Query 005732
Match_columns 680
No_of_seqs 604 out of 3678
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 05:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-40 5.1E-45 359.6 35.7 517 28-611 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-37 3.8E-42 337.0 40.5 479 129-630 63-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.8E-27 1.6E-31 238.9 40.7 367 229-615 10-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-26 7.2E-31 234.1 37.2 351 259-629 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.4E-27 1.5E-31 242.4 22.9 203 332-547 7-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.6E-26 5.3E-31 238.3 20.6 189 49-266 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.5E-27 213.4 34.8 431 184-630 9-479 (514)
8 3fp2_A TPR repeat-containing p 99.9 4.9E-22 1.7E-26 211.5 34.5 424 182-630 26-492 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 3.2E-22 1.1E-26 207.7 32.0 323 283-625 25-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 2E-22 6.9E-27 213.2 28.5 282 315-607 186-490 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.8E-26 203.7 31.5 346 255-619 28-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.8E-21 1.6E-25 203.8 34.2 427 152-604 27-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.6E-19 9E-24 179.5 32.9 297 315-629 3-335 (359)
14 1xi4_A Clathrin heavy chain; a 99.9 1.6E-16 5.4E-21 173.1 54.3 275 321-624 1055-1340(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 7.4E-19 2.5E-23 176.2 30.9 306 288-613 7-353 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 8.9E-16 3E-20 167.3 55.0 528 21-622 988-1585(1630)
17 2xm6_A Protein corresponding t 99.8 1.6E-17 5.4E-22 173.8 38.1 377 201-612 26-452 (490)
18 3hym_B Cell division cycle pro 99.8 3.5E-18 1.2E-22 169.1 26.5 285 316-617 23-322 (330)
19 2xm6_A Protein corresponding t 99.8 1.4E-16 4.7E-21 166.7 39.6 361 238-631 27-434 (490)
20 3hym_B Cell division cycle pro 99.8 1.3E-17 4.5E-22 164.9 27.1 266 360-629 19-299 (330)
21 1fch_A Peroxisomal targeting s 99.8 4.1E-18 1.4E-22 171.5 22.3 258 365-626 66-356 (368)
22 1b89_A Protein (clathrin heavy 99.8 7.9E-18 2.7E-22 164.7 22.2 281 30-341 15-308 (449)
23 4g1t_A Interferon-induced prot 99.8 2E-17 7E-22 172.6 25.8 386 217-640 50-470 (472)
24 2ooe_A Cleavage stimulation fa 99.8 1E-15 3.5E-20 161.8 38.3 396 217-631 12-494 (530)
25 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 7.9E-21 151.7 27.9 257 322-600 6-269 (291)
26 1b89_A Protein (clathrin heavy 99.8 2E-16 6.8E-21 154.8 25.9 221 131-391 15-235 (449)
27 4eqf_A PEX5-related protein; a 99.8 2E-17 6.8E-22 166.2 19.6 261 362-625 64-352 (365)
28 1fch_A Peroxisomal targeting s 99.7 1.6E-16 5.6E-21 159.7 23.0 292 264-593 36-357 (368)
29 2ooe_A Cleavage stimulation fa 99.7 3.3E-15 1.1E-19 157.9 32.9 373 241-630 2-455 (530)
30 4g1t_A Interferon-induced prot 99.7 1.2E-15 4.2E-20 159.0 27.4 383 181-607 51-471 (472)
31 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.5E-21 159.6 19.7 224 284-526 65-308 (365)
32 3cv0_A Peroxisome targeting si 99.7 1.6E-16 5.4E-21 156.9 18.7 263 362-628 20-314 (327)
33 3cv0_A Peroxisome targeting si 99.7 2.5E-15 8.6E-20 148.2 24.2 222 287-526 24-267 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 1.7E-14 5.7E-19 138.7 23.8 269 130-456 10-288 (291)
35 2pl2_A Hypothetical conserved 99.6 5.5E-15 1.9E-19 135.7 18.3 195 430-627 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.6 2.3E-14 7.9E-19 135.8 20.4 229 363-630 5-237 (258)
37 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-14 6.7E-19 147.8 20.2 255 364-629 142-421 (452)
38 3uq3_A Heat shock protein STI1 99.6 4E-14 1.4E-18 134.2 20.4 205 361-608 36-255 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 2.6E-16 8.8E-21 166.3 5.5 129 17-145 126-262 (1134)
40 3u4t_A TPR repeat-containing p 99.6 1.2E-13 4E-18 132.2 22.0 250 317-614 5-269 (272)
41 3e4b_A ALGK; tetratricopeptide 99.6 6.7E-14 2.3E-18 143.8 21.5 344 224-631 9-389 (452)
42 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-15 4.3E-20 161.1 8.4 128 429-556 123-258 (1134)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.9E-14 2E-18 134.5 18.2 241 375-623 17-269 (275)
44 1ouv_A Conserved hypothetical 99.6 8.2E-13 2.8E-17 126.3 25.8 227 360-631 3-253 (273)
45 2h6f_A Protein farnesyltransfe 99.6 4.2E-13 1.4E-17 133.4 22.4 248 361-613 95-366 (382)
46 1ouv_A Conserved hypothetical 99.5 1.5E-12 5.2E-17 124.4 24.7 197 360-599 35-255 (273)
47 2ho1_A Type 4 fimbrial biogene 99.5 5.9E-13 2E-17 125.6 21.3 197 433-630 37-239 (252)
48 2pl2_A Hypothetical conserved 99.5 3.9E-13 1.3E-17 123.2 19.1 207 360-592 2-211 (217)
49 2vq2_A PILW, putative fimbrial 99.5 1.5E-12 5.1E-17 120.3 21.9 200 430-630 5-212 (225)
50 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-13 7.8E-18 127.6 16.4 144 464-609 91-236 (243)
51 2h6f_A Protein farnesyltransfe 99.5 5.3E-13 1.8E-17 132.6 19.1 226 399-629 98-348 (382)
52 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4E-17 116.8 19.3 166 463-631 4-172 (184)
53 2q7f_A YRRB protein; TPR, prot 99.5 4E-13 1.4E-17 126.0 17.1 197 432-630 22-223 (243)
54 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 8E-17 121.5 22.4 207 363-603 37-246 (252)
55 3u4t_A TPR repeat-containing p 99.5 6E-13 2.1E-17 127.2 18.3 236 364-631 4-252 (272)
56 4a1s_A PINS, partner of inscut 99.5 2.4E-13 8.1E-18 138.8 15.5 267 363-630 48-373 (411)
57 4abn_A Tetratricopeptide repea 99.5 2.8E-13 9.5E-18 140.1 15.1 193 430-625 99-317 (474)
58 2vq2_A PILW, putative fimbrial 99.5 5E-12 1.7E-16 116.7 21.8 212 360-605 5-221 (225)
59 3sf4_A G-protein-signaling mod 99.5 1E-12 3.5E-17 133.7 18.7 269 360-629 6-336 (406)
60 3sf4_A G-protein-signaling mod 99.5 1.6E-13 5.4E-18 139.8 12.1 288 317-618 11-365 (406)
61 3ro2_A PINS homolog, G-protein 99.5 1.3E-12 4.4E-17 129.1 17.9 267 363-630 5-333 (338)
62 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.8E-13 3E-17 126.2 15.7 187 288-492 47-243 (275)
63 4a1s_A PINS, partner of inscut 99.4 1.4E-12 4.9E-17 133.0 15.5 268 317-598 50-375 (411)
64 4gyw_A UDP-N-acetylglucosamine 99.4 5.7E-12 1.9E-16 135.4 18.6 162 464-628 9-173 (723)
65 3ro2_A PINS homolog, G-protein 99.4 2.6E-12 8.8E-17 126.9 14.4 268 318-599 8-336 (338)
66 3ulq_A Response regulator aspa 99.4 9.1E-12 3.1E-16 125.6 18.5 233 369-628 109-367 (383)
67 4e6h_A MRNA 3'-END-processing 99.4 2E-09 6.7E-14 114.3 36.1 417 199-632 49-573 (679)
68 3ulq_A Response regulator aspa 99.4 5.8E-12 2E-16 127.0 16.2 188 439-626 109-332 (383)
69 4e6h_A MRNA 3'-END-processing 99.4 3.4E-09 1.2E-13 112.5 35.7 228 360-600 340-575 (679)
70 3vtx_A MAMA; tetratricopeptide 99.3 2.7E-11 9.3E-16 107.8 16.8 166 432-599 4-174 (184)
71 2ond_A Cleavage stimulation fa 99.3 8.1E-11 2.8E-15 114.4 21.0 217 380-599 33-274 (308)
72 4i17_A Hypothetical protein; T 99.3 6.3E-11 2.1E-15 109.6 18.5 164 465-629 8-209 (228)
73 2ond_A Cleavage stimulation fa 99.3 5.2E-10 1.8E-14 108.7 25.6 215 415-633 33-274 (308)
74 3as5_A MAMA; tetratricopeptide 99.3 4.4E-11 1.5E-15 106.4 16.1 159 470-630 14-174 (186)
75 3nf1_A KLC 1, kinesin light ch 99.3 3.9E-12 1.3E-16 124.1 9.8 244 360-628 24-306 (311)
76 3nf1_A KLC 1, kinesin light ch 99.3 4.1E-12 1.4E-16 124.0 9.2 162 466-627 71-271 (311)
77 1hz4_A MALT regulatory protein 99.3 1.7E-09 5.7E-14 108.5 27.5 265 365-629 16-322 (373)
78 3q15_A PSP28, response regulat 99.3 1.9E-10 6.6E-15 115.5 20.4 236 320-594 106-364 (378)
79 4i17_A Hypothetical protein; T 99.3 3.1E-10 1.1E-14 104.9 19.0 205 396-610 5-224 (228)
80 4abn_A Tetratricopeptide repea 99.3 8.9E-11 3E-15 121.3 16.8 213 198-459 84-318 (474)
81 3q15_A PSP28, response regulat 99.2 3.5E-10 1.2E-14 113.6 19.7 228 368-628 106-364 (378)
82 3as5_A MAMA; tetratricopeptide 99.2 8.5E-10 2.9E-14 98.0 19.6 168 433-602 8-180 (186)
83 1qqe_A Vesicular transport pro 99.2 5.3E-10 1.8E-14 107.6 17.1 205 378-599 32-273 (292)
84 1hz4_A MALT regulatory protein 99.2 9.2E-10 3.1E-14 110.4 19.5 266 320-598 19-325 (373)
85 4gyw_A UDP-N-acetylglucosamine 99.1 3.6E-10 1.2E-14 121.4 14.3 166 430-598 6-177 (723)
86 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.6E-13 95.4 22.2 239 371-630 21-283 (310)
87 3qky_A Outer membrane assembly 99.1 2E-09 7E-14 101.7 16.9 183 432-630 14-225 (261)
88 1qqe_A Vesicular transport pro 99.1 6.1E-10 2.1E-14 107.2 13.3 227 381-627 3-267 (292)
89 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.4E-09 2.2E-13 95.6 19.0 182 435-634 6-218 (225)
90 3edt_B KLC 2, kinesin light ch 99.1 8.4E-10 2.9E-14 105.7 13.5 221 409-629 12-281 (283)
91 4ga2_A E3 SUMO-protein ligase 99.0 2.1E-10 7.2E-15 97.8 6.7 139 474-615 7-149 (150)
92 3qou_A Protein YBBN; thioredox 99.0 4.1E-09 1.4E-13 100.9 16.3 171 454-628 107-283 (287)
93 3mv2_B Coatomer subunit epsilo 99.0 2.3E-08 7.9E-13 93.8 20.8 245 322-603 20-290 (310)
94 2fo7_A Synthetic consensus TPR 99.0 5.8E-09 2E-13 86.8 14.8 125 505-630 7-133 (136)
95 3qky_A Outer membrane assembly 99.0 4.8E-09 1.6E-13 99.1 15.3 203 396-619 13-251 (261)
96 3rjv_A Putative SEL1 repeat pr 99.0 2E-08 6.9E-13 91.2 18.6 162 462-631 16-199 (212)
97 3edt_B KLC 2, kinesin light ch 99.0 3.9E-09 1.3E-13 100.9 13.9 223 374-596 12-282 (283)
98 2r5s_A Uncharacterized protein 99.0 4.1E-09 1.4E-13 92.7 12.9 154 471-628 13-172 (176)
99 4ga2_A E3 SUMO-protein ligase 99.0 1E-09 3.5E-14 93.4 8.4 124 505-629 3-129 (150)
100 2pzi_A Probable serine/threoni 99.0 2.2E-09 7.6E-14 116.1 12.5 147 409-560 402-560 (681)
101 2fo7_A Synthetic consensus TPR 98.9 3.3E-08 1.1E-12 82.1 16.0 132 466-599 3-136 (136)
102 3urz_A Uncharacterized protein 98.9 2.4E-08 8.3E-13 90.4 15.3 128 468-599 58-190 (208)
103 2ifu_A Gamma-SNAP; membrane fu 98.9 2.2E-08 7.4E-13 97.1 15.5 219 376-622 4-254 (307)
104 2vgx_A Chaperone SYCD; alterna 98.9 7E-09 2.4E-13 87.9 9.8 98 533-630 20-119 (148)
105 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.4E-13 106.5 15.9 159 446-607 2-169 (568)
106 2pzi_A Probable serine/threoni 98.9 7.6E-08 2.6E-12 104.1 20.0 145 464-612 433-580 (681)
107 3gyz_A Chaperone protein IPGC; 98.9 1.2E-08 4.2E-13 86.2 10.5 97 534-630 36-134 (151)
108 4gco_A Protein STI-1; structur 98.9 2.9E-08 1E-12 81.3 12.6 93 537-629 16-110 (126)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.8E-08 3E-12 87.1 16.0 130 465-599 7-154 (213)
110 4gco_A Protein STI-1; structur 98.8 3.6E-08 1.2E-12 80.8 12.0 114 495-609 8-124 (126)
111 3urz_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 86.1 15.9 133 368-504 59-195 (208)
112 3u3w_A Transcriptional activat 98.8 6.4E-07 2.2E-11 86.0 22.1 160 469-628 80-265 (293)
113 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 5.9E-12 99.5 19.3 145 412-560 3-154 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-08 5.1E-13 98.2 9.6 196 410-627 3-222 (307)
115 2xcb_A PCRH, regulatory protei 98.8 6.2E-08 2.1E-12 81.5 11.9 118 535-675 19-138 (142)
116 3dra_A Protein farnesyltransfe 98.8 7.1E-07 2.4E-11 84.8 20.2 226 374-604 43-297 (306)
117 2qfc_A PLCR protein; TPR, HTH, 98.8 2.9E-07 1E-11 88.4 17.6 163 466-628 77-265 (293)
118 3dra_A Protein farnesyltransfe 98.7 6.8E-06 2.3E-10 78.1 25.8 230 378-628 31-286 (306)
119 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.7E-07 9.3E-12 84.7 15.7 186 397-602 3-220 (225)
120 2r5s_A Uncharacterized protein 98.7 1.6E-07 5.5E-12 82.4 13.5 61 362-422 107-168 (176)
121 3rjv_A Putative SEL1 repeat pr 98.7 8.7E-07 3E-11 80.3 18.7 162 361-531 16-200 (212)
122 3upv_A Heat shock protein STI1 98.7 1.3E-07 4.4E-12 77.6 11.5 119 535-673 5-125 (126)
123 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.8E-12 83.5 11.6 117 512-629 23-144 (177)
124 1a17_A Serine/threonine protei 98.7 2.7E-07 9.2E-12 79.9 13.8 127 501-628 15-145 (166)
125 3qou_A Protein YBBN; thioredox 98.7 5.8E-07 2E-11 85.9 17.1 166 275-456 108-278 (287)
126 2c2l_A CHIP, carboxy terminus 98.7 4.5E-08 1.5E-12 93.2 9.2 192 432-629 3-199 (281)
127 2uy1_A Cleavage stimulation fa 98.7 1.3E-05 4.5E-10 82.5 28.3 215 333-594 197-412 (493)
128 4f3v_A ESX-1 secretion system 98.7 1.3E-07 4.6E-12 87.5 11.7 183 445-631 18-239 (282)
129 1p5q_A FKBP52, FK506-binding p 98.7 1.5E-07 5.1E-12 92.2 12.9 144 464-628 147-293 (336)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.3E-06 4.4E-11 79.3 18.3 130 435-565 8-153 (213)
131 2vyi_A SGTA protein; chaperone 98.6 4.4E-07 1.5E-11 74.7 13.2 118 499-617 12-131 (131)
132 1na0_A Designed protein CTPR3; 98.6 5.6E-07 1.9E-11 73.3 13.6 115 499-614 9-125 (125)
133 2lni_A Stress-induced-phosphop 98.6 4.1E-07 1.4E-11 75.2 12.4 115 500-615 17-133 (133)
134 2kck_A TPR repeat; tetratricop 98.6 3E-07 1E-11 73.3 10.4 100 533-632 5-109 (112)
135 1hxi_A PEX5, peroxisome target 98.6 1.6E-07 5.4E-12 76.3 8.7 95 536-630 19-115 (121)
136 4f3v_A ESX-1 secretion system 98.6 4.4E-07 1.5E-11 84.0 12.5 138 467-608 105-249 (282)
137 3u3w_A Transcriptional activat 98.6 4.5E-06 1.5E-10 80.0 20.2 157 439-595 81-266 (293)
138 3gyz_A Chaperone protein IPGC; 98.6 5.4E-07 1.9E-11 76.0 11.5 105 495-600 31-138 (151)
139 2vgx_A Chaperone SYCD; alterna 98.5 2.4E-07 8.4E-12 78.3 8.9 115 487-604 10-127 (148)
140 4gcn_A Protein STI-1; structur 98.5 2.2E-07 7.5E-12 76.2 7.8 93 536-628 10-111 (127)
141 3sz7_A HSC70 cochaperone (SGT) 98.5 3.8E-07 1.3E-11 78.8 9.7 111 498-609 10-122 (164)
142 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.4E-11 78.5 13.5 129 500-628 27-175 (203)
143 2fbn_A 70 kDa peptidylprolyl i 98.5 8.2E-07 2.8E-11 79.5 12.0 168 443-630 14-187 (198)
144 2qfc_A PLCR protein; TPR, HTH, 98.5 1.5E-06 5.2E-11 83.4 14.6 161 435-595 77-266 (293)
145 3q49_B STIP1 homology and U bo 98.5 8.7E-07 3E-11 73.8 11.3 98 533-630 8-107 (137)
146 2uy1_A Cleavage stimulation fa 98.5 4.9E-05 1.7E-09 78.2 26.5 375 183-628 17-412 (493)
147 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-06 3.8E-11 70.6 10.9 92 537-628 7-100 (118)
148 2lni_A Stress-induced-phosphop 98.5 9.6E-07 3.3E-11 72.9 10.6 100 531-630 13-114 (133)
149 2e2e_A Formate-dependent nitri 98.5 1.8E-06 6.1E-11 75.7 12.7 127 475-603 21-152 (177)
150 1elw_A TPR1-domain of HOP; HOP 98.5 3.3E-06 1.1E-10 67.8 13.4 110 500-610 5-116 (118)
151 2dba_A Smooth muscle cell asso 98.4 1.6E-06 5.5E-11 73.1 11.8 95 534-628 28-127 (148)
152 3rkv_A Putative peptidylprolyl 98.4 1.1E-06 3.7E-11 75.7 10.5 64 566-629 63-126 (162)
153 2hr2_A Hypothetical protein; a 98.4 6.6E-07 2.3E-11 74.5 8.4 63 567-629 58-131 (159)
154 1na0_A Designed protein CTPR3; 98.4 1.4E-06 4.9E-11 70.8 10.5 97 534-630 9-107 (125)
155 3gw4_A Uncharacterized protein 98.4 1.5E-06 5E-11 78.1 11.3 152 446-597 5-178 (203)
156 3q7a_A Farnesyltransferase alp 98.4 0.00022 7.6E-09 68.4 26.6 173 372-549 63-257 (349)
157 3upv_A Heat shock protein STI1 98.4 2.9E-06 9.9E-11 69.3 11.8 110 501-611 6-123 (126)
158 2xcb_A PCRH, regulatory protei 98.4 1.9E-06 6.4E-11 72.3 10.6 107 500-607 19-127 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.4 4.2E-06 1.4E-10 72.2 12.9 93 465-560 12-105 (164)
160 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.9E-06 9.8E-11 86.9 13.3 145 464-629 268-415 (457)
161 2vyi_A SGTA protein; chaperone 98.4 2.3E-06 8E-11 70.2 10.4 98 533-630 11-110 (131)
162 3lvg_A Clathrin heavy chain 1; 98.4 7.1E-08 2.4E-12 93.1 0.9 463 16-558 52-536 (624)
163 2xev_A YBGF; tetratricopeptide 98.3 1.3E-06 4.3E-11 71.8 8.0 90 540-629 8-105 (129)
164 2dba_A Smooth muscle cell asso 98.3 8.5E-06 2.9E-10 68.6 13.3 111 499-611 28-144 (148)
165 1a17_A Serine/threonine protei 98.3 1.5E-05 5.3E-10 68.5 14.5 128 465-594 14-145 (166)
166 3q49_B STIP1 homology and U bo 98.3 6E-06 2E-10 68.6 11.2 111 498-609 8-125 (137)
167 3k9i_A BH0479 protein; putativ 98.3 5.9E-07 2E-11 72.4 4.7 83 547-629 3-90 (117)
168 2c2l_A CHIP, carboxy terminus 98.3 2.9E-06 9.8E-11 80.7 10.2 93 184-280 7-99 (281)
169 3q7a_A Farnesyltransferase alp 98.3 0.00043 1.5E-08 66.4 25.1 164 270-449 71-258 (349)
170 1wao_1 Serine/threonine protei 98.2 3.2E-06 1.1E-10 87.0 10.3 117 508-625 15-135 (477)
171 1elr_A TPR2A-domain of HOP; HO 98.2 3.5E-06 1.2E-10 69.2 8.5 92 537-628 7-107 (131)
172 2xev_A YBGF; tetratricopeptide 98.2 1.5E-05 5.1E-10 65.2 12.3 105 505-609 8-119 (129)
173 2if4_A ATFKBP42; FKBP-like, al 98.2 2.7E-06 9.4E-11 83.2 9.0 150 464-632 179-331 (338)
174 3dss_A Geranylgeranyl transfer 98.2 0.00017 6E-09 68.8 20.9 164 464-629 108-304 (331)
175 2fbn_A 70 kDa peptidylprolyl i 98.2 1.5E-05 5E-10 71.2 13.0 93 537-629 41-151 (198)
176 1hxi_A PEX5, peroxisome target 98.2 7E-06 2.4E-10 66.4 9.7 97 503-600 21-119 (121)
177 1ihg_A Cyclophilin 40; ppiase 98.2 6.1E-06 2.1E-10 81.6 10.9 139 464-622 223-363 (370)
