score=43.75 Aligned_cols=31 Identities=29% Similarity=0.733 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNV 80 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 80 (680)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00016 Score=54.63 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005732 513 GLVNEGMKIFRSMKSYGVV-PTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELD-AVVWGALLSACWFWMNMEVGERAAQ 590 (680)
Q Consensus 513 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 590 (680)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|.+++++.+..|. ......++.++...|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4444444444444432221 1222333344455555555555555544322222 2223333444455555555555554
Q ss_pred H
Q 005732 591 K 591 (680)
Q Consensus 591 ~ 591 (680)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=97.57 E-value=0.0019 Score=54.06 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=75.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
.-+...|++++|..+|.-+ -.. -++..+..|..++...|++++|+..|..+..+++++|.+.+..+..|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3456789999999999877 223 36777888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 005732 620 MDIRKRLTH 628 (680)
Q Consensus 620 ~~~~~~~~~ 628 (680)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999988765
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.0002 Score=50.96 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=50.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
+...+.+.|++++|.+.|+++ ...| +...+..++.++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999887 4455 677888888999999999999999999999999874
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0083 Score=57.59 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMR 390 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~ 390 (680)
.|......|-..+++++|.+.|.+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45555666777777777777776664
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0013 Score=50.91 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 585 (680)
.+...|++++|...++++.+... .+...+..+...+...|++++|.+.++.. ...| +...+..+...+...|+++.|
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 33344444444444444443211 12233344444455555555555555543 2122 334555566666666777777
Q ss_pred HHHHHHHHcCCC
Q 005732 586 ERAAQKMFGLDK 597 (680)
Q Consensus 586 ~~~~~~~~~~~p 597 (680)
...++++++..|
T Consensus 88 ~~~~~~~~~~~~ 99 (100)
T cd00189 88 LEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHccCC
Confidence 777777666655
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.055 Score=51.99 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHhcCChHHHHHHHhcCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 005732 443 YSRCGSINDAQASFSSISS-------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGL 514 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 514 (680)
..+.|++..|.+.|.+... ++...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777766653 3445565566666677777777777776665 3322 2222223334555677
Q ss_pred HHHHHHHHHHHHh
Q 005732 515 VNEGMKIFRSMKS 527 (680)
Q Consensus 515 ~~~A~~~~~~~~~ 527 (680)
|++|.+-++...+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777664
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.00073 Score=63.13 Aligned_cols=93 Identities=11% Similarity=-0.018 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSN 608 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 608 (680)
|...+..+.+.|++++|...|+.+ ...|+ +..+..++.++...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567777777777665 22333 3455667777778888888888888888777775 445666677
Q ss_pred HHHhcCCchHHHHHHHHHhhC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++...|++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 787888888888888877664
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.004 Score=54.51 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444445555555555555555555554321111 1244444455555555555555555544
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.45 E-value=0.00017 Score=42.13 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAI 394 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 394 (680)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887663
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.006 Score=63.28 Aligned_cols=137 Identities=11% Similarity=0.044 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC
Q 005732 494 DIVPNAATFVGVLSACVR--A---GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS--------GHLHEAEEFIKDM 560 (680)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 560 (680)
+...|...|...+.+... . ++...|..+|++..+..+. ....|..+..++... +++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345677888888887543 2 3477899999999975422 344555544444322 1233444544442
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 561 ----PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 561 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
....++..+..+.......|++++|...++++++++|. ...|..++.++...|+.++|.+.+++.....+.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 13345677888877777889999999999999999994 688999999999999999999999999876543
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.018 Score=53.48 Aligned_cols=174 Identities=10% Similarity=-0.004 Sum_probs=103.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--CCH-H---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005732 438 SLVDMYSRCGSINDAQASFSSISS--PNV-A---AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 511 (680)
.....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455667888888888877764 322 1 1234556777888888888888888774322222333333333321
Q ss_pred --c---------------CCH---HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005732 512 --A---------------GLV---NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGA 571 (680)
Q Consensus 512 --~---------------g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 571 (680)
. .+. ..|.+.|+.+++ .|=...-..+|...+..+.... ...-..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 111 223334444432 2222222334443333331010 111123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+..-|.+.|.+..|..-++.+++..|+.+ ++...++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44557889999999999999999999864 457888999999999999999887664
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.41 E-value=0.0007 Score=66.29 Aligned_cols=67 Identities=13% Similarity=-0.099 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA---YVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.++..++.+..+|...|++++|+..|+++++++|+++.+ |++++.+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3468889999999999999999999999999999998754 999999999999999999999998875
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.00024 Score=51.12 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=34.4
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHH
Q 005732 546 RSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVIL 606 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 606 (680)
+.|++++|+++++++ ...| +...+..++.++.+.|++++|..+++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455566666666555 2223 555555666666666666666666666666666654444333
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=0.0001 Score=43.87 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.0
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 589 AQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999863
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0075 Score=57.59 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA-CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888899999999988543 2233444443333 44467777899999988854 55677888888899
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 544 LGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+.+.++.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987 22233 3478888888888999999999999998888775
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0028 Score=48.74 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=68.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCcchh
Q 005732 51 SWNTMLCGYSKWAKFDESLSLVSTMHRSNV-KLNETTFSTILSVCAQLN--------SLIDGKQIHCLVLKSGYECFEFV 121 (680)
Q Consensus 51 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 121 (680)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .....+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999987643 34557789999999999999999
Q ss_pred hhhHHHHHHc
Q 005732 122 GSGLLFFYAN 131 (680)
Q Consensus 122 ~~~l~~~~~~ 131 (680)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.35 E-value=0.0021 Score=63.70 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=63.4
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc--CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHH
Q 005732 393 AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAA 466 (680)
Q Consensus 393 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 466 (680)
+.+.+...+..+++.+....+.+.+..++-..... ....-+.+..++++.|...|..+.+.++++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777776666654 2222233334555555555555555555544332 55555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555555554444444444444444443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.32 E-value=0.0043 Score=49.79 Aligned_cols=86 Identities=10% Similarity=-0.080 Sum_probs=55.7
Q ss_pred HHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC---CCchHHHHHHHHHhc
Q 005732 542 DLLGRSGHLHEAEEFIKDM---PIELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK---PISAYVILSNIYAVL 613 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 613 (680)
.++-..|+.++|+.++++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555555555555544 11111 334556667777788888888888888877777 555566677777888
Q ss_pred CCchHHHHHHHHHh
Q 005732 614 GKWGKKMDIRKRLT 627 (680)
Q Consensus 614 g~~~~A~~~~~~~~ 627 (680)
|++++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888775544
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.22 Score=51.29 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=113.3
Q ss_pred CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC-CCccchhhHH----------HHHHHhcCCHHHHHHHHHHhccCChhHH
Q 005732 250 EFDESIGGALIEFYCGCEAFDGAMRVYDRLE-NPCLNASNSL----------INGLISMGRIEDAELIFNRLTEANSISY 318 (680)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 318 (680)
.|.+..|..|.......-.++-|+..|-+.. -+.+.....+ ...-.--|++++|+++|-++...|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 5777888888887777777777777776655 2222111111 1122234788888888877765442
Q ss_pred HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH--------
Q 005732 319 NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMR-------- 390 (680)
Q Consensus 319 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-------- 390 (680)
.+..+.+.|+|-.+.++++.--...- ...-..+|+.+...+.....|++|.+.|..-.
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~d------------D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ec 831 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDD------------DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIEC 831 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHH
Confidence 34445556666666666554222110 01113345555555555555555554443321
Q ss_pred -------------HCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 391 -------------KLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 391 -------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
...++-+....-.+...+.+.|.-++|.+.+-+. + .| ...+..+...+++.+|.++-+
T Consensus 832 ly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 1123344445555666666666666665544321 1 11 123344555666667766666
Q ss_pred cCCCCCHHHHHH--------------HHHHHHHcCChhHHHHHHHHHHH
Q 005732 458 SISSPNVAAWTA--------------LMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 458 ~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
...-|.+.+.-+ -|..+.+.|++-+|.+++.+|.+
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 555443333211 12334556666666667766654
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.26 E-value=0.00064 Score=49.02 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCC
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM-NMEVGERAAQKMFGLDK 597 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 597 (680)
+...|..+...+...|++++|+..|++. ...| ++..+..++.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777778888888888888888876 3445 5777888888888898 79999999999999887
No 193
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0022 Score=61.37 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++..+..++.+.+++..|+....+++.++|+|..+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456667777778888888888888888888888888888888888888888888888887763
No 194
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.25 E-value=0.0059 Score=50.92 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=71.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
..+...+...|++++|..+|+.+.. .+..-|..|..++-..|++++|+..|......+ +.++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--------------~ddp~ 104 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--------------IDAPQ 104 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------CCCch
Confidence 4556666677777777777777665 345567778888888888888888888888776 57788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.+-.+..++...|+.+.|.+.|+.....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888999999999999988877653
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.053 Score=50.43 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQ--DIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+.+-|.+.|.+..|+.-++.+++. +..........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334455666666666666666652 11112334445555666666666655554443
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.017 Score=51.71 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH-----HH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV-----VD 542 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~ 542 (680)
+.++.++...|.+.-.+.++++.++....-+......|.+.-.+.||.+.|...|++..+..-..+....+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444555555555556666666665443334444555555555566666666666655532222222222222 22
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 543 LLGRSGHLHEAEEFIKDMP-IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.+.-+.++.+|...+.+.. ..| ++...|.-.-+..-.|+...|++.++.+++..|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2334455555555555542 112 33333444444444555555555555555555554
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.23 E-value=0.0067 Score=60.26 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
.++++.|...|..+.++.+++.=...|+-||..+++.|+..+.+.|++..|.++...|...+...+..++
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 3455555555555555555555445555555555555555555555555555555544433333333333
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.035 Score=49.79 Aligned_cols=169 Identities=9% Similarity=-0.001 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCCCC--C--------eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchH
Q 005732 152 LWSLMLVGYVQCNLMSDAFDVFIKMPKK--D--------VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTF 221 (680)
Q Consensus 152 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--------~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 221 (680)
.|+++.+.+.-..-+.+-+..++.-..| . ...-+.++..+...+. +.-.++.+++.++..... ++...
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kE-y~iS~d~~~~vi~~~~e~-~p~L~ 215 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKE-YVLSVDAYHSVIKYYPEQ-EPQLL 215 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHhCCcc-cHHHH
Confidence 3555555555444444444444433222 1 2234566667777777 888899999998866544 77778
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhC-----CCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHH
Q 005732 222 DSVIRACARLGAFCEGKVVHGLLIKCG-----FEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLING 293 (680)
Q Consensus 222 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 293 (680)
..+.+...+.|+.+.|...++...+.. ......+.......|..++++.+|...|.++. +.++..-|.-.-+
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 888888899999999999999776543 33334444445556777889999999998887 4555556777777
Q ss_pred HHhcCCHHHHHHHHHHhcc--CChhHHHHHH
Q 005732 294 LISMGRIEDAELIFNRLTE--ANSISYNSMI 322 (680)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll 322 (680)
+.-.|+..+|++.++.+.+ |...+-++++
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 7788999999999999988 5555444443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.056 Score=45.87 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=57.3
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN---AATFV 503 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~ 503 (680)
|+...-..|..+....|+..+|...|++... .|......+.++....+++..|...++.+.+.+ |+ ..+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence 4444444455555555555555555554442 444455555555555555555555555555422 21 12233
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
.+...+...|.+..|..-|+...+.-..|... -.....+.+.|+..+|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar--~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQAR--IYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH--HHHHHHHHHhcchhHHH
Confidence 34445555555555555555555432222222 22234445555544443
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.15 E-value=0.00066 Score=43.49 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
.++..+..++...|++++|+++|+++++.+|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888887764
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.3 Score=47.33 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 518 (680)
.+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-.++-.. .- .+.-|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHH
Confidence 344455567777777777777667777777777777777777766654321 11 236677777777777777777
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
..+..++. +..-+..|.+.|++.+|.+..-+.
T Consensus 257 ~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77776622 133456777778877777765554
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.11 E-value=0.0086 Score=46.17 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=61.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHhcCCCCChhHHHH
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAATFVGVLSACVRAG--------LVNEGMKIFRSMKSYGVVPTLEHYTC 539 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 539 (680)
..|..+...+++...-.+|+.++..|+ .|+..+|+.++.+..+.. .+-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445556667889999999999999999 889999999988876532 24456778888888888888888888
Q ss_pred HHHHHHh
Q 005732 540 VVDLLGR 546 (680)
Q Consensus 540 l~~~~~~ 546 (680)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877654
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.0067 Score=57.92 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR-SGHLHEAEEFIKDM--PIELDAVVWGALLSAC 576 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 576 (680)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|-.....-.+ .++.+.|.++|+.. .+..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467888888888899999999999998432 3345556555555334 56677799999987 3556788899999999
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...|+.+.|..+|++++..-|... ..|...+..-.+.|+.+...++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999876653 46888888888999999999999888764
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.0039 Score=54.53 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=83.3
Q ss_pred hhHHHHhhccC--CCCChhhHHHHHHHHHc-----CCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----------
Q 005732 34 LVTARNLFDQM--PIRTVVSWNTMLCGYSK-----WAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ---------- 96 (680)
Q Consensus 34 ~~~A~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~---------- 96 (680)
+..-...|++. ..+|-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.||..+=+
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 56788899999999875 46788888899999999999999999999987654
Q ss_pred ------cCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCC
Q 005732 97 ------LNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFE 134 (680)
Q Consensus 97 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (680)
..+.+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 23556799999999999999999999999999977664
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.016 Score=46.58 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCC--chHhHHHHHHHHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFE--SNVYVGTSLVDMYS 444 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 444 (680)
+..++-..|+.++|+.+|++....|+.... ..+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677788888888888888887765542 34555666777778888887777777654211 12222222333455
Q ss_pred hcCChHHHHHHHhcC
Q 005732 445 RCGSINDAQASFSSI 459 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~ 459 (680)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 566666666655433
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0021 Score=46.94 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVI 605 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 605 (680)
..|.+.+++++|.++++.+ ...| ++..+...+.++...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888888888888887 4444 57777778888899999999999999999999987655433
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.019 Score=53.74 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL----DAVVWGALL 573 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 573 (680)
.|...+..+.+.|++++|+..|+.+.+..+... ...+-.+..+|...|++++|...|+.+ ...| .+..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434555777777777777775432211 245556777777788888888877776 2222 245555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.++...|+.++|...|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677789999999999999999999874
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.57 Score=48.43 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
+.+......+.+.+.+.|.-++|.+.|-+.-. | ...+..|....++.+|.++-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777776644311 1 134455666666666655543
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.0064 Score=57.90 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=158.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCC---CChhhHHHHHHHhcccCChHHHHHHHHHHH--h--cCC-CchHhHHHHHHHH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAID---RTRSTFSVLFHACSCLGSLQQGQLLHAHLV--K--TPF-ESNVYVGTSLVDM 442 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~-~~~~~~~~~l~~~ 442 (680)
.-+|+.|+....+.+|+...+.|.. .=+.+|..+.++|.-.+++++|.++...=+ . .|- .........|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3578999999999999999987732 223457777788888899999988764221 1 010 0111222233444
Q ss_pred HHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHH--
Q 005732 443 YSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGL--------------------GSEAVLLFEIML-- 491 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~-- 491 (680)
+--.|.+++|.-.-.+-.. .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543222110 111223334444433221 233444443321
Q ss_pred --HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH----hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 005732 492 --EQDIV-PNAATFVGVLSACVRAGLVNEGMKIFRSMK----SYGVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM--- 560 (680)
Q Consensus 492 --~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 560 (680)
+.|-. .-...|..|...|.-.|+++.|+...+.-. +.|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 012345566666667889999987765432 333221 2446777888999999999999988864
Q ss_pred ----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 561 ----P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGL----D--KKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 561 ----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+ ......+..+|...|.-..++++|+.+..+=+.+ + .....+++.|+.++...|..+.|+.+.+.-++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 2234666778888888889999999988775443 2 22456799999999999999999998887664
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.95 E-value=0.099 Score=51.00 Aligned_cols=37 Identities=27% Similarity=0.152 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+...+.+++.++.-.|++++|.+.+++++++.|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3466677888888889999999999999999997654
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.93 E-value=0.41 Score=45.91 Aligned_cols=251 Identities=13% Similarity=0.093 Sum_probs=140.5
Q ss_pred hcCCHHHHHHHHHHhcc-CChhH--HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHH
Q 005732 296 SMGRIEDAELIFNRLTE-ANSIS--YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISG 372 (680)
Q Consensus 296 ~~g~~~~a~~~~~~~~~-~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~ 372 (680)
-.|+++.|.+-|+.|.. |.... ...|.-...+.|+.+.|.++-+..-..- +.-.-.+...+..
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------------p~l~WA~~AtLe~ 197 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------------PQLPWAARATLEA 197 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------------cCCchHHHHHHHH
Confidence 44666666666666665 33332 2223333446677777777776665543 3345567778888
Q ss_pred HHhCCChHHHHHHHHHHHHCC-CCCChhh--HHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 373 YVQNNLHEKALQLYMTMRKLA-IDRTRST--FSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 373 ~~~~~~~~~A~~~~~~m~~~~-~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
.+..|+++.|+++++.-+... +.++..- -..++.+-+ +. .-..+.
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA--------------~s------------------~ldadp 245 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA--------------MS------------------LLDADP 245 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--------------HH------------------HhcCCh
Confidence 888888888888887765533 2232221 111111100 00 001112
Q ss_pred HHHHHHHhcCC--CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 450 NDAQASFSSIS--SPNVA-AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 450 ~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
..|...-.+.. .||.. .--.-..++.+.|+..++-.+++.+-+....|+. .. +....+.|+ .+..-+++..
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHH
Confidence 22222222222 13322 1222345678888888888888888886555543 21 112334443 4444444444
Q ss_pred -hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCC
Q 005732 527 -SYGVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACW-FWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 527 -~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~ 598 (680)
-...+| +....-.+..+-...|++..|..--+.. ...|....|..+...-. ..||-.++.+.+-++++..-+
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 112333 3445556667777888888877666655 45777888877776654 459999999999999885433
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.015 Score=49.76 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=70.3
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-P-IEL-----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
.-+.+.|++++|..-|... . .++ ....|..-..+..+.+.++.|+.-..+++++.|....++...+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4466778888887777665 2 122 13345555567788999999999999999999998888888899999999
Q ss_pred CchHHHHHHHHHhhC
Q 005732 615 KWGKKMDIRKRLTHL 629 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~ 629 (680)
++++|++-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.0057 Score=58.24 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCCCCCcch----HHHHHHHHhccCChhhHHHHHH
Q 005732 190 GYAKSVDGCEKALKLFRWMRESGENMPNEYT----FDSVIRACARLGAFCEGKVVHG 242 (680)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~ 242 (680)
-+++.|+ ....+.+|+..++.|.. |..| |..|.++|.-.+++++|.+.+.
T Consensus 26 RLck~gd-craGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGD-CRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccc-hhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4566777 67777888877777644 4433 4445555556667777776654
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.88 E-value=0.0013 Score=48.79 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGL----DKKP---ISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+++.+...+...|++++|+..+++++++ ++++ +.++..++.++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777888888889999999988888764 2222 44588899999999999999999988654
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.86 E-value=0.031 Score=45.81 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch---HHHHHHHHHh
Q 005732 541 VDLLGRSGHLHEAEEFIKDM----PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA---YVILSNIYAV 612 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 612 (680)
.....+.|++++|.+.|+.+ +..| .......++.++.+.|++++|...+++.+++.|.++.+ ++..|-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455778888888888877 2222 45566778888999999999999999999999998654 4455555555
Q ss_pred cCC---------------chHHHHHHHHHhhC
Q 005732 613 LGK---------------WGKKMDIRKRLTHL 629 (680)
Q Consensus 613 ~g~---------------~~~A~~~~~~~~~~ 629 (680)
... ...|..-|+++.+.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 544 55666666666554
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.023 Score=51.37 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=88.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 005732 440 VDMYSRCGSINDAQASFSSISS--P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR-- 511 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 511 (680)
...+...|++.+|.+.|+.+.. | -....-.++.++.+.|+++.|...++++++.-..-....+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3344555666666666665542 1 1234445666777777888888887777763211111222222222211
Q ss_pred -----------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005732 512 -----------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWM 580 (680)
Q Consensus 512 -----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 580 (680)
.+...+|...|+. ++..|=.+....+|.+.+..+.... ...-..++.-|.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT
T ss_pred hCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc
Confidence 1112233333333 3333334444445544444432000 111123455678899
Q ss_pred CHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHH
Q 005732 581 NMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 621 (680)
.+..|...++.+++..|+.+ .+...++..|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999974 457788899999999885543
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.78 E-value=0.088 Score=53.49 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHh
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLIS 296 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 296 (680)
+..+...+...+.+...+..|-++|..|-. ...++..+...++|++|..+-++.++--...|....+.++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 556666666677777788888888877633 23577888899999999999888874444445556666777
Q ss_pred cCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCc
Q 005732 297 MGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
..++++|.+.| -+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAf------------------hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAF------------------HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHH------------------HHhcchHHHHHHHHHhhh
Confidence 77777776543 455777777777777654
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=96.73 E-value=0.089 Score=52.14 Aligned_cols=145 Identities=11% Similarity=0.088 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 480 GSEAVLLFEIMLE-QDIVPN-AATFVGVLSACVR---------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 480 ~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
.+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.+.-++..+.+ +.|+.....+..++.-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4678888888882 235666 3444443333221 334556777777777665 346777777777778888
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH-HHhcCCchHHHHHHHH
Q 005732 549 HLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI-YAVLGKWGKKMDIRKR 625 (680)
Q Consensus 549 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 625 (680)
+++.|...|++. ...|| +..|......+...|+.++|.+.++++++++|.-..+-..-.++ .+-....++|++++-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 899999999887 45664 66677777777888999999999999999999875554433333 3334456677777643
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.79 Score=48.66 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=108.8
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCChhhHHH----HHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRTVVSWNT----MLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ 96 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~ 96 (680)
....++.+.+..-++-|..+-..-..+ ...-.. ..+-+.+.|++++|...|-+-... +.|. .+++-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 345566677777777777766543322 222222 234456788999998888776643 3333 34555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhH--HHHHHHHHHhcCChhhHHHHhc
Q 005732 97 LNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELL--WSLMLVGYVQCNLMSDAFDVFI 174 (680)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~ 174 (680)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.++..+..+... .+.+. ....+..+-+.+-.++|.-+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55666666677777888754 33444678899999999999888888775 33322 4556667777777777776666
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHH
Q 005732 175 KMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWM 208 (680)
Q Consensus 175 ~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 208 (680)
+-.. .......++.. .++ +++|++.+..|
T Consensus 488 k~~~-he~vl~ille~---~~n-y~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDILLED---LHN-YEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHHHHHH---hcC-HHHHHHHHhcC
Confidence 5444 33334444432 245 78888887766
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.025 Score=54.40 Aligned_cols=139 Identities=13% Similarity=-0.049 Sum_probs=97.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
.+.|.+.|++..|..-|++.... -. +...-+.++..... ..-..++..+..+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 45678888888888888886651 00 00111111111111 11234566677888889999
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHh
Q 005732 551 HEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK-MDIRKRLT 627 (680)
Q Consensus 551 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 627 (680)
.+|++..++. . .++|...+.--+.+|...|+++.|+..|+++++++|+|-.+...++.+-.+..++.+. .++|..|.