178 1p5q_A FKBP52, FK506-binding p 98.2 1.5E-05 5E-10 77.9 13.6 95 431-527 145-258 (336)
179 3ro3_A PINS homolog, G-protein 98.2 6.4E-06 2.2E-10 70.6 9.8 92 537-628 52-157 (164)
180 4gcn_A Protein STI-1; structur 98.2 1.3E-05 4.6E-10 65.4 11.0 105 466-598 10-115 (127)
181 1elr_A TPR2A-domain of HOP; HO 98.2 7.3E-06 2.5E-10 67.2 9.1 108 503-612 8-124 (131)
182 3k9i_A BH0479 protein; putativ 98.2 2.1E-06 7.1E-11 69.2 5.5 92 512-603 3-98 (117)
183 3n71_A Histone lysine methyltr 98.2 1.3E-05 4.5E-10 81.7 12.5 128 509-636 319-471 (490)
184 1dce_A Protein (RAB geranylger 98.1 8.8E-05 3E-09 77.6 18.6 168 449-618 45-244 (567)
185 2kck_A TPR repeat; tetratricop 98.1 1.9E-05 6.6E-10 62.5 10.7 100 500-600 7-111 (112)
186 4b4t_Q 26S proteasome regulato 98.1 1.2E-05 4E-10 82.2 11.3 162 467-628 58-244 (434)
187 1wao_1 Serine/threonine protei 98.1 4.2E-05 1.4E-09 78.6 15.3 114 474-590 16-134 (477)
188 2l6j_A TPR repeat-containing p 98.1 1.6E-06 5.6E-11 68.9 3.8 94 533-626 3-104 (111)
189 3dss_A Geranylgeranyl transfer 98.1 0.00044 1.5E-08 66.0 20.8 242 364-610 27-319 (331)
190 2hr2_A Hypothetical protein; a 98.1 9.5E-06 3.3E-10 67.6 8.1 72 536-607 59-143 (159)
191 3rkv_A Putative peptidylprolyl 98.1 1E-05 3.5E-10 69.5 8.8 78 534-611 63-143 (162)
192 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.6E-10 61.6 8.5 66 564-629 5-70 (100)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.5E-10 77.7 10.1 150 433-600 179-333 (338)
194 1ihg_A Cyclophilin 40; ppiase 98.0 2.3E-05 8E-10 77.4 11.3 113 499-629 223-336 (370)
195 3bee_A Putative YFRE protein; 98.0 2.3E-05 7.8E-10 59.3 8.4 70 563-632 3-75 (93)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.3E-05 7.9E-10 80.2 10.5 114 499-630 268-381 (457)
197 3ro3_A PINS homolog, G-protein 98.0 2.9E-05 9.8E-10 66.4 9.5 132 466-597 11-160 (164)
198 4b4t_Q 26S proteasome regulato 97.9 0.00029 9.8E-09 71.7 17.8 157 370-526 11-202 (434)
199 1na3_A Designed protein CTPR2; 97.9 3.3E-05 1.1E-09 58.4 8.1 81 534-614 9-91 (91)
200 2kat_A Uncharacterized protein 97.9 2.4E-05 8.2E-10 62.5 7.6 78 552-629 3-82 (115)
201 1zu2_A Mitochondrial import re 97.9 8.5E-06 2.9E-10 67.7 4.0 85 546-630 14-121 (158)
202 1klx_A Cysteine rich protein B 97.8 9.4E-05 3.2E-09 61.2 9.8 89 540-630 31-127 (138)
203 2l6j_A TPR repeat-containing p 97.8 7.1E-05 2.4E-09 59.1 7.7 68 564-631 2-69 (111)
204 3n71_A Histone lysine methyltr 97.7 8.1E-05 2.8E-09 75.9 9.4 115 542-674 317-449 (490)
205 1dce_A Protein (RAB geranylger 97.7 0.00061 2.1E-08 71.3 15.8 156 475-633 39-225 (567)
206 3qwp_A SET and MYND domain-con 97.6 0.0002 7E-09 71.8 10.5 114 543-674 296-427 (429)
207 1klx_A Cysteine rich protein B 97.6 0.00074 2.5E-08 55.7 12.2 112 478-597 9-128 (138)
208 1na3_A Designed protein CTPR2; 97.6 0.00017 5.7E-09 54.4 7.2 66 565-630 8-73 (91)
209 3lvg_A Clathrin heavy chain 1; 97.6 2.6E-07 9E-12 89.3 -10.7 118 361-485 197-325 (624)
210 1zu2_A Mitochondrial import re 97.5 0.0001 3.6E-09 61.1 5.5 51 550-600 62-125 (158)
211 3qww_A SET and MYND domain-con 97.4 0.00031 1.1E-08 70.3 8.6 103 547-667 311-431 (433)
212 2kat_A Uncharacterized protein 97.4 0.00045 1.5E-08 54.9 7.9 81 518-599 4-86 (115)
213 2kc7_A BFR218_protein; tetratr 97.3 0.00048 1.7E-08 52.9 6.6 64 540-603 6-72 (99)
214 1pc2_A Mitochondria fission pr 97.3 0.001 3.6E-08 54.5 8.5 88 514-602 13-107 (152)
215 3qww_A SET and MYND domain-con 97.1 0.002 7E-08 64.4 10.8 68 535-602 341-423 (433)
216 2kc7_A BFR218_protein; tetratr 97.1 0.0024 8.1E-08 48.8 8.9 55 575-629 9-64 (99)
217 3ly7_A Transcriptional activat 97.1 0.011 3.8E-07 56.6 14.7 45 463-509 193-243 (372)
218 3qwp_A SET and MYND domain-con 97.1 0.0046 1.6E-07 62.0 12.7 97 508-604 296-414 (429)
219 3ma5_A Tetratricopeptide repea 97.1 0.0009 3.1E-08 51.5 5.9 67 533-599 6-74 (100)
220 3u64_A Protein TP_0956; tetrat 97.0 0.002 6.8E-08 58.9 8.0 86 551-636 180-276 (301)
221 1pc2_A Mitochondria fission pr 96.8 0.0044 1.5E-07 50.8 8.3 69 563-631 29-102 (152)
222 3ly7_A Transcriptional activat 96.6 0.013 4.5E-07 56.1 11.1 134 496-631 191-341 (372)
223 2v5f_A Prolyl 4-hydroxylase su 96.6 0.012 4.1E-07 45.4 8.8 44 564-607 44-87 (104)
224 4ady_A RPN2, 26S proteasome re 96.5 1.3 4.4E-05 48.2 32.1 261 228-509 384-671 (963)
225 1wy6_A Hypothetical protein ST 96.4 0.084 2.9E-06 41.4 12.2 141 474-632 17-157 (172)
226 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.4E-06 56.9 19.6 149 264-456 610-759 (814)
227 3bee_A Putative YFRE protein; 96.4 0.023 8E-07 42.5 9.2 69 531-599 3-76 (93)
228 1nzn_A CGI-135 protein, fissio 96.3 0.022 7.6E-07 44.8 8.6 87 514-601 16-109 (126)
229 2v5f_A Prolyl 4-hydroxylase su 96.3 0.015 5.3E-07 44.8 7.9 66 564-629 3-75 (104)
230 3mkq_A Coatomer beta'-subunit; 96.2 0.045 1.5E-06 60.6 14.4 28 498-525 680-707 (814)
231 1qsa_A Protein (soluble lytic 96.1 1.7 5.8E-05 45.4 31.3 113 479-594 229-347 (618)
232 1wy6_A Hypothetical protein ST 96.0 0.16 5.6E-06 39.8 11.9 62 366-428 94-155 (172)
233 1nzn_A CGI-135 protein, fissio 95.9 0.068 2.3E-06 42.0 9.8 68 563-630 32-104 (126)
234 3o48_A Mitochondria fission 1 95.6 0.059 2E-06 42.5 8.3 66 563-628 37-106 (134)
235 1y8m_A FIS1; mitochondria, unk 95.6 0.24 8.3E-06 39.6 11.8 30 570-599 81-110 (144)
236 3mkq_B Coatomer subunit alpha; 95.6 0.35 1.2E-05 40.6 13.5 102 443-561 15-116 (177)
237 1qsa_A Protein (soluble lytic 94.8 4.6 0.00016 42.2 31.2 344 25-420 79-435 (618)
238 4ady_A RPN2, 26S proteasome re 94.8 5.8 0.0002 43.2 35.5 277 291-578 381-673 (963)
239 3mkq_B Coatomer subunit alpha; 94.4 1.4 4.8E-05 37.0 13.9 130 472-627 13-142 (177)
240 4gns_B Protein CSD3, chitin bi 94.1 0.14 4.7E-06 54.5 8.9 53 574-626 345-397 (754)
241 3u64_A Protein TP_0956; tetrat 94.0 1.6 5.5E-05 40.1 14.4 77 481-559 180-265 (301)
242 4h7y_A Dual specificity protei 93.8 0.27 9.4E-06 39.6 8.0 100 498-599 12-127 (161)
243 3lpz_A GET4 (YOR164C homolog); 93.6 4.9 0.00017 37.8 18.1 131 21-162 38-179 (336)
244 4h7y_A Dual specificity protei 93.3 0.54 1.8E-05 38.0 8.9 97 462-560 11-120 (161)
245 2wpv_A GET4, UPF0363 protein Y 92.3 4.4 0.00015 37.9 15.0 106 57-162 61-177 (312)
246 3o48_A Mitochondria fission 1 91.5 1.7 5.8E-05 34.3 9.5 74 530-603 36-115 (134)
247 1y8m_A FIS1; mitochondria, unk 91.2 4.5 0.00016 32.4 11.8 69 563-631 36-108 (144)
248 4b4t_P 26S proteasome regulato 90.0 7.2 0.00025 38.9 15.3 47 412-458 30-81 (445)
249 3ffl_A Anaphase-promoting comp 89.5 2.3 8E-05 35.1 9.1 26 601-626 123-148 (167)
250 4fhn_B Nucleoporin NUP120; pro 89.4 9.1 0.00031 43.7 17.4 186 403-595 817-1050(1139)
251 3ltm_A Alpha-REP4; protein eng 89.0 11 0.00037 32.8 18.4 122 35-164 19-140 (211)
252 3txn_A 26S proteasome regulato 88.6 17 0.00057 35.4 16.1 56 505-560 105-165 (394)
253 2ff4_A Probable regulatory pro 87.9 1.1 3.8E-05 44.0 7.6 56 572-627 177-232 (388)
254 2wpv_A GET4, UPF0363 protein Y 87.1 19 0.00066 33.5 19.2 168 435-629 35-217 (312)
255 4gns_B Protein CSD3, chitin bi 86.4 2 7E-05 45.7 8.9 123 186-311 253-398 (754)
256 3lpz_A GET4 (YOR164C homolog); 85.2 25 0.00087 33.0 23.1 166 435-628 37-215 (336)
257 3ltj_A Alpharep-4; protein eng 84.9 18 0.00061 31.1 17.8 18 118-135 89-106 (201)
258 3txn_A 26S proteasome regulato 84.1 32 0.0011 33.4 25.0 239 368-649 104-360 (394)
259 3ltm_A Alpha-REP4; protein eng 83.9 21 0.0007 31.0 17.6 105 217-326 94-199 (211)
260 2uwj_G Type III export protein 83.8 5.5 0.00019 29.3 7.2 51 159-212 48-98 (115)
261 1v54_E Cytochrome C oxidase po 83.7 6.1 0.00021 29.3 7.5 49 65-113 26-74 (109)
262 2ff4_A Probable regulatory pro 83.5 7.8 0.00027 37.9 11.1 69 468-537 175-248 (388)
263 1v54_E Cytochrome C oxidase po 83.4 6.4 0.00022 29.2 7.5 58 482-541 28-86 (109)
264 3ffl_A Anaphase-promoting comp 83.1 6.2 0.00021 32.6 8.4 22 540-561 128-149 (167)
265 1zbp_A Hypothetical protein VP 82.8 1.3 4.4E-05 40.0 4.6 58 542-599 5-64 (273)
266 4fhn_B Nucleoporin NUP120; pro 82.6 44 0.0015 38.1 18.4 53 124-177 817-869 (1139)
267 3ltj_A Alpharep-4; protein eng 81.8 24 0.00082 30.2 17.4 104 217-325 89-193 (201)
268 4b4t_P 26S proteasome regulato 80.1 50 0.0017 32.8 22.2 184 377-560 30-244 (445)
269 1oyz_A Hypothetical protein YI 77.5 42 0.0014 30.6 20.6 19 217-235 205-223 (280)
270 1zbp_A Hypothetical protein VP 77.2 29 0.00098 31.4 11.3 121 473-601 6-135 (273)
271 3esl_A Checkpoint serine/threo 76.3 21 0.00071 30.6 9.7 53 547-599 92-148 (202)
272 2uwj_G Type III export protein 75.2 22 0.00076 26.2 9.8 86 413-503 21-106 (115)
273 2p58_C Putative type III secre 74.2 24 0.00082 26.1 10.1 86 413-503 22-107 (116)
274 2p58_C Putative type III secre 73.4 25 0.00086 26.0 9.0 51 159-212 49-99 (116)
275 2y69_E Cytochrome C oxidase su 73.0 17 0.00059 28.6 7.5 58 482-541 71-129 (152)
276 1wdy_A 2-5A-dependent ribonucl 72.7 55 0.0019 29.6 14.2 49 229-277 190-240 (285)
277 2y69_E Cytochrome C oxidase su 68.7 31 0.0011 27.2 8.1 62 379-441 69-130 (152)
278 2wh0_Q Pkcev3, protein kinase 68.0 3.1 0.00011 21.4 1.7 18 663-680 12-29 (31)
279 4a1g_A Mitotic checkpoint seri 66.0 40 0.0014 27.4 8.8 47 585-631 84-132 (152)
280 2qx5_A Nucleoporin NIC96; mRNA 65.9 1.3E+02 0.0046 31.4 15.4 81 438-526 299-383 (661)
281 3esl_A Checkpoint serine/threo 64.9 35 0.0012 29.2 8.6 58 328-397 92-149 (202)
282 3kea_A K1L; tropism, ANK repea 64.5 67 0.0023 29.4 11.8 180 60-254 39-224 (285)
283 4a1g_A Mitotic checkpoint seri 63.6 58 0.002 26.4 9.3 53 332-396 82-134 (152)
284 3eiq_C Programmed cell death p 60.8 15 0.00051 35.1 6.3 25 319-343 221-245 (358)
285 4b4t_R RPN7, 26S proteasome re 60.4 47 0.0016 32.8 10.3 95 466-560 133-234 (429)
286 1wdy_A 2-5A-dependent ribonucl 59.5 65 0.0022 29.0 10.8 206 23-241 7-239 (285)
287 4b4t_R RPN7, 26S proteasome re 59.0 45 0.0015 33.0 9.9 106 434-539 132-248 (429)
288 1k1a_A B-cell lymphoma 3-encod 57.9 95 0.0033 27.0 11.9 82 59-145 16-102 (241)
289 4b4t_S RPN3, 26S proteasome re 57.0 36 0.0012 34.2 8.5 25 536-560 233-257 (523)
290 1n11_A Ankyrin; clathrin, BAND 56.6 1.3E+02 0.0044 29.5 13.1 18 26-43 19-36 (437)
291 1oyz_A Hypothetical protein YI 55.6 1.2E+02 0.0041 27.4 20.1 18 251-268 140-157 (280)
292 2zu6_B Programmed cell death p 54.2 48 0.0016 30.8 8.5 195 21-215 6-235 (307)
293 3l6a_A Eukaryotic translation 53.8 1.2E+02 0.0041 29.0 11.4 63 20-82 14-81 (364)
294 2wvi_A Mitotic checkpoint seri 53.7 89 0.003 25.7 9.0 69 531-599 60-129 (164)
295 1n11_A Ankyrin; clathrin, BAND 48.6 2E+02 0.0069 28.0 15.2 204 124-340 82-300 (437)
296 3jxi_A Vanilloid receptor-rela 47.7 55 0.0019 29.2 8.0 52 59-110 12-72 (260)
297 2nsz_A Programmed cell death p 47.5 46 0.0016 26.1 6.3 61 21-81 10-75 (129)
298 3kae_A CDC27, possible protein 45.4 1.3E+02 0.0044 24.9 9.5 83 544-629 43-143 (242)
299 1ya0_A SMG-7 transcript varian 43.4 58 0.002 32.8 7.7 46 578-623 164-209 (497)
300 2zu6_B Programmed cell death p 43.1 1.1E+02 0.0037 28.5 9.0 59 288-346 170-233 (307)
301 1ug3_A EIF4GI, eukaryotic prot 42.4 87 0.003 29.6 8.5 60 155-214 16-78 (339)
302 3bqo_A Telomeric repeat-bindin 41.5 1.6E+02 0.0054 25.0 8.5 60 550-609 94-160 (211)
303 2d2s_A Exocyst complex compone 40.1 76 0.0026 28.1 7.2 90 53-145 22-117 (235)
304 2ion_A PDCD4, programmed cell 39.7 41 0.0014 27.4 4.9 61 21-81 12-77 (152)
305 4b4t_S RPN3, 26S proteasome re 39.3 59 0.002 32.7 6.9 64 566-631 231-301 (523)
306 3eiq_C Programmed cell death p 39.2 2.6E+02 0.0088 26.6 15.2 59 288-346 221-284 (358)
307 3jxi_A Vanilloid receptor-rela 38.7 44 0.0015 29.9 5.8 54 92-145 10-72 (260)
308 4aez_C MAD3, mitotic spindle c 37.9 1.7E+02 0.0057 25.5 8.6 53 481-533 131-184 (223)
309 1k1a_A B-cell lymphoma 3-encod 35.8 1.8E+02 0.0061 25.2 9.4 55 91-145 13-69 (241)
310 3kea_A K1L; tropism, ANK repea 35.7 1.5E+02 0.0052 26.9 9.0 48 94-145 38-85 (285)
311 2ion_A PDCD4, programmed cell 35.3 54 0.0019 26.7 5.0 61 154-214 13-77 (152)
312 4gq2_M Nucleoporin NUP120; bet 35.1 2.2E+02 0.0075 31.6 11.4 47 567-613 898-949 (950)
313 2pnn_A Transient receptor pote 35.0 1.3E+02 0.0045 26.9 8.5 20 60-79 21-40 (273)
314 2fu4_A Ferric uptake regulatio 34.8 1.1E+02 0.0036 21.4 6.1 59 74-133 7-66 (83)
315 3ygs_P Procaspase 9; apoptosis 34.7 31 0.0011 25.4 3.2 36 33-68 52-87 (97)
316 4aez_C MAD3, mitotic spindle c 34.1 1.3E+02 0.0045 26.2 7.4 53 332-396 131-183 (223)
317 3l6a_A Eukaryotic translation 33.4 54 0.0019 31.4 5.5 24 123-146 16-39 (364)
318 2wvi_A Mitotic checkpoint seri 32.2 2.1E+02 0.0072 23.5 10.8 54 481-534 77-131 (164)
319 1oai_A Nuclear RNA export fact 31.7 56 0.0019 21.4 3.6 28 192-219 30-57 (59)
320 3hra_A Ankyrin repeat family p 31.2 2.3E+02 0.0078 23.5 10.1 14 30-43 14-27 (201)
321 2etb_A Transient receptor pote 30.9 59 0.002 29.0 5.2 57 56-112 6-71 (256)
322 2r9g_A AAA ATPase, central reg 30.0 2.6E+02 0.0088 23.8 8.8 45 367-412 15-62 (204)
323 3eu9_A Huntingtin-interacting 29.2 2.7E+02 0.0093 23.8 12.0 107 28-144 16-131 (240)
324 3ygs_P Procaspase 9; apoptosis 28.8 81 0.0028 23.2 4.6 28 134-161 52-79 (97)
325 3qil_A Clathrin heavy chain 1; 28.5 26 0.0009 26.9 1.8 71 27-105 15-85 (125)
326 2fu4_A Ferric uptake regulatio 28.1 1.5E+02 0.0052 20.5 6.4 61 488-549 6-67 (83)
327 3hra_A Ankyrin repeat family p 27.8 2.6E+02 0.0089 23.2 10.8 81 59-144 12-94 (201)
328 3bu8_A Telomeric repeat-bindin 26.8 2.1E+02 0.0072 24.7 7.1 27 541-567 121-148 (235)
329 2xig_A Ferric uptake regulatio 26.4 2.4E+02 0.0083 22.6 7.6 61 206-268 16-76 (150)
330 3utm_A Tankyrase-1; tankyrase, 26.3 3.8E+02 0.013 24.6 15.5 113 24-146 27-148 (351)
331 2fe3_A Peroxide operon regulat 25.9 1.4E+02 0.0047 23.9 6.0 35 99-133 36-70 (145)
332 3ljn_A Hypothetical protein; a 25.5 2.6E+02 0.0088 26.3 9.1 18 261-278 249-266 (364)
333 2xig_A Ferric uptake regulatio 25.0 2.2E+02 0.0076 22.8 7.1 60 488-548 16-75 (150)
334 3b7b_A Euchromatic histone-lys 24.6 3.3E+02 0.011 23.3 9.5 197 104-312 24-235 (237)
335 2fe3_A Peroxide operon regulat 24.4 2.3E+02 0.0078 22.5 7.0 60 206-267 11-70 (145)
336 2r9g_A AAA ATPase, central reg 23.9 3.4E+02 0.012 23.1 9.7 38 475-513 25-62 (204)
337 1ug3_A EIF4GI, eukaryotic prot 23.8 2.2E+02 0.0075 26.8 7.9 26 123-148 15-40 (339)
338 4gq2_M Nucleoporin NUP120; bet 23.7 5.7E+02 0.019 28.3 12.2 127 321-478 816-950 (950)
339 2w57_A Ferric uptake regulatio 23.6 1.9E+02 0.0065 23.2 6.4 61 73-134 6-67 (150)
340 2d2s_A Exocyst complex compone 23.5 3E+02 0.01 24.2 8.1 89 469-560 23-117 (235)
341 2cfu_A SDSA1; SDS-hydrolase, l 23.0 1.4E+02 0.0047 31.4 6.8 66 550-618 436-501 (658)
342 2o03_A Probable zinc uptake re 22.8 1.3E+02 0.0046 23.4 5.2 45 54-98 15-59 (131)
343 3aji_A 26S proteasome non-ATPa 22.6 3E+02 0.01 23.5 8.3 20 24-43 9-28 (231)
344 3ctd_A Putative ATPase, AAA fa 22.5 3.7E+02 0.013 23.1 8.3 89 369-458 38-134 (213)
345 2qx5_A Nucleoporin NIC96; mRNA 22.3 6.9E+02 0.023 26.1 16.0 82 55-147 300-384 (661)
346 2w57_A Ferric uptake regulatio 22.2 2.5E+02 0.0085 22.5 6.8 61 206-268 6-67 (150)
347 1mzb_A Ferric uptake regulatio 22.0 2.2E+02 0.0076 22.3 6.4 57 208-266 9-66 (136)
348 3mwm_A ZUR, putative metal upt 20.8 1.3E+02 0.0044 23.8 4.8 44 54-97 18-61 (139)
349 3bge_A Predicted ATPase; struc 20.5 4E+02 0.014 22.7 8.5 45 368-412 9-56 (201)
350 3bge_A Predicted ATPase; struc 20.4 4E+02 0.014 22.6 8.4 39 475-513 18-56 (201)
351 2rfa_A Transient receptor pote 20.2 3E+02 0.01 23.5 7.8 185 89-278 5-219 (232)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-40 Score=359.57 Aligned_cols=517 Identities=8% Similarity=-0.045 Sum_probs=324.0
Q ss_pred hhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHH
Q 005732 28 CGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIH 107 (680)
Q Consensus 28 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 107 (680)
+.+.|.+..+...|..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44556667777777777777778888888888888888888888888774 3567777777777777777777777777
Q ss_pred HHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHH
Q 005732 108 CLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKL 187 (680)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 187 (680)
+.+... +++..+++.++.+|.+.|++++|.++|+++...+.. ..++.+.+.. +.-...+..+|+.+
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHH
Confidence 766432 556667777777777777777777777753322100 0001011110 01112356788888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhH--HHH-HHHHHHhCCCCCchHHHHHHHHhh
Q 005732 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEG--KVV-HGLLIKCGFEFDESIGGALIEFYC 264 (680)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~ 264 (680)
+..+.+.|+ +++|.++|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+..+...+++.++..|.