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888876 3 3457777777888999999999999999999999999988888888887776665554 78888887
Q ss_pred hCC
Q 005732 628 HLE 630 (680)
Q Consensus 628 ~~~ 630 (680)
.+-
T Consensus 354 ~k~ 356 (397)
T KOG0543|consen 354 AKL 356 (397)
T ss_pred hcc
Confidence 643
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.67 E-value=0.022 Score=50.00 Aligned_cols=88 Identities=14% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 005732 461 SPNVAAWTALMNGYSH-----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRA----------------GLVNEGM 519 (680)
Q Consensus 461 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------g~~~~A~ 519 (680)
..+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3555566666666653 466677777788888888888899999998877542 2345677
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
+++++|...|+.||..++..+++.+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 88888888888888888888877776554
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.012 Score=53.71 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=52.4
Q ss_pred hcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHHHHHhcCC
Q 005732 546 RSGHLHEAEEFIKDM----P---IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSNIYAVLGK 615 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 615 (680)
+.|++.+|...|... + ..|+. +..|+.++...|+++.|...|..+.+..|++ |+.+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445566666555544 1 22333 3336667777777777777777777766664 4457777777777777
Q ss_pred chHHHHHHHHHhhCC
Q 005732 616 WGKKMDIRKRLTHLE 630 (680)
Q Consensus 616 ~~~A~~~~~~~~~~~ 630 (680)
.++|..+|+++.++-
T Consensus 231 ~d~A~atl~qv~k~Y 245 (262)
T COG1729 231 TDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777777776543
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.037 Score=47.04 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556667778899999999999999999999999999999999999999999999988763
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.60 E-value=0.77 Score=44.51 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHh
Q 005732 260 IEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFE 339 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 339 (680)
+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... ...+..|..++.+|.+.|+..+|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 33334445555555555444444444445555555555555544443322 1233455555555555555555555544
Q ss_pred h
Q 005732 340 K 340 (680)
Q Consensus 340 ~ 340 (680)
+
T Consensus 262 k 262 (319)
T PF04840_consen 262 K 262 (319)
T ss_pred h
Confidence 4
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.15 Score=51.90 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 005732 366 WNSMISGYVQNNLH--EKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 366 ~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
++..=.+|.+..+. -+.+.-++++++.|-.|+... +...|+-.|.+.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33444455554432 344555677777777777653 34455667777777777654
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.59 E-value=0.053 Score=49.05 Aligned_cols=142 Identities=10% Similarity=-0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR 546 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 546 (680)
.....+...|++++|+..|+.+...-.... ......++.++.+.|+++.|...+++..+.-+.....-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344456677778888888777776422111 334455666777777777777777777644332222222222222211
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc-----------------hHHHHHHH
Q 005732 547 SGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS-----------------AYVILSNI 609 (680)
Q Consensus 547 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 609 (680)
........ ......+...+|...++..++..|+++- .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 0112334556677777777777777632 23367888
Q ss_pred HHhcCCchHHHHHHHHHhhC
Q 005732 610 YAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~ 629 (680)
|.+.|++..|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999998874
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=1.3 Score=46.43 Aligned_cols=339 Identities=14% Similarity=0.146 Sum_probs=181.5
Q ss_pred hCCCCCchHHHH-----HHHHhhcCCCHHHHHHHHhhcCCCc---cchhhHHHHHHHhcCC---HHHHHHHHHHhcc--C
Q 005732 247 CGFEFDESIGGA-----LIEFYCGCEAFDGAMRVYDRLENPC---LNASNSLINGLISMGR---IEDAELIFNRLTE--A 313 (680)
Q Consensus 247 ~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~--~ 313 (680)
-|++.+..-|.. +++-+...+.+..|.++-.-+.-|. ...|.....-+++..+ .+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 356666555543 4555667788888888877776222 2334555555555532 2223333333333 3
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005732 314 NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLA 393 (680)
Q Consensus 314 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 393 (680)
+..+|..+.+.....|+.+.|..+++.=...+..+.-. .+..-+...+.-....|+.+-...++-.+.+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lL---------L~m~~~~~AL~kaies~d~~Li~~Vllhlk~~- 575 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLL---------LKMKDSSLALKKAIESGDTDLIIQVLLHLKNK- 575 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHH---------hccchHHHHHHHHHhcCCchhHHHHHHHHHHH-
Confidence 45578888887888899998888887654433211000 01122333444455666666666665555432
Q ss_pred CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH--hcC-----CCCCHHH
Q 005732 394 IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF--SSI-----SSPNVAA 466 (680)
Q Consensus 394 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~-----~~~~~~~ 466 (680)
.+...|...+ .+...|..+|.+..+..-.. .+-..|-. ++...+...| +.. ..+-...
T Consensus 576 --~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 576 --LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred --HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh
Confidence 1111111111 12233444444443321000 01111211 2211111111 110 0111112
Q ss_pred HHHHHHHHHHcCChh---HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh
Q 005732 467 WTALMNGYSHHGLGS---EA-------VLLFEIMLE-QDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE 535 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (680)
......++.+..... +| +++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ .||..
T Consensus 641 lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr 716 (829)
T KOG2280|consen 641 LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKR 716 (829)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchh
Confidence 222333444433311 11 122222221 1222333445555556777888888888777655 56777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
.|-.=+.++...+++++-+++-+..+ ++.-|.-...+|.+.|+.++|..++-+.-. +...+.+|.+.|+
T Consensus 717 ~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 717 LWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGD 785 (829)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhcc
Confidence 88878889999999999888888774 245566788889999999999988866522 2267888999999
Q ss_pred chHHHHHHHH
Q 005732 616 WGKKMDIRKR 625 (680)
Q Consensus 616 ~~~A~~~~~~ 625 (680)
+.+|.++.-+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 9999887544
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.53 E-value=0.92 Score=44.51 Aligned_cols=136 Identities=9% Similarity=-0.018 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
.-...|...+....+....+.|..+|-+..+.| +.++...++.++..+ ..|++..|..+|+.-... ++.+....+..
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~d~~~y~~ky 472 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FPDSTLYKEKY 472 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CCCchHHHHHH
Confidence 445678888888888888999999999999988 567778888888755 468889999999876643 23333444566
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 541 VDLLGRSGHLHEAEEFIKDM--PIELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+..+.+-++-+.|..+|+.. .+..+ ..+|...+.--..-|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77788899999999999965 22223 6678888887788999999999999999988885
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.52 E-value=0.62 Score=42.44 Aligned_cols=174 Identities=16% Similarity=0.046 Sum_probs=94.7
Q ss_pred HHhcCChHHHHHHHhcCCC--C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----
Q 005732 443 YSRCGSINDAQASFSSISS--P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR----- 511 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----- 511 (680)
-.+.|++++|.+.|+.+.+ | ...+--.++-++.+.+++++|+..+++.......-....|...|.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3455667777777766653 1 2234445566777788888888888887764322222334444443331
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 512 --AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 512 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
..|...+.+-+..+.+ ++.-|=.+.-..+|..-+..+... -...=..+..-|.+.|.+..|..-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 2233333333332221 000000011111111111111000 0001123445678899999999999
Q ss_pred HHHHcCCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 590 QKMFGLDKKPIS---AYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 590 ~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.+++..|+.+. ++..+..+|.+.|..++|.+.-+-+...
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999888644 4677788999999999999887666543
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.16 Score=47.13 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS---GHLHEAEEFIKDM-PIEL-DAVVWGAL 572 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p-~~~~~~~l 572 (680)
|...|..|...|...|+.+.|..-|....+.. .+++..+..+..++..+ ..-.++.++|+++ ...| |......|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 56777777777777777777777777777542 33555666666655433 2345677888877 4455 56666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...+...|++.+|...++.+++..|.+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 778888999999999999999988776
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.29 E-value=0.93 Score=42.00 Aligned_cols=197 Identities=18% Similarity=0.102 Sum_probs=115.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSIS-----SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
...+......+...++...+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444455555566666666665555442 23344455555556666667777777777666433321 11222222
Q ss_pred -HHhccCCHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 005732 508 -ACVRAGLVNEGMKIFRSMKSYGV--VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD--AVVWGALLSACWFWMN 581 (680)
Q Consensus 508 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 581 (680)
.+...|+++.|...+.+...... ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56677777777777777654211 112233333334455667777777777766 22332 5666666667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 582 MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++.|...+..+....|.....+..++..+...|.++++...+.+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888777755556666666666666777777777766543
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.29 E-value=0.075 Score=52.64 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHH-hcCCCCC-hhHHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005732 514 LVNEGMKIFRSMK-SYGVVPT-LEHYTCVVDLLGR---------SGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM 580 (680)
Q Consensus 514 ~~~~A~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 580 (680)
..+.|..+|.+.. .....|+ ...|..+..++.. .....+|.++.++. ...| |+.....++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3567788888888 3334554 4444444443322 22334566666555 4444 7888888888888888
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
+++.|...|+++..++|+.+.++...++++.-.|+.++|.+.+++..+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999997665443
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.25 E-value=1.7 Score=44.60 Aligned_cols=408 Identities=11% Similarity=0.043 Sum_probs=217.3
Q ss_pred CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcch-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHH
Q 005732 180 DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYT-FDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA 258 (680)
Q Consensus 180 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (680)
+-..|..+|.---.... .+.+...+..+...- | .... |......-.+.|..+.+.++|+.-+.. ++.+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~-~~~~r~~y~~fL~ky--P-l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIED-VDALREVYDIFLSKY--P-LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhH-HHHHHHHHHHHHhhC--c-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHH
Confidence 33445555554433333 455556666665432 2 3332 233444445677888888888887653 5666677776
Q ss_pred HHHHhhc-CCCHHHHHHHHhhcC------CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHh---c-
Q 005732 259 LIEFYCG-CEAFDGAMRVYDRLE------NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYA---V- 327 (680)
Q Consensus 259 li~~~~~-~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~---~- 327 (680)
+...++. .|+.+.....|+... --+...|...|..-..++++.....+++++.+-....|+..-.-|. +
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 6665544 577777777777766 2233345677777777888888888888888833333333322221 1
Q ss_pred -----cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 328 -----YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ-NNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 328 -----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
....+++.++-.....+...+ ...........-+.--.. .+..+++...+.+...
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~---------~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------- 259 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKIT---------HSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------- 259 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcc---------cccChhHHHHHHHhhccCccchhhHHHHHHHHHHH----------
Confidence 112233322222221100000 000001111111100000 0111111111111100
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhc---C----CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CHHHHHHHH
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKT---P----FESNVYVGTSLVDMYSRCGSINDAQASFSSISSP---NVAAWTALM 471 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 471 (680)
.--..+-...........++.-++. . .+++...|...+..-...|+.+.+.-.|+...-| -...|-..+
T Consensus 260 -~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~ 338 (577)
T KOG1258|consen 260 -IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA 338 (577)
T ss_pred -HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 0001111111222223333333322 1 1345667788888888899999999888887643 234555555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 550 (680)
.-....|+.+-|..++....+-..+-...+-..-...+-..|++..|..+++.+...- |+ ...-..-+....+.|+.
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcch
Confidence 5445558888888887776664333222222222223355789999999999998543 33 22333345566788888
Q ss_pred HHHH---HHHHhC-CCCCCHHHHH----HHHHH-HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 551 HEAE---EFIKDM-PIELDAVVWG----ALLSA-CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 551 ~~A~---~~~~~~-~~~p~~~~~~----~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+.+. +++... ..+-+..+.. ...+. +...++.+.|..++.++.+..|++...|..++......+
T Consensus 417 ~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 417 EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 8888 555444 2222322222 22222 334789999999999999999999888888888776655
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.24 E-value=0.0067 Score=44.92 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-------P-IELD-AVVWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
+++.+...|...|++++|++.+++. + ..|+ ..++..++.++...|++++|+.++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555555555555443 1 1122 456677777777888888888888877653
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.22 E-value=0.049 Score=43.13 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC----chHHHHHHHHHhcCC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI----SAYVILSNIYAVLGK 615 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 615 (680)
-++...|+++.|++.|.+. .+- ..+..|+.-..++.-.|+.++|+.-+++++++..+.. .+|...+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3466778888888888776 333 3677788888888888888888888888888754432 236677778888888
Q ss_pred chHHHHHHHHHhhCCC
Q 005732 616 WGKKMDIRKRLTHLEV 631 (680)
Q Consensus 616 ~~~A~~~~~~~~~~~~ 631 (680)
-+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888776663
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.075 Score=49.04 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGA---LLSACWFWMNMEV 584 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~ 584 (680)
.....|+..+|..+|+........ +...--.++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 456678888888888887754333 244555677888888888888888888863333222222 1222222222222
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEEC-CeEEEEecCCCCCCChhHHH
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELN-SRVHAFSVEDRNNPNCNVIY 663 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 663 (680)
.. -+++-...+|++...-..++..+...|+.++|.+.+=.+.+++.--..| +.. ..+..|.-=+..||...+.+
T Consensus 222 ~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~----~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG----EARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc----HHHHHHHHHHHhcCCCCHHHHHHH
Confidence 22 2445567788888888899999999999999988887776543211111 110 11122222244577777777
Q ss_pred HHHHHH
Q 005732 664 ATLEHL 669 (680)
Q Consensus 664 ~~~~~~ 669 (680)
.||..+
T Consensus 297 RkL~sl 302 (304)
T COG3118 297 RKLYSL 302 (304)
T ss_pred HHHHHh
Confidence 777654
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=2.3 Score=44.73 Aligned_cols=120 Identities=13% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHHcCCChHHHHHHHhhhcCCc---hhHHHHHHHHHHhcCCh---hhHHHHhccCCC--CCeeeHHHHHHHHHhCCC
Q 005732 125 LLFFYANCFEIEEAKRVFDELHEDN---ELLWSLMLVGYVQCNLM---SDAFDVFIKMPK--KDVVVWTKLISGYAKSVD 196 (680)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~ 196 (680)
+++-++..+.+..|.++-+.+..+. ...|......+.+..+. +.+..+-+++.. -+..+|..+.+.....|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 4555666667777777766665543 45555555555554221 222233333333 344566666665556666
Q ss_pred ChHHHHHHHHHHHHcCCCCC---CcchHHHHHHHHhccCChhhHHHHHHHHH
Q 005732 197 GCEKALKLFRWMRESGENMP---NEYTFDSVIRACARLGAFCEGKVVHGLLI 245 (680)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 245 (680)
++-|..+++.=...+...| +..-+...+.-+...|+.+....++-.+.
T Consensus 523 -~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 523 -FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred -HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5666655543221111100 22234455555556666655555544443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.85 Score=42.41 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=109.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
......|++.+|..+|+........ +......+..+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788899999999888875322 345666778889999999999999988763222222223334456677777777
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 552 EAEEFIKDMPIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLD--KKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 552 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -++...-..+..++.-.|.-+.+.-.+++
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7777777765456 77788888889999999999999888887754 34567788889999888866555444433
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.98 E-value=0.22 Score=39.69 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=84.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
.-.|..++..++..+.... .+..-++-++--...+-+-+-..+.++.+ |-..|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHH
Confidence 4467778888888887763 24455555554444444444444444333 222222 2345555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 555 EFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 555 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
..+-.++ .+.......+..+...|.-++-..++..+.+.+..+|+....++.+|.+.|+..+|.+++++.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555553 345566777788889999999999999998766667789999999999999999999999999888864
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.14 Score=43.38 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----hcCCCCChhHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-----SYGVVPTLEHY 537 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 537 (680)
....++..+...|++++|+.+.+.+.... +-|...+..++.++...|+...|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456667778888888888888888743 2257788888888888888888888888775 45777776554
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.73 Score=41.32 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=40.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCCCCchHHHHH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMP-------IELD-AVVWGALLSACWFWMNMEVGERAAQKMFGL----DKKPISAYVILS 607 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 607 (680)
....|.+..++++|-..+.+-+ ..|+ -..+...+..+....|+..|+..++...+. .|++..+...|.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3345555555655555444431 1122 122333344444555666666666665443 233444444555
Q ss_pred HHHHhcCCchHHHHHH
Q 005732 608 NIYAVLGKWGKKMDIR 623 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~ 623 (680)
..| ..|+.+++.+++
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 444 345555555544
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.68 E-value=1.2 Score=43.68 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh---CCChHHHHHHHHHHHH
Q 005732 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ---NNLHEKALQLYMTMRK 391 (680)
Q Consensus 315 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~ 391 (680)
..+...++-+|....+++...++.+.+....... .......-....-++.+ .|+.++|++++..+..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~----------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD----------VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc----------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 3345566667888899999999999887742100 01223333345556677 8999999999999777
Q ss_pred CCCCCChhhHHHHHHHh
Q 005732 392 LAIDRTRSTFSVLFHAC 408 (680)
Q Consensus 392 ~~~~p~~~~~~~ll~~~ 408 (680)
..-.+++.+|..+...|
T Consensus 211 ~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIY 227 (374)
T ss_pred ccCCCChHHHHHHHHHH
Confidence 77778888888877665
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.35 Score=44.38 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP--TLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIEL-DAVVWGALL 573 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 573 (680)
.|+..+. +.+.|++..|...|....+..+.. ....+-.|..++...|++++|...|..+ +..| .+..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544444 345566777777776666432211 1233445677777788888887777665 2233 467778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
.+..+.|+.++|...|+++.+..|+.+.+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888899999999999999999999975543
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.66 E-value=3.2 Score=43.10 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHhcc--CChhHHHHH-HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHH
Q 005732 297 MGRIEDAELIFNRLTE--ANSISYNSM-IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY 373 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~~--~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~ 373 (680)
....+.|.++++.+.. |+...|... .+.+...|++++|.+.|++....... + .+.....+--+.-.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----~------~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE----W------KQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----H------HhHHHHHHHHHHHHH
Confidence 3456777777877777 776666544 45666778888888888865542100 0 122334455566677
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc-ccCCh-------HHHHHHHHHHH
Q 005732 374 VQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACS-CLGSL-------QQGQLLHAHLV 425 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~-------~~a~~~~~~~~ 425 (680)
.-..+|++|.+.|..+.+.. ..+..+|.-+..+|. ..++. ++|..++.++.
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77888888888888887743 334444544444332 45555 66666766554
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.55 E-value=0.032 Score=33.09 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+..++..+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566667777777777777777777777764
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.50 E-value=0.1 Score=47.39 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=85.9
Q ss_pred HHHhhccCC--CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc------------
Q 005732 37 ARNLFDQMP--IRTVVSWNTMLCGYSKW-----AKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQL------------ 97 (680)
Q Consensus 37 A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~------------ 97 (680)
.+..|+..+ ++|-.+|-+++..|... +..+-....++.|.+.||.-|..+|+.||+.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 66888999999888653 56777778899999999999999999999986552
Q ss_pred ----CChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCCh-HHHHHHHhhhc
Q 005732 98 ----NSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEI-EEAKRVFDELH 146 (680)
Q Consensus 98 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 146 (680)
....-+..++++|...|+.||..+-..|++++.+.+-. .+..+++-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23455888999999999999999999999999888753 34455555554
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.47 E-value=2.1 Score=39.55 Aligned_cols=221 Identities=19% Similarity=0.107 Sum_probs=157.4
Q ss_pred CCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCchHhHHHHHHHHHHhcCChHHHH
Q 005732 376 NNLHEKALQLYMTMRKLAID-RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT-PFESNVYVGTSLVDMYSRCGSINDAQ 453 (680)
Q Consensus 376 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (680)
.+....+...+......... .....+......+...+....+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666553322 13466677777778888888888888777653 33556666777777788888888999
Q ss_pred HHHhcCCC--CCH-HHHHHHHH-HHHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 454 ASFSSISS--PNV-AAWTALMN-GYSHHGLGSEAVLLFEIMLEQDIVP----NAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 454 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 88887764 222 22333333 78899999999999999866 333 3344444455567789999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 526 KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
...........+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 86432224667778888899999999999999887 44454 555556666666777899999999999999987
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.36 E-value=0.029 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777788888888888888887775
No 249
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.34 E-value=0.77 Score=45.76 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=30.7
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNV----AAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
.+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554432 221 2345555555555555555555555554
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.33 E-value=0.36 Score=38.59 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
....++.+...|+-+.-.+++..+.+ .-.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444555555555555554443 123444444455555555555555555555555544
No 251
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.25 E-value=5.5 Score=43.07 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHH
Q 005732 198 CEKALKLFRWMRESGENMPNE--YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRV 275 (680)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (680)
.+.|..++..........+.. .....+.......+....+...++..... ..+......-+......++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 688999998875544221111 12233333333332245555555543322 22445555556666689999999999
Q ss_pred HhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhH
Q 005732 276 YDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTM 352 (680)
Q Consensus 276 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 352 (680)
+..|. .....+..-+.+++...|+.++|...|+.+..+ .+|..++.+ .+.|..-. +.. ..... ....
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa-~~Lg~~~~----~~~-~~~~~-~~~~- 404 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAA-QRLGEEYP----LKI-DKAPK-PDSA- 404 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHH-HHcCCCCC----CCC-CCCCc-hhhh-
Confidence 99987 445566777888888899999999999998653 233333221 11221100 000 00000 0000
Q ss_pred hhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHh-----c
Q 005732 353 ISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVK-----T 427 (680)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~ 427 (680)
...+. -..-+..+...|+...|...+..+... .+......+.......|..+.+......... .
T Consensus 405 ------~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~ 473 (644)
T PRK11619 405 ------LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE 473 (644)
T ss_pred ------hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH
Confidence 01111 122345567789999999888887763 3444445555555566776666555433221 1
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHH
Q 005732 428 PFESNVYVGTSLVDMYSRCGSINDA 452 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A 452 (680)
.++ ..|...+..+.+...++.+
T Consensus 474 rfp---~~~~~~~~~~a~~~~v~~~ 495 (644)
T PRK11619 474 RFP---LAWNDEFRRYTSGKGIPQS 495 (644)
T ss_pred hCC---cchHHHHHHHHHHcCCCHH
Confidence 211 1355555555555444443
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.21 E-value=3 Score=39.86 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccCCh---hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 317 SYNSMIKGYAVYGQV---DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
++..++.+|...+.. ++|.++++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--------------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--------------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--------------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455556666655543 34444555554332 223444444555555567777777777777664
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.65 Score=43.61 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=54.5
Q ss_pred cCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhccCCHHHH
Q 005732 446 CGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV----LSACVRAGLVNEG 518 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~~A 518 (680)
.|+..+|-..++++.+ .|..++.---.+|...|+.+.-...+++.... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444442 34445555555555666665555555555432 12333222211 1223345556666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
.+.-++..+.+ +.|..........+.-.|++.++.++..+-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 65555555433 223344444555555566666666655544
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.07 E-value=1.6 Score=36.52 Aligned_cols=125 Identities=12% Similarity=0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
..++..+...+.......+++.+...+. .+....+.++..|++.+ .....+.++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3556666677778888888888887763 56667777888777653 3444444442 12334445567778888
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 548 GHLHEAEEFIKDMPIELDAVVWGALLSACWFW-MNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 548 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
+-++++.-++.+++... ..+..+... ++.+.|.+++.+ +.++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 88888888888876321 122223333 778888887776 234456666665544
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=0.8 Score=46.68 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
..+.++..+-+.|..+.|+++..+- ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 3455555555555555555554432 333333444444444444332222 333455555555555555555
Q ss_pred HHHHhhc
Q 005732 335 KRLFEKM 341 (680)
Q Consensus 335 ~~~~~~~ 341 (680)
++.|.+.
T Consensus 367 e~c~~k~ 373 (443)
T PF04053_consen 367 EECYQKA 373 (443)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 5555544
No 256
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.06 E-value=0.37 Score=39.22 Aligned_cols=47 Identities=11% Similarity=0.263 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 495 IVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
..|+..+..+++.+|+..|++..|.++++... ..+++.+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33444445555555555555555555554444 333444444444443
No 257
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=9.3 Score=46.31 Aligned_cols=311 Identities=10% Similarity=0.006 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhc----c--CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC
Q 005732 289 SLINGLISMGRIEDAELIFNRLT----E--ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN 362 (680)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~----~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 362 (680)
.+..+-.+.+.+..|...+++-. + ....-|..+...|+..+++|....+...-.. .|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----------------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----------------DPS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----------------Ccc
Confidence 44556678888999999998832 2 2223444455589999999888877764111 122
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHH-HHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGT-SLVD 441 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 441 (680)
...-|.-....|++..|...|+.+.+.+ ++...+++.++......|.+.......+-..... .+....++ .=+.
T Consensus 1452 ---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~e 1526 (2382)
T KOG0890|consen 1452 ---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVE 1526 (2382)
T ss_pred ---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHH
Confidence 2234455677899999999999998754 3346778888888778888887777655554433 33333333 3345
Q ss_pred HHHhcCChHHHHHHHhcCCCCCHHHHHHH--HHHHHHcCChh--HHHHHHHHHHHCCCCCC---------HHHHHHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISSPNVAAWTAL--MNGYSHHGLGS--EAVLLFEIMLEQDIVPN---------AATFVGVLSA 508 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~~~~p~---------~~~~~~ll~~ 508 (680)
+-.+.++++....... ..+...|... +....+..+-+ .-....+.+++.-+.|- ...|..++..
T Consensus 1527 aaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kL 1603 (2382)
T KOG0890|consen 1527 AAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKL 1603 (2382)
T ss_pred HHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHH
Confidence 5577888888777765 3344444443 22222222211 11223333333211110 1223333322
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHHH---HhC----CCC-----CCHHHHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYT---CVVDLLGRSGHLHEAEEFI---KDM----PIE-----LDAVVWGALL 573 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~---~~~----~~~-----p~~~~~~~l~ 573 (680)
..-. +.+.-.+.+ .+..++..+.+ .+..-+.+.+....+.+-+ .+. ... .-..+|....
T Consensus 1604 H~l~-el~~~~~~l-----~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1604 HLLL-ELENSIEEL-----KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHH-HHHHHHHHh-----hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 2111 011111111 11122211110 0111222222222222221 111 112 2366888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..++..|.++.|...+-++.+.. .+..+...+..+...|+...|+.++++-.+...
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999999999999998888877 457899999999999999999999999886543
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=95.05 E-value=0.69 Score=39.09 Aligned_cols=85 Identities=11% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+...|++++|..+|+-+...+.. +..-+..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34455555555555555442211 222233333344445555555555554442221 1222222334445555555555
Q ss_pred HHHHHhC
Q 005732 554 EEFIKDM 560 (680)
Q Consensus 554 ~~~~~~~ 560 (680)
.+.|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555444
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.01 E-value=2.4 Score=38.74 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=45.4
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
+..-.+.|++++|.+.|+.+..+.... +-...+--.++.++.+.++++.|+..+++....-..-....|
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s-----------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFS-----------PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-----------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 334456677777777777777655321 333455556667777888888888888887764322222334
Q ss_pred HHHHHHh
Q 005732 402 SVLFHAC 408 (680)
Q Consensus 402 ~~ll~~~ 408 (680)
..-|.++
T Consensus 110 ~~YlkgL 116 (254)
T COG4105 110 AYYLKGL 116 (254)
T ss_pred HHHHHHH
Confidence 4444433
No 260
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.93 E-value=6.8 Score=42.40 Aligned_cols=77 Identities=8% Similarity=-0.062 Sum_probs=35.6
Q ss_pred hHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 550 LHEAEEFIKDMP-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 550 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
.++|...++... ...+......-+......++++.+...+..+-......+...+-+++++...|+.++|...|+++
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455444431 11233333333333335555555555555543322223344555555555556666666655554
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.92 E-value=0.54 Score=46.95 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=84.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
|.-.-+..+++.-+++-+++.+ +.||-.+...++ +-..+....+|.+++++..+.|-. .+..- ......|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~- 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH- 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc-
Confidence 3333455566666666677766 566643332222 223455678888888887754311 00000 00000111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 551 HEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK--PISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 551 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+.+..-...|-..+-..+..++.+.|+.++|++.++.+++..|. +......|+..+...+++.++..++.+-.+
T Consensus 246 --~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 --FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred --hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111111112222333345666677788888888888888877665 344677888888888888888888877654
Q ss_pred CCCccC
Q 005732 629 LEVKKD 634 (680)
Q Consensus 629 ~~~~~~ 634 (680)
....+.
T Consensus 324 i~lpkS 329 (539)
T PF04184_consen 324 ISLPKS 329 (539)
T ss_pred ccCCch
Confidence 433333
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.85 E-value=1.8 Score=44.89 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=101.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCh-----hhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhH
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLA-IDRTR-----STFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYV 435 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 435 (680)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.+.+++..+.+.- |.+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 4456666667889999999988876533 22111 134444444333 456778888888887763 333333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISS-------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
.-.-.+.+...|++++|++.|+.... -....+--++..+.-..++++|.+.|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 33445677788999999999986542 223344456667778888999999999988753 2234455544443
Q ss_pred H-hccCCH-------HHHHHHHHHHH
Q 005732 509 C-VRAGLV-------NEGMKIFRSMK 526 (680)
Q Consensus 509 ~-~~~g~~-------~~A~~~~~~~~ 526 (680)
| ...|+. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 456666 77777777765
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.80 E-value=2 Score=35.54 Aligned_cols=114 Identities=9% Similarity=-0.048 Sum_probs=63.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVP--NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
....+.|++++|++.|+.+..+-... ....-..++.++.+.+++++|...+++..+.++.....-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33456677777777777776642111 1344555666777777777777777777765554444445444444443222
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 550 LHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 550 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.+..+.-+- +.. ...+....|..-|+++++..|++.
T Consensus 98 ~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 221111111 111 122345678888888888888874
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.57 E-value=0.12 Score=41.10 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++...|+.+.|++.|.+++.+-|..+++|++.+.++.-+|+.++|++-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 446778999999999999999999999999999999999999999999999998873
No 265
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.52 E-value=0.42 Score=38.92 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKL---------------AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
|..++..+|.++++.|+.+....+++..=.- ...|+..++.+++.+|+..+++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3567888999999999999988888765211 1233444444444444444444444444444433
Q ss_pred c-CCCchHhHHHHHH
Q 005732 427 T-PFESNVYVGTSLV 440 (680)
Q Consensus 427 ~-~~~~~~~~~~~l~ 440 (680)
. +++.+..++..|+
T Consensus 81 ~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLL 95 (126)
T ss_pred HcCCCCCHHHHHHHH
Confidence 2 3333344444433
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.34 E-value=2.4 Score=35.52 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=44.7
Q ss_pred HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 005732 319 NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR 398 (680)
Q Consensus 319 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 398 (680)
..++..+.+.+........++.+...+ +.+...++.++..|++.+ ..+.++.++. ..+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--------------~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~ 69 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--------------SENPALQTKLIELYAKYD-PQKEIERLDN------KSNH 69 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--------------ccchhHHHHHHHHHHHHC-HHHHHHHHHh------cccc
Confidence 345555555566666666666666654 345556677777776553 3344444432 1233
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
.....++..|.+.+.++++..++..
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHh
Confidence 3344455555555555555444443
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.21 E-value=0.42 Score=45.35 Aligned_cols=224 Identities=15% Similarity=0.062 Sum_probs=124.4
Q ss_pred HHhCCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc--CCCch---HhHHHHHHHHHHh
Q 005732 373 YVQNNLHEKALQLYMTMRKLA--IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESN---VYVGTSLVDMYSR 445 (680)
Q Consensus 373 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 445 (680)
+..+.+.++|+..+.+-...- ..-...+|..+..+.++.|.++++...--.-++. ..... ...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888988887765421 1222346777777778888777765543322221 11111 2233334444444
Q ss_pred cCChHHHHHHHhcCCC-----C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhcc
Q 005732 446 CGSINDAQASFSSISS-----P---NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VP--NAATFVGVLSACVRA 512 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~ 512 (680)
..++.+++.+=+.-.. + ......++..++...+.++++++.|+...+--- .| .-..+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444443332211 1 112334466677777778888888877664210 11 124567777777788
Q ss_pred CCHHHHHHHHHHHH----hcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 005732 513 GLVNEGMKIFRSMK----SYGVVPTLEHYT-----CVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWGALLSA 575 (680)
Q Consensus 513 g~~~~A~~~~~~~~----~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~ 575 (680)
.|+++|.-+..+.. ..++..-...|. .+..++...|++.+|.+..++. +.++ -......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 88888876665554 223222122222 3444566677777777666654 2222 24445566677
Q ss_pred HHhcCCHHHHHHHHHHHHcCC
Q 005732 576 CWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~ 596 (680)
|...|+.+.|..-|+++....
T Consensus 256 yR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhcccHhHHHHHHHHHHHHH
Confidence 777888888877777765443
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.14 E-value=2.7 Score=35.96 Aligned_cols=121 Identities=10% Similarity=0.040 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCc
Q 005732 70 SLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149 (680)
Q Consensus 70 ~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 149 (680)
+.+..+.+.+++|+...+..++..+.+.|...... .++..++-+|.......+-.+. +....+.++=-.|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 33444455666666666777777766666554332 3333443333333222221111 12223333333332222
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCC
Q 005732 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVD 196 (680)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 196 (680)
...+..++..+...|++-+|+++.++....+......++.+..+.++
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSND 135 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCC
Confidence 22344455555555555555555555444333334444444444433
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.14 E-value=1.9 Score=41.12 Aligned_cols=196 Identities=10% Similarity=0.063 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHH-HHHHC-CCCCC---hhhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCc---hHhH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYM-TMRKL-AIDRT---RSTFSVLFHACSCLGSLQQGQLLHAHLVKT-PFES---NVYV 435 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~-~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~ 435 (680)
++..+..+.++.|.+++++..-- .|.-. ...-+ -..|..+.+++.+..++.+++.+-..-... |..+ ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 34445556666666666554321 11100 01111 123444445555555555555555544432 2222 1233
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCCHHHH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLE----QDIVPNAATF 502 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~ 502 (680)
...+..++.-.+.++.+.+.|+...+ .....+-.|...|.+.+++++|.-+..+..+ -++.--...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44566777777888888888877653 1235788888999999999999888776654 2332112222
Q ss_pred -----HHHHHHHhccCCHHHHHHHHHHHH----hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 503 -----VGVLSACVRAGLVNEGMKIFRSMK----SYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 503 -----~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
..+.-++...|....|.+..++.. ..|-.+. ......+.+.|...|+.+.|..-++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 234456777888888888888765 3332221 334557788899999999998888765
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.10 E-value=2.9 Score=42.77 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=104.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
....-.++++++.+..+.-.-.. .........++.-+.+.|-.+.|.++.. |+. .-.+...++|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 44556788888777764211100 1124457778888888899998888843 332 2345567899999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 005732 451 DAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGV 530 (680)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 530 (680)
.|.++.++.. +...|..|.....+.|+++-|++.|++... +..|+-.|...|+.+.-.++.+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999887765 667999999999999999999998887532 44555567778888887777777765542
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPI 562 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (680)
++....++.-.|+.++..+++.+.+.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 44555666677888888888887753
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.02 E-value=6.5 Score=39.23 Aligned_cols=150 Identities=11% Similarity=-0.018 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP---NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEH 536 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 536 (680)
....+|..++..+.+.|+++.|...+.++...+..+ .......-+..+-..|+..+|+..++.........+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344567777888888888888888888877643211 222333334455567788888888877765222211 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEF-IKDMPIELDAVVWGALLSACWFW------MNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
...+...+.. ..+..... ........-...+..+..-+... ++.+++...|+.+.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000122333333333344 788999999999999999988888888887
Q ss_pred HHhc
Q 005732 610 YAVL 613 (680)
Q Consensus 610 ~~~~ 613 (680)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6554
No 272
>PRK10941 hypothetical protein; Provisional
Probab=93.99 E-value=0.5 Score=44.34 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEE
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVH 647 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (680)
..+.+-.++.+.++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P---------------- 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP---------------- 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC----------------
Confidence 3566667888999999999999999999999998899999999999999999999999877642
Q ss_pred EEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 648 AFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
.+|....|.+.++.+.++.+
T Consensus 247 -------~dp~a~~ik~ql~~l~~~~~ 266 (269)
T PRK10941 247 -------EDPISEMIRAQIHSIEQKQI 266 (269)
T ss_pred -------CchhHHHHHHHHHHHhhcCc
Confidence 57888888888888877653
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=4.8 Score=36.36 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..|..-..+|-...++++|...+.+..+. ...+...|. . ...++.|..+.+++.+. +--...|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555666777888888888877776531 111111111 1 12234444444444332 12233455556677
Q ss_pred HhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHhccCCHHHH
Q 005732 444 SRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ---DIV--PNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~g~~~~A 518 (680)
..+|.++.|-..+++.- -.....++++|+++|++...- +-+ --...+..+-..+.+...+++|
T Consensus 102 ~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 77777776665544321 123455677788877776541 101 0122344445566677777776
Q ss_pred HHHHHHHH----hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---C--C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 519 MKIFRSMK----SYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM---P--I-ELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 519 ~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~--~-~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
-..+.+-. ...--++ -..|-..|-.+.-..++..|.+.++.- + . ..+..+...|+.+| ..||.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 65554432 1111122 123445556667778999999999883 2 2 23577888888776 7788888777
Q ss_pred HHH
Q 005732 588 AAQ 590 (680)
Q Consensus 588 ~~~ 590 (680)
++.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 653
No 274
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.80 E-value=0.12 Score=48.35 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=73.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-IE-LDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~ 582 (680)
-..-|.+.|.+++|+.+|....... +.++.++..-..+|.+..++..|+.=.+..- .. .-...|.--+.+-...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3456788999999999998877532 2267777777788888888887776655541 11 0122333334444456888
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
.+|..-++.++++.|++. .|-..+.+.....|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHH
Confidence 888899999999999863 344444444444444433
No 275
>PRK09687 putative lyase; Provisional
Probab=93.78 E-value=6.5 Score=37.54 Aligned_cols=81 Identities=6% Similarity=0.003 Sum_probs=38.2
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCCh----hHHHHHHHHHHhCCCCCCHhhHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKF----DESLSLVSTMHRSNVKLNETTFSTI 90 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~t~~~l 90 (680)
.+|..+....+.++...|..+-...+..-+..+|...-...+.++...|.. .++...+..+... .++...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 455555556666666666533222222222344555555555555555543 3455555555322 2344444444
Q ss_pred HHHHhcc
Q 005732 91 LSVCAQL 97 (680)
Q Consensus 91 l~~~~~~ 97 (680)
+.+++..
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444443
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.52 E-value=0.13 Score=32.68 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 600 ISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
|..+..++.+|.+.|++++|.++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999988644
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.46 E-value=0.13 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999888854
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.44 E-value=16 Score=41.10 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=70.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 518 (680)
.++.-.+.|-+.+|..++..-.+.--..|.+....+.....+++|.-.|+..=+ ..-.+.+|..+|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444455555555554322222223333344444555666666665554322 11235566677777777
Q ss_pred HHHHHHHHhcCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLE--HYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
..+..++... -+.. +-..|+..+...++.-+|-++..+....|... +..+++...|++|.++....
T Consensus 985 l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhc
Confidence 7776665521 1111 11456666777777777777777764333221 22344455566666555444
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.32 E-value=3.9 Score=41.18 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-I-ELD--AVVWGALLS 574 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~ 574 (680)
..-..+..++.+.|+.++|++.+++|.+.... ....+...|+.+|...+.+.++..++.+.. + -|. ...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33345666777889999999999999854322 345567789999999999999999988874 1 232 344555443
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHcCCCC
Q 005732 575 ACWFWMN---------------MEVGERAAQKMFGLDKK 598 (680)
Q Consensus 575 ~~~~~g~---------------~~~a~~~~~~~~~~~p~ 598 (680)
.....++ ...|.+.+.++++.+|-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3333332 23456788888887765
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.21 E-value=14 Score=39.54 Aligned_cols=275 Identities=10% Similarity=-0.015 Sum_probs=168.3
Q ss_pred hhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCh
Q 005732 331 VDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISG-----YVQNNLHEKALQLYMTMRK-------LAIDRTR 398 (680)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~A~~~~~~m~~-------~~~~p~~ 398 (680)
...+.+.++...+.|. ...-..+..+ +....+.+.|+.+|+.+.. .| ..
T Consensus 228 ~~~a~~~~~~~a~~g~----------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP 288 (552)
T ss_pred hhHHHHHHHHHHhhcc----------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 4567888888877662 2222222222 3456789999999999877 45 33
Q ss_pred hhHHHHHHHhcccC-----ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh-cCChHHHHHHHhcCCC-CCHHHHHHHH
Q 005732 399 STFSVLFHACSCLG-----SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-CGSINDAQASFSSISS-PNVAAWTALM 471 (680)
Q Consensus 399 ~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~ 471 (680)
.....+..+|.+.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|..... -....+-.+.
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la 367 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLA 367 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34555666665533 6677999999999888 4444333222222222 2457889999987764 3444443444
Q ss_pred HHHH----HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---
Q 005732 472 NGYS----HHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL--- 544 (680)
Q Consensus 472 ~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--- 544 (680)
.+|. ...+.+.|..++++..+.| .|...--...+..+.. +.++.+.-.+..+...|.+.....-..+....