T Consensus 207 ~~~~~~~g~-~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 207 GQVYTNLSN-FDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 899999888 89999999998876532 445555555444333222211 111 344444444445556666677777
Q ss_pred cCCCHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 265 GCEAFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
+.|++++|.++|+++. +++...++.++.+|.+.|++++|..+|+++ .
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------------------~ 332 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI-------------------------------L 332 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------H
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------------------H
Confidence 7777777777777766 244444455555555555555555555544 4
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
+.+ +.+..+++.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+
T Consensus 333 ~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 333 EID--------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHC--------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcC--------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333 3344445555555555555555555555554321 2234444445555555555555555555
Q ss_pred HHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. ..+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 554433 3445566666666666666666666666543 2456677778888888888888888888887743 2357
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSY----GVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGA 571 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ 571 (680)
.+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 78888888888888888888888888754 55666 678888888888888888888888876 23 347888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
++.+|...|++++|...++++++++|+++.++..++.+|.
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999888888887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-37 Score=337.05 Aligned_cols=479 Identities=11% Similarity=0.015 Sum_probs=380.6
Q ss_pred HHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCC--CCCeeeHHHHHHHHHhCCCChHHHHHHHH
Q 005732 129 YANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMP--KKDVVVWTKLISGYAKSVDGCEKALKLFR 206 (680)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 206 (680)
+...|....+...+..+..++...|+.++..+.+.|++++|+.+|+++. .|+..++..++..+.+.|+ +++|..+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 141 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGD-YARAKCLLT 141 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCc-HHHHHHHHH
Confidence 4566777777788887777778888888888888888888888888775 4666778888888888888 888888888
Q ss_pred HHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh---------------CCCCCchHHHHHHHHhhcCCCHHH
Q 005732 207 WMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC---------------GFEFDESIGGALIEFYCGCEAFDG 271 (680)
Q Consensus 207 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~ 271 (680)
++... |++..+++.++.++.+.|++++|..+++.+... +.+.+..+++.++.+|.+.|++++
T Consensus 142 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 142 KEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 77543 347788888888888888888888888742211 123346778888888888888888
Q ss_pred HHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHH---HHHhcc----CChhHHHHHHHHHhccCChhhHHHHHhhc
Q 005732 272 AMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELI---FNRLTE----ANSISYNSMIKGYAVYGQVDDSKRLFEKM 341 (680)
Q Consensus 272 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 341 (680)
|.++|+++. +.+...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 888888876 44444444444433333222221110 222222 23345666678888999999999999999
Q ss_pred CcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 005732 342 PHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLH 421 (680)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 421 (680)
.+. +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++
T Consensus 299 ~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 299 NGL---------------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp TTG---------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcC---------------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 874 4789999999999999999999999999999865 347788999999999999999999999
Q ss_pred HHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005732 422 AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN 498 (680)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 498 (680)
+.+.+.. +.+..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+
T Consensus 363 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 440 (597)
T 2xpi_A 363 NDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT 440 (597)
T ss_dssp HHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 9999765 6788999999999999999999999999875 3568899999999999999999999999999864 336
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELD--AVVW 569 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~ 569 (680)
..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 8899999999999999999999999999764 347889999999999999999999999987 44777 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..++.+|.+.|++++|+..++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.8e-27 Score=238.88 Aligned_cols=367 Identities=12% Similarity=0.066 Sum_probs=257.7
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAEL 305 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 305 (680)
.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... |.+...+..++.++.+.|++++|..
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 33444444444444443332 1122333333344444444444444444333 3333344445555555555555555
Q ss_pred HHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHH
Q 005732 306 IFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKA 382 (680)
Q Consensus 306 ~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 382 (680)
.|+++.. |+ ..+|..+..++.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHccCHHHH
Confidence 5555444 32 3356666666666666666666666666544 44555666667777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 005732 383 LQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS- 461 (680)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (680)
.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776642 2234566677777777777777777777777665 55566777788888888888888888876652
Q ss_pred --CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHH
Q 005732 462 --PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYT 538 (680)
Q Consensus 462 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (680)
.+..++..+..++...|++++|+..|+++.+. .| +..++..+...+.+.|++++|.+.++++.+.. +.+..++.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 45778888999999999999999999999984 45 46788889999999999999999999998654 45788899
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
.+...+.+.|++++|.+.++++ ...| +..++..++..+...|++++|...++++++..|+.+.++..++.++...|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999987 4445 588899999999999999999999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.1e-26 Score=234.14 Aligned_cols=351 Identities=16% Similarity=0.106 Sum_probs=312.4
Q ss_pred HHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChh
Q 005732 259 LIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~ 332 (680)
+...+.+.|++++|.+.++.+. |.+...+..+...+...|++++|...++.... .+..+|..+...+.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566778999999999999876 66667777888889999999999999998877 45678999999999999999
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhccc
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR-STFSVLFHACSCL 411 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 411 (680)
+|...|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...
T Consensus 85 ~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 85 EAIEHYRHALRLK--------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHc
Confidence 9999999998765 567788999999999999999999999999885 3554 4567778888899
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+ .+...|..+...+...|++++|+..++
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999876 66788899999999999999999999998863 457789999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCC
Q 005732 489 IMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELD 565 (680)
Q Consensus 489 ~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~ 565 (680)
+..+. .|+ ..++..+...+...|++++|.+.++++.+.+ +.+...+..++..+.+.|++++|.+.++++ . .+.+
T Consensus 228 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 228 RALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 99884 454 7888999999999999999999999999764 335778999999999999999999999988 2 4557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++..++..+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999999864
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.4e-27 Score=242.37 Aligned_cols=203 Identities=14% Similarity=0.207 Sum_probs=177.1
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERN-PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC 410 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 410 (680)
..+..+.+++.+.+. ... ...++.+|++|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 7 s~~e~L~~~~~~k~~-------------~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 7 SPSENLSRKAKKKAI-------------QQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp ------------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhcc-------------cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Confidence 344555666666654 233 346888999999999999999999999999999999999999999987
Q ss_pred cCC---------hHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHc
Q 005732 411 LGS---------LQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS----SPNVAAWTALMNGYSHH 477 (680)
Q Consensus 411 ~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~ 477 (680)
.+. .+.|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.
T Consensus 74 ~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 74 AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 654 68899999999999999999999999999999999999999999986 49999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 478 GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
|+.++|.++|++|.+.|+.||..||+.|+.+|++.|++++|.+++++|.+.|..|+..+|+.++..+...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.6e-26 Score=238.26 Aligned_cols=189 Identities=15% Similarity=0.073 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCcc
Q 005732 49 VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNS---------LIDGKQIHCLVLKSGYECFE 119 (680)
Q Consensus 49 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 119 (680)
...++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++.|.+++++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999987654 67899999999999999999
Q ss_pred hhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChH
Q 005732 120 FVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCE 199 (680)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 199 (680)
.+|++||.+|++.|++++|.++|++|.+.+ ..||..+|+.+|.+|++.|+ ++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~-~~ 157 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGD-AD 157 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCC-HH
Confidence 999999999999999999999999997655 68999999999999999999 99
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcC
Q 005732 200 KALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGC 266 (680)
Q Consensus 200 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (680)
+|.++|++|.+.|+.| |..||++||.+|++.|+.++|.++++.|.+.|..|+..||+.++..|+..
T Consensus 158 ~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 158 KAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999997 99999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-22 Score=213.35 Aligned_cols=431 Identities=9% Similarity=-0.033 Sum_probs=297.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
+......+.+.|+ +++|+..|+++.+.+ | +..+|..+..++...|++++|...++.+++.+ +.+...+..+..+|
T Consensus 9 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKK-YDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3344455566666 677777777776654 3 66666667777777777777777777766654 33455666666677
Q ss_pred hcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHH---HHHhccCChhh
Q 005732 264 CGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMI---KGYAVYGQVDD 333 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll---~~~~~~~~~~~ 333 (680)
...|++++|...|+.+. +++.......+..+........+...+..+.. |+...+..-. ...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 77777777777766655 33333333333333332222222222211111 1100000000 00000111111
Q ss_pred HHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCCC--------C
Q 005732 334 SKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ---NNLHEKALQLYMTMRK-----LAIDR--------T 397 (680)
Q Consensus 334 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~p--------~ 397 (680)
+...+......... ..+ ..+.+...+......+.. .|++++|...|+++.+ ..-.| +
T Consensus 164 ~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 164 MASFFGIFKPELTF------ANY-DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp HHHHHTTSCCCCCC------SSC-CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHHhhcCHHHHH------HHh-cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 11111111110000 000 012335556566665665 8999999999999987 32122 2
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHH
Q 005732 398 RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGY 474 (680)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 474 (680)
..++..+...+...|++++|...++.+.+.... ...+..+...+...|++++|.+.++++.+ .+...|..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 446777888899999999999999999988633 88889999999999999999999988764 4677899999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
...|++++|+..++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999985422 46788889999999999999999999999654 335778889999999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005732 555 EFIKDM----PIELD----AVVWGALLSACWF---WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 555 ~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
+.++++ +..++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999987 22222 4488899999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q 005732 624 KRLTHLE 630 (680)
Q Consensus 624 ~~~~~~~ 630 (680)
++..+..
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9998754
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.9e-22 Score=211.49 Aligned_cols=424 Identities=10% Similarity=0.001 Sum_probs=304.3
Q ss_pred eeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHH
Q 005732 182 VVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIE 261 (680)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 261 (680)
..|..+...+.+.|+ +++|++.|+++.+.. |.+..++..+..++...|++++|...++.+++.+ +.+...+..+..
T Consensus 26 ~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKN-FNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345556666777777 777777777777655 3366777777777777788888887777777765 345667777777
Q ss_pred HhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C----ChhHHHHHHHHHhccCChhhHH
Q 005732 262 FYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE--A----NSISYNSMIKGYAVYGQVDDSK 335 (680)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~ll~~~~~~~~~~~a~ 335 (680)
++...|++++|...|+.+. ..+......+..+...+....|...++.+.. | ........+..+....+.+.+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 7777888888887776443 1111112234455555666777777777755 1 1112233444555566666666
Q ss_pred HHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCh--------h
Q 005732 336 RLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ--------NNLHEKALQLYMTMRKLAIDRTR--------S 399 (680)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~--------~ 399 (680)
..+......+ +........+...+.. .|++++|..+|+++.+.. |+. .
T Consensus 181 ~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 244 (537)
T 3fp2_A 181 SSVNTSSNYD--------------TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAAL 244 (537)
T ss_dssp HTSCCCCSSC--------------SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHhhccccc--------------cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHH
Confidence 6666555433 1222233333333222 247889999999988743 432 2
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSH 476 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 476 (680)
++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|.+.|+++.+ .+..+|..+...+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 46666677888999999999999998875 3377888889999999999999999988763 567889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
.|++++|+..++++.+... .+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 323 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999988432 236778888899999999999999999998654 34567888899999999999999999
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchH
Q 005732 557 IKDM----P----IELDAVVWGALLSACWFW----------MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 557 ~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (680)
++++ + .......+......+... |++++|...++++++.+|+++.++..++.+|...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9886 1 111233345556667777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 005732 619 KMDIRKRLTHLE 630 (680)
Q Consensus 619 A~~~~~~~~~~~ 630 (680)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.2e-22 Score=207.68 Aligned_cols=323 Identities=11% Similarity=0.078 Sum_probs=246.3
Q ss_pred ccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccC
Q 005732 283 CLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEM 359 (680)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (680)
+...+..++..+.+.|++++|...|+++.. .+..++..+..++...|++++|...|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 333445555556666666666666665554 345566666667777777777777777766654
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----hhHHHH------------HHHhcccCChHHHHHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR----STFSVL------------FHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~ 423 (680)
+.+..++..++.+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...++.
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455667777777777777777777777777663 3332 333333 3447788899999999998
Q ss_pred HHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H
Q 005732 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-A 499 (680)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~ 499 (680)
+.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+ ..|+ .
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChH
Confidence 88775 66788889999999999999999999988763 5788999999999999999999999999987 4455 3
Q ss_pred HHHHHH------------HHHHhccCCHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 500 ATFVGV------------LSACVRAGLVNEGMKIFRSMKSYGVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 500 ~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
..+..+ ...+.+.|++++|..+|+++.+.... + ...+..++.++.+.|++++|++.++++ ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444443 77889999999999999999975322 2 347888899999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH------------HHhcC-----CchHHHHHHH
Q 005732 563 EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI------------YAVLG-----KWGKKMDIRK 624 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~ 624 (680)
.| +...+..++.+|...|++++|...++++++++|+++..+..++.+ |...| +.+++.+.++
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHH
Confidence 44 789999999999999999999999999999999999999998844 44555 5566677777
Q ss_pred H
Q 005732 625 R 625 (680)
Q Consensus 625 ~ 625 (680)
+
T Consensus 405 ~ 405 (450)
T 2y4t_A 405 K 405 (450)
T ss_dssp H
T ss_pred H
Confidence 6
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-22 Score=213.18 Aligned_cols=282 Identities=9% Similarity=-0.072 Sum_probs=229.2
Q ss_pred hhHHHHHHHHHhc---cCChhhHHHHHhhcCc-----C--CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHH
Q 005732 315 SISYNSMIKGYAV---YGQVDDSKRLFEKMPH-----R--SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQ 384 (680)
Q Consensus 315 ~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 384 (680)
...+......+.. .|++++|...|+++.+ . +...... .+.+..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------KEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc-------ChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344444444444 8899999999988876 3 1000000 02345678889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---C
Q 005732 385 LYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---S 461 (680)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 461 (680)
.|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++. .
T Consensus 259 ~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 259 DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 999998865 337788889999999999999999999999876 5677889999999999999999999998875 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEH 536 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 536 (680)
.+...+..+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|...++++...... ++ ...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 456788999999999999999999999998853 224678888999999999999999999999853222 12 338
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 537 YTCVVDLLGR---SGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 537 ~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
+..+...+.. .|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++..|+++..+..+.
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 8899999999 99999999999987 33 346888899999999999999999999999999999877766553
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.1e-21 Score=203.67 Aligned_cols=346 Identities=9% Similarity=0.005 Sum_probs=244.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhcc
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVY 328 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 328 (680)
.+..+...+.+.|++++|..+|+.+. +.+...+..++.++...|++++|...|+++.. .+..++..+...+.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 33334444444444444444444333 33333344444444444555555555544444 2334555566666666
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh---hHHHHH------------HHHHHhCCChHHHHHHHHHHHHCC
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP---VTWNSM------------ISGYVQNNLHEKALQLYMTMRKLA 393 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~ 393 (680)
|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|+..|+++.+..
T Consensus 108 g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSN--------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp TCHHHHHHHHHHHHTSC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC--------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666665543 2333 344333 555889999999999999998753
Q ss_pred CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHH
Q 005732 394 IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTAL 470 (680)
Q Consensus 394 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 470 (680)
+.+...+..+...+...|++++|...++.+.+.. +.+..++..++.+|...|++++|.+.|+++.+ .+...+..+
T Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 174 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 3467788999999999999999999999998875 66788999999999999999999999998763 344455544
Q ss_pred ------------HHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 471 ------------MNGYSHHGLGSEAVLLFEIMLEQDIVPN-----AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 471 ------------~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
...+...|++++|+..|+++.+ ..|+ ...+..+...+.+.|++++|...++++.... +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 7889999999999999999998 4455 3478888899999999999999999998653 346
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSA------------CWFWM-----NMEVGERAAQK-MF 593 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~ 593 (680)
...|..+..+|...|++++|.+.++++ ...| +...+..+..+ |...| +.+++.+.+++ ++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l 408 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL 408 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 889999999999999999999999988 5566 46666666633 22233 66778888886 78
Q ss_pred cCCCCCCc----------hHHHHHHHHHhcCCchHH
Q 005732 594 GLDKKPIS----------AYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 594 ~~~p~~~~----------~~~~l~~~~~~~g~~~~A 619 (680)
+..|+... .+..+..+|...|+.+.+
T Consensus 409 ~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 409 QWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88887522 344555566666555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.8e-21 Score=203.83 Aligned_cols=427 Identities=12% Similarity=0.030 Sum_probs=316.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCC---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 005732 152 LWSLMLVGYVQCNLMSDAFDVFIKMP---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRAC 228 (680)
Q Consensus 152 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 228 (680)
.|..+...+.+.|++++|+..|+++. +.+...|..+...+.+.|+ +++|++.|+++.+.+ |.+..++..+..++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK--PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC--CchHHHHHHHHHHH
Confidence 34555566666666666666666544 3356678888888888888 899999999888866 33778888888888
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCC------CccchhhHHHHHHHhcCCHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLEN------PCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~ 302 (680)
...|++++|...++ .... .|+ .....+..+...+....|...++.+.. +........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 89999999988886 3322 222 122234455555666788888887751 122223566677777777777
Q ss_pred HHHHHHHhccCChh---HHHHHHHHHhc--------cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh-------h
Q 005732 303 AELIFNRLTEANSI---SYNSMIKGYAV--------YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP-------V 364 (680)
Q Consensus 303 a~~~~~~~~~~~~~---~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~ 364 (680)
+...+......+.. ....+...+.. .|++++|..+++++.+.+ +.+. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~ 244 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--------------TVDDPLRENAAL 244 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--------------CCcchhhHHHHH
Confidence 77666665553322 23333333322 247899999999998866 3443 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 5667778889999999999999999885 4667888999999999999999999999999876 667888999999999
Q ss_pred hcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005732 445 RCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
..|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|.+.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998763 456789999999999999999999999999853 22467888889999999999999999
Q ss_pred HHHHHhcCCC-----CChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 005732 522 FRSMKSYGVV-----PTLEHYTCVVDLLGRS----------GHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEV 584 (680)
Q Consensus 522 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 584 (680)
++++.+.... .....+..+...+.+. |++++|.+.++++ .. +.+...+..++..+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9998843211 1122244556677777 9999999999987 33 3468889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCchHH
Q 005732 585 GERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~ 604 (680)
|...+++++++.|+++....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999865544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.6e-19 Score=179.48 Aligned_cols=297 Identities=10% Similarity=0.011 Sum_probs=227.1
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005732 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAI 394 (680)
Q Consensus 315 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 394 (680)
...+..+...+...|++++|...|+++.+.+ +.+..++..+..++...|++++|+..|+++.+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK- 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 3455666667777777777777777776654 5567777777777888888888888888777643
Q ss_pred CCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCC---chHhHHHHH------------HHHHHhcCChHHHHHHHhcC
Q 005732 395 DRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE---SNVYVGTSL------------VDMYSRCGSINDAQASFSSI 459 (680)
Q Consensus 395 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~ 459 (680)
+.+...+..+...+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.+.++++
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2245667777777777888888888888777764 3 344444444 57788889999999998877
Q ss_pred CC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhH
Q 005732 460 SS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEH 536 (680)
Q Consensus 460 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (680)
.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.... +...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 224 (359)
T 3ieg_A 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 224 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHH
Confidence 53 567788888889999999999999999988753 235778888888889999999999999988865422 3333
Q ss_pred HH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 537 YT------------CVVDLLGRSGHLHEAEEFIKDM-PIELD-A----VVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 537 ~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
+. .+...+.+.|++++|.+.++++ ...|+ . ..+..++.++...|++++|...++++++.+|+
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 32 2366788999999999999987 33343 3 23555777888999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++..+..++.++...|++++|.+.+++..+.
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998764
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.6e-16 Score=173.09 Aligned_cols=275 Identities=15% Similarity=0.171 Sum_probs=207.9
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcc---------cCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP---------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
+...+...|.+++|..+|++....+. ..+.++.... ....+..+|..+..++...|++++|++.|.+.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 44555667777777777777643211 1111221000 12345778888999999999999999998653
Q ss_pred CCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHH
Q 005732 392 LAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALM 471 (680)
Q Consensus 392 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 471 (680)
-|...|..++.+|.+.|+++++.+++...++.. +++...+.++.+|++.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 466778889999999999999999998887764 33333445888899988888655443 356667777888
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|...|++.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHH
Confidence 8999999999999999884 378888999999999999999988763 5678888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc--CCchHHHHHHH
Q 005732 552 EAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL--GKWGKKMDIRK 624 (680)
Q Consensus 552 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 624 (680)
.|...... +..++..+..++..|.+.|.+++|+.++++++.++|.+...+..++.+|.+. ++..|+.++|.
T Consensus 1268 LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99887765 3456667778888999999999999999999999999988898888887764 45666666654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=7.4e-19 Score=176.17 Aligned_cols=306 Identities=11% Similarity=0.041 Sum_probs=213.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
..+...+...|++++|...|+++.. .+..++..+...+...|++++|...++++.+.+ +.+..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~ 72 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------------MDFTA 72 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------CCcch
Confidence 3344444455555555555555444 223455555555555666666666665555443 34455
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---C-hhhHHHH------------HHHhcccCChHHHHHHHHHHHhcC
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDR---T-RSTFSVL------------FHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.+..+...+...|++++|...|+++.+. .| + ...+..+ ...+...|++++|...++.+.+..
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5666666666666666666666666553 23 1 2222222 456677788888888888777765
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH-
Q 005732 429 FESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV- 503 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~- 503 (680)
+.+...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (359)
T 3ieg_A 151 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 227 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHH
Confidence 55677778888888888888888888877653 46778888888888899999999999888874 344 33222
Q ss_pred -----------HHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 005732 504 -----------GVLSACVRAGLVNEGMKIFRSMKSYGVVPTL----EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DA 566 (680)
Q Consensus 504 -----------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 566 (680)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|.+.+++. ...| ++
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 2356688899999999999999865433 22 23456788899999999999999987 3344 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
..+..++..+...|++++|...++++++.+|+++..+..+..+....
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988888887776543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=8.9e-16 Score=167.30 Aligned_cols=528 Identities=11% Similarity=0.082 Sum_probs=339.0
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCC-CC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMP-IR-----TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC 94 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~ 94 (680)
-...+.+|...|.+.+|.++++++. .| +....+.++.+-.+. +..+..+..++.... + ...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 3467777778888888888887764 22 335566666666665 445555555554421 1 23355666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhc
Q 005732 95 AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFI 174 (680)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 174 (680)
...|.+++|..+|+... -.....+.+ +-..|++++|.++.++. .++.+|..+.+++...|++++|++.|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77888888888888752 111111222 22677888888888876 346678888888888888888888887
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005732 175 KMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDES 254 (680)
Q Consensus 175 ~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (680)
+. .|...|..++..+.+.|+ +++|.+.|...++... ++...+.++.+|++.++++...... + .++..
T Consensus 1130 KA--dD~say~eVa~~~~~lGk-yEEAIeyL~mArk~~~---e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGN-WEELVKYLQMARKKAR---ESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcc---cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 64 566677778888888888 8888888887776552 3333345788888888777543332 1 34555
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
.+..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .+..+|..+..+|...|++..|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence 6667888888888888888888875 46788888888888888888888877 4557888888888888888888
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc--cC
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC--LG 412 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~ 412 (680)
......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...+++ .+
T Consensus 1270 ~~cgl~I------------------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1270 QMCGLHI------------------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHhh------------------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 8776643 2355667788889999999999999997776433 2233345444444443 44
Q ss_pred ChHHHHHHHHHHHhcCCC------chHhHHHHHHHHHHhcCChHHHHHHHhcC-------------C--CCCHHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFE------SNVYVGTSLVDMYSRCGSINDAQASFSSI-------------S--SPNVAAWTALM 471 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~--~~~~~~~~~l~ 471 (680)
+..++.+.|..-. +++ -+...|..++..|.+.|+++.|....-+- . ..++..|...+
T Consensus 1331 klmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai 1408 (1630)
T 1xi4_A 1331 KMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHH
Confidence 4445555544322 222 25667888888999999999888433222 1 14566666666
Q ss_pred HHHHHcC---------------ChhHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHhccCCHHHHHH---
Q 005732 472 NGYSHHG---------------LGSEAVLLFEIMLEQDIVPNAATFV-------------GVLSACVRAGLVNEGMK--- 520 (680)
Q Consensus 472 ~~~~~~~---------------~~~~A~~~~~~m~~~~~~p~~~~~~-------------~ll~~~~~~g~~~~A~~--- 520 (680)
..|...+ +++++.++|.+. |.-|-...|. .+...+....+++.-..