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEED 445 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccc
Confidence 3332 2347789999999999988 4443333333444444 77777777776666655443222221122111
Q ss_pred Hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc-C-
Q 005732 545 GR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL-G- 614 (680)
Q Consensus 545 ~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g- 614 (680)
.. ..+.+.+...+.+...+-+......+...+.. ..+.+.|...|.++.... +.....++..+..- |
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~ 522 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGI 522 (552)
T ss_pred ccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCc
Confidence 11 22556677777777555566666666665543 346889999998887777 67788888887652 2
Q ss_pred -CchHHHHHHHHHhhCC
Q 005732 615 -KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 615 -~~~~A~~~~~~~~~~~ 630 (680)
.+..|.+++++..+.+
T Consensus 523 ~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 523 KVLHLAKRYYDQASEED 539 (552)
T ss_pred chhHHHHHHHHHHHhcC
Confidence 2678888888877644
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.16 E-value=1 Score=41.29 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=70.2
Q ss_pred HHHHhcCC--CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 005732 453 QASFSSIS--SPNVAAWTALMNGYSH-----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG------------ 513 (680)
Q Consensus 453 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g------------ 513 (680)
+..|..+. +.|-.+|...+..+.. .+..+-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 3566666666666543 3455666667788888888888888888888765432
Q ss_pred ----CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 514 ----LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 514 ----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
+-+=++.++++|...|+.||..+-..|+.++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2344788999999999999999999999998887754
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.13 E-value=0.61 Score=39.24 Aligned_cols=94 Identities=11% Similarity=-0.054 Sum_probs=53.5
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 536 HYTCVVDLL---GRSGHLHEAEEFIKDM-PIELDAVVW-GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 536 ~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+.+.|+... .+.++.+++..++..+ ...|..... ..-.+.+...|++.+|+++++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344444433 3566777777777776 244543322 22233455677777777777777777776665556666666
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|+. +-..+-+++.+.+
T Consensus 89 ~~~~D~-~Wr~~A~evle~~ 107 (160)
T PF09613_consen 89 YALGDP-SWRRYADEVLESG 107 (160)
T ss_pred HHcCCh-HHHHHHHHHHhcC
Confidence 655553 2344444455443
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.04 E-value=0.61 Score=38.46 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=30.5
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 547 SGHLHEAEEFIKDM-PIELDAVVW-GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
.++.+++..+++.+ ...|+..-. ..-++.+...|++.+|.++++...+-.+..+-.-..++..+...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 45555555555554 123321111 1122233445555555555555555544444334444444444444
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.99 E-value=0.17 Score=29.89 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556666666666666666666666653
No 285
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=1.2 Score=41.85 Aligned_cols=161 Identities=13% Similarity=-0.016 Sum_probs=118.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHHhcCChH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSY---GVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
..+|+.-+|...++++.+. .+.|...+...-.+|.-.|+...-...++++... +++-....-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888888988874 3446777888888999999999999999988843 22222333345566677899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC----CchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 552 EAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP----ISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 552 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+|++.-++. .+.| |...-.++...+.-.|+..++.++..+--..-... ...|.+.+-.+...+.++.|++++++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999987 4443 66777777777888999999999887753322221 23477888888889999999999987
Q ss_pred HhhCCCccCCc
Q 005732 626 LTHLEVKKDPG 636 (680)
Q Consensus 626 ~~~~~~~~~~~ 636 (680)
=.-+.+.++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 55444556555
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=5.2 Score=34.90 Aligned_cols=132 Identities=10% Similarity=-0.014 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFV--GVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVV 541 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 541 (680)
.|..++.+.. .+.+ +.....+++.....+....++. .+...+...|++++|...++.........+ ...--.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444432 3333 5555566666543222222222 234466778888888888887764221111 11122456
Q ss_pred HHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 542 DLLGRSGHLHEAEEFIKDMPIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
......|.+++|++.++...-+. .+.....-+.++...|+-++|+..|+++++.++++
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 67778899999999988874111 23334445567888899999999999998887554
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.54 E-value=22 Score=40.17 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=63.4
Q ss_pred CChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HhccCCHHHHHHHH
Q 005732 447 GSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA----CVRAGLVNEGMKIF 522 (680)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~~~~g~~~~A~~~~ 522 (680)
++++.|...+.++. ...|.-.+..--++|-+.+|+.+ .+|+...+.....+ +...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555555444443 11222222223344555555444 35565555444433 34455666665555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 523 RSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVV--WGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
+..=+ ...-+.+|..+|+|.+|+.+..++...-+... -..|..-+...++.-+|-.+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 44321 11234667777888888887777743333322 245555566666665555555443
No 288
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=8.1 Score=34.77 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHh--cCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHH-----HHHHHHHHHHh-
Q 005732 513 GLVNEGMKIFRSMKS--YGVVPTL---EHYTCVVDLLGRSGHLHEAEEFIKDMP---IELDAV-----VWGALLSACWF- 578 (680)
Q Consensus 513 g~~~~A~~~~~~~~~--~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~-----~~~~l~~~~~~- 578 (680)
.+++.|+..++..-+ .|-..+. .++-.....-...+++.+|+++|++.. ...+.. -|..-...|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455555555555441 1112222 222333344456788999999998872 222222 12111222322
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCch
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
..|.-.+.+.+++-.+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 378888888899999999985444
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.22 E-value=0.19 Score=29.57 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999987754
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.10 E-value=20 Score=38.76 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=49.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccc-hhhHHHHHHHhcCCHHH
Q 005732 224 VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLN-ASNSLINGLISMGRIED 302 (680)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 302 (680)
+|.-+....++..--..++.+.+.|+. +...-..|+.+|.+.++.+.-.+..+........ -....+..+.+.+-.++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence 333444444444444445555555533 3333444555555555555555554444311110 11333444444444444
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 303 AELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 303 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
|.-+-.+... +......+ +-..+++++|.+.+..+.
T Consensus 482 a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 4443333322 12222222 233456666666666653
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.09 E-value=0.23 Score=29.89 Aligned_cols=28 Identities=11% Similarity=-0.070 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
++..|+..|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888999999888886543
No 292
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.66 Score=41.45 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=67.4
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHH
Q 005732 543 LLGRSGHLHEAEEFIKDM-PIELDAV-VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (680)
.|....+++.|+..+.+. .+.|+.. .|..=+.++.+..+++.+..-.++++++.|+.....+.++..+.....+++|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 344556677777766655 5677764 44555666777889999999999999999999888999999999999999999
Q ss_pred HHHHHHhh
Q 005732 621 DIRKRLTH 628 (680)
Q Consensus 621 ~~~~~~~~ 628 (680)
..+.+..+
T Consensus 99 ~~Lqra~s 106 (284)
T KOG4642|consen 99 KVLQRAYS 106 (284)
T ss_pred HHHHHHHH
Confidence 99988754
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=22 Score=38.21 Aligned_cols=170 Identities=11% Similarity=0.193 Sum_probs=95.4
Q ss_pred HHHhhcCCCHHHHHHHHhhcC--CC---ccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 260 IEFYCGCEAFDGAMRVYDRLE--NP---CLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
++.+.+.+.+++|++..+... .+ ........+..+...|++++|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 556677788888888887766 22 1223456677777888888888888888777777777766666666654433
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCCh
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSL 414 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 414 (680)
..+ +.... ...+...|..++..+.. .+...-.++..+ .+++...-..++++.
T Consensus 443 a~~---lPt~~-------------~rL~p~vYemvLve~L~-~~~~~F~e~i~~-----Wp~~Lys~l~iisa~------ 494 (846)
T KOG2066|consen 443 APY---LPTGP-------------PRLKPLVYEMVLVEFLA-SDVKGFLELIKE-----WPGHLYSVLTIISAT------ 494 (846)
T ss_pred hcc---CCCCC-------------cccCchHHHHHHHHHHH-HHHHHHHHHHHh-----CChhhhhhhHHHhhc------
Confidence 222 11111 12456677777777766 222222222211 122222211222111
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVA 465 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (680)
-.++.+. .-+......|+..|...++++.|.+++-.+.+++..
T Consensus 495 ------~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 495 ------EPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred ------chHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 0111111 112223344888889999999999988888765543
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.43 E-value=9.8 Score=33.80 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++|+.|+..+...|+.++|..+++-....+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456667777777777777777776655443
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.42 E-value=0.19 Score=42.53 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=23.3
Q ss_pred HHHHHhhcCCChhHHHHhhccCC----CCChhhHHHHHHHHHcCCChhHHHHHHH
Q 005732 23 KAITECGRNGQLVTARNLFDQMP----IRTVVSWNTMLCGYSKWAKFDESLSLVS 73 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 73 (680)
.+|..+.+++.+....++++.+. ..+....+.++..|++.+..+...+.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34445555555555554444432 1234445555555555544444444443
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.30 E-value=1 Score=42.20 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+..++..+...|+.+.+...+++.+..+|-+...|..+..+|.+.|+...|++.++++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555555543
No 297
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.25 E-value=10 Score=33.68 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
|.-+..||-+.--+...|+++.|.+.|+...+.+..-+-...+.-| ++--.|++.-|.+-+...-+.. +.|+. .++
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D-~~DPf--R~L 171 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD-PNDPF--RSL 171 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC-CCChH--HHH
Confidence 4557789989888999999999999999998754333333333322 2334678888877666665554 33332 222
Q ss_pred HH-HHHhcCChHHHHH-HHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHh
Q 005732 440 VD-MYSRCGSINDAQA-SFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-------AATFVGVLSACV 510 (680)
Q Consensus 440 ~~-~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~~~~ 510 (680)
-- .--+.-++.+|.. +.++..+.|..-|..-+-.|.- |+.. ...+++++..- -.-+ ..||-.|..-+.
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHh
Confidence 11 1112334555543 3344555555555554443322 1111 12233333331 1111 235566666667
Q ss_pred ccCCHHHHHHHHHHHHh
Q 005732 511 RAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~ 527 (680)
..|+.++|..+|+-...
T Consensus 249 ~~G~~~~A~~LfKLaia 265 (297)
T COG4785 249 SLGDLDEATALFKLAVA 265 (297)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 77777777777776664
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.11 E-value=5.1 Score=35.10 Aligned_cols=93 Identities=18% Similarity=0.096 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCCh----hH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSY---GVVPTL----EH 536 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~ 536 (680)
.+..+...|++.|+.+.|++.|.++.+....|. ...+..++......+++..+...+.++... +..++. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 445566666667777777777777666443333 233445556666666666666666655521 111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
|.. -.+...+++.+|.+.|-+.
T Consensus 118 ~~g--L~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEG--LANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHH--HHHHHhchHHHHHHHHHcc
Confidence 111 1233456777777666655
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.48 E-value=2 Score=40.29 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH---
Q 005732 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK--- 391 (680)
Q Consensus 315 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--- 391 (680)
..++..++..+...|+.+.+...++++...+ +-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 3456677788888888999999999988887 77899999999999999999999999998865
Q ss_pred --CCCCCChhhHHHHHHH
Q 005732 392 --LAIDRTRSTFSVLFHA 407 (680)
Q Consensus 392 --~~~~p~~~~~~~ll~~ 407 (680)
.|+.|...+.......
T Consensus 219 edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 219 EELGIDPAPELRALYEEI 236 (280)
T ss_pred hhcCCCccHHHHHHHHHH
Confidence 4666665554444333
No 300
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.41 E-value=6.4 Score=37.80 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 481 SEAVLLFEIMLEQDIVPNA--ATFVGVLSACVRAGL--VNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
+.++.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4566777777777766542 223333332222222 346777888888888887777776555443
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.40 E-value=0.36 Score=28.41 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988754
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.37 E-value=10 Score=32.14 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=44.5
Q ss_pred hccCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-IELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
...++.+.+..++..+.-..+ .+...++. ...+.+.|+|.+|+.+|+++. ..|....-..|+..|....+-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH
Confidence 345566666666665553211 11222222 234556677777777777762 33444444555555554443333444
Q ss_pred HHHHHHcCCCCC
Q 005732 588 AAQKMFGLDKKP 599 (680)
Q Consensus 588 ~~~~~~~~~p~~ 599 (680)
+-+++++..+++
T Consensus 99 ~A~evle~~~d~ 110 (160)
T PF09613_consen 99 YADEVLESGADP 110 (160)
T ss_pred HHHHHHhcCCCh
Confidence 455566665543
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.30 E-value=23 Score=36.04 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=114.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
+.|.....+++..+....++.-.+.+-.++.. .+-..|..++.+|... ..++-..+|+++.+.. -|......-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 44445555666666666666666666665553 5566777778888777 5677778888887743 34333433333
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVP-----TLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELDAVVWGALLSACWF 578 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 578 (680)
-+...++.+.+...|.++..+=++. -...|..|...- ..+.+....+..++ +..--...+..+..-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3444477777888887776432221 122343333211 33455555555544 222334445555566677
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh--------------------cCCchHHHHHHHHHh
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV--------------------LGKWGKKMDIRKRLT 627 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 627 (680)
..++++|++++..+++.+..+..+...++.-+.. -.++.++..-|++..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 8888888888888888887776665555555544 345666666666654
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.16 E-value=10 Score=32.58 Aligned_cols=134 Identities=7% Similarity=-0.035 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhc--CChhhHHHHhccCCCCCe
Q 005732 104 KQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQC--NLMSDAFDVFIKMPKKDV 181 (680)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~ 181 (680)
.+..+.+.+.+++|+...+..+++.+.+.|++.....+++.-.-+|.......+-.+... .-..-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 345566667889999999999999999999999999988865544433333322222111 11345556666554
Q ss_pred eeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005732 182 VVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC 247 (680)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 247 (680)
..+..++..+...|+ +-+|+++.+..... +......++.+..+.+|...--.++.-..+.
T Consensus 90 ~~~~~iievLL~~g~-vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQ-VLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhHHHHHHHHHhCCC-HHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 245667778888888 88888887665322 2333456677777777766666666655554
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.00 E-value=0.54 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 603 YVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+..++.++.+.|++++|.+.++++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555555555555555555444
No 306
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.88 E-value=8.5 Score=32.81 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVP 497 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 497 (680)
..|.-+-.+.|++.+|.++|..+......|
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 344445556666666666666665533333
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.83 E-value=0.42 Score=26.14 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=18.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.76 E-value=1 Score=29.89 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
...+..++.+.|++++|.+..+.+++.+|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34466678899999999999999999999985443
No 309
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.74 E-value=3.3 Score=33.53 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=35.2
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGHL---HEAEEFIKDM-P-IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.++..+--.+..++.+..+. .+.+.++++. + -.| .......|.-++.+.|+++++.++++..++.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34444444455555554433 3344455544 1 222 123333444456666666666666666666666653
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.54 E-value=0.42 Score=27.78 Aligned_cols=31 Identities=6% Similarity=-0.064 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+..++.++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456778889999999999999999999974
No 311
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.53 E-value=1 Score=37.98 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHh
Q 005732 224 VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYD 277 (680)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (680)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544434445555555555555555555555554
No 312
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.22 E-value=13 Score=31.75 Aligned_cols=131 Identities=10% Similarity=0.094 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-HHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE-HYTCV 540 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 540 (680)
....|..-+. +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444443 356778899999999988876542211 12223334567888999999999888544444332 22222
Q ss_pred --HHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 541 --VDLLGRSGHLHEAEEFIKDMP---IELDAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 541 --~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
...+...|.+++...-++-+. .+.....-..|.-+-.+.|++..|...|.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 233567888998888888773 222345567777788899999999999998877
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.16 E-value=0.88 Score=28.21 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+++.+...+...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555555443
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.85 E-value=6.2 Score=39.33 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=79.4
Q ss_pred ccCCHHHHHHH-HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 511 RAGLVNEGMKI-FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 511 ~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
..|+.-.|-+- +..+....-.|+.... ........|+++.+...+.... +.....+...++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555554443 3333333333333322 2344566777887777777662 33455666777777777888888888
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 005732 588 AAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGC 637 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 637 (680)
..+-++..+-++++.....+......|-++++.-.|+++.....+.+.|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 88888877777766666555566667778888888888877666666663
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.66 E-value=23 Score=33.87 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=14.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005732 575 ACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~ 593 (680)
.+.+.++++.|.+.|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3557889999999888654
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.64 E-value=71 Score=39.47 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=54.4
Q ss_pred HHHhccCChhhHHHHHHHH----HHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhh-cCCCccchhhHHHHHHHhcCCH
Q 005732 226 RACARLGAFCEGKVVHGLL----IKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDR-LENPCLNASNSLINGLISMGRI 300 (680)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 300 (680)
.+-.+.+.+..|...++.- .+. ......+-.+...|..-+++|....+... ...++ . ..-+......|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l-~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--L-YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--H-HHHHHHHHhhccH
Confidence 3444555555555555542 111 11122333344466666666655555442 11111 1 2333444455666
Q ss_pred HHHHHHHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCc
Q 005732 301 EDAELIFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 301 ~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
..|...|+.+.+ |+ ..+++-++......|.++...-..+....
T Consensus 1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred HHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 666666666655 33 44566666655556666655554444443
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.47 E-value=20 Score=32.97 Aligned_cols=247 Identities=15% Similarity=0.161 Sum_probs=141.8
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CChhhHH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK---LAID--RTRSTFS 402 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~--p~~~~~~ 402 (680)
....++|+.-|.+..+...- ...-.-.+...+|..+.+.+++++.++.|.++.. +.+. -+....+
T Consensus 40 e~~p~~Al~sF~kVlelEgE----------KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN 109 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGE----------KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN 109 (440)
T ss_pred ccCHHHHHHHHHHHHhcccc----------cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34677777777776653210 0012233455678889999999999999998853 2222 2445677
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhc-----CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------C
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKT-----PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---------------P 462 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~ 462 (680)
.++...+.+.+.+--..+++.-.+. +-..--.+-..|...|...|++.+..++++++.. .
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 7777777777766665555543321 1112222334566777777888887777776542 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hccCCHHHHHHHH-HHHH---hcCCCC
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATFVGVLSAC-----VRAGLVNEGMKIF-RSMK---SYGVVP 532 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~-~~~~---~~~~~~ 532 (680)
-...|..-|..|...++-..-..++++...- ..-|.+... .+++-| .+.|.+++|..-| +... +.|-+-
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 2356777788888888888888888877652 223444433 344544 4578888876544 4444 334332
Q ss_pred ChhH--HHHHHHHHHhcCChHHHHHHHH--hC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 533 TLEH--YTCVVDLLGRSGHLHEAEEFIK--DM-P--IELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 533 ~~~~--~~~l~~~~~~~g~~~~A~~~~~--~~-~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
...+ |-.|...+.+.|-- -|+ +. + ..|.......++.+|. .+++.+-++++..
T Consensus 269 RttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 269 RTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred hhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 2222 34455555555411 111 11 2 3444555677777764 4566655555444
No 318
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.39 E-value=35 Score=35.57 Aligned_cols=138 Identities=8% Similarity=0.033 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHH
Q 005732 48 TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI-LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLL 126 (680)
Q Consensus 48 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (680)
+...|.++|.---.....+.+..++..+... -|.-+.|-.- ...=.+.|..+.+..+|+..+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556776666555555556666677777644 4555443322 22223456677777777776643 344555554444
Q ss_pred HHH-HcCCChHHHHHHHhhhcCC------chhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHH
Q 005732 127 FFY-ANCFEIEEAKRVFDELHED------NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLI 188 (680)
Q Consensus 127 ~~~-~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll 188 (680)
..+ ...|+.+.....|+....- ....|...|..-..++++.....+++++.+-....|+..-
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHH
Confidence 333 3446777777777665431 3344666666666677777777777766654444444333
No 319
>PRK09687 putative lyase; Provisional
Probab=88.14 E-value=25 Score=33.61 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHhccCC
Q 005732 313 ANSISYNSMIKGYAVYGQ 330 (680)
Q Consensus 313 ~~~~~~~~ll~~~~~~~~ 330 (680)
+|.......+.++...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 455555555555555543
No 320
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.45 E-value=8.2 Score=37.07 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCCCCcchhhhhHHHHHHc--C----CChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccC
Q 005732 103 GKQIHCLVLKSGYECFEFVGSGLLFFYAN--C----FEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKM 176 (680)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 176 (680)
...+++.+.+.|+..+.+++-+-...... . -....|..+++.|.+..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL------------------------ 136 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL------------------------ 136 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc------------------------
Confidence 44456666666666555554442222222 1 12445666677765433110
Q ss_pred CCCCeeeHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCCCCCc-chHHHHHHHHhccCC--hhhHHHHHHHHHHhCCCCC
Q 005732 177 PKKDVVVWTKLISGYAKSVDG-CEKALKLFRWMRESGENMPNE-YTFDSVIRACARLGA--FCEGKVVHGLLIKCGFEFD 252 (680)
Q Consensus 177 ~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 252 (680)
-.++-.++..++..-...-+. .+.+..+|+.+.+.|...-|. ...+.++..+..... ...+..+++.+.+.|+++.
T Consensus 137 Ts~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 137 TSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred cCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 123445555555442111110 366778888888877765333 333444444333322 3477888888999998887
Q ss_pred chHHHHHHH
Q 005732 253 ESIGGALIE 261 (680)
Q Consensus 253 ~~~~~~li~ 261 (680)
...|..+.-
T Consensus 217 ~~~yp~lGl 225 (297)
T PF13170_consen 217 YMHYPTLGL 225 (297)
T ss_pred cccccHHHH
Confidence 777665543
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.35 E-value=22 Score=32.15 Aligned_cols=91 Identities=4% Similarity=-0.095 Sum_probs=49.1
Q ss_pred HHHHHHhc-CChHHHHHHHHhCC-----CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch------HH
Q 005732 540 VVDLLGRS-GHLHEAEEFIKDMP-----IELDAV---VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA------YV 604 (680)
Q Consensus 540 l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~------~~ 604 (680)
+...|... .+++.|+..++..+ -+.+.. .+..+...-...+++.+|+.+|++.-...-+++-. |.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444443 56667777776652 111222 22222223345899999999999987766555322 22
Q ss_pred -HHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 605 -ILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 605 -~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.-+-.+...++.-.+.+.+++..+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 22222333355555666666665543
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=2.5 Score=39.52 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHH
Q 005732 64 KFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVL 111 (680)
Q Consensus 64 ~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 111 (680)
+++.++.++..-...|+-||..+++.+|..+.+.++...|.++..+|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344455554444445555555555555555555555444444444443
No 323
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=1.6 Score=39.28 Aligned_cols=62 Identities=6% Similarity=-0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+.....++...|++-++++....++...|.+..+|+..+.+....=+.++|.+-+.++++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 44445566678999999999999999999999999999999988888889998888887654
No 324
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.25 E-value=34 Score=34.14 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=27.7
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhC
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG-RSGHLHEAEEFIKDM 560 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 560 (680)
.+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ ++++++--+++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44555556666666655555544445555555555443 445555555555443
No 325
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.71 E-value=2 Score=43.72 Aligned_cols=116 Identities=12% Similarity=-0.002 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~ 573 (680)
.|-...++...-.+...|+...|...+.......+.-.-...-.|...+.+.|...+|-.++.+. . ....+.++..++
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 33333333333334567888899988888774333323334445667777888888888877664 2 234567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
.++....+++.|++.++++++++|+.+..-..|..+-+
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 89999999999999999999999999887766655543
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.60 E-value=1.3 Score=25.96 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=53 Score=35.47 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=97.9
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC---cchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHH
Q 005732 94 CAQLNSLIDGKQIHCLVLKSGYEC---FEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAF 170 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 170 (680)
+...+.+++|..+.+... |..| ...+....+..+.-.|++++|-.....|...+..-|...+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334445555544433322 2233 34556777888888899999999999998888888988888888888887766
Q ss_pred HHhccCCC-CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005732 171 DVFIKMPK-KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGF 249 (680)
Q Consensus 171 ~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 249 (680)
.++-.-+. -++..|..++..++.. + ..-|.+.++.- +...|..+...-+...+ ..+.
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~~-~-----~~~F~e~i~~W----p~~Lys~l~iisa~~~q----------~~q~-- 501 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLAS-D-----VKGFLELIKEW----PGHLYSVLTIISATEPQ----------IKQN-- 501 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHHH-H-----HHHHHHHHHhC----ChhhhhhhHHHhhcchH----------HHhh--
Confidence 66543332 3667788888888762 2 23344444332 22233322221111111 1111
Q ss_pred CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q 005732 250 EFDESIGGALIEFYCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (680)
.-+......|+..|...+++..|...+-...
T Consensus 502 Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 502 SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 1122233348888888999999988887665
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.22 E-value=6.3 Score=34.54 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE--TTFSTILSVCAQLNSLIDGKQIHCLVLKS 113 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (680)
..+..+...|++.|+.+.|++.|.++++....+.. ..+..+|+.+...+++..+..........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36777888888888888888888888876554443 35667777777778887777776666544
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.85 E-value=1.3 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++..++.+|...|++++|.+++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998763
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.81 E-value=1.6 Score=24.59 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
+..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555544
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.69 E-value=8 Score=33.38 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=40.1
Q ss_pred CCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 562 IELD-AVVWGALLSACWFWM-----------NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 562 ~~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.|+ ...+..++.++...+ .+++|...|+++...+|++ ..|..-.... ..|-++..++.++
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHH
Confidence 5665 566667776664332 4677888888999999998 5555444443 3577888888777
Q ss_pred CCccC
Q 005732 630 EVKKD 634 (680)
Q Consensus 630 ~~~~~ 634 (680)
+....