T Consensus 1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~ 1485 (1630)
T 1xi4_A 1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 1485 (1630)
T ss_pred HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHh
Confidence 6666555 566666655421 1111111111 11122222222221111
Q ss_pred ---------HHHHHHhcCCCCChhHHHHHHH-HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005732 521 ---------IFRSMKSYGVVPTLEHYTCVVD-LLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQ 590 (680)
Q Consensus 521 ---------~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 590 (680)
+-.++. +.+..-+..+.. .|.+.|+|..|.+++++.+. |.-.+.....+|+.+.+++++.
T Consensus 1486 ~~~nfd~~~La~~le----kheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~ 1555 (1630)
T 1xi4_A 1486 AYDNFDNISLAQRLE----KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQ 1555 (1630)
T ss_pred hccCcCHHHHHHHhh----hhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 111111 111222233333 34455899999999888763 3445666778899999888888
Q ss_pred HHHcCCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005732 591 KMFGLDKKPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
-..+. .+.+.|......++..-+.+-++++
T Consensus 1556 ~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1556 WFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 87777 5557788888888888888777765
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.6e-17 Score=173.84 Aligned_cols=377 Identities=12% Similarity=0.010 Sum_probs=292.8
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhc----CCCHHHH
Q 005732 201 ALKLFRWMRESGENMPNEYTFDSVIRACAR----LGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCG----CEAFDGA 272 (680)
Q Consensus 201 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 272 (680)
+++.+....+.| ++..+..+...+.. .++.++|...++...+.| +...+..|...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 355555555544 66677777777766 778888888888877764 45566677777777 7788888
Q ss_pred HHHHhhcC-CCccchhhHHHHHHHh----cCCHHHHHHHHHHhcc-CChhHHHHHHHHHhc----cCChhhHHHHHhhcC
Q 005732 273 MRVYDRLE-NPCLNASNSLINGLIS----MGRIEDAELIFNRLTE-ANSISYNSMIKGYAV----YGQVDDSKRLFEKMP 342 (680)
Q Consensus 273 ~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~ 342 (680)
.+.|++.. ..++..+..+...|.. .+++++|...|++... .+...+..+...|.. .++.++|.+.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 88888776 5556666677777777 6788888888888766 556677777777776 778999999998887
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCCh
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSL 414 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~ 414 (680)
+.+ +...+..+...|.. .+++++|+++|++..+.| +...+..+...+.. .++.
T Consensus 179 ~~~----------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 179 EQG----------------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HCC----------------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 644 56778888888887 889999999999988765 45566666666664 7889
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCHHHHHHHHHHHHHc-----CChhHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR----CGSINDAQASFSSISS-PNVAAWTALMNGYSHH-----GLGSEAV 484 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~ 484 (680)
++|..+++...+.+ ++..+..+...|.. .++.++|.+.|++..+ .+...+..+...|... +++++|+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999999988875 34556667777777 8899999999988764 5677788888888887 8999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHH
Q 005732 485 LLFEIMLEQDIVPNAATFVGVLSACVRAG---LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFI 557 (680)
Q Consensus 485 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 557 (680)
.+|++..+.| +...+..+...|...| ++++|.++|++..+.+ ++..+..|...|.. .+++++|.+.+
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999865 4566667777776656 7899999999999764 67788888889988 89999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCC---CCchHHHHHHHHHh
Q 005732 558 KDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKK---PISAYVILSNIYAV 612 (680)
Q Consensus 558 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 612 (680)
++.....++..+..+...+.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 391 ~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 391 RKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 987434468888889988887 89999999999999999954 66667777766554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.5e-18 Score=169.08 Aligned_cols=285 Identities=10% Similarity=-0.003 Sum_probs=193.8
Q ss_pred hHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005732 316 ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID 395 (680)
Q Consensus 316 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 395 (680)
..+..+...+...|++++|.++|+++.+.+ +.+...+..++.++...|++++|...++++.+.. +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 87 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-P 87 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-c
Confidence 344444555555555555555555555443 3444555555566666666666666666665532 2
Q ss_pred CChhhHHHHHHHhcccC-ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHH
Q 005732 396 RTRSTFSVLFHACSCLG-SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALM 471 (680)
Q Consensus 396 p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 471 (680)
.+...+..+...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ .+...+..+.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 23445555556666666 6666666666666554 44555666677777777777777777766542 3345666677
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--------CCCChhHHHHHHHH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYG--------VVPTLEHYTCVVDL 543 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~ 543 (680)
..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 78888888888888888887743 2246777778888888888888888888877431 13345678888888
Q ss_pred HHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH-hcCCch
Q 005732 544 LGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA-VLGKWG 617 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 617 (680)
+...|++++|.+.+++. .. +.+...+..++.++...|++++|...++++++.+|+++..+..++.++. ..|+.+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88889999988888876 22 3367788888888888999999999999999999998888888888884 455543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.4e-16 Score=166.71 Aligned_cols=361 Identities=12% Similarity=-0.001 Sum_probs=302.2
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHhhc----CCCHHHHHHHHhhcC-CCccchhhHHHHHHHh----cCCHHHHHHHHH
Q 005732 238 KVVHGLLIKCGFEFDESIGGALIEFYCG----CEAFDGAMRVYDRLE-NPCLNASNSLINGLIS----MGRIEDAELIFN 308 (680)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 308 (680)
...+....+.| +...+..|...|.. .+++++|...|+... ..+...+..+...|.. .++.++|...|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444444443 56677777778877 899999999999887 6667777888899998 899999999999
Q ss_pred Hhcc-CChhHHHHHHHHHhc----cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh----CCCh
Q 005732 309 RLTE-ANSISYNSMIKGYAV----YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ----NNLH 379 (680)
Q Consensus 309 ~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~ 379 (680)
+..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------------RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCCCCCH
Confidence 9877 567788888888887 889999999999987754 56778888888887 7899
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh----cCChHH
Q 005732 380 EKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR----CGSIND 451 (680)
Q Consensus 380 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 451 (680)
++|++.|++..+.| +...+..+...|.. .++.++|...++...+.+ ++..+..+...|.. .++.++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998865 56777777777776 899999999999999876 45667778888876 789999
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHH
Q 005732 452 AQASFSSISS-PNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRA-----GLVNEGMKI 521 (680)
Q Consensus 452 A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~ 521 (680)
|.+.|++..+ .+...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|..+
T Consensus 242 A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 242 SRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 9999998764 667788888888888 899999999999998865 556677777777776 899999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHc
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSG---HLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFG 594 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 594 (680)
+++..+.+ +...+..+...|...| ++++|++++++.....++..+..+...+.. .+++++|...++++.+
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99999865 4567778888888766 889999999988434678889999999988 8999999999999998
Q ss_pred CCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 595 LDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
.+ ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 65 56789999999998 8999999999999998774
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-17 Score=164.89 Aligned_cols=266 Identities=14% Similarity=0.036 Sum_probs=231.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
+.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++.+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 5667778889999999999999999999998754 3445567778888899999999999999999876 6678889999
Q ss_pred HHHHHhcC-ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 440 VDMYSRCG-SINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 440 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
...+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.... +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 45678999999999999999999999999985422 356677788999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-----------IELDAVVWGALLSACWFWMNMEV 584 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~ 584 (680)
++|.+.++++.... +.+...+..+...+...|++++|.+.++++- .+.....+..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999754 3467889999999999999999999998761 13346789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
|...++++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=4.1e-18 Score=171.52 Aligned_cols=258 Identities=11% Similarity=-0.020 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
.+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 2233344444444555555555555555544443 334444555555555
Q ss_pred hcCChHHHHHHHhcCCC--CC-HH----------------HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHH
Q 005732 445 RCGSINDAQASFSSISS--PN-VA----------------AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVG 504 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~--~~-~~----------------~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ 504 (680)
..|++++|.+.++++.. |+ .. .+..+ ..+...|++++|+..|+++.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555544331 11 11 11122 33348899999999999999843221 4788889
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 582 (680)
+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++ ... .+...+..++.++...|++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999998654 345788999999999999999999999987 333 4688899999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 583 EVGERAAQKMFGLDKKP-----------ISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
++|...++++++..|++ +.++..++.+|...|++++|..++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999998887 788999999999999999999998653
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=7.9e-18 Score=164.70 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=135.0
Q ss_pred cCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHH
Q 005732 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCL 109 (680)
Q Consensus 30 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~ 109 (680)
+.|++++|.+++++++.|+ +|+.+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6688999999999997765 8999999999999999999999653 5788999999999999999999998888
Q ss_pred HHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHH
Q 005732 110 VLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLIS 189 (680)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 189 (680)
..+. .+++.+.+.++.+|.+.|+++++.++++. ++..+|..+...|...|++++|...|.++ ..|..+..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 8774 45578899999999999999999988864 66779999999999999999999999988 48999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCH
Q 005732 190 GYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF 269 (680)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (680)
.+.+.|+ +++|++.+.++ . ++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+
T Consensus 157 ~L~~Lg~-yq~AVea~~KA------~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 157 TLVHLGE-YQAAVDGARKA------N-STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHTTTC-HHHHHHHHHHH------T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcc-HHHHHHHHHHc------C-CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 9999999 99999999998 2 889999999999999999999554433 233444455789999999999
Q ss_pred HHHHHHHhhcC---CCccchhhHHHHHHHhc--CCHHHHHHHHHHhcc--------CChhHHHHHHHHHhccCChhhHHH
Q 005732 270 DGAMRVYDRLE---NPCLNASNSLINGLISM--GRIEDAELIFNRLTE--------ANSISYNSMIKGYAVYGQVDDSKR 336 (680)
Q Consensus 270 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~ 336 (680)
++|..+++... +.....|..+.-.|++- ++..+.++.|..-.. .+...|..+.-.|...++++.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 99999999987 44445566666666654 455556665554433 246678889999999999998877
Q ss_pred HHhhc
Q 005732 337 LFEKM 341 (680)
Q Consensus 337 ~~~~~ 341 (680)
..-.-
T Consensus 304 tm~~h 308 (449)
T 1b89_A 304 TMMNH 308 (449)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 65544
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2e-17 Score=172.58 Aligned_cols=386 Identities=9% Similarity=-0.065 Sum_probs=220.0
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCC-CchHHHHHHHHhhcCCCHHHHHHHHhhcC--------
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKC-----G--FEF-DESIGGALIEFYCGCEAFDGAMRVYDRLE-------- 280 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 280 (680)
....|+.+...+...|+.++|.+.++..++. + ..| ...+|+.+..+|...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566888888888999999999998887653 1 122 34567788888888888888888877654
Q ss_pred ---CCccchhhHHHHHHHhc--CCHHHHHHHHHHhcc--CC-hhHHHHHHHH---HhccCChhhHHHHHhhcCcCCcchh
Q 005732 281 ---NPCLNASNSLINGLISM--GRIEDAELIFNRLTE--AN-SISYNSMIKG---YAVYGQVDDSKRLFEKMPHRSIISL 349 (680)
Q Consensus 281 ---~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 349 (680)
......+.....++... +++++|...|++... |+ ...+..+..+ +...++.++|++.+++..+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC----
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC----
Confidence 11122333344444433 356677777776665 33 2333333333 334456666666666665544
Q ss_pred hhHhhhcccCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 005732 350 NTMISVIPEMERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLV 425 (680)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 425 (680)
+.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+..+.
T Consensus 206 ----------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 206 ----------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp ----------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4455555555444433 345566666666665532 2334455666666666666666666666666
Q ss_pred hcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005732 426 KTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV 505 (680)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 505 (680)
+.. +.+..++..+..+|...+....+... ..........+.++.|...+++..+.. ..+..++..+
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 654 44455555555444322111110000 000001111233577888888887743 1235567778
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChh--HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLE--HYTCVVD-LLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMN 581 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 581 (680)
...+...|++++|.+.|++..+....+... .+..+.. .+...|++++|++.+++. .+.|+.... .+.
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~ 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKM 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHH
Confidence 888999999999999999988755443321 2333333 235678999999999876 556654332 223
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 005732 582 MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWI 640 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 640 (680)
...+..++++.++.+|+++.++..+|.+|...|++++|++.+++..+.+.......+|+
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 45566788899999999999999999999999999999999999998876665555554
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1e-15 Score=161.81 Aligned_cols=396 Identities=9% Similarity=0.012 Sum_probs=255.3
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--CCccchhhHHHH-H
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--NPCLNASNSLIN-G 293 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~-~ 293 (680)
|...|..++.. .+.|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|+++. .|+...|...+. .
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44445555542 44555555555555555442 3344455555555555555555555555554 223333333332 1
Q ss_pred HHhcCCHHHHHH----HHHHhcc------CChhHHHHHHHHHhc---------cCChhhHHHHHhhcCcCCcchhhhHhh
Q 005732 294 LISMGRIEDAEL----IFNRLTE------ANSISYNSMIKGYAV---------YGQVDDSKRLFEKMPHRSIISLNTMIS 354 (680)
Q Consensus 294 ~~~~g~~~~a~~----~~~~~~~------~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~l~~ 354 (680)
....|+.+.|.+ +|++... ++...|...+....+ .|+++.|..+|++..+...
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~-------- 161 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM-------- 161 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh--------
Confidence 123344444433 4444322 233455555554433 6778888888888877211
Q ss_pred hcccCCCChhHHHHHHHHH-------------HhCCChHHHHHHHHHHH------HCC---CCCCh--------hhHHHH
Q 005732 355 VIPEMERNPVTWNSMISGY-------------VQNNLHEKALQLYMTMR------KLA---IDRTR--------STFSVL 404 (680)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~~---~~p~~--------~~~~~l 404 (680)
......|....... ...+++..|..++..+. +.. ++|+. ..|...
T Consensus 162 -----~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 162 -----INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp -----TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 11122333222110 12345677777776632 111 23431 234333
Q ss_pred HHHhcc----cCCh----HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh-------cCChH-------HHHHHHhcCCC-
Q 005732 405 FHACSC----LGSL----QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-------CGSIN-------DAQASFSSISS- 461 (680)
Q Consensus 405 l~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~- 461 (680)
+..... .++. +.+..++++++... +.++..|..++..+.+ .|+++ +|.++|++..+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 332221 1233 46778888888764 6678888888888875 69987 89999998763
Q ss_pred --C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhH
Q 005732 462 --P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-A-ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEH 536 (680)
Q Consensus 462 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (680)
| +...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++++|.++|++..+... .+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHH
Confidence 3 578899999999999999999999999999 4565 2 4788888888899999999999999996532 23333
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc----hHHHHHHH
Q 005732 537 YTCVVDL-LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS----AYVILSNI 609 (680)
Q Consensus 537 ~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 609 (680)
|...+.. +...|+.++|.++|++. ...| ++..|..++..+...|+.++|..+|+++++..|.++. .|...+..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3332222 34689999999999987 3344 6888999999999999999999999999998877655 67777888
Q ss_pred HHhcCCchHHHHHHHHHhhCCC
Q 005732 610 YAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
....|+.+.+.++.+++.+.-+
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHcCCHHHHHHHHHHHHHHCc
Confidence 8889999999999999887543
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.3e-16 Score=151.74 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=171.6
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
++.....|++..|+..++.....+. .........+..+|...|+++.|+..++. .-+|+..++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p-------------~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~ 68 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSP-------------ERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAV 68 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCc-------------hhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHH
Confidence 3445667888888888887765441 11134556678899999999999987654 235566778
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLG 480 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 480 (680)
..+...+...++.++|...++.+...+. +.++..+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 8888888888999999999998887763 44666677777888888888888888888 56677888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005732 481 SEAVLLFEIMLEQDIVPNAATFV---GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++|.+.|+++.+. .|+..... ..+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+
T Consensus 147 ~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888874 35532111 12223334467777777777776542 335555555555566666666666555
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHcCCCCCC
Q 005732 558 KDM-PIEL-DAVVWGALLSACWFWMNMEV-GERAAQKMFGLDKKPI 600 (680)
Q Consensus 558 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~ 600 (680)
+++ ...| ++.++..++..+...|+.++ +.++++++++++|+++
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 554 2223 45555555555555555543 3455555555555554
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2e-16 Score=154.84 Aligned_cols=221 Identities=13% Similarity=0.152 Sum_probs=66.5
Q ss_pred cCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005732 131 NCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRE 210 (680)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 210 (680)
+.|+.++|.+.++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|+ +++|..+++..++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~-~EeAi~yl~~ark 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN-WEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 567777777777777333 46777777777777777777777543 455566777777766666 6777776655554
Q ss_pred cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHH
Q 005732 211 SGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSL 290 (680)
Q Consensus 211 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 290 (680)
. .+ ++.+.+.++.++.+.|+++++.++++ .|+..++..+...|...|.+++|...|..+ +.|..+
T Consensus 90 ~--~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 90 K--AR-ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred h--Cc-cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 3 22 55666667777777777776666553 355556777777777777777777777655 355666
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------------------~~ad~l~~lv 214 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------------------VHADELEELI 214 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------------------TCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------------------hCHhhHHHHH
Confidence 66666666666666666666 256666666666666666666655444322 1122233455
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 005732 371 SGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~ 391 (680)
..|.+.|++++|+.+++....
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHhC
Confidence 666666666666666666543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=2e-17 Score=166.22 Aligned_cols=261 Identities=9% Similarity=-0.046 Sum_probs=198.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
+...+..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456667777777777777777777776643 2345567777777777777777777777777665 455667777777
Q ss_pred HHHhcCChHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISS--PN-----------VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PNAATFVGVLS 507 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~ 507 (680)
+|...|++++|.+.|+++.+ |+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 77777777777777776653 11 223445577888999999999999999985322 15788999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 585 (680)
.+...|++++|.+.++++.+.. +.+..+|..+..+|...|++++|++.++++ ...| +...+..++.++...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999754 346888999999999999999999999987 3344 588899999999999999999
Q ss_pred HHHHHHHHcCCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 586 ERAAQKMFGLDKK------------PISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 586 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
...+++++++.|+ +...+..++.++...|+.+.|.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998877 356799999999999999999888765
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.6e-16 Score=159.72 Aligned_cols=292 Identities=11% Similarity=0.018 Sum_probs=164.2
Q ss_pred hcCCCHHHHHH-HHhhcC---CC----ccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChh
Q 005732 264 CGCEAFDGAMR-VYDRLE---NP----CLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 264 ~~~g~~~~A~~-~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~ 332 (680)
...|++++|.+ .|++.. +. +...+..+...+...|++++|...|+++.. .+..++..+..++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34467788877 777554 21 234456777888888888888888888776 34557777888888888888
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhccc
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACSCL 411 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 411 (680)
+|...|+++.+.+ +.+..++..+...+...|++++|++.|+++.... |+.. .+......
T Consensus 116 ~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~---- 175 (368)
T 1fch_A 116 LAISALRRCLELK--------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG---- 175 (368)
T ss_dssp HHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------
T ss_pred HHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH----
Confidence 8888888877765 5677788888888888888888888888887743 3222 11100000
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---CHHHHHHHHHHHHHcCChhHHHHH
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P---NVAAWTALMNGYSHHGLGSEAVLL 486 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~ 486 (680)
.. .......+..+...+ ..|++++|.+.|+++.+ | +...+..+...+...|++++|+..
T Consensus 176 ---~~------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 176 ---AG------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp -------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---hh------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 000000001111122 44555555555554432 2 345555555566666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005732 487 FEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL- 564 (680)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 564 (680)
|+++.+.. ..+...+..+...+...|++++|...++++.... +.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66655532 1134555556666666666666666666665432 234455556666666666666666666554 1111
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 565 -----------DAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 565 -----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
...+|..++.++...|+.++|..++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15566666666777777777766665443
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=3.3e-15 Score=157.87 Aligned_cols=373 Identities=9% Similarity=0.028 Sum_probs=269.8
Q ss_pred HHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CCh
Q 005732 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANS 315 (680)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~ 315 (680)
++..++.. +-+...|..++. +.+.|++++|..+|+++. |.+...|...+..+.+.|++++|..+|++... |+.
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34444443 446778988888 478999999999999987 67777789999999999999999999999988 877
Q ss_pred hHHHHHHHHH-hccCChhhHHH----HHhhcCcC-CcchhhhHhhhcccCCCChhHHHHHHHHHHh---------CCChH
Q 005732 316 ISYNSMIKGY-AVYGQVDDSKR----LFEKMPHR-SIISLNTMISVIPEMERNPVTWNSMISGYVQ---------NNLHE 380 (680)
Q Consensus 316 ~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~---------~~~~~ 380 (680)
..|...+... ...|+.+.|.+ +|+..... |. .+.+...|...+....+ .|+++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~------------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM------------EIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT------------STTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC------------CcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 7777666533 35677777665 66655432 21 13467788887776654 68899
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH---h----------cccCChHHHHHHHHHH------HhcC---CCch------
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHA---C----------SCLGSLQQGQLLHAHL------VKTP---FESN------ 432 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~---~----------~~~~~~~~a~~~~~~~------~~~~---~~~~------ 432 (680)
+|..+|++..+....+....|...... + ...+++..|..++... .+.. ++|+
T Consensus 148 ~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 999999999872111111233322211 1 1345566777666652 2221 2333
Q ss_pred --HhHHHHHHHHHHhc----CCh----HHHHHHHhcCCC---CCHHHHHHHHHHHHH-------cCChh-------HHHH
Q 005732 433 --VYVGTSLVDMYSRC----GSI----NDAQASFSSISS---PNVAAWTALMNGYSH-------HGLGS-------EAVL 485 (680)
Q Consensus 433 --~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~A~~ 485 (680)
...|...+...... ++. +.+..+|+++.. .+...|..++..+.+ .|+++ +|..
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 23455444332221 222 366777877663 567888888888775 68887 8999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005732 486 LFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-P 561 (680)
Q Consensus 486 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 561 (680)
+|++..+. +.| +...+..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++. .
T Consensus 308 ~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 308 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999863 245 4778888888899999999999999999974 343 357888899999999999999999987 4
Q ss_pred CCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 562 IEL-DAVVWGALLSA-CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 562 ~~p-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..| +...+...+.. +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 344 34444433333 3358999999999999999999999999999999999999999999999998764
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.2e-15 Score=159.01 Aligned_cols=383 Identities=9% Similarity=-0.019 Sum_probs=240.7
Q ss_pred eeeHHHHHHHHHhCCCChHHHHHHHHHHHHc-------CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC-----
Q 005732 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRES-------GENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG----- 248 (680)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 248 (680)
...||.+...+...|+ +++|++.|++..+. ...|....+|..+..++...|++++|...++...+..