T Consensus 137 ~~~~q 141 (186)
T PF06552_consen 137 GLGQQ 141 (186)
T ss_dssp SS---
T ss_pred Hhhhh
Confidence 65443
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.45 E-value=6.2 Score=35.81 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHcCCCC--C----CchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 566 AVVWGALLSACWFWMNME-------VGERAAQKMFGLDKK--P----ISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
...+.-+.+.|...|+.+ .|...|+++.+.... . ....+.+|.+..+.|++++|.+.+.++...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334555666666667644 444555555554332 1 3457788999999999999999999987654
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.22 E-value=4.3 Score=26.97 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++.++.++.+.|++++|.+..+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4678889999999999999999999875
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.07 E-value=16 Score=32.03 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
.++.+.+.++.|++-..+. .+.|+ ...+.--..+|.+...++.|+.-|+++++.+|....+-...+++--......++
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 4455566666666555444 33332 111222233566777889999999999999998765555555443332222222
Q ss_pred --HHHHHHHhhCC
Q 005732 620 --MDIRKRLTHLE 630 (680)
Q Consensus 620 --~~~~~~~~~~~ 630 (680)
.+++.++++.|
T Consensus 222 mKee~m~kLKdlG 234 (271)
T KOG4234|consen 222 MKEEMMEKLKDLG 234 (271)
T ss_pred HHHHHHHHHHHhh
Confidence 23455555544
No 335
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.90 E-value=0.75 Score=27.17 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=21.1
Q ss_pred hhhhcccCccchhhHHHHHhhcCCChhHHH
Q 005732 9 QTLMTQETLIVSTNKAITECGRNGQLVTAR 38 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 38 (680)
+.+...|-|+.+|+.+...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344556667777777777777777777775
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.66 E-value=7.4 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 005732 158 VGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESG 212 (680)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 212 (680)
..++..|++++|..+.+.+.-||...|-+|-..-. |- ......-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rl--Gl-~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRL--GL-GSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhh--cc-HHHHHHHHHHHHhCC
Confidence 35677888888888888888888888877765543 33 345555566666655
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.58 E-value=26 Score=36.44 Aligned_cols=149 Identities=14% Similarity=0.084 Sum_probs=76.0
Q ss_pred hcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005732 445 RCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRS 524 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 524 (680)
-.|+++.|..++-.+.++ ..+.+++.+-++|-.++|+++ .+|..-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346666666655555422 233444445555655555543 2332211 1122345666666666554
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 525 MKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-..+.+.+..+
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N----- 725 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN----- 725 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----
Confidence 33 34456677777777777777777776652 13344444555555554444444444444333
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 005732 605 ILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~ 625 (680)
.-..+|...|+++++.+++.+
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 122234455666666665543
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.45 E-value=67 Score=35.00 Aligned_cols=176 Identities=15% Similarity=0.044 Sum_probs=92.4
Q ss_pred HHHHHHHHHH-hCCCCc--chhhhhHHHHHH-cCCChHHHHHHHhhhcC---Cchh------HHHHHHHHHHhcCChhhH
Q 005732 103 GKQIHCLVLK-SGYECF--EFVGSGLLFFYA-NCFEIEEAKRVFDELHE---DNEL------LWSLMLVGYVQCNLMSDA 169 (680)
Q Consensus 103 a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~---~~~~------~~~~l~~~~~~~~~~~~A 169 (680)
|.++++.+.+ ..++|. ..++-.+...+. ...+.+.|+..+++... ++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555666653 233332 244455566555 56778888888876531 1111 1223344455544444 7
Q ss_pred HHHhccCCC----CCe----eeHHHH-HHHHHhCCCChHHHHHHHHHHHHcCCCC--CCcchHHHHHHHHh--ccCChhh
Q 005732 170 FDVFIKMPK----KDV----VVWTKL-ISGYAKSVDGCEKALKLFRWMRESGENM--PNEYTFDSVIRACA--RLGAFCE 236 (680)
Q Consensus 170 ~~~~~~~~~----~~~----~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~~~~~--p~~~~~~~ll~~~~--~~~~~~~ 236 (680)
...+++... ... ..|..+ +..+...++ +..|++.++.+....... |-...+..++.+.. +.+..+.
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d-~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKD-YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 777765431 111 223333 223333356 788999998886543211 13444445555544 4455566
Q ss_pred HHHHHHHHHHhCC---------CCCchHHHHHHHHhh--cCCCHHHHHHHHhhcC
Q 005732 237 GKVVHGLLIKCGF---------EFDESIGGALIEFYC--GCEAFDGAMRVYDRLE 280 (680)
Q Consensus 237 a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 280 (680)
+.+.++.+..... .|...++..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666643322 234556666666544 5777777777766663
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.96 E-value=69 Score=34.80 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHhcCChHHHHHHHHhCCCCC
Q 005732 544 LGRSGHLHEAEEFIKDMPIEL 564 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~p 564 (680)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457889999999999987666
No 340
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=83.45 E-value=52 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhccC---ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcch
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTEA---NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIIS 348 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 348 (680)
..++.-|...|+..+|...++++.-| ....+..++.+.-+.++-...+.+++..-+.|.++
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT 576 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLIT 576 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCcee
Confidence 56788899999999999999988764 35578889999999998888888888887777543
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.34 E-value=11 Score=33.38 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH---hcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 481 SEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK---SYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+.|.+.|-++...+.--++..... +..|....+.++++.++.+.. ..+-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666655543333333333 333444566777777776665 222355666666666666666666655
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.22 E-value=2.4 Score=36.43 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC----chHHHHHHHHHh
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK----WGKKMDIRKRLT 627 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 627 (680)
-+++|+.-|++++.++|+...++..++.+|...+. ..+|..+|++..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 35677778889999999999999999999987653 345555555544
No 343
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.02 E-value=0.89 Score=43.04 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 575 ACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.+.+.+....|++-+..+++++|+.+.-|-..+.+..-.|+|++|.+.+....+.+
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 33344444444444444444444444444444444444444444444444444433
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.72 E-value=3.1 Score=31.51 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 589 AQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+++.++.+|++......++..+...|++++|++.+-++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555443
No 345
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=4.6 Score=37.90 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
++++++.++..=++-|+-||..+++.++..+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 456677776666677777777777777777777777777777766666
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.52 E-value=9.5 Score=29.24 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
+..+-+..+....+.|++......+.+|.+.+++..|.++|+-++ +.|.. ...|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 445555666666788888888888888888888888888888888 54433 22565544
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.48 E-value=28 Score=29.12 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHhhcC--CCccch-hhHHHHHHHhcCCHHHHHHHHHHhcc
Q 005732 266 CEAFDGAMRVYDRLE--NPCLNA-SNSLINGLISMGRIEDAELIFNRLTE 312 (680)
Q Consensus 266 ~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (680)
.++.+++..+++.+. +|...- -..-.-.++..|++++|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455555555555544 222222 11122233444555555555555444
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.39 E-value=2.5 Score=26.77 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 604 VILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999988654
No 349
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.06 E-value=7.5 Score=36.97 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-- 547 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 547 (680)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-.......+ ...+.+|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 4568999999999999998887 567 78888888889999988888887777666432 2334555554
Q ss_pred -----CChHHHHHHHHhC-CCCCC
Q 005732 548 -----GHLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 548 -----g~~~~A~~~~~~~-~~~p~ 565 (680)
|+..+|.+=++.. ...|+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcc
Confidence 4555555544443 45665
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.94 E-value=5.6 Score=36.99 Aligned_cols=60 Identities=17% Similarity=0.020 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+......|...|.+.+|.++.++++.++|-+...+..+...|...|+--+|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444556788899999999999999999999999999999999999998888888887764
No 351
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.56 E-value=12 Score=28.41 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
++.+-++.+....+.|++......+.+|.+.+++..|.++|+-++ +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 445555666666778888888888888888888888888888777 4432 333454443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.34 E-value=5.7 Score=35.25 Aligned_cols=72 Identities=17% Similarity=0.023 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSN 608 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 608 (680)
.+.-+..+.+.+.+.+|+...++- +-+| |...-..++..++-.|++++|..-++-+-++.|+.. +.|.+++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345567788889999999887654 5455 566667788888999999999999999999998863 23444443
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.45 E-value=93 Score=33.85 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHhcCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---cC
Q 005732 440 VDMYSRCGSINDAQASFSS--ISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNAATFVGVLSACVR---AG 513 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~---~g 513 (680)
...+.-+|+++.|++.+-+ ....+.+.+...+.-|.-.+-..... ..+.... -.|....+..|+..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 3445567777877777766 22234444333333221111111100 2222110 01112456666666654 56
Q ss_pred CHHHHHHHHHHHHh
Q 005732 514 LVNEGMKIFRSMKS 527 (680)
Q Consensus 514 ~~~~A~~~~~~~~~ 527 (680)
++.+|.+++--+..
T Consensus 342 d~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 342 DPREALQYLYLICL 355 (613)
T ss_dssp -HHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 77778877777664
No 354
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.20 E-value=66 Score=31.97 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDMPIEL------DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
..+|..++..+.+.|+++.|...+..+.... .+.+...-+..+...|+..+|...++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666777777777777666652111 334444444555566777777776666655
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.18 E-value=2.1 Score=23.29 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=15.6
Q ss_pred hhhHHHHHhhcCCChhHHHHhhc
Q 005732 20 STNKAITECGRNGQLVTARNLFD 42 (680)
Q Consensus 20 ~~~~li~~~~~~g~~~~A~~~~~ 42 (680)
+...+..++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456677777777777777665
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.98 E-value=50 Score=30.53 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=124.2
Q ss_pred CCChhHHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHhcccCChHHHHHHHHHHHhc---CC--C
Q 005732 360 ERNPVTWNSMISG-YVQNNLHEKALQLYMTMRKLAIDRT---RSTFSVLFHACSCLGSLQQGQLLHAHLVKT---PF--E 430 (680)
Q Consensus 360 ~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~ 430 (680)
.|++..-|..-.+ -.+..++++|+.-|++..+..-.-. ...+..++....+.+++++....+.++... .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 5665544432221 1234578999999999887432222 335566788889999999999888887642 11 2
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC----
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNV----AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP---- 497 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---- 497 (680)
.+....|++++..+.+.+.+--.+.++.-.. .+. .+-..|...|...+.+.+..++++++...-...
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 3456678888877777777666666654321 222 233457777888888888888888887642111
Q ss_pred C-------HHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHH----HHHhcCChHHHH-HHHHhC
Q 005732 498 N-------AATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVD----LLGRSGHLHEAE-EFIKDM 560 (680)
Q Consensus 498 ~-------~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~----~~~~~g~~~~A~-~~~~~~ 560 (680)
| ...|..-+..|....+-.....++++.. -....|.+.+...+-. ...+.|++++|- .+|+..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 1346666777777777777778887776 2233455554443222 233567777764 344433
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.97 E-value=13 Score=32.89 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=55.6
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh---CCCCCchHHHHHHHHhhcCC
Q 005732 191 YAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC---GFEFDESIGGALIEFYCGCE 267 (680)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g 267 (680)
..+.|+ +.|.+.|-++...+..- ++.....+...|. ..+.+++..++-..++. +-.+|+..+.+|+..|.+.|
T Consensus 117 Wsr~~d--~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD--QEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc--HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 345555 88888888887776653 5555555555554 67788888888877664 23567788888888888888
Q ss_pred CHHHHH
Q 005732 268 AFDGAM 273 (680)
Q Consensus 268 ~~~~A~ 273 (680)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 877764
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=79.75 E-value=60 Score=31.26 Aligned_cols=146 Identities=8% Similarity=-0.089 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC------
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR----AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG------ 548 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 548 (680)
+...|..+|..+.+.|.. .....|...|.. ..+..+|..++++..+.|..+.......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 345566666655554422 111222222222 2366666666666666654433122223333333221
Q ss_pred -ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC---------
Q 005732 549 -HLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG--------- 614 (680)
Q Consensus 549 -~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 614 (680)
+...|...+.++...-++.....+...|.. ..+.++|...|+++-+.+. ......++ .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 169 YDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 223566777666333355555555555433 3478889999988888777 45666666 666555
Q ss_pred ------CchHHHHHHHHHhhCC
Q 005732 615 ------KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 615 ------~~~~A~~~~~~~~~~~ 630 (680)
+...|...+...-..+
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcC
Confidence 5566666666665554
No 359
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.71 E-value=12 Score=28.40 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHH
Q 005732 67 ESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVL 111 (680)
Q Consensus 67 ~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 111 (680)
++.+-++.+....+-|++....+.+++|.+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455566666667788888888888888888888888888888765
No 360
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.68 E-value=10 Score=36.15 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=71.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM--P--IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~--~--~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
=.+-|.+..++..|...|.+. . -.| +...|+.=..+-...|++..|+.-..+++..+|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 346678888888898888876 1 223 3555666666666789999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhh
Q 005732 614 GKWGKKMDIRKRLTH 628 (680)
Q Consensus 614 g~~~~A~~~~~~~~~ 628 (680)
.++++|..+.++...
T Consensus 167 e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999988877643
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.75 E-value=30 Score=31.01 Aligned_cols=127 Identities=13% Similarity=-0.004 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCChhHHHHHHHHH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSY--GVVPTLEHYTCVVDLL 544 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~ 544 (680)
.+..++.+.+.+...+|+...++-++.. ..|..+-..++..++-.|++++|..-++-+-.. ...+....|..++.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3445667778888999999888877743 224566677888899999999998888776643 2334455666666542
Q ss_pred HhcCChHHHH-HHHHhC--C---CCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHcCCCCCCc
Q 005732 545 GRSGHLHEAE-EFIKDM--P---IELDAVVWGALLSACW-F-WMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 545 ~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~~~~~-~-~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
.+. ++|.-- + -.|.+.-...+..+.. + .|.-+.+..+-+.+++..|.++.
T Consensus 83 -------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 83 -------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred -------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 222 223221 1 1233333334444432 3 33455566667788888887643
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.16 E-value=83 Score=31.43 Aligned_cols=119 Identities=10% Similarity=0.053 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHh---cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKS---YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGAL 572 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 572 (680)
...++..+-..+...|+.+.|.+++++..- ....|. +..+.. -...|. .++. ..-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~-~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRS-NLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhc-ccccCc--------cccCCccccchHHHHHH
Confidence 356677777778888888888888877761 111110 000000 000000 0111 22255555554
Q ss_pred H---HHHHhcCCHHHHHHHHHHHHcCCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHhh
Q 005732 573 L---SACWFWMNMEVGERAAQKMFGLDKK-PISAYVILSNIYA-VLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 573 ~---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 628 (680)
. ..+.+.|-+..|.++.+-+++++|. ||-.....++.|. ++++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4 4567899999999999999999999 6666666666554 67888888888877655
No 363
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=76.78 E-value=2 Score=34.46 Aligned_cols=28 Identities=46% Similarity=0.962 Sum_probs=22.6
Q ss_pred ceeEEEECCeEEEEecCCCCCCChhHHHHHHH
Q 005732 636 GCSWIELNSRVHAFSVEDRNNPNCNVIYATLE 667 (680)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (680)
||||.+. +.|.++|.+||....+...+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~ 29 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKE 29 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHH
Confidence 7899987 999999999999855555443
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.77 E-value=4.9 Score=29.08 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCchHHHH---HHHHHhcCCchHHHHHH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKPISAYVIL---SNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l---~~~~~~~g~~~~A~~~~ 623 (680)
+....+.++|+..++++++..++++.-+..| +.+|+..|++.+++++-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999888876665544 45677888888877764
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.48 E-value=69 Score=30.22 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=78.3
Q ss_pred cCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHH----HHhCCCCCCHhhHHHHHHHHhccCChH-HHH
Q 005732 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVST----MHRSNVKLNETTFSTILSVCAQLNSLI-DGK 104 (680)
Q Consensus 30 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~t~~~ll~~~~~~~~~~-~a~ 104 (680)
+++++++|.+++. + =...+.+.|+...|-++-.. ..+.+++.|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~----------~-Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLY----------S-GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHH----------H-HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHH----------H-HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 4567777777652 2 23334555555555444333 333456666655455544444332111 122
Q ss_pred HHHHHHH---HhC--CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCC
Q 005732 105 QIHCLVL---KSG--YECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKK 179 (680)
Q Consensus 105 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 179 (680)
.+.+.++ +.| ...++..+..+...|.+.|++.+|+..|-.-..++...+..++......|...+ +
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------~ 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------A 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS------------H
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc----------h
Confidence 2223322 222 345778899999999999999999988765544444444334444444444322 2
Q ss_pred CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 005732 180 DVVVWTKLISGYAKSVDGCEKALKLFRWMRES 211 (680)
Q Consensus 180 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 211 (680)
|...-..++..++- ++ ...|...++...+.
T Consensus 141 dlfi~RaVL~yL~l-~n-~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLFIARAVLQYLCL-GN-LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHT-TB-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-cC-HHHHHHHHHHHHHH
Confidence 33344445544443 45 67777777666544
No 366
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.44 E-value=1.2e+02 Score=33.01 Aligned_cols=129 Identities=13% Similarity=0.019 Sum_probs=67.5
Q ss_pred chhHHHHHHHHHH-hcCChhhHHHHhccCC----CCCee-----eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC---
Q 005732 149 NELLWSLMLVGYV-QCNLMSDAFDVFIKMP----KKDVV-----VWTKLISGYAKSVDGCEKALKLFRWMRESGENM--- 215 (680)
Q Consensus 149 ~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~--- 215 (680)
+..++..+...+. ...+++.|...+++.. +++.. ....++..+.+.+. ..|...+++.++.--..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~--~~a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP--KAALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhccCch
Confidence 3445666777776 5788888888888653 22111 12234455555544 44888888876543221
Q ss_pred CCcchHHHH-HHHHhccCChhhHHHHHHHHHHhC---CCCCchHHHHHHHHh--hcCCCHHHHHHHHhhc
Q 005732 216 PNEYTFDSV-IRACARLGAFCEGKVVHGLLIKCG---FEFDESIGGALIEFY--CGCEAFDGAMRVYDRL 279 (680)
Q Consensus 216 p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 279 (680)
+-...|..+ +..+...++...|.+.++.+...- -.|...++..++.+. ...+..+++.+.++++
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 012223333 222223368888888887775542 133334444444333 2345455555555544
No 367
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.38 E-value=70 Score=32.34 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=79.4
Q ss_pred cccCChHHHH-HHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHH
Q 005732 409 SCLGSLQQGQ-LLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAV 484 (680)
Q Consensus 409 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 484 (680)
...|+...|. +++..+....-.|+..... ...+...|+++.+...+....+ ....+..++++...+.|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456665554 4444444443344443333 3446678899999888866553 56677888888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 005732 485 LLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV 531 (680)
Q Consensus 485 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (680)
.+-..|....+. +..............|-++++...|+++...+.+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 998888876665 4444433333445567788999999988865443
No 368
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.24 E-value=27 Score=26.91 Aligned_cols=60 Identities=3% Similarity=0.004 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++..- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 556666777777788888888899999999999999999888877542 222225555544
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.08 E-value=4.7 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..+..++..+...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887654
No 370
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.20 E-value=91 Score=30.97 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISS------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
.+.-+..-|..+|+++.|.+.|.+... ..+..|..+|..-.-.|+|.....+..+... .|+. ..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s---t~~~--~~----- 221 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES---TPDA--NE----- 221 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh---Cchh--hh-----
Confidence 455566667777777777777766442 2233444455555555666555555555544 1211 00
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhc
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP---------IELDAVVWGALLSACWFW 579 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~ 579 (680)
.. ...+.+...++..+...+.+ ++..|.+.|-... +.|...+....+.+++-.
T Consensus 222 ---------------~~-~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtf 283 (466)
T KOG0686|consen 222 ---------------NL-AQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATF 283 (466)
T ss_pred ---------------hH-HHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccC
Confidence 00 11234445666666655554 6666666655441 345333333333343333
Q ss_pred CCHHHH-----HHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 580 MNMEVG-----ERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 580 g~~~~a-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++-+.- -..|+..+++.|. ....+...| .+++....+++++++.
T Consensus 284 dr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 284 DRQDLKLNVIKNESFKLFLELEPQ---LREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred CHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 322222 2345666666664 344444444 5788888888888764
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.73 E-value=1.5e+02 Score=33.40 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=22.7
Q ss_pred hhhhHHHHHHcCCChHHHHHHHhhhcC
Q 005732 121 VGSGLLFFYANCFEIEEAKRVFDELHE 147 (680)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (680)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467888889999999999999888765
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.68 E-value=28 Score=28.45 Aligned_cols=68 Identities=12% Similarity=-0.011 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHc-CCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFG-LDKKP-ISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.++..+-..+.+++.+.. +..+.+.+++.+++ ..|+. ....+.|+..+++.++|+.++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 455555566666665543 45566667777765 33432 3445566667777777777777777766544
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=29 Score=32.40 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=32.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCCHHHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT-------FVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~g~~~~A~~~ 521 (680)
+.+-..+.+++++|+..+.+....|+..+..+ ...+...|.+.|++....+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44555677788888888888888777666543 33445555555555444333
No 374
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.63 E-value=2.5 Score=42.22 Aligned_cols=97 Identities=7% Similarity=-0.045 Sum_probs=63.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYT-CVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNM 582 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 582 (680)
+......++++.|..++.++.+. .|+...|- .=..++.+.+++..|+.=+.++ +..|+ ...|.--+.+|.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44556677888888888888863 45444332 2236677778887777544443 55554 33444445567777888
Q ss_pred HHHHHHHHHHHcCCCCCCchHH
Q 005732 583 EVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
.+|...|+....+.|+++.+-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHH
Confidence 8888888888888888754433
No 375
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=72.83 E-value=11 Score=35.22 Aligned_cols=50 Identities=4% Similarity=-0.096 Sum_probs=35.1
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
.+.|+.++|..+|+.++++.|+++.++..++......++.-+|..++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 45677777777777777777777777777777766666666666666544
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.33 E-value=63 Score=32.57 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=35.9
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHHHhc
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPNAA--TFVGVLSACV--RAGLVNEGMKIFRSMKSY 528 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~g~~~~A~~~~~~~~~~ 528 (680)
.+...+++..|.++|+.+... +.++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888876 454443 3444444554 355677888888877643
No 377
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.77 E-value=22 Score=37.88 Aligned_cols=192 Identities=17% Similarity=0.250 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC------CC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHh
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID------RT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVY 434 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 434 (680)
...+-..++..|-...+++..+++.+.++...-. ++ ...|...++--.+.|+-++|....-.+.+..-+..+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3445566777788888999999999988763200 11 1245555565567788888888877777653232222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL 514 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 514 (680)
+||-+|++- +.|- +-+.|...+..+.|.++|++.-+ +.|+..+=..+...+..+|.
T Consensus 280 -------m~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 280 -------MYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred -------eeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 244444322 1110 11223444556677888888776 66765432222222222222
Q ss_pred -HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 515 -VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 515 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
++...+ +...|. .|-..+++.|.++.-.++|+-.- .+.+-.-..|+.+|.+..+.++
T Consensus 336 ~Fens~E----lq~Igm--------kLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 336 HFENSLE----LQQIGM--------KLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred hccchHH----HHHHHH--------HHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHHHHh
Confidence 111111 111111 12245667777777776665431 1222334567777777777777
Q ss_pred cCCCCC
Q 005732 594 GLDKKP 599 (680)
Q Consensus 594 ~~~p~~ 599 (680)
++.|..
T Consensus 394 KLk~P~ 399 (1226)
T KOG4279|consen 394 KLKPPV 399 (1226)
T ss_pred ccCCce
Confidence 776653
No 378
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.51 E-value=72 Score=33.42 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCC
Q 005732 266 CEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRS 345 (680)
Q Consensus 266 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 345 (680)
.|+++.|..++-.+. ....+.++.-+-..|-.++|+++- +|+... .....+.|+.+.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~s-----~D~d~r---Felal~lgrl~iA~~la~e~---- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALELS-----TDPDQR---FELALKLGRLDIAFDLAVEA---- 663 (794)
T ss_pred hccccccccccccCc---hhhhhhHHhHhhhccchHhhhhcC-----CChhhh---hhhhhhcCcHHHHHHHHHhh----
Confidence 455565555444443 111234444455555555554431 222111 11234567777777776654
Q ss_pred cchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 005732 346 IISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLV 425 (680)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 425 (680)
.+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....
T Consensus 664 ---------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 664 ---------------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred ---------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 3566788999999999999999998887754 3456666777777776666666666
Q ss_pred hcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 005732 426 KTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS 461 (680)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (680)
+.| ..+. ...+|...|+++++.+++.+-..
T Consensus 720 ~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 720 KQG-KNNL-----AFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred hhc-ccch-----HHHHHHHcCCHHHHHHHHHhcCc
Confidence 666 3333 33456778999999988876543
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.43 E-value=7.5 Score=22.06 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 580 MNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 580 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888899999999888887777766543
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.27 E-value=12 Score=28.66 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKP---------ISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+.||+..|.+.+.+.+...... ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788888877777766543222 12345677788889999999999988765
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.27 E-value=99 Score=29.25 Aligned_cols=61 Identities=8% Similarity=0.126 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
+++...+.|...|.+.+|.++.++....+ +.+...|..++..++..|+--.|..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--------------pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--------------PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--------------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45566778999999999999999999987 78889999999999999998888887777743
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.14 E-value=8.2 Score=34.60 Aligned_cols=56 Identities=9% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..+.++.+.|.+++.+++++-|+....|..++....++|+++.|.+.+++..+..+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34567777777788888888777777777777777778888888887777776554
No 383
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.41 E-value=55 Score=25.18 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=40.5
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005732 441 DMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFV 503 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (680)
..+...|++++|..+.+....||...|.+|.. .+.|-.+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34566788888888888887788888877643 45666666666666776665 44444443
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.27 E-value=29 Score=29.01 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 52 WNTMLCGYSKWAKFDESLSLVSTMHRSN-----VKLNETTFSTILSVCAQLNS-LIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 52 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
.|+++.-....+++...+.+++.+..-. -..+..+|.+++++.+.... --.+..+++.+.+.+.+.++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6666666666666666666666653211 12345567777777655544 34455666666666667777777777
Q ss_pred HHHHHcC
Q 005732 126 LFFYANC 132 (680)
Q Consensus 126 ~~~~~~~ 132 (680)
+....+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666554
No 385
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=66.94 E-value=44 Score=31.21 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..+-.++...++++.|....++.+.++|+++.-..-.|.+|.+.|-+.-|+.-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 334456778999999999999999999999988999999999999999999999887664
No 386
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.79 E-value=1.7e+02 Score=30.67 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=25.0
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHh
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG-RSGHLHEAEEFIKD 559 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 559 (680)
+.+.|-+..|.++.+.+.+....-|+.....+|+.|+ ++.+++-.+++++.
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555555555555444444555555555443 34444444444443
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.98 E-value=25 Score=29.34 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=46.9
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 550 LHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 550 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|++..+-...+.+|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356777777775 23444455566778999999999999999999999888888888887766443
No 388
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=65.96 E-value=1.6e+02 Score=30.02 Aligned_cols=233 Identities=9% Similarity=-0.064 Sum_probs=116.9
Q ss_pred HHHhhcCCChhHHHHhhccCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHH
Q 005732 25 ITECGRNGQLVTARNLFDQMP--IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLID 102 (680)
Q Consensus 25 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~ 102 (680)
|+++...| +.+...+-... .++...+-....++...........+.+.+. .++...-..+..+++..++...
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~~a 118 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGRQA 118 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCchHH
Confidence 66667767 44555443332 2334444444444443333332333333332 2455566777777777776555
Q ss_pred HHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCee
Q 005732 103 GKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVV 182 (680)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 182 (680)
...+...+ + .+++......+.++...+. +....+..-+...+...-..-+.++...+..+..-.+..-...+|..
T Consensus 119 ~~~L~~~L-~---~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~ 193 (410)
T TIGR02270 119 EPWLEPLL-A---ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPE 193 (410)
T ss_pred HHHHHHHh-c---CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHH
Confidence 54444433 2 2244444455555554432 22222233333455555566666666666543333333333456666
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEF 262 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 262 (680)
.-..-+.+....|. +.|...+...... + +......+.......|. +.+...+..+.+. +. +-...+.+
T Consensus 194 VR~aA~~al~~lG~--~~A~~~l~~~~~~---~-g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d---~~--vr~~a~~A 261 (410)
T TIGR02270 194 VRFAALEAGLLAGS--RLAWGVCRRFQVL---E-GGPHRQRLLVLLAVAGG-PDAQAWLRELLQA---AA--TRREALRA 261 (410)
T ss_pred HHHHHHHHHHHcCC--HhHHHHHHHHHhc---c-CccHHHHHHHHHHhCCc-hhHHHHHHHHhcC---hh--hHHHHHHH
Confidence 66666666667666 5666665553321 1 33333333333333333 2444444444433 22 55667777
Q ss_pred hhcCCCHHHHHHHHhhcC
Q 005732 263 YCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~ 280 (680)
+.+.|+...+.-+.+.+.
T Consensus 262 lG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHcCCcchHHHHHHHhc
Confidence 777777777766666665
No 389
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.46 E-value=1.3e+02 Score=28.65 Aligned_cols=115 Identities=9% Similarity=0.050 Sum_probs=72.7
Q ss_pred ChhhHHHHhccCCC-----CCeeeHHHHHHHHHhCCC-ChHHHHHHHHHHHHc-CCCCCCcchHHHHHHHHhccCChhhH
Q 005732 165 LMSDAFDVFIKMPK-----KDVVVWTKLISGYAKSVD-GCEKALKLFRWMRES-GENMPNEYTFDSVIRACARLGAFCEG 237 (680)
Q Consensus 165 ~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~-~~~~a~~~~~~m~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a 237 (680)
-+-+|+.+|+.... .|...-..+++......+ ....--++.+-+... +..+ +..+...++..++..+++..-
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l-~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSL-TRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCC-ChhHHHHHHHHHHhcccHHHH
Confidence 34566666663221 234444455555544211 123333333444332 3343 777888888888888888888
Q ss_pred HHHHHHHHHh-CCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q 005732 238 KVVHGLLIKC-GFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (680)
.++++..... +..-|...|..+|+.....|+..-..++.++-.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 8888877665 556678888888888888888888877776543
No 390
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.02 E-value=2.7e+02 Score=32.21 Aligned_cols=77 Identities=6% Similarity=0.003 Sum_probs=31.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcC-CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhcc
Q 005732 252 DESIGGALIEFYCGCEAFDGAMRVYDRLE-NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVY 328 (680)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 328 (680)
+..+....+..+.+.|..+.+...+.... .++...-...+.++...+..+....+...+.+++...-...+.++.+.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 44444455555555554433322222222 333333333444444444432222222223335555555555555554
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.52 E-value=1e+02 Score=29.06 Aligned_cols=51 Identities=4% Similarity=-0.066 Sum_probs=21.3
Q ss_pred HHHHHhcCChHHHHHH----HhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005732 440 VDMYSRCGSINDAQAS----FSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIM 490 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 490 (680)
|++++..+++.++... |+.-.+-.+.....-|-.|.+.+.+..+.++-..-
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~W 144 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAW 144 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4445555555554332 22222223333333344444555554444444333
No 392
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.16 E-value=64 Score=24.43 Aligned_cols=63 Identities=21% Similarity=0.093 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CchHHHHHHHHHhcCCch-HHHHHHHHH
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP--ISAYVILSNIYAVLGKWG-KKMDIRKRL 626 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 626 (680)
.|......+...+...|++++|.+.+-.+++.+++. ..+-..++.++...|.-+ -+.+..++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 366777888888999999999999999999988764 566778888888777744 344444443
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.03 E-value=74 Score=29.87 Aligned_cols=89 Identities=9% Similarity=0.075 Sum_probs=55.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh--
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-- 445 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 445 (680)
.=|++++..|++.+++.+.-+--+..-+.........|-.|.+.+.+..+.++-..-....-.-+..-|..+++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347889999999999887655543222223344555566677888888777777666654323333346666665543
Q ss_pred ---cCChHHHHHHH
Q 005732 446 ---CGSINDAQASF 456 (680)
Q Consensus 446 ---~g~~~~A~~~~ 456 (680)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666655
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.62 E-value=36 Score=35.31 Aligned_cols=135 Identities=11% Similarity=0.043 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHHHHH
Q 005732 496 VPNAATFVGVLSACVRA--GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL--DAVVWG 570 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~ 570 (680)
-|+..+..+++.-.... ...+.|..++..|. ....|--.+.|.-.-...-.|+...|.+.+... ...| ......
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 35666666655443321 22334444444444 223333333332222233478999999988876 2333 233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.|.....+.|-...|-.++.+.+.+....|-++..+++++....+.+.|++.++...+...
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 6777777888888999999999999888888999999999999999999999999877653
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.85 E-value=61 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=23.3
Q ss_pred cCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHH
Q 005732 265 GCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDA 303 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 303 (680)
..|+.+.|.+++..++ ..+.||..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 5566666666666666654433
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.80 E-value=2e+02 Score=29.73 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=47.9
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHH
Q 005732 359 MERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTS 438 (680)
Q Consensus 359 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (680)
.+.|....-+++..+..+.++.-...+-.+|..-| .+...|..++.+|... ..+.-..+++++.+.. -.|...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHH
Confidence 34444455555555555555555555666665532 4445555566655555 4445555555555544 223333344
Q ss_pred HHHHHHhcCChHHHHHHHhc
Q 005732 439 LVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~ 458 (680)
|+..|-+ ++.+.+...|.+
T Consensus 138 La~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHHHH-hchhhHHHHHHH
Confidence 4444444 444444444443
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.74 E-value=21 Score=22.67 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=12.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.00 E-value=1.4e+02 Score=30.50 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=9.3
Q ss_pred HHHHHcCCChHHHHHHHhh
Q 005732 126 LFFYANCFEIEEAKRVFDE 144 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~ 144 (680)
+...+..|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3344455555555555543
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.45 E-value=28 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHH--HHHHHcCCC
Q 005732 571 ALLSACWFWMNMEVGERA--AQKMFGLDK 597 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~--~~~~~~~~p 597 (680)
.+...+...|++++|+++ ++-+..++|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 334444455555555555 224444443
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.22 E-value=58 Score=26.61 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcC--CCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 584 VGERAAQKMFGL--DKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 584 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
.+..+|+.+.+. +-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777664 444566688888888888888888888765
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=59.80 E-value=2e+02 Score=29.01 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=97.0
Q ss_pred cCChHHHHHHHhcCCC----CCHHHHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 005732 446 CGSINDAQASFSSISS----PNVAAWTALMNGY-SHHGLGSEAVLLFEIMLEQDIVPNA----ATFVGVLSACVRAGLVN 516 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~ 516 (680)
.|+.++|.+.+..+.. +....+-.|+.+- ....++.+|+++|+...- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888764 4455666666653 455678899999998876 34542 23333444557788888
Q ss_pred HHHHHHHHHH-hcCCCCChhHHH-HHHHHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMK-SYGVVPTLEHYT-CVVDLLGR---SGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~-~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
++..+-.... .....|-..-|. .+..++.+ ....+.-..++..|.-.-....|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8777665555 333334333332 23333333 334455556666664233466787778888889999999999999
Q ss_pred HHcCCCC
Q 005732 592 MFGLDKK 598 (680)
Q Consensus 592 ~~~~~p~ 598 (680)
+..+...
T Consensus 283 A~~L~~~ 289 (421)
T PRK12798 283 ALKLADP 289 (421)
T ss_pred HHHhccC
Confidence 9887643
No 402
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.46 E-value=80 Score=26.45 Aligned_cols=82 Identities=9% Similarity=0.156 Sum_probs=66.1
Q ss_pred chhhHHHHHhhcCCChhHHHHhhccCCC---------CChhhHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHhhHH
Q 005732 19 VSTNKAITECGRNGQLVTARNLFDQMPI---------RTVVSWNTMLCGYSKWAK-FDESLSLVSTMHRSNVKLNETTFS 88 (680)
Q Consensus 19 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~t~~ 88 (680)
...|.++.-.+..+++.....+++.+.. .+-..|++++.+.+.... ---+..+|..|.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467888888888899998888887742 356689999999977766 556788999999888999999999
Q ss_pred HHHHHHhccCCh
Q 005732 89 TILSVCAQLNSL 100 (680)
Q Consensus 89 ~ll~~~~~~~~~ 100 (680)
.+|.+|.+....
T Consensus 120 ~li~~~l~g~~~ 131 (145)
T PF13762_consen 120 CLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCC
Confidence 999998875443
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.10 E-value=56 Score=32.86 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH-------H-cCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 572 LLSACWFWMNMEVGERAAQKM-------F-GLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~-------~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
|++..+-.||+..|+++++.+ . +..+-...+++.+|.+|.-.+|+.+|.+.|....
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455665555555432 1 1112234556777777777777777777776654
No 404
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=57.81 E-value=3.4e+02 Score=31.15 Aligned_cols=379 Identities=11% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCC--C
Q 005732 57 CGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCF--E 134 (680)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 134 (680)
+++...+.++.|+..|.++..+ .+--...|.+..++ ...++++..+.| + .
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~------------------~~~~ 534 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRL---------GITLLEKASEQG------------------DPRD 534 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHh---------hHHHHHHHHhcC------------------ChHH
Q ss_pred hHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCC
Q 005732 135 IEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGEN 214 (680)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (680)
+++|+.-|+.+.........-|.++++-+..-+ -...+.+|...+.-|.+...-..--..+.-+|.+.-..
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (932)
T PRK13184 535 FTQALSEFSYLHGGVGAPLEYLGKALVYQRLGE---------YNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK 605 (932)
T ss_pred HHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhh---------HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH
Q ss_pred CCCcchHHHHHHHHh---ccCChhhHHHHHHHHHHh-------CCCCCchHHHHH-HHHhhc--CCCHHHHHHHHhhcC-
Q 005732 215 MPNEYTFDSVIRACA---RLGAFCEGKVVHGLLIKC-------GFEFDESIGGAL-IEFYCG--CEAFDGAMRVYDRLE- 280 (680)
Q Consensus 215 ~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l-i~~~~~--~g~~~~A~~~~~~~~- 280 (680)
- ...+|.-++-+.. ..-...+-+++++.+..+ .+.+.+.++.+= +..+.. .|..---.++|++..
T Consensus 606 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (932)
T PRK13184 606 H-RREALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWD 684 (932)
T ss_pred H-HHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhh
Q ss_pred CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----------------CChhHHHHHHHHHhccCChhhHHHHHhhcCcC
Q 005732 281 NPCLNASNSLINGLISMGRIEDAELIFNRLTE----------------ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHR 344 (680)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 344 (680)
.++...........+..|.++-+.+....+.+ .+...|..-+.++....+.+++.+.+......
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (932)
T PRK13184 685 LRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPT 764 (932)
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHH
Q ss_pred CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHH
Q 005732 345 SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
.+ ...+..++.-..-.++.+....+.+.+...-..... ......+.+|.-..++++|..++.
T Consensus 765 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (932)
T PRK13184 765 LI----------------LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLN 828 (932)
T ss_pred HH----------------HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHH
Q ss_pred HHHhc-CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005732 423 HLVKT-PFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEI 489 (680)
Q Consensus 423 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 489 (680)
..-.. ........+-.....++-.++-+.|...|....++-...-......+...|..++...++++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 829 RYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPRSLDGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred hCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcchhhccccchhccccccccHHHH
No 405
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.75 E-value=1.4e+02 Score=26.53 Aligned_cols=89 Identities=17% Similarity=0.091 Sum_probs=41.1
Q ss_pred HHhcccCChHHHHHHHHHHHhcCCCch--HhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCChh
Q 005732 406 HACSCLGSLQQGQLLHAHLVKTPFESN--VYVGTSLVDMYSRCGSINDAQASFSSISSPNVAA--WTALMNGYSHHGLGS 481 (680)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 481 (680)
..+...+++++|...++.........+ ...--.|.......|.+++|...++....++-.. ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 344455666666666655543311111 1111223344445555555555555555443222 222333455555555
Q ss_pred HHHHHHHHHHHCC
Q 005732 482 EAVLLFEIMLEQD 494 (680)
Q Consensus 482 ~A~~~~~~m~~~~ 494 (680)
+|..-|++..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 5555555555543
No 406
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.92 E-value=2e+02 Score=28.20 Aligned_cols=82 Identities=9% Similarity=-0.020 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHhCCC------------hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc
Q 005732 360 ERNPVTWNSMISGYVQNNL------------HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT 427 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~------------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 427 (680)
|.|+.+|-.++..--..-. .+.-+.+|++..+.+ +-+.......+..+.+..+.+...+-++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6778888887764332211 345566777776663 234445666677777777777777777777766
Q ss_pred CCCchHhHHHHHHHHH
Q 005732 428 PFESNVYVGTSLVDMY 443 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~ 443 (680)
. +.+...|...+...
T Consensus 95 ~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 95 N-PGSPELWREYLDFR 109 (321)
T ss_pred C-CCChHHHHHHHHHH
Confidence 4 44566666555543
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.90 E-value=41 Score=29.97 Aligned_cols=38 Identities=13% Similarity=-0.066 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 561 PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 561 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
...|++.++..++.++...|+.++|.+..+++..+.|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 46788999988888888999999999999999988883
No 408
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.80 E-value=1.3e+02 Score=27.64 Aligned_cols=106 Identities=21% Similarity=0.141 Sum_probs=59.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIV-PNAA--TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~-p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
...|+++.|+++.+.++++|.. |+.+ ++-+++. ++.........+.|...++.....+...-...
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~---- 161 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDLTTEW---- 161 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC----
Confidence 5789999999999999998854 3321 2222221 22233333334555555554433322221111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHcCCCCC
Q 005732 552 EAEEFIKDMPIELDAVVWGALLSACW---------FWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 552 ~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.|+-+.....|...+..+. ..++...|..+++++++++|+-
T Consensus 162 -------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 162 -------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred -------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 1222223444555555552 3467789999999999999885
No 409
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.35 E-value=2.4e+02 Score=28.85 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=8.2
Q ss_pred HHhhcCCCHHHHHHHHh
Q 005732 261 EFYCGCEAFDGAMRVYD 277 (680)
Q Consensus 261 ~~~~~~g~~~~A~~~~~ 277 (680)
...+..|+.+.+..+++
T Consensus 73 ~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 73 HDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 33444555555554444
No 410
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.34 E-value=30 Score=25.18 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=19.5
Q ss_pred HcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHH
Q 005732 476 HHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMK 520 (680)
Q Consensus 476 ~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~ 520 (680)
...+.++|+..|....+.-..|. -.++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544322221 1234444444555554444443
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.29 E-value=81 Score=23.59 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=21.0
Q ss_pred cCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhH
Q 005732 131 NCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDA 169 (680)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 169 (680)
..|+.+.|.+++..+. +++..|..++.++-+.|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666665 5555555555555555544333
No 412
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.70 E-value=3.5e+02 Score=30.28 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=33.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHH--HHHHhcccCChHHHHHHHHH
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRT----RSTFSV--LFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~--ll~~~~~~~~~~~a~~~~~~ 423 (680)
.|+......|+.++|...++++......++ -.+-.. -+......|+.+.+.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 577788889999999999988876443332 111111 12223355666666555444
No 413
>PRK10941 hypothetical protein; Provisional
Probab=54.64 E-value=83 Score=29.79 Aligned_cols=64 Identities=6% Similarity=-0.172 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.+-.+|.+.++++.|+++.+.+ ...| ++.-+.--+..|.+.|.+..|..-++..++.-|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3445667777777777777766 3444 45555556666777788888888888887777777544
No 414
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.56 E-value=3.2e+02 Score=29.51 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 397 TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+...+..+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIA 461 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHH
Confidence 334445555555555555555555554443321 1122344444455555554444433
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.49 E-value=74 Score=25.70 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.+-+.....-.+.|++......+++|.+.+|+..|..+|+-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555556678888888888888888888888888888887
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.22 E-value=3.7e+02 Score=30.11 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=118.5
Q ss_pred HhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC---hhHHHHHHH-HHHhCCChHHHHHHHHHHHHCC----CCC
Q 005732 325 YAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN---PVTWNSMIS-GYVQNNLHEKALQLYMTMRKLA----IDR 396 (680)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~----~~p 396 (680)
.....++++|..++.++...-... ...+. ...++.+-. .....|++++|.++-+.....= ..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~---------~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAP---------MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcC---------cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 345678888888877655421000 00111 123444433 3445789999999888876531 223
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHH---HHH--HHHHHhcCCh--HHHHHHHhcCCC--------
Q 005732 397 TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVG---TSL--VDMYSRCGSI--NDAQASFSSISS-------- 461 (680)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~--~~A~~~~~~~~~-------- 461 (680)
....+..+..+..-.|++++|..+..+..+..-..+...+ ..+ ...+...|+. .+....|+....