T Consensus 51 a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999 99999999998652 1123245689999999999999999999999886531
Q ss_pred -CCC-CchHHHHHHHHhhc--CCCHHHHHHHHhhcC---CCccchhhHHHHH---HHhcCCHHHHHHHHHHhcc--C-Ch
Q 005732 249 -FEF-DESIGGALIEFYCG--CEAFDGAMRVYDRLE---NPCLNASNSLING---LISMGRIEDAELIFNRLTE--A-NS 315 (680)
Q Consensus 249 -~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--~-~~ 315 (680)
..+ ...++..+..++.. .+++++|.+.|++.. |.++.++..+..+ +...++.++|+..+++... | +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 23455555555544 467999999999987 6666666555555 3456788899999988776 3 45
Q ss_pred hHHHHHHHHHhcc----CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 316 ISYNSMIKGYAVY----GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 316 ~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
.++..+...+... ++.++|.+.+++....+ +.+..++..+...|...|++++|++.+++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 5666666666544 57889999999988876 67888999999999999999999999999987
Q ss_pred CCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHH
Q 005732 392 LAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAW 467 (680)
Q Consensus 392 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 467 (680)
. .|+ ..++..+...|...+.. ..... ...........+..+.|...++...+ .+...+
T Consensus 276 ~--~p~~~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 337 (472)
T 4g1t_A 276 Y--IPNNAYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337 (472)
T ss_dssp H--STTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred h--CCChHHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence 4 344 44555555444221110 00000 00011111122335666666665542 445677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA--TFVGVLS-ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+...+...|++++|+..|++..+....|... .+..+.. .....|++++|++.|++..+.. |+.......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH----
Confidence 888899999999999999999999854333221 2222222 2357899999999999988643 333222221
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 545 GRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
...+.+++++. . .+.++.+|..++.++...|++++|+..|+++++++|.+|.+...+|
T Consensus 412 -----~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 -----KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 22333444433 2 2446788999999999999999999999999999999888776655
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.6e-16 Score=159.59 Aligned_cols=224 Identities=12% Similarity=0.078 Sum_probs=128.6
Q ss_pred cchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCC
Q 005732 284 LNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360 (680)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (680)
...+..+...+.+.|++++|...|+++.. .+..++..+...+...|++++|...|+++.+.+ +
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p 130 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------------P 130 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------T
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------C
Confidence 34467777788888888888888888776 345677778888888888888888888877655 5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-----------hhHHHHHHHhcccCChHHHHHHHHHHHhcCC
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR-----------STFSVLFHACSCLGSLQQGQLLHAHLVKTPF 429 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 429 (680)
.+..+|..+..+|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++++.+..
T Consensus 131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 207 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN- 207 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-
T ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-
Confidence 567778888888888888888888888877632 221 112223455556666666666666665543
Q ss_pred Cc--hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005732 430 ES--NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV 503 (680)
Q Consensus 430 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 503 (680)
+. +..++..+...|...|++++|.+.|+++.+ .+..+|..+..+|...|++++|+..|+++.+. .|+ ..++.
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 285 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRY 285 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHH
Confidence 22 344455555555555555555555444331 23444444444444444444444444444442 222 34444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.+..+|...|++++|...|+++.
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444444
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.6e-16 Score=156.88 Aligned_cols=263 Identities=9% Similarity=-0.056 Sum_probs=221.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567788889999999999999999998854 3466788888999999999999999999999886 667888999999
Q ss_pred HHHhcCChHHHHHHHhcCCC--C-CHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISS--P-NVAAWTAL--------------MN-GYSHHGLGSEAVLLFEIMLEQDIVPNAATFV 503 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (680)
.+...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. ..+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999988753 2 22222222 22 3677889999999999999854 22678888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMN 581 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 581 (680)
.+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++ .. +.+...+..++..+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999654 346788999999999999999999999987 33 3468889999999999999
Q ss_pred HHHHHHHHHHHHcCCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 582 MEVGERAAQKMFGLDKK------------PISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+++|...++++++..|+ ++..+..++.++...|++++|..++++..+
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999 678899999999999999999999876543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=2.5e-15 Score=148.21 Aligned_cols=222 Identities=9% Similarity=0.038 Sum_probs=124.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh
Q 005732 287 SNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP 363 (680)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 363 (680)
+......+...|++++|...|+++.. .+..++..+...+...|++++|...++++.+.+ +.+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~ 89 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------PKDI 89 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------cCCH
Confidence 35556666677777777777777655 344567777777778888888888888777654 5567
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHH--------------HH-HhcccCChHHHHHHHHHHHhc
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVL--------------FH-ACSCLGSLQQGQLLHAHLVKT 427 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~ 427 (680)
.++..+...+...|++++|.+.++++.+.. |+.. .+..+ .. .+...|++++|...++.+.+.
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 778888888888888888888888887643 3222 22222 11 245555666666666665554
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005732 428 PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVG 504 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 504 (680)
. +.+...+..+...+...|++++|.+.++++.+ .+...|..+...+...|++++|+..++++.+.. ..+...+..
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 245 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYN 245 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 4 33444445555555555555555554444331 233444444444444444444444444444421 112334444
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
+...+...|++++|.+.++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 4444444444444444444444
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=1.7e-14 Score=138.70 Aligned_cols=269 Identities=7% Similarity=-0.013 Sum_probs=140.8
Q ss_pred HcCCChHHHHHHHhhhcCCchh----HHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHH
Q 005732 130 ANCFEIEEAKRVFDELHEDNEL----LWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLF 205 (680)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 205 (680)
...|++..|+..++.....++. ....+.++|...|+++.|+..++....|+..++..+...+...++ .++|++.+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~-~~~A~~~l 88 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR-RDAIVAEL 88 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc-HHHHHHHH
Confidence 3456777777776665443322 233445666666666666666655434444455555555555555 56666666
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccc
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLN 285 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 285 (680)
+++...+..|.+...+..+...+...|++++|...++. +.+...+..++..|.+.|++++|.+.|+++
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~------ 156 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM------ 156 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH------
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 66655544342344444444555555666666555544 234444555555555555555555555544
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHHhcc--CChhHH---HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCC
Q 005732 286 ASNSLINGLISMGRIEDAELIFNRLTE--ANSISY---NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360 (680)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (680)
.. |+.... ..++..+...|++++|..+|+++.+.. +
T Consensus 157 -------------------------~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------------p 197 (291)
T 3mkr_A 157 -------------------------QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------------S 197 (291)
T ss_dssp -------------------------HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------------C
T ss_pred -------------------------HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------------C
Confidence 33 222111 111122233455666666666655543 4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHH-HHHHHHHHHhcCCCchHhHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQ-GQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
.+...++.+..++.+.|++++|.+.|++..... +-+..++..++..+...|+.++ +..+++++.+.. |.++. +
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~----~ 271 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF----I 271 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH----H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH----H
Confidence 556666666666666666666666666665532 2234455555555556666543 455666655554 22222 2
Q ss_pred HHHHHhcCChHHHHHHH
Q 005732 440 VDMYSRCGSINDAQASF 456 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~ 456 (680)
.+...+.+.++++..-|
T Consensus 272 ~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 272 KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33455555566555544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=5.5e-15 Score=135.68 Aligned_cols=195 Identities=13% Similarity=0.045 Sum_probs=152.1
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGV 505 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 505 (680)
+++...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777788888888888888888887653 45678888888888999999999999998884 454 6777888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005732 506 LSACVRA-----------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALL 573 (680)
Q Consensus 506 l~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 573 (680)
...+... |++++|+..+++..+..+ .+...+..+..+|...|++++|++.+++. ....++..+..++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 8888888 999999999999997643 35778888999999999999999999987 2227888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.++...|++++|+..++++++.+|+++..+..++.++...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987753
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.3e-14 Score=135.84 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC--CchHhHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF--ESNVYVGTSLV 440 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 440 (680)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...+..+.+... .++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 5567777788888888888888888887765 5666677777777777777777777766654320 00000
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005732 441 DMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK 520 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 520 (680)
.....|..+...+...|++++|+..|+++.+ ..|+.. .+...|++++|.+
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHH
Confidence 0034556666777777777777777777776 345532 3445567788888
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 521 IFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.++++.... +.+...+..+...+...|++++|.+.++++ . .+.+...+..++.++...|++++|+..++++++..|+
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 888777543 234566777788888888888888888876 2 3346788888888899999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++..+..++.++...|++++|.+.+++..+..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 98899999999999999999999999887653
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.9e-14 Score=147.82 Aligned_cols=255 Identities=11% Similarity=-0.044 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC---ChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG---SLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
..+..+...|...+.++++......+.+.-...++..+..+...|...| +.++|...++...+.| +++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3444445555554444333333222222112222234445555555555 5555666666555555 34444334455
Q ss_pred HHHHhc----CChHHHHHHHhcCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005732 441 DMYSRC----GSINDAQASFSSISSPNVAAWTALMNG-Y--SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG 513 (680)
Q Consensus 441 ~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 513 (680)
.+|... +++++|.+.|+.....++..+..+... + ...+++++|+.+|++..+.| +...+..|...|. .|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 555433 566666666665553344555555555 3 45778888888888888766 5566666666665 44
Q ss_pred -----CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005732 514 -----LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WM 580 (680)
Q Consensus 514 -----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 580 (680)
++++|.++|++.. . -+...+..|...|.. ..++++|.+.|++....-++.....|...|.. .+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCC
T ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCC
Confidence 8888888888877 3 356666777777765 34888899988887333445556667766654 45
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHH--hcCCchHHHHHHHHHhhC
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYA--VLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 629 (680)
|.++|..+|+++.+.++.. +...+..+.. ..++..+|.++.++.++.
T Consensus 373 d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8999999999998877654 3344444432 334677788887776653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4e-14 Score=134.19 Aligned_cols=205 Identities=9% Similarity=-0.058 Sum_probs=146.0
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHh
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAI--DRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVY 434 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 434 (680)
.+...+..+..++...|++++|++.+++..+... .++ ...+..+...+...|++++|...++.+.+.. |+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-- 111 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-- 111 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch--
Confidence 7788999999999999999999999999877431 112 3556666666666777777777666666543 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAG 513 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 513 (680)
. ..+...|++++|...++++... .|+ ...+..+...+...|
T Consensus 112 -----------------------------~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 112 -----------------------------A-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp -----------------------------H-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------------h-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 1 2234455667777777777663 333 455666677777777
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
++++|...++++.+.. +.+...+..+...+.+.|++++|.+.+++. .. +.+...+..++.++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888887777777543 235667777788888888888888888776 22 33577888888889999999999999999
Q ss_pred HHcCC------CCCCchHHHHHH
Q 005732 592 MFGLD------KKPISAYVILSN 608 (680)
Q Consensus 592 ~~~~~------p~~~~~~~~l~~ 608 (680)
+++.. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99988 776555555543
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=166.29 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=112.5
Q ss_pred ccchhhHHHHHhhcCCChhHHHHhhccCC-------CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 005732 17 LIVSTNKAITECGRNGQLVTARNLFDQMP-------IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89 (680)
Q Consensus 17 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ 89 (680)
...+||++|++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44579999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhh
Q 005732 90 ILSVCAQLNSL-IDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDEL 145 (680)
Q Consensus 90 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 145 (680)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999975 789999999999999999999999987776654444444443333
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.2e-13 Score=132.19 Aligned_cols=250 Identities=10% Similarity=-0.044 Sum_probs=144.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR 396 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 396 (680)
.+......+...|++++|...|+++.+.+ +.+...+..+..++...|++++|++.+++..+.+..|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 70 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT 70 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch
Confidence 34445556666777777777777766654 4455567777777777777777777777776632111
Q ss_pred Ch--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHH
Q 005732 397 TR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALM 471 (680)
Q Consensus 397 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 471 (680)
+. ..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|++..+ .+...|..+.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 11 125666666666677777777776666654 34445566666666666666666666655543 2344444444
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGL---VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
..+...+++++|+..|+++.+. .|+ ...+..+...+...|+ +++|...++++.+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------- 208 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV------------------- 208 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-------------------
Confidence 2223334555555555555552 232 3333333333333333 33344333333311
Q ss_pred CChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 548 GHLHEAEEFIKDMPIELD------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 548 g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
. ...|+ ...+..++..+...|++++|...++++++++|+++.+...+..+....+
T Consensus 209 ---------~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 ---------C---APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---------H---GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---------H---hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1 11122 2467778888889999999999999999999999888877777665544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=6.7e-14 Score=143.82 Aligned_cols=344 Identities=11% Similarity=-0.001 Sum_probs=221.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCH---HHHHHHHhhcCCCccchhhHHHHHHHhcCCH
Q 005732 224 VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF---DGAMRVYDRLENPCLNASNSLINGLISMGRI 300 (680)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (680)
+...+.+.|++++|.+.+....+.| +...+..|...|...|+. ++|...|++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A--------------------- 64 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAA--------------------- 64 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHH---------------------
Confidence 4455556667777777776666655 222333344444444444 4555555444
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhccC-----ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh
Q 005732 301 EDAELIFNRLTEANSISYNSMIKGYAVYG-----QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ 375 (680)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~ 375 (680)
.+.+...+..+...+...+ +.++|...|++..+.+ . ...+..|...|..
T Consensus 65 ----------~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--------------~--~~A~~~Lg~~y~~ 118 (452)
T 3e4b_A 65 ----------ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--------------E--GNTLIPLAMLYLQ 118 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--------------C--SSCHHHHHHHHHH
T ss_pred ----------HhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--------------C--HHHHHHHHHHHHh
Confidence 3333334444444333333 5667777777776655 2 2356667777766
Q ss_pred CCCh---HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC---Ch
Q 005732 376 NNLH---EKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG---SI 449 (680)
Q Consensus 376 ~~~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 449 (680)
.+.. .++.+.+......| +......+...|...+.++++......+.+.-...++..+..|..+|...| +.
T Consensus 119 ~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 119 YPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccH
Confidence 5543 34555666655544 344555666666666655444433333322222333447888999999999 89
Q ss_pred HHHHHHHhcCCC---CCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHH
Q 005732 450 NDAQASFSSISS---PNVAAWTALMNGYSHH----GLGSEAVLLFEIMLEQDIVPNAATFVGVLSA-C--VRAGLVNEGM 519 (680)
Q Consensus 450 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~ 519 (680)
++|.+.|+...+ ++...+..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|.
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 999999987653 5555556777777554 78999999999987 33 34555555555 3 5689999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSG-----HLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQ 590 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 590 (680)
++|++..+.| +...+..|...|. .| ++++|.+.|++.. ..++..+..|...|.. ..+.++|..+|+
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 9999999876 6677778888887 55 9999999999998 6688888888887766 349999999999
Q ss_pred HHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 591 KMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
++.+. .++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 347 ~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 347 TAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99875 456789999999985 4589999999999988774
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=161.11 Aligned_cols=128 Identities=11% Similarity=0.120 Sum_probs=105.7
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005732 429 FESNVYVGTSLVDMYSRCGSINDAQASFSSIS-------SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT 501 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 501 (680)
......+|++++++|++.|++++|.++|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34566788888888888888888888886643 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 502 FVGVLSACVRAGL-VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 502 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
|+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999887 578889999999999999999998888776665444433333
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=5.9e-14 Score=134.50 Aligned_cols=241 Identities=10% Similarity=-0.113 Sum_probs=195.1
Q ss_pred hCCChHHHHHHHHHHHHCCCC---CChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHH
Q 005732 375 QNNLHEKALQLYMTMRKLAID---RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIND 451 (680)
Q Consensus 375 ~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (680)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999886421 135578888899999999999999999999886 6678899999999999999999
Q ss_pred HHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 005732 452 AQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSY 528 (680)
Q Consensus 452 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 528 (680)
|.+.|+++.+ .+...+..+...+...|++++|+..|+++.+ ..|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998764 4678899999999999999999999999998 4566555555555667789999999999888854
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 529 GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
. +++...+ .++..+...++.++|.+.+++. ...|+ ...+..++..+...|++++|...++++++.+|++..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 3 3344444 4677788888999999999886 33332 577888999999999999999999999999998743
Q ss_pred HHHHHHHHHhcCCchHHHHHH
Q 005732 603 YVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~ 623 (680)
..+.++...|++++|++.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3477888899999998876
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=8.2e-13 Score=126.34 Aligned_cols=227 Identities=11% Similarity=-0.030 Sum_probs=150.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYV 435 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 435 (680)
+.+..++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence 346677777777888888888888888887762 233455555555555 666666666666655543
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 511 (680)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 ---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 73 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ---------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 33344445555555 666666666666666643 45556666666666
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005732 512 ----AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----W 579 (680)
Q Consensus 512 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 579 (680)
.+++++|.+++++..+.+ +...+..+...|.. .+++++|.+.+++.-...++..+..+...+.. .
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 677777777777666544 44555566666666 67777777777765222345666777777777 7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 580 MNMEVGERAAQKMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 580 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
+++++|+..++++.+.+| +.++..++.+|.. .+++++|.+.+++..+.+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888887765 5677788888887 8888888888888777653
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=4.2e-13 Score=133.36 Aligned_cols=248 Identities=9% Similarity=0.033 Sum_probs=207.1
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCC-hHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGS-LQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
.+...|..+...+...|++++|++.|+++.... +-+...|..+..++...|+ +++|...++++++.. +.+...|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 345678889999999999999999999998843 2345678888889999996 999999999999987 6788899999
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCC
Q 005732 440 VDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVR-AGL 514 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~-~g~ 514 (680)
..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .| +...|..+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998874 57889999999999999999999999999995 44 47788888888888 566
Q ss_pred HHHH-----HHHHHHHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 005732 515 VNEG-----MKIFRSMKSYGVVPTLEHYTCVVDLLGRSG--HLHEAEEFIKDMPIEL-DAVVWGALLSACWFWM------ 580 (680)
Q Consensus 515 ~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------ 580 (680)
.++| ++.+++..... +-+...|..+..++...| ++++|++.+.++...| +...+..++.++...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 58888888654 335778888888898888 6899999988875455 5777888888888764
Q ss_pred --C-HHHHHHHHHHH-HcCCCCCCchHHHHHHHHHhc
Q 005732 581 --N-MEVGERAAQKM-FGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 581 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 613 (680)
+ +++|+.+|+++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999988888888776543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.5e-12 Score=124.42 Aligned_cols=197 Identities=10% Similarity=-0.074 Sum_probs=143.9
Q ss_pred CCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCc
Q 005732 360 ERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFES 431 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 431 (680)
+.+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--- 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---
Confidence 4566788889999999 999999999999999875 66777777777777 888888888888877654
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
++..+. .+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 109 ~~~a~~-------------------------------~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 109 YAEGCA-------------------------------SLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp CHHHHH-------------------------------HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred CccHHH-------------------------------HHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 333333 44444555 666677777777776654 4455556666
Q ss_pred HHhc----cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 005732 508 ACVR----AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF- 578 (680)
Q Consensus 508 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 578 (680)
.+.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.+++.-...+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 6665 777777777777777653 45666677777777 78888888887776212236677778888887
Q ss_pred ---cCCHHHHHHHHHHHHcCCCCC
Q 005732 579 ---WMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 579 ---~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 889999999999998888765
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=5.9e-13 Score=125.65 Aligned_cols=197 Identities=10% Similarity=-0.021 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566677777777888888877776652 456777788888888888888888888888743 22567777788888
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
...|++++|.++++++...+..| +...+..+...+...|++++|.+.++++ .. +.+...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887632333 4566777888888889999998888876 22 335778888888888999999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..++++++..|+++..+..++.++...|++++|.+.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999888888889999999999999999998887754
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=3.9e-13 Score=123.24 Aligned_cols=207 Identities=14% Similarity=-0.004 Sum_probs=115.1
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677788888888888999999999988887743 2345567777777777888888888887777765 5555666666
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A 518 (680)
..++...+.. ... .....|++++|+..|++..+. .|+ ...+..+...+...|++++|
T Consensus 80 g~~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 80 SEAYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHH
Confidence 6666655000 000 001125555555555555552 333 44455555555556666666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
+..|++..+.. .+...+..+..+|...|++++|+..+++. ...| ++..+..+...+...|++++|+..++++
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666555444 45555555555666666666666655554 2223 4555555555555666666666655554
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.5e-12 Score=120.34 Aligned_cols=200 Identities=15% Similarity=0.035 Sum_probs=153.9
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVL 506 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 506 (680)
+.+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++.+.. ..+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34555666677777777777777777776542 456677778888888888888888888887743 22567777788
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 507 SACVRA-GLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 507 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..++..+...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 888888 888888888888886322232 566777888888888888888888876 3333 577888888888889999
Q ss_pred HHHHHHHHHHHcCCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 583 EVGERAAQKMFGLDK-KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999888 887888888888888999999998888887543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.3e-13 Score=127.62 Aligned_cols=144 Identities=15% Similarity=0.032 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...+..+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444445555555555555555555555532 1234445555555555566666666555555432 2234445555555
Q ss_pred HHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
+.+.|++++|.+.++++ . .+.+...+..++.++...|++++|...++++++..|+++..+..++.+
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555555555555544 1 122345555555555555666666666666666555555444444433
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=5.3e-13 Score=132.59 Aligned_cols=226 Identities=10% Similarity=0.026 Sum_probs=195.2
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CCHHHHHHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGS-INDAQASFSSISS---PNVAAWTALMNGY 474 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 474 (680)
..|..+...+...|++++|...++.+++.. +.+...|..+..++...|+ +++|++.|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667778888999999999999999987 7788899999999999997 9999999998874 5778999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCChHH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR-SGHLHE 552 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 552 (680)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+... -+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999994 45 578899999999999999999999999997653 378889999999999 666688
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC--------C
Q 005732 553 A-----EEFIKDM-PIEL-DAVVWGALLSACWFWM--NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG--------K 615 (680)
Q Consensus 553 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 615 (680)
| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777766 4455 6788999998888877 699999999998 999999999999999999975 2
Q ss_pred -chHHHHHHHHH-hhC
Q 005732 616 -WGKKMDIRKRL-THL 629 (680)
Q Consensus 616 -~~~A~~~~~~~-~~~ 629 (680)
.++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 58999999998 554
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=1.2e-12 Score=116.83 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 541 (680)
++..|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 5667888899999999999999999999884 45 47788888889999999999999999988654 33566777788
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
..+...++++.|.+.+++. .. +.+...+..++..+...|++++|+..++++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 33 346888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 005732 620 MDIRKRLTHLEV 631 (680)
Q Consensus 620 ~~~~~~~~~~~~ 631 (680)
.+.+++..+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999999887643
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=4e-13 Score=125.99 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=154.7
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. ..+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566666777777888887777776643 456788888889999999999999999998853 2357888889999
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++ . .+.+...+..++..+...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999754 346778889999999999999999999987 3 3446888999999999999999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998754
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2.3e-12 Score=121.47 Aligned_cols=207 Identities=9% Similarity=-0.020 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDM 442 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (680)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4556666677777777777777777766542 2233344444444445555555555554444332
Q ss_pred HHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 005732 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
..+...+..+...+...|++++|+++++++.+.+..|+ ...+..+...+...|++++|.+.
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 13445566666777777777777777777766333443 55666777778888888888888
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
++++.+.. +.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|..+++++.+..|++
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 88887654 335677778888888888888888888876 33 3467778888888889999999999999999999998
Q ss_pred CchH
Q 005732 600 ISAY 603 (680)
Q Consensus 600 ~~~~ 603 (680)
+...
T Consensus 243 ~~~~ 246 (252)
T 2ho1_A 243 LEYQ 246 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=6e-13 Score=127.20 Aligned_cols=236 Identities=9% Similarity=-0.028 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.+ ++...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------- 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA-------- 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC--------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH--------
Confidence 344556667777777777777777776643 1223355556666666666666666666665522 11111
Q ss_pred HhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 444 SRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
....|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|.+.++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 123455666677777777777777777776331 135677777777888888888888888
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCC--
Q 005732 524 SMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN---MEVGERAAQKMFGLD-- 596 (680)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-- 596 (680)
+..+.. +.+...+..+...+...+++++|.+.++++ ...| +...+..+..++...|+ +++|...++++++..
T Consensus 133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 777542 334556666663444455888888888876 3334 47777778888888888 888999999998875
Q ss_pred -CCC-----CchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 597 -KKP-----ISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 597 -p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
|++ ..++..++.+|...|++++|.+.+++..+..+
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 442 25788899999999999999999999987643
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=2.4e-13 Score=138.85 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=210.4
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccCChHHHHHHHHHHHhc----C-CCchH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR----STFSVLFHACSCLGSLQQGQLLHAHLVKT----P-FESNV 433 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 433 (680)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556777899999999999999999886422 22 46778888999999999999999988764 1 13445
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCC-----------------hhHHHHHH
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGL-----------------GSEAVLLF 487 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 487 (680)
..+..+...|...|++++|.+.+++..+ ....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788889999999999999999987653 124478888899999999 99999999
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHH
Q 005732 488 EIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 488 ~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++..+. +-.|. ..++..+...+...|++++|.+.+++..+.... .+ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887652 11122 347778888999999999999999998742211 12 237788899999999999999999
Q ss_pred HhC-C---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHH
Q 005732 558 KDM-P---IEL----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 558 ~~~-~---~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
++. . ... ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 876 1 111 25677888889999999999999999999875543 347889999999999999999999
Q ss_pred HHHhhCC
Q 005732 624 KRLTHLE 630 (680)
Q Consensus 624 ~~~~~~~ 630 (680)
++..+..
T Consensus 367 ~~al~~~ 373 (411)
T 4a1s_A 367 EQHLQLA 373 (411)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9987643
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=2.8e-13 Score=140.14 Aligned_cols=193 Identities=9% Similarity=-0.016 Sum_probs=156.3
Q ss_pred CchHhHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSI-NDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV 505 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 505 (680)
+.+...+..+...+...|++ ++|++.|++..+ .+...|..+..+|...|++++|+..|++..+ ..|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHH
Confidence 34555555666666666666 666666665542 3466777888888888888899999988888 45777788888
Q ss_pred HHHHhcc---------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC---
Q 005732 506 LSACVRA---------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS--------GHLHEAEEFIKDM-PIEL--- 564 (680)
Q Consensus 506 l~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 564 (680)
...+... |++++|++.++++.+.. +.+...|..+..+|... |++++|++.+++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 8888888 89999999999988654 33577888888888888 8999999999987 3344
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
++..+..++.++...|++++|...|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999999999999999999999999999976544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=5e-12 Score=116.73 Aligned_cols=212 Identities=9% Similarity=-0.035 Sum_probs=144.4
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--------- 73 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-P--------- 73 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T---------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C---------
Confidence 4456677777778888888888888888776643 2234445555555555555555555555554432 1
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHH-GLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 517 (680)
.+...+..+...+... |++++|+..++++.+.+..|+ ...+..+...+...|++++
T Consensus 74 ----------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 74 ----------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp ----------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 2344555666667777 777777777777776333343 4566677777778888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 518 GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-E-LDAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 518 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
|...++++.+.. +.+...+..+...+.+.|++++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 132 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 132 AEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888777543 234667777888888888888888888876 22 3 4566676777777889999999999999988
Q ss_pred CCCCCCchHHH
Q 005732 595 LDKKPISAYVI 605 (680)
Q Consensus 595 ~~p~~~~~~~~ 605 (680)
..|+++.....
T Consensus 211 ~~p~~~~~~~~ 221 (225)
T 2vq2_A 211 NFPYSEELQTV 221 (225)
T ss_dssp HCTTCHHHHHH
T ss_pred hCCCCHHHHHH
Confidence 89988665543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1e-12 Score=133.74 Aligned_cols=269 Identities=14% Similarity=0.076 Sum_probs=212.6
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhc----CC-C
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PF-E 430 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 430 (680)
......+......+...|++++|...|+++.+.+. .+ ...+..+...+...|++++|...++.+.+. +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45666778888899999999999999999988632 22 246778888999999999999999987653 21 2
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCC--------------------hh
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGL--------------------GS 481 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~ 481 (680)
....++..+...+...|++++|...+++..+ ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2356778889999999999999999987763 22 4478888899999999 99
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhcCChH
Q 005732 482 EAVLLFEIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGV-VPT----LEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 482 ~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 551 (680)
+|+..+++..+. +..|. ..++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887642 21222 35677888889999999999999998873211 112 337788899999999999
Q ss_pred HHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCch
Q 005732 552 EAEEFIKDM-P---IELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 552 ~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 617 (680)
+|.+.+++. . ..++ ..++..++..+...|++++|...++++++..+.. +.++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999876 1 1122 5577888889999999999999999999875544 457889999999999999
Q ss_pred HHHHHHHHHhhC
Q 005732 618 KKMDIRKRLTHL 629 (680)
Q Consensus 618 ~A~~~~~~~~~~ 629 (680)
+|.+.+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=139.84 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=203.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455566667777777777777666543 223 345677777788888888888887776432
Q ss_pred ----CCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcC----C-CchHhHHHHHHHHHHhcCC--------------
Q 005732 393 ----AIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTP----F-ESNVYVGTSLVDMYSRCGS-------------- 448 (680)
Q Consensus 393 ----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~-------------- 448 (680)
+..|. ..++..+...+...|++++|...+....+.. . .....++..+...|...|+
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 11121 3356667777778888888888777766531 0 1124467777888888888
Q ss_pred ------hHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 005732 449 ------INDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN----AATFVGVLSA 508 (680)
Q Consensus 449 ------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~ 508 (680)
+++|.+.+++..+ . ...++..+...+...|++++|+..+++..+... .++ ..++..+...
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 8888887766542 1 234677888889999999999999988875210 122 3367788888
Q ss_pred HhccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELD----AVVWGALLSA 575 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~ 575 (680)
+...|++++|...+++....... .+ ..++..+...|...|++++|.+.+++. +..++ ..++..+...
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999988732111 11 556778889999999999999998876 11122 5577888889
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCC------CCchHHHHHHHHHhcCCchH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKK------PISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 618 (680)
+...|++++|...++++++..+. ...++..++.++...|+...
T Consensus 317 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999999999999887433 24568889999999887643
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.3e-12 Score=129.07 Aligned_cols=267 Identities=14% Similarity=0.074 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhc----CC-CchH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PF-ESNV 433 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 433 (680)
...+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++...+. +. +...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34456667788999999999999999988642 22 256778888999999999999999887653 21 2335
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCC--------------------hhHHH
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGL--------------------GSEAV 484 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 484 (680)
.++..+...+...|++++|.+.+++..+ ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788889999999999999999987653 22 3478888889999999 99999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhcCChHHHH
Q 005732 485 LLFEIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGV-VPT----LEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 485 ~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 554 (680)
..+++.... +..|. ...+..+...+...|++++|.+.+++..+... .++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887642 11121 34677788889999999999999998873211 111 337788889999999999999
Q ss_pred HHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHH
Q 005732 555 EFIKDM-P---IELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 555 ~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 620 (680)
+.+++. . ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876 1 1122 5567788888999999999999999998876543 337889999999999999999
Q ss_pred HHHHHHhhCC
Q 005732 621 DIRKRLTHLE 630 (680)
Q Consensus 621 ~~~~~~~~~~ 630 (680)
+.+++..+..
T Consensus 324 ~~~~~a~~~~ 333 (338)
T 3ro2_A 324 HFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=8.8e-13 Score=126.23 Aligned_cols=187 Identities=12% Similarity=-0.015 Sum_probs=104.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
..++..+...|++++|...|++... .+..++..+...+...|++++|...|+++.+.+ +.+..
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~ 112 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------------PTYNY 112 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------ccccH
Confidence 3444444444555555555544443 234455666666666666666666666665544 44566
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
.+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+....... +++...+. ++..+.
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~ 188 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYL 188 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHH
Confidence 6777777777777777777777777663 3444443444444455566677776666655543 33333332 444455
Q ss_pred hcCChHHHHHHHhcCCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 445 RCGSINDAQASFSSISSPN-------VAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
..++.++|.+.++.....+ ...|..+...+...|++++|...|+++.+
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555566666665554321 24455555566666666666666666655
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.4e-12 Score=133.00 Aligned_cols=268 Identities=12% Similarity=0.001 Sum_probs=204.4
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP----VTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.+..+...+...|++++|...|+++.+.+ +.+. ..|..+...|...|++++|.+.+++..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34456667788888888888888887754 3333 46888888999999999999999887653
Q ss_pred ----CCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhc----C-CCchHhHHHHHHHHHHhcCC--------------
Q 005732 393 ----AIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----P-FESNVYVGTSLVDMYSRCGS-------------- 448 (680)
Q Consensus 393 ----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-------------- 448 (680)
+..| ....+..+...+...|++++|...+.++.+. + .+....++..+...|...|+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 1112 2346777888889999999999999887764 1 13345577888889999999
Q ss_pred ---hHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhc
Q 005732 449 ---INDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PN----AATFVGVLSACVR 511 (680)
Q Consensus 449 ---~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~ 511 (680)
+++|.+.+++..+ . ....+..+...+...|++++|+..+++..+.... ++ ...+..+...+..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 8999888877642 1 2347788889999999999999999998763110 12 2367888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHh
Q 005732 512 AGLVNEGMKIFRSMKSYGVV-----PTLEHYTCVVDLLGRSGHLHEAEEFIKDMP----IEL----DAVVWGALLSACWF 578 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~ 578 (680)
.|++++|.+.+++....... ....++..+...|...|++++|.+++++.- ..+ ...++..+...+..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 99999999999988732211 114677888999999999999999998761 111 24577888889999
Q ss_pred cCCHHHHHHHHHHHHcCCCC
Q 005732 579 WMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~ 598 (680)
.|++++|...+++++++.+.
T Consensus 356 ~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCH
T ss_pred hccHHHHHHHHHHHHHHHhh
Confidence 99999999999999988765
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=5.7e-12 Score=135.38 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
..+|+.|...+.+.|++++|++.|++..+ +.|+ ...+..+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45778888888889999999999998888 4565 7788888888999999999999999888754 235778888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHH
Q 005732 543 LLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (680)
+|.+.|++++|++.+++. ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999887 4455 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 005732 621 DIRKRLTH 628 (680)
Q Consensus 621 ~~~~~~~~ 628 (680)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=2.6e-12 Score=126.90 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=197.3
Q ss_pred HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-
Q 005732 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKL- 392 (680)
Q Consensus 318 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~- 392 (680)
+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|.+.+++....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4445666778888888888888877754 333 356778888999999999999998887542
Q ss_pred ---CCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhc----CC-CchHhHHHHHHHHHHhcCC---------------
Q 005732 393 ---AIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PF-ESNVYVGTSLVDMYSRCGS--------------- 448 (680)
Q Consensus 393 ---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~--------------- 448 (680)
+..| ....+..+...+...|++++|...+.+..+. +. .....++..+...+...|+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 2122 2346777788888999999999998887653 11 1123467788888999999
Q ss_pred -----hHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 005732 449 -----INDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN----AATFVGVLSAC 509 (680)
Q Consensus 449 -----~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~ 509 (680)
+++|.+.+++..+ + ....+..+...+...|++++|...+++..+... .++ ..++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 8888888876542 1 234677888899999999999999998875310 111 33677888889
Q ss_pred hccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IELD----AVVWGALLSAC 576 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~ 576 (680)
...|++++|.+.+++....... .+ ..++..+...+...|++++|.+.+++. . ...+ ..++..+...+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999988732111 11 556778889999999999999999876 1 1112 45677888899
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...|++++|...+++++++.+..
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=9.1e-12 Score=125.58 Aligned_cols=233 Identities=7% Similarity=-0.035 Sum_probs=120.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHHHHHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAI-DRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGTSLVDM 442 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 442 (680)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.+..+... .++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 55667888999999999998876311 122 23566666666777777777777666554210 00000
Q ss_pred HHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHH
Q 005732 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN----AATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~ 517 (680)
.....+++.+...|...|++++|+..+++..+... .++ ..++..+...|...|++++
T Consensus 181 ------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 181 ------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 00012334444444555555555555544443100 011 1244445555555555555
Q ss_pred HHHHHHHHHhc----CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCC-CHHHHHHHHHHHHhcCC---H
Q 005732 518 GMKIFRSMKSY----GV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-----IEL-DAVVWGALLSACWFWMN---M 582 (680)
Q Consensus 518 A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p-~~~~~~~l~~~~~~~g~---~ 582 (680)
|.+.+++..+. +. +....++..+...|.+.|++++|.+.+++. . ..| ....+..+...+...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 55555555431 11 222444555555555555555555555543 1 011 11223444445555565 5
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++|..++++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 323 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 323 QGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555554 22233334566677777777777777777766654
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=2e-09 Score=114.28 Aligned_cols=417 Identities=9% Similarity=-0.028 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC---HHHHHHH
Q 005732 199 EKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEA---FDGAMRV 275 (680)
Q Consensus 199 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 275 (680)
.+.+..|++.+..+.. |..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.+. ++.+..+
T Consensus 49 ~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3344445555554432 7777777777777777777777777777766 35566677777777777777 7788888
Q ss_pred HhhcC--C---CccchhhHHHHHHHhcCCH--------HHHHHHHHHhcc------C-ChhHHHHHHHHHh---------
Q 005732 276 YDRLE--N---PCLNASNSLINGLISMGRI--------EDAELIFNRLTE------A-NSISYNSMIKGYA--------- 326 (680)
Q Consensus 276 ~~~~~--~---~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~------~-~~~~~~~ll~~~~--------- 326 (680)
|++.. - +++..|...+.-..+.++. +...++|+.... + +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 87776 2 5555555555444443332 223355555432 2 2235555554432
Q ss_pred ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHH---HHHH----------HhCCChHHHHHHHHHHHH--
Q 005732 327 VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSM---ISGY----------VQNNLHEKALQLYMTMRK-- 391 (680)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l---i~~~----------~~~~~~~~A~~~~~~m~~-- 391 (680)
..++++.+..+|++++..... .-..+|... ...+ -...+++.|...+.++..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~-------------~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMD-------------CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCS-------------SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHhCccH-------------HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 233467788888888753211 011122111 1110 001123344455544322
Q ss_pred CCCC---CC-------------h-------hhHHHHHHHhcccC-------ChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 392 LAID---RT-------------R-------STFSVLFHACSCLG-------SLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 392 ~~~~---p~-------------~-------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
.++. |. . ..|...+.---..+ ..+.+..+|++.+... +..+..|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 1111 10 0 12222222211111 1234556677776653 556777777777
Q ss_pred HHHhcCChHHHH-HHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---------CCC----------
Q 005732 442 MYSRCGSINDAQ-ASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---------VPN---------- 498 (680)
Q Consensus 442 ~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---------~p~---------- 498 (680)
.+...|+.++|. ++|++... .+...|...+...-+.|+++.|..+|+++.+... .|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 777888888886 88877653 3555677777777888888888888888876310 132
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005732 499 --AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-GHLHEAEEFIKDM--PIELDAVVWGALL 573 (680)
Q Consensus 499 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~ 573 (680)
...|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+.. ..+.++..+...+
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 2356666676677888888888888888641122334444333333344 4588888888876 2334566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCC---CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKK---PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
......|+.+.|..+|+++++..|+ ....|...+..-...|+.+.+.++.+++.+.-+.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777788889999999988888774 3345777777777888888888888888876543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=5.8e-12 Score=127.00 Aligned_cols=188 Identities=8% Similarity=-0.066 Sum_probs=140.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--C---CC-CHHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD--I---VP-NAATFV 503 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~---~p-~~~~~~ 503 (680)
....+...|++++|.+.|++..+ + ...++..+...|...|++++|+..+++..+.- . .| ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44555666777777776665532 2 23567778888888899999988888877521 1 11 145788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWG 570 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~ 570 (680)
.+...|...|++++|.+.+++..+.... ++ ..++..+..+|...|++++|.+.+++. ...| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988833111 11 247888999999999999999998876 2214 466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCC-----CCCchHHHHHHHHHhcCC---chHHHHHHHHH
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDK-----KPISAYVILSNIYAVLGK---WGKKMDIRKRL 626 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 626 (680)
.++..+...|++++|...++++++..+ .....+..++.++...|+ +++|..++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 899999999999999999999998743 333346779999999999 88888887765
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=3.4e-09 Score=112.45 Aligned_cols=228 Identities=8% Similarity=-0.024 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHH-HHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKAL-QLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTS 438 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (680)
+.+...|...+..+...|+.++|. ++|++.... ++.+...+...+......|+++.|..+|+.+++... ..+..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~----~~~~~ 414 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH----LDLAA 414 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHhhh
Confidence 456677777777777777777775 777777653 233444455556666667777777777776654310 00000
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATFVGVLSACVR-AGLVN 516 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~g~~~ 516 (680)
+-.. ....+.. .+.........|...+....+.|+.+.|..+|.++.+. +. +....|...+..-.+ .++++
T Consensus 415 ~~~~---~p~~~~~---~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 415 LMED---DPTNESA---INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHH---STTCHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCH
T ss_pred hhhc---cCcchhh---hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHH
Confidence 0000 0000000 00000012336777777777888899999999999875 21 123333322222223 35689
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL----DAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
.|.++|+...+. .+.+...+..+++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.++
T Consensus 488 ~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 488 TACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999865 4456777788888888899999999999987 3233 345677777777889999999999999
Q ss_pred HHcCCCCCC
Q 005732 592 MFGLDKKPI 600 (680)
Q Consensus 592 ~~~~~p~~~ 600 (680)
+.+..|+++
T Consensus 567 ~~~~~P~~~ 575 (679)
T 4e6h_A 567 FFEKFPEVN 575 (679)
T ss_dssp HHHHSTTCC
T ss_pred HHHhCCCCc
Confidence 999999974
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.7e-11 Score=107.82 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=138.1
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
++.+|..+...|.+.|++++|++.|++..+ .+...|..+..++.+.|++++|+..+.+...... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 456777888888888888888888887653 4677888888899999999999999999887432 246667777788
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
+...++++.|.+.+.+..... +.+...+..+..+|.+.|++++|++.+++. ...| ++..+..++.++...|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 888999999999999988654 346778888999999999999999999987 3344 6888999999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 005732 587 RAAQKMFGLDKKP 599 (680)
Q Consensus 587 ~~~~~~~~~~p~~ 599 (680)
..|+++++.+|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 9999999999976
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=8.1e-11 Score=114.42 Aligned_cols=217 Identities=8% Similarity=0.044 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhc-------ccCCh-------HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh
Q 005732 380 EKALQLYMTMRKLAIDRTRSTFSVLFHACS-------CLGSL-------QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR 445 (680)
Q Consensus 380 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (680)
++|...|++..... +.+...|..+...+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776632 234445555555543 23554 6666666666663114445556666666666
Q ss_pred cCChHHHHHHHhcCCC--C-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 005732 446 CGSINDAQASFSSISS--P-NVA-AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC-VRAGLVNEGMK 520 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~ 520 (680)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665543 2 122 566666666666666666666666665321 1223332222211 12466666666
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 521 IFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+|++..+.. +.+...|..++..+.+.|++++|..+|++. . .+| ....|..++......|+.+.|..+++++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666655432 224555555555555666666666666554 1 133 244555555555556666666666666666
Q ss_pred CCCCC
Q 005732 595 LDKKP 599 (680)
Q Consensus 595 ~~p~~ 599 (680)
..|++
T Consensus 270 ~~p~~ 274 (308)
T 2ond_A 270 AFREE 274 (308)
T ss_dssp HTTTT
T ss_pred Hcccc
Confidence 66554
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=6.3e-11 Score=109.65 Aligned_cols=164 Identities=12% Similarity=-0.058 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+.... +...+..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 3444444444555555555555555544322234444444444445555555555555555433211 334444455555
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHhc
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-DA-------VVWGALLSACWFWMNMEVGERAAQKMFGLDKK--PISAYVILSNIYAVL 613 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~ 613 (680)
...|++++|++.+++. ...| +. ..+..++..+...|++++|+..++++++.+|+ ++.++..++.+|...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 5555555555555444 1222 22 23444444555555555555555555555555 555555555555555
Q ss_pred CCc---------------------------hHHHHHHHHHhhC
Q 005732 614 GKW---------------------------GKKMDIRKRLTHL 629 (680)
Q Consensus 614 g~~---------------------------~~A~~~~~~~~~~ 629 (680)
|+. ++|...+++..+.
T Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 167 GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 554 9999999998875
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=5.2e-10 Score=108.66 Aligned_cols=215 Identities=9% Similarity=-0.002 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh-------cCCh-------HHHHHHHhcCCC----CCHHHHHHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-------CGSI-------NDAQASFSSISS----PNVAAWTALMNGYSH 476 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 476 (680)
++|..+|+++++.. +.++..|..++..+.. .|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888865 6777788888777753 5886 899999987654 356689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPN-AA-TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG-RSGHLHEA 553 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 553 (680)
.|++++|..+|+++.+ +.|+ .. .|..++..+.+.|++++|..+|++..+... .+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998 4565 33 788899999999999999999999997543 34555554443322 37999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---CCC-CCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 554 EEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGL---DKK-PISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 554 ~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.++|++. .. +.++..|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 32 336888999999999999999999999999996 553 55678899999999999999999999998
Q ss_pred hCCCcc
Q 005732 628 HLEVKK 633 (680)
Q Consensus 628 ~~~~~~ 633 (680)
+..+..
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 876543
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=4.4e-11 Score=106.44 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=96.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 3344444444444444444443321 1123444444444444555555555555444332 2234445555555555566
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 550 LHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 550 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|+++..+..++.++...|++++|.+.+++..
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666655554 1 233566777777778888888888888888888888888888888888888888888888888877
Q ss_pred hCC
Q 005732 628 HLE 630 (680)
Q Consensus 628 ~~~ 630 (680)
+..
T Consensus 172 ~~~ 174 (186)
T 3as5_A 172 ELD 174 (186)
T ss_dssp HHH
T ss_pred HcC
Confidence 654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.9e-12 Score=124.15 Aligned_cols=244 Identities=11% Similarity=0.031 Sum_probs=127.0
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc-----
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL-------AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----- 427 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 427 (680)
+.+..++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...++.+.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445677888999999999999999999998763 12223445666777777788888888777776653
Q ss_pred -C-CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-
Q 005732 428 -P-FESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ- 493 (680)
Q Consensus 428 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~- 493 (680)
+ .+.....+..+...|...|++++|.+.++++.+ .....+..+...+...|++++|+.+++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 122344455555566666666666655544331 01223444444455555555555555544432
Q ss_pred -----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 494 -----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYG-------VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 494 -----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+..|. ..++..+...+...|++++|.+.++++.+.. ..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------------- 242 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM--------------------- 242 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH---------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH---------------------
Confidence 11121 2234444444444555555555444444210 0000000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 561 PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 561 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
....+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222222334455666666677777777777777777777778778888888777777654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=4.1e-12 Score=124.01 Aligned_cols=162 Identities=14% Similarity=0.049 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CC-C
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQ------DIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSY------GV-V 531 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~-~ 531 (680)
.+..+...+...|++++|+..++++.+. +-.| ....+..+...+...|++++|.+.++++.+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555566665555555442 1112 2445566666667777777777777666632 11 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC------
Q 005732 532 PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI--------EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGL------ 595 (680)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 595 (680)
.....+..+...+...|++++|.++++++ .. .| ....+..++..+...|++++|...++++++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23445666677777777777777776665 11 22 2445677777788888888888888888764
Q ss_pred ---CCCCCchHH------HHHHHHHhcCCchHHHHHHHHHh
Q 005732 596 ---DKKPISAYV------ILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 596 ---~p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.+.....+. .++..+...+.+.+|...+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 233333333 33444455566666555555544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.7e-09 Score=108.51 Aligned_cols=265 Identities=11% Similarity=0.020 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHhcccCChHHHHHHHHHHHhcCC---Cc--hHhH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS----TFSVLFHACSCLGSLQQGQLLHAHLVKTPF---ES--NVYV 435 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 435 (680)
........+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+... .+ ...+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445556778999999999999988754222222 455666778889999999999998875310 11 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CHH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISS----------P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV--P--NAA 500 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~ 500 (680)
+..+...+...|++++|.+.+++... | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56778889999999999999887642 1 1345667888899999999999999998863221 1 245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYT-----CVVDLLGRSGHLHEAEEFIKDMP-IELD-----AVV 568 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 568 (680)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999999874321211 11222 23345779999999999999872 2221 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+..+...+...|++++|...+++++...+.. ...+..++.++...|++++|.+.+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6677788889999999999999998765432 236778899999999999999999998764
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.9e-10 Score=115.54 Aligned_cols=236 Identities=7% Similarity=-0.016 Sum_probs=122.1
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCh
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID-RTR 398 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~ 398 (680)
.....+...|++++|...|+++.+......+ .+....++..+...|...|+++.|+..+++..+.... ++.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSD--------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence 3445566778888888887776653210000 0112446677777788888888888877776542100 000
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----C----CHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----P----NVAAWTA 469 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~ 469 (680)
. .....+++.+...|...|++++|.+.|++..+ + ...++..