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4445666677777789999999888877765222333322 222 2234456632 222333332221
Q ss_pred --CCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHhcCCCC----
Q 005732 462 --PNVAAWTALMNGYSHHG-LGSEAVLLFEIMLEQDIVPNAATFV--GVLSACVRAGLVNEGMKIFRSMKSYGVVP---- 532 (680)
Q Consensus 462 --~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---- 532 (680)
+-...+..+..++.+.. ...++..-+.--......|-...+. .|+......|+.++|...+.++......+
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 12234444555554421 1122222222222222223223333 56777788999999999999888433333
Q ss_pred ChhHHHHHHHH--HHhcCChHHHHHHHHhC
Q 005732 533 TLEHYTCVVDL--LGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 533 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 560 (680)
+-..-...+.. -...|+.+.|.....+-
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 22222222222 23578888887776663
No 417
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.33 E-value=3.4e+02 Score=29.16 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=42.5
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVL 404 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 404 (680)
.+...|.++|....+.|. ...+-.+..+|.. ..+...|..++++..+.| .|...--...
T Consensus 342 ~d~~~A~~yy~~Aa~~G~----------------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~ 404 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKAGH----------------ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGA 404 (552)
T ss_pred ccHHHHHHHHHHHHHcCC----------------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHH
Confidence 456677777777777662 2222222222221 235667777777777766 3332222223
Q ss_pred HHHhcccCChHHHHHHHHHHHhcC
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
+..+.. +..+.+...+..+.+.|
T Consensus 405 ~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 405 FYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHcc-ccccHHHHHHHHHHHhh
Confidence 333333 55555555555555544
No 418
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.59 E-value=29 Score=32.68 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=18.7
Q ss_pred CCCChhHHHHHHHHHHHHhhhc
Q 005732 655 NNPNCNVIYATLEHLTANLNSV 676 (680)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~ 676 (680)
-.|..+.+...++.+.+|||+-
T Consensus 330 iPp~P~dv~~qmq~fv~WLNsE 351 (472)
T KOG3824|consen 330 IPPSPEDVMEQMQDFVDWLNSE 351 (472)
T ss_pred CCCChHHHHHHHHHHHHHhccc
Confidence 4677888999999999999974
No 419
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.74 E-value=92 Score=24.96 Aligned_cols=58 Identities=10% Similarity=-0.041 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-------cCCCCCCch----HHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 570 GALLSACWFWMNMEVGERAAQKMF-------GLDKKPISA----YVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
..|..++...|++++++...++++ ++..+.... ....+.++...|+.++|...|+..-
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 334444445555555444433333 344443222 3455667778888888888887643
No 420
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.15 E-value=2.9e+02 Score=27.71 Aligned_cols=63 Identities=5% Similarity=-0.121 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDMPIELD------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
..|.|++.|...+.++.|.++..+...+-+ ...+..++..-..++++..|.+.+-.++...|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 345555556666666666666666531111 111122222333456666666666666665554
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.74 E-value=2.4e+02 Score=26.64 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=42.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
..++.....+...|.+.|++.+|+..|-....++...+..++......|...++ +...-. .+-.|
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~y 151 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQY 151 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHH
Confidence 356778888888999999998888877544433333332222222222222211 111122 22235
Q ss_pred hccCCHHHHHHHHHHHHh
Q 005732 510 VRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~ 527 (680)
...++...|...+....+
T Consensus 152 L~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHTTBHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 566777777777766653
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.60 E-value=1.4e+02 Score=23.49 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005732 414 LQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ 493 (680)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 493 (680)
.++|..+.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|.. .+.|-.+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555666655555542 122222222334556677777744444444566666655532 4566666666666655544
Q ss_pred C
Q 005732 494 D 494 (680)
Q Consensus 494 ~ 494 (680)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 423
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.51 E-value=75 Score=30.68 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=54.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhC---CCCCCHhhHHH--HHHHHhccCChHHHHHHHHHHHH-----hCCCCcchh-h
Q 005732 54 TMLCGYSKWAKFDESLSLVSTMHRS---NVKLNETTFST--ILSVCAQLNSLIDGKQIHCLVLK-----SGYECFEFV-G 122 (680)
Q Consensus 54 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~-~ 122 (680)
.++...-+.++.++|++.++++.+. --.|+...|.. ..+.+...||...++++++...+ .|++|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444455556888888888888653 23456655543 34445567888888888888877 567774433 4
Q ss_pred hhHHHHH-HcCCChHHHHHH
Q 005732 123 SGLLFFY-ANCFEIEEAKRV 141 (680)
Q Consensus 123 ~~l~~~~-~~~g~~~~a~~~ 141 (680)
..+-+-| -..|++....+.
T Consensus 160 Y~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 4444444 444776665443
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.39 E-value=70 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
+.......|+.++|...+++++++-.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44455678899999999888877543
No 425
>PRK12798 chemotaxis protein; Reviewed
Probab=46.73 E-value=3.2e+02 Score=27.59 Aligned_cols=189 Identities=12% Similarity=0.086 Sum_probs=117.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNG--YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC-VRAGLV 515 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~ 515 (680)
.+-....-|+++....++..-..++... .++.+ -.-.|+.+++.+.+..+......+...-+..|+.+- ....++
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d~--~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFDQ--RLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhhH--HHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 3334445677777777776655433321 12222 134789999999999888766666777777777654 567789
Q ss_pred HHHHHHHHHHHh--cCCCCChhHHHHHHHHHHhcCChHHHHHH----HHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 005732 516 NEGMKIFRSMKS--YGVVPTLEHYTCVVDLLGRSGHLHEAEEF----IKDMPIELDAVVW-GALLSACWFWMNMEVGERA 588 (680)
Q Consensus 516 ~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~ 588 (680)
..|+++|+...- -|--........-+......|+.+++..+ +.+....|=..-| .-+..+..+.++-..-..
T Consensus 165 ~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~- 243 (421)
T PRK12798 165 ATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR- 243 (421)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-
Confidence 999999998873 22222233444555667788999886654 5555444433333 333334444443333333
Q ss_pred HHHHHc-CCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 589 AQKMFG-LDKKP-ISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 589 ~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+..++. ++|+. ...|..+++.-.-.|+.+-|.-.-++.+...
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 444444 45553 4568888888889999999888888877643
No 426
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.28 E-value=1.1e+02 Score=32.64 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=24.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCH
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQD--IVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~ 515 (680)
.|+.+|...|++..+.++++.+...+ -+-=...|+..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45566666666666666666655432 111133455555555555543
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.26 E-value=20 Score=34.38 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=53.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005732 511 RAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERA 588 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 588 (680)
..|.+++|++.|....... ++....|..-..++.+.++...|++=+... .+.|| ..-|-.-..+-...|++++|.+.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455555555555555432 223333333344555556666665555443 34443 22232233344456777777777
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005732 589 AQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
++.+.+++-+. .+-..+-.+.-..+..++-.+.+
T Consensus 205 l~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~ 238 (377)
T KOG1308|consen 205 LALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKY 238 (377)
T ss_pred HHHHHhccccH-HHHHHHHHhccchhhhhhchhHH
Confidence 77777766554 23333333433344433333333
No 428
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.25 E-value=4.9e+02 Score=29.54 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..|...+-++.+.|+.++|+.++-....
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 5577778888889999999888766554
No 429
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.17 E-value=35 Score=30.84 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+.++.+.|.+++.+. ...| ....|.-+...-.+.|+++.|.+.|++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666666666655 3333 45556666666666777777777777777777664
No 430
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.12 E-value=2.4e+02 Score=25.90 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=44.6
Q ss_pred cccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHh----------------cCCCCCHHHHHHHHH
Q 005732 409 SCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFS----------------SISSPNVAAWTALMN 472 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------------~~~~~~~~~~~~l~~ 472 (680)
.+..+..--.++.+-....+++.+.....+++ +...|+...|...++ -..+|.+.....++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 33333333333444333444444443333332 344555555554443 233466666666665
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
.+. .+++++|.+++.++.+.|+.|..
T Consensus 248 ~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 248 ACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 543 34577777777777777766543
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.84 E-value=1.2e+02 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=15.2
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005732 542 DLLGRSGHLHEAEEFIKDMPIELDAVVW 569 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 569 (680)
-.|.+.|.+++|.+++++.-..|+....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 3456666666666666665324443333
No 432
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.66 E-value=1.7e+02 Score=26.98 Aligned_cols=55 Identities=4% Similarity=-0.142 Sum_probs=34.9
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
.++...|++-++++...++.... +.|+.+|..-..+.+..-+..+|..=|....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~--------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHH--------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcC--------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34445566666666666666655 56666676666666666666777666666655
No 433
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.55 E-value=1.5e+02 Score=23.31 Aligned_cols=73 Identities=15% Similarity=-0.022 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhc
Q 005732 99 SLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFI 174 (680)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 174 (680)
..++|..+.+.+...+- ....+.-..+..+.+.|++++|+..=.....||...|..+.. .+.|--+.+...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45666666666555542 122222233444555566666633333333334443333322 23344444444444
No 434
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.41 E-value=2.1e+02 Score=26.08 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=9.3
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~ 526 (680)
.....|+.++|++....+.
T Consensus 73 ~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHhccHHHHHHHHHHhC
Confidence 3344555555555554444
No 435
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.36 E-value=50 Score=31.35 Aligned_cols=79 Identities=6% Similarity=0.042 Sum_probs=52.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHH
Q 005732 530 VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGA-LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVIL 606 (680)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 606 (680)
..-|+..|...+....+.|.+.+.-.++.+. ...| |+..|.. -..-+...++++.+..++.+.+..+|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445666666665555666666666666665 3334 5555532 22234568999999999999999999999887765
Q ss_pred HH
Q 005732 607 SN 608 (680)
Q Consensus 607 ~~ 608 (680)
.+
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 54
No 436
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.67 E-value=1.3e+02 Score=24.33 Aligned_cols=46 Identities=4% Similarity=0.075 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc
Q 005732 382 ALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT 427 (680)
Q Consensus 382 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 427 (680)
..+-++.+..-++.|++......+++|.+.+++..|..+++.++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455555566777777777777777777777777777666543
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.81 E-value=2.5e+02 Score=25.95 Aligned_cols=59 Identities=5% Similarity=-0.087 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005732 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMR 390 (680)
Q Consensus 318 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 390 (680)
|..-+..+.+..+++.+..--.+.++.. +..+.....+..++.....++.|+..+.+..
T Consensus 47 ~tnralchlk~~~~~~v~~dcrralql~--------------~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 47 YTNRALCHLKLKHWEPVEEDCRRALQLD--------------PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHhcC--------------hHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3344445555555555555554444432 2223334445556666667777777776653
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.57 E-value=1.1e+02 Score=32.39 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
....+..+|....+.+.|.++++++-+.+|.++-.-.....+....|+-++|+..+-.....-
T Consensus 396 ~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 396 IQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 344555556667777778888888777777776666666777777777777777776666543
No 439
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.31 E-value=1.4e+02 Score=22.32 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q 005732 239 VVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (680)
++|+.....|+..|..+|..+++...-+=..+...++++.+.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666555555555555555543
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.16 E-value=83 Score=20.36 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=19.3
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 005732 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILS 92 (680)
Q Consensus 61 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~ 92 (680)
+.|-..++..++++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555566666666666666666666555544
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.98 E-value=55 Score=22.65 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.--..++.++...|++++|.++++.+.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333445555666666666666555554
No 442
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.79 E-value=1.7e+02 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCC--CCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005732 585 GERAAQKMFGLD--KKPISAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 585 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
...+|..+.+.+ -..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666544 3345567788888888999999988875
No 443
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.18 E-value=3.9e+02 Score=28.12 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--CCHH---HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 437 TSLVDMYSRCGSINDAQASFSSISS--PNVA---AWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
..++.-|.+.+++++|..++..|.= .... +.+.+++.+.+..--.+.+..++.+.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4566678888888888888887761 1222 233344444444433444444444443
No 444
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.60 E-value=2e+02 Score=30.74 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChH------HHHHHHHHHHHCC
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHE------KALQLYMTMRKLA 393 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~------~A~~~~~~m~~~~ 393 (680)
++..+|...|++-.+.++++.....+-. .+.-...||..|..+.+.|.++ .|.+.+++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~-----------~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--- 98 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG-----------DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--- 98 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC-----------CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---
Confidence 7788888888888888888877664310 1333557888888889988764 3444444433
Q ss_pred CCCChhhHHHHHHHhcccC
Q 005732 394 IDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 394 ~~p~~~~~~~ll~~~~~~~ 412 (680)
+.-|..||..++.+..+.-
T Consensus 99 ln~d~~t~all~~~sln~t 117 (1117)
T COG5108 99 LNGDSLTYALLCQASLNPT 117 (1117)
T ss_pred cCCcchHHHHHHHhhcChH
Confidence 6678889988887766543
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.52 E-value=82 Score=20.39 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=18.5
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALI 260 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (680)
.+.|-+.++..+++.|.+.|+-.+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666655555555444
No 446
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.46 E-value=1.1e+02 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.|+...|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.25 E-value=1.3e+02 Score=25.26 Aligned_cols=62 Identities=6% Similarity=0.074 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCC
Q 005732 71 LVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCF 133 (680)
Q Consensus 71 ~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (680)
+.+.+.+.|+++++.-. .++..+...++.-.|.++++.+.+.+++-+..|--.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455566665554322 344555556666777777777777766555444444444444443
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.62 E-value=2.1e+02 Score=23.35 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
.+.++|..|...|+--. ..-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555443332 3334444444444455555554444
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.60 E-value=2.4e+02 Score=25.21 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch-HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCe
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA-YVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSR 645 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (680)
.....++..|...||++.|-++|--++...+-+... |..=+.++.+.+.-....+.++.|...-.....-.....-...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 345667777778888888888888888776655444 3333556777766666557777665432211111110111113
Q ss_pred EEEEecCCCCCCCh
Q 005732 646 VHAFSVEDRNNPNC 659 (680)
Q Consensus 646 ~~~~~~~~~~~~~~ 659 (680)
-..|.+|-..|...
T Consensus 122 ~pvfrsGs~t~tp~ 135 (199)
T PF04090_consen 122 APVFRSGSRTHTPL 135 (199)
T ss_pred cccccCCCcccchH
Confidence 36676666666443
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.88 E-value=63 Score=30.76 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=32.3
Q ss_pred CChh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 361 RNPV-TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 361 ~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
++.. -|+..|..-.+.||+++|+.++++.++.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3444 46789999999999999999999999988755444443
No 451
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=38.07 E-value=6.2e+02 Score=28.34 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCC--HHHHHHHHH-HHHhc---C----CHHHHHHHHHHHHcCCCCCCc-----hHH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMPIELD--AVVWGALLS-ACWFW---M----NMEVGERAAQKMFGLDKKPIS-----AYV 604 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~-~~~~~---g----~~~~a~~~~~~~~~~~p~~~~-----~~~ 604 (680)
..+-+...|++++|+.++...+ .+| ..+.+.++. +.... + +...-...+..+.+.+|..+. ++.
T Consensus 628 vA~~a~~~G~~~~sI~LY~lag-~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~ 706 (835)
T KOG2168|consen 628 VASEADEDGLFEDAILLYHLAG-DYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLS 706 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHH
Confidence 3444556788888888887776 232 222333332 11111 1 222222334444555555433 233
Q ss_pred HHHHH-----HHhcCCchHHHHHHHHHhh
Q 005732 605 ILSNI-----YAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 605 ~l~~~-----~~~~g~~~~A~~~~~~~~~ 628 (680)
.|..+ ++..|+|++|.+.++.+.-
T Consensus 707 lLl~~~~~f~~y~~~~~e~aL~~le~l~L 735 (835)
T KOG2168|consen 707 LLLDLVSFFDLYHNGEWEEALSILEHLDL 735 (835)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33332 4578999999999988764
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.59 E-value=3.4e+02 Score=25.18 Aligned_cols=163 Identities=12% Similarity=0.022 Sum_probs=84.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV-RAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
.++..+-+.++++++...++++...+...+..-.+.|-.+|- ..|....+++++..+....-.-.......++..|.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k 85 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHH
Confidence 355667788899999999999998766666655555555552 2344455666666655211111112222333333221
Q ss_pred ------CChHHHHHHHHhC--C--CCCCHHHHHHHHHH-HH----h--cC-----CHHHHHHHHHHHHc-----CCCCCC
Q 005732 548 ------GHLHEAEEFIKDM--P--IELDAVVWGALLSA-CW----F--WM-----NMEVGERAAQKMFG-----LDKKPI 600 (680)
Q Consensus 548 ------g~~~~A~~~~~~~--~--~~p~~~~~~~l~~~-~~----~--~g-----~~~~a~~~~~~~~~-----~~p~~~ 600 (680)
.-..+.+.+++.. + ..+...+|..-+.+ |. . .| -.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1223455555553 1 12223333222221 11 1 12 24677777777755 566664
Q ss_pred ch----HHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 601 SA----YVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 601 ~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.- ++.-+..|...|+.++|.++.++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 32 22223345668999999999988877554
No 453
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.41 E-value=2.1e+02 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666777777777777777776665
No 454
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.40 E-value=7.1e+02 Score=28.84 Aligned_cols=255 Identities=9% Similarity=-0.000 Sum_probs=140.6
Q ss_pred HHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHH
Q 005732 305 LIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQ 384 (680)
Q Consensus 305 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 384 (680)
.+...+.++|..+-...+..+.+.+..+ +...+..+.+. ++...-...+.++.+.+.......
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D----------------~d~~VR~~Aa~aL~~l~~~~~~~~ 687 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD----------------GAAAVRRAAAEGLRELVEVLPPAP 687 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC----------------CCHHHHHHHHHHHHHHHhccCchH
Confidence 4444455577777777777777777644 33333344332 223333334444433322111122
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCH
Q 005732 385 LYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNV 464 (680)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (680)
.+..+... +|...-...+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+ .+...+..++.
T Consensus 688 ~L~~~L~~---~d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~ 756 (897)
T PRK13800 688 ALRDHLGS---PDPVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENR 756 (897)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCH
Confidence 33333332 45544444555554432211 112222 222 455555566666666655443 23344556777
Q ss_pred HHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSE-AVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
..-...+.++...+..+. +...+..+.. .+|...-...+.++...|....+...+..+.+ .++..+-...+.+
T Consensus 757 ~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~a 830 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHH
Confidence 777777777777765443 3455555554 45677777788888888876655444444443 2344455556677
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 544 LGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+.+.+. +++...+..+-..|+..+-...+.++...+.-..+...+.++++
T Consensus 831 L~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 777765 44555555554477888888888888776445567777777776
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.32 E-value=4.6e+02 Score=29.45 Aligned_cols=176 Identities=10% Similarity=0.060 Sum_probs=108.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHH
Q 005732 376 NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQAS 455 (680)
Q Consensus 376 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (680)
..++++.+.+.+...--| ..+|..+.+.|-++-|..+.+. ..+- ......+|+++.|.+.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHH
Confidence 345666665544332211 1234444556666655554332 2111 2335578999999887
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh
Q 005732 456 FSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE 535 (680)
Q Consensus 456 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (680)
-.++. +..+|..|.......|+.+-|+-.|++... |..|--.|.-.|+.++..++.+.+..++ |..
T Consensus 666 akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~ 731 (1202)
T KOG0292|consen 666 AKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DAT 731 (1202)
T ss_pred HHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhH
Confidence 76664 556899999999999999999988887654 2233334666788888777766665322 221
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
. ......-.|+.++=.++++..+..|-. |. ....+|.-++|.++.++.-.
T Consensus 732 ~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 732 G---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred H---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 1 112223468899999999988754421 11 12357888999998888766
No 456
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.18 E-value=58 Score=33.07 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=52.8
Q ss_pred HHHhcCCHHHHHHHHHHhcc--CChh-HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHH
Q 005732 293 GLISMGRIEDAELIFNRLTE--ANSI-SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSM 369 (680)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 369 (680)
.+...+.++.|..++.+..+ ||.. .|..-..++.+.+++..|..=+.++.+.+ +.....|-.-
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------------P~~~K~Y~rr 78 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------------PTYIKAYVRR 78 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------------chhhheeeec
Confidence 33444556666666666555 3322 23333355666666666666655555544 2333344444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 005732 370 ISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAC 408 (680)
Q Consensus 370 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 408 (680)
..++.+.+++.+|+..|+.... +.|+..-+...+.-|
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 4455555566666666665544 556666555555444
No 457
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=3.7e+02 Score=25.49 Aligned_cols=119 Identities=15% Similarity=0.117 Sum_probs=65.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHhcccCChHHHHHHHHHHHh----cCCCchHhHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTRST-------FSVLFHACSCLGSLQQGQLLHAHLVK----TPFESNVYVGT 437 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 437 (680)
+..-..+.+++++|+..+.+....|+..+..+ ...+...|...|+...-.+......+ -.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556778899999999999999988766553 44566666777766554444332221 12233344455
Q ss_pred HHHHHHHhc-CChHHHHHHHhcCCC----CC-----HHHHHHHHHHHHHcCChhHHHHHH
Q 005732 438 SLVDMYSRC-GSINDAQASFSSISS----PN-----VAAWTALMNGYSHHGLGSEAVLLF 487 (680)
Q Consensus 438 ~l~~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~A~~~~ 487 (680)
+|+..+... ..++..+++.....+ .. ...=..++..+.+.|.+.+|+.+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 555555432 334444444443332 11 111123555666666776666544
No 458
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.65 E-value=1.9e+02 Score=24.35 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=35.1
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcC
Q 005732 204 LFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGC 266 (680)
Q Consensus 204 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (680)
+.+.+++.|.++ + .--..++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...
T Consensus 8 ~~~~lk~~glr~-T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 8 AIERLKEAGLRL-T-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHcCCCc-C-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 344555666653 2 234456666666666677777777777776555554433334444333
No 459
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=36.61 E-value=2.2e+02 Score=22.63 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
+.+.+.+...+.|..+..+..++.-+...--|+++.+-.++-
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRG 104 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455677778888887666777776666555666666555543
No 460
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.63 E-value=62 Score=24.10 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=19.1
Q ss_pred cCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCC
Q 005732 131 NCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNL 165 (680)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (680)
..-+.+.+.++++.++.+++..|..+..++-..|.