T Consensus 178 ~------------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 178 S------------------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp H------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h------------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 00122333344444444444444444433221 1 1234555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC----CCChhHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLE-----QDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGV----VPTLEHYTCV 540 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l 540 (680)
+..+|...|++++|+..+++..+ .... ...++..+...+.+.|++++|...+++..+... +.....+..+
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666667777666666655 2211 245566666677777777777777776663211 1112233444
Q ss_pred HHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 541 VDLLGRSGH---LHEAEEFIKDMPIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 541 ~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
...+...|+ +.+|+.++++.+..|+ ...+..++..+...|++++|...++++++
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555 5666666665533222 22334455555555666666555555543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=3.1e-10 Score=104.93 Aligned_cols=205 Identities=7% Similarity=-0.021 Sum_probs=147.7
Q ss_pred CChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHH
Q 005732 396 RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMN 472 (680)
Q Consensus 396 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 472 (680)
.++..+......+...|++++|...++...+...+++...+..+..++...|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677778888888899999999999888876436667777788888888999999888887653 34567888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--ChhHHHHHHH
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPN-A-------ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP--TLEHYTCVVD 542 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 542 (680)
++...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++.+.. +. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 888888899999888888873 344 3 346667777788888888888888888643 12 2456666777
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 543 LLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+|...|+. +++++. ...+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77655432 223221 122344443333 33456789999999999999999987777776654
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=8.9e-11 Score=121.34 Aligned_cols=213 Identities=13% Similarity=0.037 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCCh-hhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHH
Q 005732 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAF-CEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVY 276 (680)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (680)
+++++..+++..... |.+...+..+...+...|++ ++|...++..++..
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------------
Confidence 455555555443322 22445555555555555555 55555555555543
Q ss_pred hhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CChhHHHHHHHHHhcc---------CChhhHHHHHhhcCcCC
Q 005732 277 DRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANSISYNSMIKGYAVY---------GQVDDSKRLFEKMPHRS 345 (680)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~ 345 (680)
+.+...+..+..+|...|++++|...|++... |+...+..+...+... |++++|...|+++.+.+
T Consensus 134 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 134 ----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 33334445555666666666666666666655 6666777888888888 99999999999988876
Q ss_pred cchhhhHhhhcccCCCChhHHHHHHHHHHhC--------CChHHHHHHHHHHHHCCCC--CChhhHHHHHHHhcccCChH
Q 005732 346 IISLNTMISVIPEMERNPVTWNSMISGYVQN--------NLHEKALQLYMTMRKLAID--RTRSTFSVLFHACSCLGSLQ 415 (680)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~ 415 (680)
+.+...|..+..+|... |++++|++.|++..+.... .+...+..+..++...|+++
T Consensus 210 --------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 210 --------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHH
T ss_pred --------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 67788999999999988 8899999999999875311 35667777888888888888
Q ss_pred HHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcC
Q 005732 416 QGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSI 459 (680)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (680)
+|...+++..+.. +.+...+..+..++...|++++|.+.+..+
T Consensus 276 ~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 276 EALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888887765 555666777777777777777777666554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=3.5e-10 Score=113.63 Aligned_cols=228 Identities=10% Similarity=0.003 Sum_probs=158.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAI-DRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC 446 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (680)
.....+...|++++|+..|++..+... .++.. ....++..+...|...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDI-------------------------------EKAEFHFKVAEAYYHM 154 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-------------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChH-------------------------------HHHHHHHHHHHHHHHc
Confidence 344556778888888888888765311 11110 1122344445555555
Q ss_pred CChHHHHHHHhcCCC-----C-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhc
Q 005732 447 GSINDAQASFSSISS-----P-----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ----DIVP-NAATFVGVLSACVR 511 (680)
Q Consensus 447 g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~ 511 (680)
|+++.|...+++..+ + ...+++.+..+|...|++++|++.|++..+. +-.+ ...++..+...|..
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 555555554444321 1 2346788999999999999999999988762 1111 13567788889999
Q ss_pred cCCHHHHHHHHHHHHh-----cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhc
Q 005732 512 AGLVNEGMKIFRSMKS-----YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM----PI--ELD-AVVWGALLSACWFW 579 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~ 579 (680)
.|++++|.+.+++..+ .. +....++..+...+.+.|++++|.+.+++. .. .|. ...+..+...+...
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999885 33 333778888999999999999999999876 11 232 33455555556667
Q ss_pred CC---HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 580 MN---MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 580 g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
|+ +.+|+..+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 88888888772 23334456688999999999999999999998765
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=8.5e-10 Score=97.96 Aligned_cols=168 Identities=13% Similarity=-0.022 Sum_probs=144.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+.. ..+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45567778889999999999999998875 467788899999999999999999999998853 23577888888999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
...|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998654 346788888999999999999999999987 2 34468889999999999999999999
Q ss_pred HHHHHHcCCCCCCch
Q 005732 588 AAQKMFGLDKKPISA 602 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~ 602 (680)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999887543
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=5.3e-10 Score=107.61 Aligned_cols=205 Identities=11% Similarity=-0.017 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc----CCCch-HhHHHHHHHHHHhcCChHHH
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PFESN-VYVGTSLVDMYSRCGSINDA 452 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 452 (680)
++++|.+.|.+. ...|...|++++|...+.+..+. +-+++ ..+++.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 23455667777777777666543 21111 34566666666666666666
Q ss_pred HHHHhcCCC-----CC----HHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCCH
Q 005732 453 QASFSSISS-----PN----VAAWTALMNGYSHH-GLGSEAVLLFEIMLEQDIVPN-------AATFVGVLSACVRAGLV 515 (680)
Q Consensus 453 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~~~~~~g~~ 515 (680)
+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 666655442 11 23555666666664 6666666666666542 111 23455566666666666
Q ss_pred HHHHHHHHHHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcC
Q 005732 516 NEGMKIFRSMKSYGVVPTL------EHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAV------VWGALLSACW--FWM 580 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g 580 (680)
++|+..|++..+....... ..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 6666666666643322221 13455555666666666666666665 3333211 2233333332 234
Q ss_pred CHHHHHHHHHHHHcCCCCC
Q 005732 581 NMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~ 599 (680)
++++|+..|+++.+++|..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 5666666666666655544
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=9.2e-10 Score=110.42 Aligned_cols=266 Identities=11% Similarity=-0.013 Sum_probs=188.5
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP----VTWNSMISGYVQNNLHEKALQLYMTMRKLAI- 394 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~- 394 (680)
.....+...|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++......
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 344456678888888888887665431 1222 2566777888899999999999998765321
Q ss_pred CCCh----hhHHHHHHHhcccCChHHHHHHHHHHHhc----CCC--c-hHhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 005732 395 DRTR----STFSVLFHACSCLGSLQQGQLLHAHLVKT----PFE--S-NVYVGTSLVDMYSRCGSINDAQASFSSISS-- 461 (680)
Q Consensus 395 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 461 (680)
.++. .++..+...+...|++++|...++...+. +.+ | ....+..+...+...|++++|...+++...
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1122 23556777888999999999999888753 222 2 345667788889999999999999987542
Q ss_pred C------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHhcC
Q 005732 462 P------NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFV----GVLSACVRAGLVNEGMKIFRSMKSYG 529 (680)
Q Consensus 462 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~ 529 (680)
+ ....+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.....
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 1 245677888899999999999999999875321211 11111 23344778999999999999987543
Q ss_pred CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 530 VVPT---LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELDA-VVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 530 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
..+. ...+..+...+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...+++++...+.
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 2221 224567788899999999999998876 111122 35666777888999999999999999886553
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=3.6e-10 Score=121.44 Aligned_cols=166 Identities=12% Similarity=0.121 Sum_probs=136.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGV 505 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 505 (680)
+.+...++.|...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 44567788888888888888888888887663 4577888888899999999999999999888 4565 7788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNME 583 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 583 (680)
..++...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++. ...| +...+..++.++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999999988754 235778888999999999999999999887 4455 5788889999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 005732 584 VGERAAQKMFGLDKK 598 (680)
Q Consensus 584 ~a~~~~~~~~~~~p~ 598 (680)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999998876543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=1.3e-08 Score=95.42 Aligned_cols=239 Identities=9% Similarity=-0.016 Sum_probs=154.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
.-..-.|.+..++.-..++ ...........+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3445567787777633222 1111222333344566655555421 11133333444444433 222
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 451 DAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 451 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
|+..|++..+ ++...+..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666766552 556666678888888899999999998887755322 45667777888889999999999999888
Q ss_pred hcCCCC-----ChhHHHHHHHH--HH--hcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-
Q 005732 527 SYGVVP-----TLEHYTCVVDL--LG--RSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGL- 595 (680)
Q Consensus 527 ~~~~~~-----~~~~~~~l~~~--~~--~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 595 (680)
+. .| +..+...|+.+ .. ..+++.+|..+|+++ ...|+..+...++.++.+.|++++|+..++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 64 34 23444444444 22 334889999999988 44455333344444777889999999999887776
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 596 ---------DKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 596 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47788888888888888887 8889988888753
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=2e-09 Score=101.73 Aligned_cols=183 Identities=10% Similarity=-0.012 Sum_probs=107.3
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-HHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS--P-N---VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN-AATFV 503 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~ 503 (680)
+...+..+...+.+.|++++|.+.|+++.+ | + ...+..+..++.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555555556666666666655542 2 2 34555555556666666666666666555321 111 23344
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005732 504 GVLSACVR--------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSA 575 (680)
Q Consensus 504 ~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 575 (680)
.+..++.. .|++++|+..|+++.+..+. +......+.......+.+ ...+..++..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 44444544 55556666665555543211 111111111100000000 1113567788
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHhhCC
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVL----------GKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 630 (680)
+...|++++|+..|+++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8999999999999999999999854 4788999999977 89999999999998753
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=6.1e-10 Score=107.15 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcc--cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhc
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHACSC--LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (680)
+|.+++++..+. .+++...+ .++ .. .+++++|...+... ...|...|++++|.+.|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466667766654 23222222 222 22 22478888887765 4567788999999998877
Q ss_pred CCC-------C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHH
Q 005732 459 ISS-------P--NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VPN--AATFVGVLSACVRA-GLVNEGMKIFR 523 (680)
Q Consensus 459 ~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~-g~~~~A~~~~~ 523 (680)
... + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 653 1 146888999999999999999999999876211 111 35788888899996 99999999999
Q ss_pred HHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHH
Q 005732 524 SMKSYGVVP-T----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD---A-----VVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 524 ~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
+..+..... + ..++..+...+.+.|++++|++.+++. ...|+ . ..+..++.++...|++++|+..+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988432111 1 356888999999999999999999987 22222 1 25677888888999999999999
Q ss_pred HHHHcCCCCCCch-----HHHHHHHHH--hcCCchHHHHHHHHHh
Q 005732 590 QKMFGLDKKPISA-----YVILSNIYA--VLGKWGKKMDIRKRLT 627 (680)
Q Consensus 590 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 627 (680)
+++++++|+.... +..++..+. ..+++++|++.++++.
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9999999986543 344566664 4567888888876654
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=6.4e-09 Score=95.64 Aligned_cols=182 Identities=9% Similarity=-0.051 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHH
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISS--PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA----ATFVG 504 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ 504 (680)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455566666777777777766552 22 235556666667777777777777776653 2321 12333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH
Q 005732 505 VLSACVR------------------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDA 566 (680)
Q Consensus 505 ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 566 (680)
+..++.. .|++++|...|+++.+..+. +...+....... ...... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----HHHHHH-----------H
Confidence 3333332 33445555555554432211 111111100000 000000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCccC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKD 634 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 634 (680)
.....++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++++...++...
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1113456678889999999999999999999985 5699999999999999999999999988765443
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=8.4e-10 Score=105.68 Aligned_cols=221 Identities=14% Similarity=0.053 Sum_probs=151.6
Q ss_pred cccCChHHHHHHHHHHHh-------cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHH
Q 005732 409 SCLGSLQQGQLLHAHLVK-------TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----------PNVAAWTAL 470 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 470 (680)
...|++++|...+++..+ ...+....++..+...|...|++++|.+.++++.+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777766665 23244567788899999999999999999887652 224578888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc------C-CCCChhH
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQ------DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSY------G-VVPTLEH 536 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 536 (680)
...+...|++++|+..++++.+. .-.|+ ..++..+...+...|++++|.++++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988763 11233 567778888899999999999999988854 1 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHcCCCCC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDMP----------IEL-DAVVWGALLSACWFWM------NMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~p~~ 599 (680)
+..+..+|...|++++|.+++++.- ..+ ....+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788889999999999999888751 122 2223333333333222 3444444444444444555
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 600 ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+..+..++.+|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667999999999999999999999988753
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=2.1e-10 Score=97.77 Aligned_cols=139 Identities=6% Similarity=-0.133 Sum_probs=93.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3445566666666666544 2232 2334455666666677777777776666543 2256666677777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 553 AEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGER-AAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
|+..|++. ...| ++..+..++..+...|++++|.. +++++++++|+++.+|...+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777765 3344 57778888888888888876554 4688999999988888888888888775
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=4.1e-09 Score=100.94 Aligned_cols=171 Identities=9% Similarity=-0.064 Sum_probs=136.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 005732 454 ASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP 532 (680)
Q Consensus 454 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 532 (680)
+.+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++.... |
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p 182 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--Q 182 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--C
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--c
Confidence 3333333444556667778888999999999999999884 45 46778888889999999999999999887653 3
Q ss_pred ChhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CchHHHHH
Q 005732 533 TLEHY-TCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP--ISAYVILS 607 (680)
Q Consensus 533 ~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~ 607 (680)
+.... ......+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ +.++..++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 43322 23333466778888888888876 3344 68899999999999999999999999999999998 78899999
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 005732 608 NIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...|+.++|...+++...
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999988654
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=2.3e-08 Score=93.83 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=171.2
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
++-..-.|.+..++.-..++...+ + ...-..+.++|...|++... ..-.|....+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~---------------~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~ 74 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVT---------------D-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVL 74 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCC---------------C-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCccc---------------h-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHH
Confidence 344455677777776554443221 2 23333456788888887642 1223333344
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHH
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSH 476 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~ 476 (680)
..+...+ ..+ +...+++..+.+ +++......+..++...|++++|.+++.+... .+...+..++..+.+
T Consensus 75 ~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 75 DLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 4444443 222 677777777665 45556666888999999999999999998743 356678888999999
Q ss_pred cCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 477 HGLGSEAVLLFEIMLEQDIVP-----NAATFVGVLSACV--RAG--LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
.|+.+.|.+.+++|.+ ..| +..+...+..++. ..| ++.+|..+|+++.+. .|+...-..+..++.+.
T Consensus 149 ~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp TTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHc
Confidence 9999999999999988 567 3667777776643 334 899999999998754 34423333444589999
Q ss_pred CChHHHHHHHHhC-CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 548 GHLHEAEEFIKDM-PI----------EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 548 g~~~~A~~~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
|++++|.+.++.+ .. .| ++.++..++......|+ +|.++++++.+..|+++...
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999999865 21 24 57777677766677787 89999999999999996543
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=5.8e-09 Score=86.83 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=77.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~ 582 (680)
+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.++++++ . .+.+...+..++..+...|++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 3344444444444444444444322 123344444455555555555555555544 1 123455666677777778888
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++|...++++++..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888777778888888888888888888888776543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=4.8e-09 Score=99.14 Aligned_cols=203 Identities=8% Similarity=-0.024 Sum_probs=146.1
Q ss_pred CChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCch---HhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---C-HHH
Q 005732 396 RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESN---VYVGTSLVDMYSRCGSINDAQASFSSISS--P---N-VAA 466 (680)
Q Consensus 396 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~-~~~ 466 (680)
.+...+......+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+++.+ | . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667778888899999999999999999875 333 67788899999999999999999998864 3 2 456
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHH
Q 005732 467 WTALMNGYSH--------HGLGSEAVLLFEIMLEQDIVPNA-ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 467 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
+..+..++.. .|++++|+..|+++.+. .|+. .....+. .+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 7778888888 99999999999999984 4542 2211111 11111100 01124
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHcCCCCCCch
Q 005732 538 TCVVDLLGRSGHLHEAEEFIKDM-PIEL----DAVVWGALLSACWFW----------MNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
..+...|.+.|++++|+..++++ ...| ....+..++.++... |++++|+..++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 55677888889999998888876 2223 245677777777755 89999999999999999998643
Q ss_pred ---HHHHHHHHHhcCCchHH
Q 005732 603 ---YVILSNIYAVLGKWGKK 619 (680)
Q Consensus 603 ---~~~l~~~~~~~g~~~~A 619 (680)
...+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44556666555555443
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=2e-08 Score=91.16 Aligned_cols=162 Identities=9% Similarity=-0.094 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHhcCCCCChhHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG----LVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
.++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456667777777778888889999998888865 56667777777777 6 8999999999988755 56677
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHH
Q 005732 538 TCVVDLLGR----SGHLHEAEEFIKDM-PIELD---AVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVI 605 (680)
Q Consensus 538 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 605 (680)
..|...|.. .+++++|++++++. ...|+ +..+..|...|.. .+++++|+.+|+++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 778888877 78999999999987 34443 7888888888888 78999999999999988 666788999
Q ss_pred HHHHHHhc-C-----CchHHHHHHHHHhhCCC
Q 005732 606 LSNIYAVL-G-----KWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 606 l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 631 (680)
|+.+|... | ++++|.+++++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999999887763
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=3.9e-09 Score=100.93 Aligned_cols=223 Identities=11% Similarity=0.021 Sum_probs=154.8
Q ss_pred HhCCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc------C-CCchHhHHHHH
Q 005732 374 VQNNLHEKALQLYMTMRKL-------AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT------P-FESNVYVGTSL 439 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 439 (680)
...|++++|+..|++..+. ..+....++..+...+...|++++|...++.+.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665441 22223457788888999999999999999988764 2 23456678889
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCC-HHH
Q 005732 440 VDMYSRCGSINDAQASFSSISS-----------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ------DIVPN-AAT 501 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~ 501 (680)
...|...|++++|.+.++++.+ .....+..+...+...|++++|+..++++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999987652 12457888889999999999999999998874 11333 567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-C
Q 005732 502 FVGVLSACVRAGLVNEGMKIFRSMKSY-------GVVP-TLEHYTCVVDLLGRSG------HLHEAEEFIKDMP-IEL-D 565 (680)
Q Consensus 502 ~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~ 565 (680)
+..+...+...|++++|.++++++.+. ...+ ....+..+...+...+ .+.++...++... ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888889999999999999999988843 1122 2333444444444333 3444444555553 223 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 596 (680)
..++..++..+...|++++|..+++++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5678888999999999999999999998753
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=4.1e-09 Score=92.67 Aligned_cols=154 Identities=6% Similarity=-0.013 Sum_probs=96.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcC
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL-LGRSG 548 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 548 (680)
...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++..... +...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 33444455555555555544431 22 234444444555555555555555555443221 22222211111 11222
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CchHHHHHHHHHhcCCchHHHHHHH
Q 005732 549 HLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP--ISAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 549 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
...+|++.+++. ...| ++..+..+..++...|++++|+..++++++.+|++ +..+..++.++...|+.++|...++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223456666655 3345 68888999999999999999999999999999986 5589999999999999999999998
Q ss_pred HHhh
Q 005732 625 RLTH 628 (680)
Q Consensus 625 ~~~~ 628 (680)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=1e-09 Score=93.45 Aligned_cols=124 Identities=9% Similarity=-0.036 Sum_probs=102.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
|...+...|++++|++.++...... +.+...+-.+...|.+.|++++|++.|++. ...| ++..|..++.++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4455667889999999999887532 123445667889999999999999999987 4455 688999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHhhC
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDI-RKRLTHL 629 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 629 (680)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5777654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.2e-09 Score=116.09 Aligned_cols=147 Identities=13% Similarity=0.017 Sum_probs=71.4
Q ss_pred cccCChHHHHHHHHHHH--------hcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHc
Q 005732 409 SCLGSLQQGQLLHAHLV--------KTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHH 477 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 477 (680)
...|++++|...++++. +.. +.+...+..+...+...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45556666666666555 222 33344444555555555555555555554442 3344455555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 478 GLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
|++++|+..|++..+. .|+ ...+..+..++...|++++ ++.|+++.+.+. .+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555542 232 3444444445555555555 555555543321 1334444445555555555555555
Q ss_pred HHhC
Q 005732 557 IKDM 560 (680)
Q Consensus 557 ~~~~ 560 (680)
++++
T Consensus 557 ~~~a 560 (681)
T 2pzi_A 557 LDEV 560 (681)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 5544
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=3.3e-08 Score=82.13 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG 545 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 545 (680)
.|..+...+...|++++|..+++++.+.+ ..+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888899999999998888753 2356777778888888899999999999888654 335677788888899
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 546 RSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++.+|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999887 2 33467788888899999999999999999999988863
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.4e-08 Score=90.40 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR 546 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 546 (680)
..+..++.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|+++.+.. +.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44888899999999999999999984 45 47788889999999999999999999999765 3367788888888766
Q ss_pred cCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 547 SGH--LHEAEEFIKDMPIELDAV--VWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 547 ~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.|+ .+.+...++... .|++. .+...+.++...|++++|+..|++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666663 34433 34455666777899999999999999999975
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=2.2e-08 Score=97.07 Aligned_cols=219 Identities=9% Similarity=-0.041 Sum_probs=152.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHH
Q 005732 376 NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQAS 455 (680)
Q Consensus 376 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (680)
.|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677888888888765321 11 011146777777776654 4467777888888887
Q ss_pred HhcCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 005732 456 FSSISS-----PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQD---IVPN--AATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 456 ~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776542 11 3477888889999999999999998876521 1222 3567778888888 999999999
Q ss_pred HHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 005732 522 FRSMKSYGVVP-----TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IELD----AVVWGALLSACWFWMNMEVGERA 588 (680)
Q Consensus 522 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 588 (680)
+++..+..... ...++..+...|.+.|++++|++.+++. . ..++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887422111 1467788899999999999999999886 1 1122 23566666777788999999999
Q ss_pred HHHHHcCCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 005732 589 AQKMFGLDKKPISA-----YVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 589 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 622 (680)
+++++ .+|..... ...++..+ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99976433 33445544 56776666553
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=7e-09 Score=87.91 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=81.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+...+..+...+.+.|++++|+..|++. ...| ++..|..++.++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445566677788888888888888876 3334 6888888888899999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887653
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=2.2e-08 Score=106.52 Aligned_cols=159 Identities=9% Similarity=0.037 Sum_probs=125.8
Q ss_pred cCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 005732 446 CGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.|++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998874 45788999999999999999999999999985 45 477888899999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCC
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW---MNMEVGERAAQKMFGLD 596 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 596 (680)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999764 336788899999999999999999999987 3344 678888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 005732 597 KKPISAYVILS 607 (680)
Q Consensus 597 p~~~~~~~~l~ 607 (680)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=7.6e-08 Score=104.09 Aligned_cols=145 Identities=12% Similarity=-0.069 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
...+..+..++...|++++|+..|+++.+. .| +...+..+..++...|++++|++.|+++.+... .+...+..+..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~ 509 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAA 509 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 344444555555555555555555555542 22 234444444555555555555555555554321 13344445555
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 543 LLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
+|.+.|++++ ++.+++. ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.++..