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 33445556666666655555555555555554443
No 461
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.76 E-value=53 Score=26.86 Aligned_cols=32 Identities=6% Similarity=0.217 Sum_probs=23.3
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005732 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC 94 (680)
Q Consensus 61 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~ 94 (680)
.-|.-.+|-.+|..|.+.|-+||. ++.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345667888899999999888875 55665543
No 462
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=34.57 E-value=3.4e+02 Score=26.53 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=28.4
Q ss_pred HHHcCChhHHHHHHHHHHHC--CCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQ--DIVPNAA-------TFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~--~~~p~~~-------~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
....++.+++..++...... |...+.. +...+...+.+.|+.++-..+....+
T Consensus 14 ~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R 75 (411)
T KOG1463|consen 14 LVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR 75 (411)
T ss_pred hcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 34455667777777777652 3333322 33444555566666665555554443
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.40 E-value=5e+02 Score=26.22 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=38.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHhc--ccCChHHHHHHHHHHHhc
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRS--TFSVLFHACS--CLGSLQQGQLLHAHLVKT 427 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 427 (680)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 555554 3444445554 345667788888776654
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.93 E-value=1.5e+02 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
..+..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 345578999999999999999998 77775543344433
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.86 E-value=1.6e+02 Score=27.45 Aligned_cols=52 Identities=6% Similarity=-0.038 Sum_probs=23.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
.-|...|++++|..+++.+......+ ......+..++.+.|+.++...+.=+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33444555555555555543322211 12233444455555555555554433
No 466
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=33.74 E-value=5.7e+02 Score=26.64 Aligned_cols=451 Identities=8% Similarity=-0.017 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhh
Q 005732 65 FDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDE 144 (680)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 144 (680)
..+...+|.....+ ...|...|..-+..|.+.+.+.....++..|+...+..-.---.+--.-|-...+.+.|..+|..
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Q ss_pred hcC---CchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchH
Q 005732 145 LHE---DNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTF 221 (680)
Q Consensus 145 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 221 (680)
-.. .++..|....+.-...-.--.+.+-.-.....+. ..=...|. .+........=...+..+ ...
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~eie~ge-~~~~~~~~s~~~~~~~~k-~~e-- 234 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEEIERGE-LAWINYANSVDIIKGAVK-SVE-- 234 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHHHHHHH-HHHHhhccchhhhhcchh-hcc--
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHH
Q 005732 222 DSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIE 301 (680)
Q Consensus 222 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (680)
...........+..+-.......+.+.++.++. +.|.+.++-....+...+.....+..-.-+.+
T Consensus 235 ---~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~------------~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s 299 (568)
T KOG2396|consen 235 ---LSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWD------------DLAQRELEILSQTDLQHTDNQAKAVEVGSKES 299 (568)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhccCCCCCccHH------------HHHHHHHHHHHHhhccchhhhhhchhcchhHH
Q ss_pred HHHHHHHHhcc--CChhHHHHHHHHHh------ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHH
Q 005732 302 DAELIFNRLTE--ANSISYNSMIKGYA------VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY 373 (680)
Q Consensus 302 ~a~~~~~~~~~--~~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~ 373 (680)
....+|++... ++...|+..|..|. +.........+++.....+ ......+......+
T Consensus 300 ~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~--------------~l~~~~~~~ys~~~ 365 (568)
T KOG2396|consen 300 RCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELK--------------LLSECLYKQYSVLL 365 (568)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc--------------ccccchHHHHHHHH
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc--CChHHHHHHHHHHHhcCCCchHhHHHHHH-HHHHhcCChH
Q 005732 374 VQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCL--GSLQQGQLLHAHLVKTPFESNVYVGTSLV-DMYSRCGSIN 450 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~ 450 (680)
........+.+.-..+...++.-+...+..-+....+. .---.-...+..+...-..+....+++.. ..+......+
T Consensus 366 l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~ 445 (568)
T KOG2396|consen 366 LCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLD 445 (568)
T ss_pred HHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHH
Q ss_pred HHHHHHhcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHH
Q 005732 451 DAQASFSSISSPNVAAWTA-LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS---ACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~g~~~~A~~~~~~~~ 526 (680)
.....+..+..++..++.. .+.-+.+.|-...|...+..+... ..|+...|..++. .....| ..-+.++++.+.
T Consensus 446 ~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHH
Q ss_pred -hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 527 -SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 527 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
..| .|+..|-..+..=...|..+.+-.++.++
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.61 E-value=71 Score=30.44 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=22.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHH
Q 005732 51 SWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFS 88 (680)
Q Consensus 51 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~ 88 (680)
-|+..|..-.+.|++++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34566666666666666666666666666544444443
No 468
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.56 E-value=5.6e+02 Score=26.54 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=95.4
Q ss_pred HHHcCChhHHHHHHHHHHHC-CCCCC--H-----HHHHHHHH-HHhccCCHHHHHHHHHHHHhcCCCCChhH--HHHHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQ-DIVPN--A-----ATFVGVLS-ACVRAGLVNEGMKIFRSMKSYGVVPTLEH--YTCVVD 542 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~-~~~p~--~-----~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~ 542 (680)
-.-.|++.+|++-...|.+- .-.|. . .....++. -|..-|.++.|..-|....+.--.-|... -..+.-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 34579999999988888762 11233 1 11223333 34567889999988888775433333322 234566
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHH------HH--HHHH--HHhcCCHHHHHHHHHHHHcCCCCC------CchHHHH
Q 005732 543 LLGRSGHLHEAEEFIKDMPIELDAVVW------GA--LLSA--CWFWMNMEVGERAAQKMFGLDKKP------ISAYVIL 606 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~~p~~~~~------~~--l~~~--~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l 606 (680)
.|.+.|+-+.-.++++.++ +++..++ .. ++.+ ..+.+++.+|...+++.++..... +-....|
T Consensus 413 ~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 7889999888888888885 2211111 11 1112 246899999999999988865221 2235677
Q ss_pred HHHHHhcCCchHHHHHHHH
Q 005732 607 SNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~ 625 (680)
+.+....|+..++.+...-
T Consensus 492 s~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHhcchHHHHhccch
Confidence 8888888888887766543
No 469
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.37 E-value=8.5e+02 Score=28.55 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN----AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
.-|...++.+-+.+-.+.+.++-..+++. +.|+ ..+++++.......|.+.+|.+.+-.--+ ..-...+...+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 34666778888888888888887777763 2333 35677777777888888877765543221 12224566777
Q ss_pred HHHHHhcCChHHHH------------H-HHHhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHH-HHHHHHcCCCCCCchH
Q 005732 541 VDLLGRSGHLHEAE------------E-FIKDMP-IEL-D-AVVWGALLSACWFWMNMEVGER-AAQKMFGLDKKPISAY 603 (680)
Q Consensus 541 ~~~~~~~g~~~~A~------------~-~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~ 603 (680)
+-.++.+|.++.-. . +++... ..| . ...|+.|..-+...+|+.+|-. +|+.+..+..+....-
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~ 1140 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTP 1140 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCH
Confidence 77888888766432 2 222221 111 2 3344444444566778777655 5777777766642211
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhhCCCccCCceeEEE
Q 005732 604 VILSNIYAVLGK-WGKKMDIRKRLTHLEVKKDPGCSWIE 641 (680)
Q Consensus 604 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 641 (680)
.++.+.++ +-.|+..+.- .+|++.|+.
T Consensus 1141 ----~~Lekr~ncllaaLNcl~L-------v~p~yawi~ 1168 (1480)
T KOG4521|consen 1141 ----ELLEKRRNCLLAALNCLSL-------VEPDYAWII 1168 (1480)
T ss_pred ----HHHHHhhhHHHHHHHHHHh-------cCCCcceee
Confidence 23333333 2233333222 267888877
No 470
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.50 E-value=97 Score=18.90 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=21.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+|..|+.+-...++|+.|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888887776554
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.44 E-value=5.3e+02 Score=25.93 Aligned_cols=54 Identities=13% Similarity=-0.020 Sum_probs=35.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHh--ccCCHHHHHHHHHH
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATF----VGVLSACV--RAGLVNEGMKIFRS 524 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~--~~g~~~~A~~~~~~ 524 (680)
+..+.+.+++..|.++|+++....+.|....+ ..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556788899999999999887665554433 33333443 24567788888875
No 472
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.44 E-value=4.3e+02 Score=24.90 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCC-------chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDKKPI-------SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|+..|.+.|+++.|-.++--....++.+. ..-..+.......|+|+-+.++.+=++..+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 455666777777777766655554443332 112344555566777877777777666543
No 473
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.39 E-value=73 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
-.-.-.+|.+|...|++++|.++++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445688999999999999999988864
No 474
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=32.16 E-value=76 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=20.4
Q ss_pred HhCCCChHHHHHHHHHHHHcCCCCCCcc
Q 005732 192 AKSVDGCEKALKLFRWMRESGENMPNEY 219 (680)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 219 (680)
..++-+++.|+..|.++...|-.||+.+
T Consensus 35 e~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 35 EDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3344448999999999998877775543
No 475
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.13 E-value=5.4e+02 Score=25.93 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--CCC--CchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLD--KKP--ISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
....+.|+..|...+.++.|..+..+..--+ .++ +...+.++.+..-+++|..|.+.+-....+.+
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 4556778888889999999999887754211 111 33466789999999999999999988776544
No 476
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.12 E-value=5e+02 Score=27.38 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=29.7
Q ss_pred HHHHHhhcCCChhHHHHhhccCC-C----CChhhHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 005732 23 KAITECGRNGQLVTARNLFDQMP-I----RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRS 78 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~-~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 78 (680)
-++..|.+.+++++|..++..|. . .-....+.+.+.+.+..--.+....++.+...
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 46667777777777777776664 1 11223344444444444344444455554443
No 477
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.03 E-value=4e+02 Score=24.29 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..++....+.|+.++|.+.|.+++...-.+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 344445678999999999999999876555
No 478
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.83 E-value=1e+02 Score=23.35 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=15.0
Q ss_pred CChHHHHHHHhhhcCCchhHHHHHHHHHH
Q 005732 133 FEIEEAKRVFDELHEDNELLWSLMLVGYV 161 (680)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 161 (680)
-+.+.+.++++.+..+++..|..+..++-
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 34455555555555555555555555443
No 479
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=31.64 E-value=2.1e+02 Score=20.97 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=22.9
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCC
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWA 63 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 63 (680)
+|+..+-...+..+++.++.+-...+.+-+..+|...-...+.++.+.|
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4444444455555555544433333333334445555555555555554
No 480
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.06 E-value=5.1e+02 Score=26.51 Aligned_cols=48 Identities=6% Similarity=0.037 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCc
Q 005732 384 QLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFES 431 (680)
Q Consensus 384 ~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 431 (680)
++-.-+..-.++|.. .++...+..+.+.+++..|..+-+++++.+..+
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333333333344433 256667788888999999999988888876433
No 481
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=31.00 E-value=1.1e+02 Score=30.59 Aligned_cols=21 Identities=14% Similarity=-0.099 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 005732 539 CVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~ 559 (680)
.|+.+|.+.++.+-|+.-..+
T Consensus 233 klv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhh
Confidence 455567777777777655443
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.89 E-value=1.2e+02 Score=29.01 Aligned_cols=70 Identities=3% Similarity=-0.074 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHH-HHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 562 IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVI-LSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 562 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
...|+..|...+.-..+.|-+.+.-.++.++++..|.+...|.. ...-+...++++.+..++.+-.+.+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 45578888888877777889999999999999999999888776 55667788999999988877665543
No 483
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.70 E-value=5e+02 Score=25.07 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh----------cCChHHH
Q 005732 383 LQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR----------CGSINDA 452 (680)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 452 (680)
.++++.+...++.|.-..+..+.-.+...=.+..+..+|+.+...... |..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777777888888888877777777777788888888877654322 4444444432 3555555
Q ss_pred HHHHhcCCCCCH
Q 005732 453 QASFSSISSPNV 464 (680)
Q Consensus 453 ~~~~~~~~~~~~ 464 (680)
.++++.-...|.
T Consensus 338 mkLLQ~yp~tdi 349 (370)
T KOG4567|consen 338 MKLLQNYPTTDI 349 (370)
T ss_pred HHHHhcCCCCCH
Confidence 555554444443
No 484
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.64 E-value=6e+02 Score=25.97 Aligned_cols=64 Identities=9% Similarity=-0.102 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
-...|+.-|...|++.+|.+.++++-=-.-.+...+-.++.+..+.|+-...+.+++...+.|+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3556777788889999998888775333333445577888888888888777888887777664
No 485
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.12 E-value=4.4e+02 Score=24.24 Aligned_cols=172 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
+++......+++.+...+--..+...+ .|-.|+..-...+ ..+..-|..... +.|.-..+.--+-.+
T Consensus 23 P~s~~~L~~Ll~~i~~~~~~~~~K~~l---------~~YlLlD~~~~~~--~~~~~~Fa~~f~--ip~~~~~~~~g~W~L 89 (226)
T PF13934_consen 23 PKSDNDLRALLDLILSSNVSLLKKHSL---------FYYLLLDLDDTRP--SELAESFARAFG--IPPKYIKFIQGFWLL 89 (226)
T ss_pred ccCHHHHHHHHHHHhcCCcCHHHhHHH---------HHHHHHhcCcccc--ccHHHHHHHHhC--CCHHHHHHHHHHHHh
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
-+ +++++|.+.+ ..+...+..-..++.++...|+...|+.+++..+-.++...-..+......++.+.+|..+-
T Consensus 90 D~-~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DH-GDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQ 163 (226)
T ss_pred Ch-HhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHcCCCCCCchHHHHHHHHH----hcCCchHHHHH
Q 005732 590 QKMFGLDKKPISAYVILSNIYA----VLGKWGKKMDI 622 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~ 622 (680)
+...+ +.....+..+...+. +.++.++-..+
T Consensus 164 R~~~~--~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 164 RSYPD--ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HhCch--hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 486
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.83 E-value=2.8e+02 Score=21.88 Aligned_cols=26 Identities=0% Similarity=0.003 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005732 87 FSTILSVCAQLNSLIDGKQIHCLVLK 112 (680)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (680)
|..++.-|...|.+++|.+++..+.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555555555555544
No 487
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.66 E-value=5.2e+02 Score=28.35 Aligned_cols=230 Identities=11% Similarity=0.060 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCCc---hHhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCHHH----------HHHHHHHHHHcCChh
Q 005732 416 QGQLLHAHLVKTPFES---NVYVGTSLVDMYSRCGSINDAQASFSSISS-PNVAA----------WTALMNGYSHHGLGS 481 (680)
Q Consensus 416 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----------~~~l~~~~~~~~~~~ 481 (680)
+-..++.+|...--.| .+.+...++-.|....+++..+++.+.+.. ||..- |.-.++---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3344555555542222 334455566666667777777777766654 33211 111122122345566
Q ss_pred HHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC-hH
Q 005732 482 EAVLLFEIMLEQ--DIVPNAAT-----FVGV--LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH-LH 551 (680)
Q Consensus 482 ~A~~~~~~m~~~--~~~p~~~~-----~~~l--l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 551 (680)
+|+...-.+.+. .+.||..+ |.-+ -+.|..++..+.|.++|++..+ ..|....=-.+...+...|. ++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhcc
Confidence 677666555543 34555432 2111 1234445566777777777664 23333221111222222221 22
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 552 EAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 552 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
...++ +.++ ..|-..+.+.|..+....+++-+. |. .+-.-++++..|.+.-+.|.+...
T Consensus 339 ns~El-q~Ig--------mkLn~LlgrKG~leklq~YWdV~~---------y~---~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 339 NSLEL-QQIG--------MKLNSLLGRKGALEKLQEYWDVAT---------YF---EASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred chHHH-HHHH--------HHHHHHhhccchHHHHHHHHhHHH---------hh---hhhhhccCHHHHHHHHHHHhccCC
Confidence 22211 1111 112222345666666666655431 21 122236788888888888876532
Q ss_pred ccCCceeEEEEC--CeEEEEecCCCCCCChhHHHHHHHHHH
Q 005732 632 KKDPGCSWIELN--SRVHAFSVEDRNNPNCNVIYATLEHLT 670 (680)
Q Consensus 632 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (680)
..++-...++ -..+.|.......+.-++.++-|-++-
T Consensus 398 --P~WYLkS~meni~l~~~fr~t~e~p~~e~q~~~FWmdF~ 436 (1226)
T KOG4279|consen 398 --PVWYLKSTMENILLINRFRPTIEPPEKEKQQFLFWMDFF 436 (1226)
T ss_pred --ceehHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHH
Confidence 2221111122 122456555556666777777777653
No 488
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.48 E-value=5.4e+02 Score=25.04 Aligned_cols=110 Identities=15% Similarity=-0.034 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcC-C---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005732 515 VNEGMKIFRSMKSYG-V---VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQ 590 (680)
Q Consensus 515 ~~~A~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 590 (680)
.+.|.+.|+.....+ . ..++.....+.....+.|..++-..+++.....++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 567778888877531 1 445566666667777788776666666666556678888888888888889998889999
Q ss_pred HHHcCC-CCCCchHHHHHHHHHhcCCc--hHHHHHHHH
Q 005732 591 KMFGLD-KKPISAYVILSNIYAVLGKW--GKKMDIRKR 625 (680)
Q Consensus 591 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 625 (680)
.++..+ -.+...... ...+...+.. +.+.+.++.
T Consensus 226 ~~l~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYV-LAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHH-HHHHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHH-HHHHhcCChhhHHHHHHHHHH
Confidence 998853 222233333 3333323333 555555443
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.28 E-value=1.4e+02 Score=27.87 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcc---------CChhHHHHHHHHHhccCChhhHHHHHh
Q 005732 289 SLINGLISMGRIEDAELIFNRLTE---------ANSISYNSMIKGYAVYGQVDDSKRLFE 339 (680)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 339 (680)
.+...|...|++++|.++|+.+.. +...+...+..++...|+.+....+.-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445556666666666666666532 222344455566666777666655443
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.62 E-value=4.7e+02 Score=24.13 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
.|.+.....++..|. .+++++|.+.+.+..+++-.+......+.++.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777664 46888899988888888776655555544443
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.62 E-value=1.4e+02 Score=23.71 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=29.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 005732 54 TMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLN 98 (680)
Q Consensus 54 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~ 98 (680)
.++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 355666666667778888888877776666666555555555544
No 492
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.19 E-value=4.7e+02 Score=23.96 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---ChhHHH--HHHHHHHhcCChHHHHHHHH
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP---TLEHYT--CVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~ 558 (680)
.+..+++.. +.+...-++.|+--|.-...+.+|.+.|..-. |+.| +...++ .-|....+.|+.++|++.+.
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 344444444 56666677777776666666666666665433 3333 333333 45667789999999999999
Q ss_pred hCC---CCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHc
Q 005732 559 DMP---IELDAVVWGALL----SACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 559 ~~~---~~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~ 594 (680)
... +..|...+-.|. .-..+.|..++|+++.+.=+.
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 882 334432332222 224578888888888765433
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.11 E-value=3e+02 Score=23.85 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCC
Q 005732 66 DESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCF 133 (680)
Q Consensus 66 ~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (680)
+....+-+.++..|++++..-. .++..+...++.-.|.++++.+.+.+...+..|-..-+..+...|
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 494
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.03 E-value=1.1e+02 Score=22.87 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=14.8
Q ss_pred CChhHHHHhhccCCCCChhhHHHHHHHHHcCC
Q 005732 32 GQLVTARNLFDQMPIRTVVSWNTMLCGYSKWA 63 (680)
Q Consensus 32 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 63 (680)
.+.++|.++++-++.+...+|..+..++...|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34444444444444444444444444444443
No 495
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=28.03 E-value=6.8e+02 Score=25.79 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHhCCChHHHHHHHHH---HHHCCCCC-ChhhHHHHH
Q 005732 372 GYVQNNLHEKALQLYMT---MRKLAIDR-TRSTFSVLF 405 (680)
Q Consensus 372 ~~~~~~~~~~A~~~~~~---m~~~~~~p-~~~~~~~ll 405 (680)
.|+.+|+++..+++|.- |+++.+.| ++.|-+.++
T Consensus 346 vyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssll 383 (615)
T KOG0508|consen 346 VYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLL 383 (615)
T ss_pred eecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence 47778888888888765 45555554 334444444
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.00 E-value=2e+02 Score=22.59 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
..||+..|++.+.++.+..+.++-.|..-+.+-..+|
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 4677788877777776665555545554455444444
No 497
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.88 E-value=3.4e+02 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 005732 518 GMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 518 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
..++|..|...|+-.. ...|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665555443 3344555566666666666666664
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.58 E-value=6.5e+02 Score=25.42 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=13.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHhhc
Q 005732 256 GGALIEFYCGCEAFDGAMRVYDRL 279 (680)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~~ 279 (680)
+..+...|..+|+++.|.+.|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 444555555566666666655553
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.58 E-value=3e+02 Score=23.17 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=28.2
Q ss_pred HHhCCCCCCHhhHHHHHHHHhcc-CChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCC
Q 005732 75 MHRSNVKLNETTFSTILSVCAQL-NSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCF 133 (680)
Q Consensus 75 m~~~~~~~~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (680)
+.+.|++++..-.. ++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 8 l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44455554443222 23333332 345566666666666665555444444444444444
No 500
>PHA00425 DNA packaging protein, small subunit
Probab=27.35 E-value=2.3e+02 Score=20.55 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=35.7
Q ss_pred ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005732 330 QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHA 407 (680)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 407 (680)
+.+.|..++..+.... +.++..||++...+.+++ ..-..++||..+..-+..+
T Consensus 14 DTE~a~~mL~DL~dde--------------kRtPQLYnAIgKlL~RHk-----------F~isKl~pD~~iLg~la~~ 66 (88)
T PHA00425 14 DTEMAQRMLADLKDDE--------------KRTPQLYNAIGKLLDRHK-----------FQISKLQPDENILGGLAAA 66 (88)
T ss_pred hHHHHHHHHHHhcCcc--------------ccChHHHHHHHHHHHHhc-----------ccccccCCcHHHHHHHHHH
Confidence 5567777777777665 678899999887766643 2223477888776555443
Done!