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555555 5555444 2222 344455555555555555555555555555555555555555555443
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=1.2e-08 Score=86.21 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...+..+...+.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445666777788888888888888877 3344 68889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhCC
Q 005732 612 VLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~ 630 (680)
..|++++|.+.+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=2.9e-08 Score=81.30 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+......|.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..++++++++|+++.+|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 344455555566666666665554 2223 45566666666666666666666666666666666666666666666666
Q ss_pred CchHHHHHHHHHhhC
Q 005732 615 KWGKKMDIRKRLTHL 629 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~ 629 (680)
++++|.+.+++..+.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666553
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=8.8e-08 Score=87.13 Aligned_cols=130 Identities=10% Similarity=-0.102 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|.+.+++..... +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 34556677778888888888888776 35677788888888888888888888888887654 33566777778888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-D----------------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...|++++|.+.+++. ...| + ...+..++.++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888776 2122 2 2667777777888888888888888888888876
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=3.6e-08 Score=80.77 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=89.9
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 005732 495 IVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGA 571 (680)
Q Consensus 495 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 571 (680)
+.|+ ...+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4454 3456666777778888888888888777654 335677777888888888888888888876 3334 6888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
++.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999998888877765
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=1.1e-07 Score=86.14 Aligned_cols=133 Identities=12% Similarity=0.096 Sum_probs=96.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
.+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++++++.. |.+...+..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 38888999999999999999988753 2356678888888889999999999999988876 667778888887776554
Q ss_pred C--hHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005732 448 S--INDAQASFSSISSPNVAA--WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVG 504 (680)
Q Consensus 448 ~--~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 504 (680)
+ ...+...++.+..++... +..+..++...|++++|+..|++..+ +.|+......
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3 455667777777665543 33345556667888888888888877 5677544433
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=6.4e-07 Score=86.00 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=122.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhHHH
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAA----TFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYT 538 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 538 (680)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887422 22221 2334566677788999999999999863322 22 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchH
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDMP-----IELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAY 603 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 603 (680)
.+..+|...|++++|.++++++- .+.+ ..++..++..|...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888761 1112 3477888999999999999999999999876443 5679
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhh
Q 005732 604 VILSNIYAVLGK-WGKKMDIRKRLTH 628 (680)
Q Consensus 604 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 628 (680)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999988764
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=1.7e-07 Score=99.54 Aligned_cols=145 Identities=11% Similarity=0.002 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+ .+...|..+..++...|++++|++.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555443 33445555555555555555555555555432 234455555555555555555555555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 005732 489 IMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS---GHLHEAEEFIKDM 560 (680)
Q Consensus 489 ~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 560 (680)
+..+. .| +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55553 22 24455555555555555555555555555432 12344455555555555 5555555555544
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.5e-08 Score=98.22 Aligned_cols=196 Identities=9% Similarity=-0.021 Sum_probs=148.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEI 489 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 489 (680)
..|++++|..++++..+... .. .+...++++.|...|+. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35678889888888776421 11 01114788888877654 46778899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--C-CC--ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005732 490 MLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYG--V-VP--TLEHYTCVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 490 m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (680)
..+. +-.+. ..+|..+...|...|++++|+..+++..+.- . .+ ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8753 21111 4578888889999999999999999887321 1 11 14577888899988 999999999987
Q ss_pred C-CC-----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC------chHHHHHHHHHhcCCchHHHHHHHH
Q 005732 560 M-PI-----EL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI------SAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 560 ~-~~-----~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
. .+ .+ ...++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 11 146788889999999999999999999999876653 2567788888899999999999999
Q ss_pred Hh
Q 005732 626 LT 627 (680)
Q Consensus 626 ~~ 627 (680)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=6.2e-08 Score=81.50 Aligned_cols=118 Identities=11% Similarity=-0.017 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
..+..+...+.+.|++++|.+.|++. ...| ++..|..++.++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34455666777888888888888776 3334 678888888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 613 LGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
.|++++|.+.+++..+..+ .+|....+..+...+...+++
T Consensus 99 ~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAA-----------------------AQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHH-----------------------TCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-----------------------CCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999876532 245555566666666555544
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=7.1e-07 Score=84.77 Aligned_cols=226 Identities=9% Similarity=0.015 Sum_probs=119.7
Q ss_pred HhCCC-hHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccC--ChHHHHHHHHHHHhcCCCchHhHHHHHHHHH----Hh
Q 005732 374 VQNNL-HEKALQLYMTMRKLAIDRTRS-TFSVLFHACSCLG--SLQQGQLLHAHLVKTPFESNVYVGTSLVDMY----SR 445 (680)
Q Consensus 374 ~~~~~-~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 445 (680)
.+.|. .++|+++++.+.. +.|+.. .++.--..+...+ +++++..+++.++... +.+..+++.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 34444 4688888888877 345544 3555555555666 7888888888877765 44444554433333 33
Q ss_pred c---CChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 005732 446 C---GSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGS--EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL--- 514 (680)
Q Consensus 446 ~---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--- 514 (680)
. ++++++.++++.+.+ .+..+|+--...+.+.|+++ ++++.++++.+.... |...|..-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 3 556666666665542 45555555555555566655 666666666654322 44445444444444443
Q ss_pred ---HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 005732 515 ---VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE-AEEFIKDM-PI----ELDAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 515 ---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a 585 (680)
++++++.++.+.... +-|...|+.+...+.+.|+..+ +.++.++. .. ..++..+..++.++.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 555555555555433 2244555555555555554322 33344433 11 12444445555555555555555
Q ss_pred HHHHHHHHc-CCCCCCchHH
Q 005732 586 ERAAQKMFG-LDKKPISAYV 604 (680)
Q Consensus 586 ~~~~~~~~~-~~p~~~~~~~ 604 (680)
.++++.+.+ .+|.....|.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhccChHHHHHHH
Confidence 555555553 4555443333
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.9e-07 Score=88.41 Aligned_cols=163 Identities=9% Similarity=-0.042 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CCC--hh
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA-----ATFVGVLSACVRAGLVNEGMKIFRSMKSYGV---VPT--LE 535 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 535 (680)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667788899999999999888875322111 2233455566788899999999998874321 111 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------C
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM----PIELD-----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------I 600 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~ 600 (680)
+++.+...|...|++++|.+++++. ...|+ ..++..++..|...|++++|+..++++++..++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999998875 11222 2578889999999999999999999998865431 4
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHhh
Q 005732 601 SAYVILSNIYAVLGKWGKK-MDIRKRLTH 628 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 628 (680)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688999999999999999 777877654
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=6.8e-06 Score=78.05 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=180.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC--ChHHHHHH
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG--SINDAQAS 455 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~ 455 (680)
++.++...|....+.| ...++|......++..+ +.+..+++.-...+...| +++++++.
T Consensus 31 ~y~~~~~~~~a~~~~~------------------e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~ 91 (306)
T 3dra_A 31 DYKQIMGLLLALMKAE------------------EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDW 91 (306)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3456666666665544 34468889999988887 667777888888888888 99999999
Q ss_pred HhcCCC---CCHHHHHHHHHHH----HHc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHH
Q 005732 456 FSSISS---PNVAAWTALMNGY----SHH---GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVN--EGMKIFR 523 (680)
Q Consensus 456 ~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~ 523 (680)
++.+.. .+..+|+.-...+ ... +++++++.+++++.+...+ |...|..-.-.+.+.|.++ ++++.++
T Consensus 92 ~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 92 CEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 998874 4455666654444 445 7899999999999986533 6777877777777788888 9999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHc
Q 005732 524 SMKSYGVVPTLEHYTCVVDLLGRSGH------LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN-MEVGERAAQKMFG 594 (680)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 594 (680)
++.+.++ -+-..|+.-..++.+.|+ +++++++++++ ...| |...|+.+...+.+.|+ .+.+..+++++.+
T Consensus 171 ~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 171 KVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 9997654 367778777777777776 89999999887 3344 78889999888888877 5556778888888
Q ss_pred CC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 595 LD---KKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 595 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++ |.++.++..++.+|.+.|+.++|.++++++.+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 76 78888999999999999999999999999986
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=2.7e-07 Score=84.65 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=132.2
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC--CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCH----HHHH
Q 005732 397 TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF--ESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNV----AAWT 468 (680)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 468 (680)
+...+..+...+...|++++|...|+.+.+... +.....+..+..+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556667788899999999999999998642 12246778889999999999999999998763 321 2455
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 005732 469 ALMNGYSH------------------HGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLSACVRAGLVNEGMKIFRSMKSYG 529 (680)
Q Consensus 469 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 529 (680)
.+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999984 45532 2211110 000111111
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 530 VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.....+...|.+.|++++|+..++++ ...|+ ...+..++.++.+.|+.++|+..++++....|++.+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11234567888999999999999987 33343 3567888889999999999999999999999987543
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.6e-07 Score=82.36 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...++
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 34444444444444444444444444444432211 12233334444444444444444433
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=8.7e-07 Score=80.28 Aligned_cols=162 Identities=10% Similarity=-0.043 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC----ChHHHHHHHHHHHhcCCCchHhHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG----SLQQGQLLHAHLVKTPFESNVYVG 436 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 436 (680)
.++..+..+...|...+++++|+++|++..+.| +...+..+...|.. + +.++|...++...+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367788888999999999999999999998865 56677777777777 6 8999999999998866 55667
Q ss_pred HHHHHHHHh----cCChHHHHHHHhcCCC-CC----HHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005732 437 TSLVDMYSR----CGSINDAQASFSSISS-PN----VAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFV 503 (680)
Q Consensus 437 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (680)
..|...|.. .+++++|.+.|++..+ .+ +..+..|...|.. .+++++|+.+|++..+.+ .+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHH
Confidence 777777776 7889999999988775 22 6788888888888 788999999999988852 2444566
Q ss_pred HHHHHHhcc-C-----CHHHHHHHHHHHHhcCCC
Q 005732 504 GVLSACVRA-G-----LVNEGMKIFRSMKSYGVV 531 (680)
Q Consensus 504 ~ll~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 531 (680)
.|...|... | ++++|.++|++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 666666532 2 889999999888877643
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.3e-07 Score=77.61 Aligned_cols=119 Identities=11% Similarity=0.012 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
..+..+...+.+.|++++|++.|++. ... .++..+..++.++...|++++|+..++++++++|+++.++..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566677788888888888888876 333 3688888999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 005732 613 LGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANL 673 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (680)
.|++++|.+.+++..+..+ . ....|.+..+...+.....++
T Consensus 85 ~~~~~~A~~~~~~al~~~p----~----------------~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDA----E----------------VNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHH----H----------------HHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCc----c----------------cCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999887531 1 124577777777777666554
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.1e-07 Score=83.50 Aligned_cols=117 Identities=9% Similarity=0.139 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCH--HHHH
Q 005732 512 AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSA-CWFWMNM--EVGE 586 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~g~~--~~a~ 586 (680)
.|++++|...+++..... +.+...+..+...|...|++++|.+.+++. ... .+...+..++.+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444555555555544332 223444555555555555555555555544 112 244555555555 4556666 6666
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666666666666666666666666666666666666554
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=2.7e-07 Score=79.88 Aligned_cols=127 Identities=6% Similarity=-0.082 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 578 (680)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.+++. .. +.+...+..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555666666666666666666433 224556666677777777777777777765 22 3357788888889999
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHH--HHHhcCCchHHHHHHHHHhh
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSN--IYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 628 (680)
.|++++|...++++++..|+++..+..+.. .+...|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998777754444 48888999999999987654
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.68 E-value=5.8e-07 Score=85.85 Aligned_cols=166 Identities=7% Similarity=0.015 Sum_probs=80.1
Q ss_pred HHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhh
Q 005732 275 VYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNT 351 (680)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 351 (680)
.+....+.+...+..+...+...|++++|...|++... | +...+..+...+.+.|++++|...++++...+
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------ 181 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------ 181 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------
Confidence 33333333334444455555555666666666555544 2 33455555666666666666666666665543
Q ss_pred HhhhcccCCCChhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCC
Q 005732 352 MISVIPEMERNPVT-WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE 430 (680)
Q Consensus 352 l~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (680)
|+... .......+...++.+.|+..|++..... +.+...+..+...+...|++++|...+..+.+....
T Consensus 182 ---------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 182 ---------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 22222 2222223444555555666665555432 123344444555555555555555555555544311
Q ss_pred -chHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 431 -SNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 431 -~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
.+...+..++..+...|+.++|...|
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 11344444455554445444444443
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=4.5e-08 Score=93.24 Aligned_cols=192 Identities=9% Similarity=-0.073 Sum_probs=125.1
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLS 507 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 507 (680)
+...+..+...+...|++++|...|++..+ .+...|..+..++...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344556666677777777777777776552 35677777888888888888888888888774 34 4667777788
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
++...|++++|...|++..+.... +...+...+....+..+...... ........+......+... ..|++++|.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 888888888888888887743211 11111111111111111111111 2222334444444444332 3799999999
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHhhC
Q 005732 588 AAQKMFGLDKKPISAYVILSNIYAVL-GKWGKKMDIRKRLTHL 629 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 629 (680)
.++++++.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998877777777777776 7899999999988764
No 127
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=1.3e-05 Score=82.46 Aligned_cols=215 Identities=12% Similarity=-0.011 Sum_probs=133.6
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 412 (680)
.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... |....+......+...
T Consensus 197 Rv~~~ye~al~~~--------------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~- 258 (493)
T 2uy1_A 197 RMHFIHNYILDSF--------------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDE- 258 (493)
T ss_dssp HHHHHHHHHHHHT--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcch-
Confidence 4556777766543 556788888888888899999999999999886 5444322211111111
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
++ +++.+. ..+... ..+.+.. .........|...+....+.++.+.|..+|+++ .
T Consensus 259 --~~---~~~~l~---------------~~~~~~-~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~ 313 (493)
T 2uy1_A 259 --EA---VYGDLK---------------RKYSMG-EAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G 313 (493)
T ss_dssp --TH---HHHHHH---------------HHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T
T ss_pred --hH---HHHHHH---------------HHHHhh-ccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h
Confidence 11 111111 111000 0000000 000012345666677777778899999999988 3
Q ss_pred CCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005732 493 QDIVPNAATFVGVLSAC-VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGA 571 (680)
Q Consensus 493 ~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 571 (680)
. ..++...|......- ...++.+.|..+|+...+.- +.++..+...++...+.|+.+.|..+|+++. .....|..
T Consensus 314 ~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~ 389 (493)
T 2uy1_A 314 N-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDS 389 (493)
T ss_dssp T-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHH
T ss_pred C-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHH
Confidence 2 123444444322211 22347999999999998643 3345566777888888999999999999983 35777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHc
Q 005732 572 LLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
.+..-...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88777788999999999988875
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.3e-07 Score=87.45 Aligned_cols=183 Identities=11% Similarity=-0.022 Sum_probs=110.9
Q ss_pred hcCChHHHHHHHhcCCC---CCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC----------------
Q 005732 445 RCGSINDAQASFSSISS---PNVAAWTAL-------MNGYSHHGLGSEAVLLFEIMLEQDIVPN---------------- 498 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------- 498 (680)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35566666666665542 234455555 3444444455555555544443 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HH
Q 005732 499 ------AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDA----VV 568 (680)
Q Consensus 499 ------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 568 (680)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.....|++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223334556667777777777777776533 22224445555677778888888888766433332 35
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLD--KK-PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 6667777777888888888888776433 33 334667777788888888888888888776543
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=1.5e-07 Score=92.18 Aligned_cols=144 Identities=12% Similarity=0.011 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...|..+...+.+.|++++|+..|++..+. .|+...+ ..+.+.++- +.....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 445666666677777777777777776663 2321000 000000000 0013566677777
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH-H
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK-M 620 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~ 620 (680)
|.+.|++++|++.+++. ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.++...|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3333 6888899999999999999999999999999999999999999999999999999 4
Q ss_pred HHHHHHhh
Q 005732 621 DIRKRLTH 628 (680)
Q Consensus 621 ~~~~~~~~ 628 (680)
..+++|.+
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46666653
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=1.3e-06 Score=79.29 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL 514 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 514 (680)
.+..+...+...|++++|.+.|++...++...|..+..++...|++++|+..|++..+.. ..+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344556667777777777777777777777777777777777777777777777777643 2245667777777777777
Q ss_pred HHHHHHHHHHHHhcCCCC---------------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005732 515 VNEGMKIFRSMKSYGVVP---------------TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 515 ~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 565 (680)
+++|.+.|++..+..... ....+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 777777777777533211 1256666777777777777777777775 44454
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=4.4e-07 Score=74.71 Aligned_cols=118 Identities=9% Similarity=-0.057 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSAC 576 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 576 (680)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.+++. .. +.+...+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445555566666667777777666666443 224556666677777777777777777665 22 33577888888889
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999889999999999888763
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=5.6e-07 Score=73.31 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSAC 576 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 576 (680)
...+..+...+...|++++|.++++++.... +.+...+..+...+.+.|++++|..+++++ . .+.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3455555666666666666666666666443 234556666667777777777777777665 2 234677778888888
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999998888888888876654
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=4.1e-07 Score=75.24 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 577 (680)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++. .. +.+...+..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444444444555555555555444322 123444455555555555555555555554 12 235677777888888
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
..|++++|...++++++..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88999999999999999999888888888888877664
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.59 E-value=3e-07 Score=73.28 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCchHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK--PISAYVILSN 608 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 608 (680)
+...+..+...+...|++++|...+++. . .+.+...+..++.++...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666777788888888888888776 2 2346778888888999999999999999999999999 8889999999
Q ss_pred HHHhc-CCchHHHHHHHHHhhCCCc
Q 005732 609 IYAVL-GKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 609 ~~~~~-g~~~~A~~~~~~~~~~~~~ 632 (680)
++... |++++|.+.+++..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876543
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=1.6e-07 Score=76.28 Aligned_cols=95 Identities=13% Similarity=-0.089 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
.+..+...+.+.|++++|+..+++. ...| +...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788899999999999887 3344 7888899999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 005732 614 GKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 614 g~~~~A~~~~~~~~~~~ 630 (680)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=4.4e-07 Score=84.00 Aligned_cols=138 Identities=9% Similarity=-0.142 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLL 544 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 544 (680)
+......+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 344556677778888888888777653 3544444445556777888888888887554321 111 23566777888
Q ss_pred HhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 545 GRSGHLHEAEEFIKDMP---IELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
.+.|++++|+..|++.. ..|. .........++.+.|+.++|...|++++..+|+ +.+...|..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 88888888888888772 2143 346677777888999999999999999999998 666665543
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=4.5e-06 Score=80.05 Aligned_cols=157 Identities=9% Similarity=-0.053 Sum_probs=117.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PN----AATFVG 504 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 504 (680)
.+..+...|++++|.+.+++..+ ++ ...+..+...+...+++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667788889999888877543 22 113334666677778999999999999874222 22 336888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh----c-CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKS----Y-GVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELD-AVVWG 570 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 570 (680)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|.+++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998883 1 1111 2347788899999999999999998875 12222 67888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHcC
Q 005732 571 ALLSACWFWMN-MEVGERAAQKMFGL 595 (680)
Q Consensus 571 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 595 (680)
.++.++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999998764
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=5.4e-07 Score=76.03 Aligned_cols=105 Identities=8% Similarity=-0.007 Sum_probs=88.2
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 005732 495 IVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGA 571 (680)
Q Consensus 495 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 571 (680)
+.|+ ...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|++.|++. ...| ++..+..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4454 4567777788889999999999999998764 346788888999999999999999999987 3444 5788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
++.++...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999863
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=2.4e-07 Score=78.29 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=87.4
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005732 487 FEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL 564 (680)
Q Consensus 487 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 564 (680)
|+++.. +.|+ ...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|++.+++. ...|
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 3443 4456666777788888888888888887654 336777778888888888888888888876 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
++..+..++.++...|++++|+..|++++++.|+++....
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 6778888999999999999999999999999998876643
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=2.2e-07 Score=76.21 Aligned_cols=93 Identities=5% Similarity=-0.005 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc-------hHHHH
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS-------AYVIL 606 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 606 (680)
.+..++..+.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556677777888888888887776 3344 5777888888888888888888888888888877643 56677
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 005732 607 SNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888899999988888765
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=3.8e-07 Score=78.85 Aligned_cols=111 Identities=11% Similarity=0.006 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSA 575 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 575 (680)
+...+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35677788888899999999999999998654 336778888899999999999999999887 3344 58888889999
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
+...|++++|+..|+++++++|+++..+...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999988866555433
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=1.3e-06 Score=78.51 Aligned_cols=129 Identities=9% Similarity=-0.015 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh----cCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC-C----
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKS----YGVV-PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IEL-D---- 565 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~---- 565 (680)
..+..+...+...|++++|...+++... .+.. ....++..+...+...|++++|.+.+++. . ..+ +
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444445555555555544442 1111 11233444555555555555555555443 0 011 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
...+..+...+...|++++|...++++++..+.. ...+..++.++...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2345556666666777777777777766543221 12246677777777777777777766654
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=8.2e-07 Score=79.53 Aligned_cols=168 Identities=8% Similarity=-0.011 Sum_probs=100.8
Q ss_pred HHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005732 443 YSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 519 (680)
....|+++.+.+.++...+ .....+..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 3444555555555544332 23445666677777788888888888777763 2221100000 000000
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.. .....+..+..+|.+.|++++|++.+++. .. +.+...+..++.++...|++++|+..++++++++|
T Consensus 84 ---~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 84 ---KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp ---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ---HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 00 01245666777777888888888887776 22 34678888899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHH-HHHHHHhhCC
Q 005732 598 KPISAYVILSNIYAVLGKWGKKM-DIRKRLTHLE 630 (680)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 630 (680)
+++.++..++.++...|+.+++. ..++.+...+
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888877 5566665544
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=1.5e-06 Score=83.38 Aligned_cols=161 Identities=9% Similarity=-0.098 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HH
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISS---PNV------AAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VPN--AA 500 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~ 500 (680)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677788888888877764331 111 2234455667778899999999998876321 122 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH---hcCC-CC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C------CCC-CH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMK---SYGV-VP--TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P------IEL-DA 566 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~ 566 (680)
++..+...|...|++++|...+++.. +... .+ ...++..+...|.+.|++++|++++++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888888999999999999998887 2211 11 1257788889999999999999998875 1 111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHcC
Q 005732 567 VVWGALLSACWFWMNMEVG-ERAAQKMFGL 595 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 595 (680)
.++..++.++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788888999999999999 7888887653
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=8.7e-07 Score=73.77 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+...+..+...+...|++++|...+++. .. +.+...+..++.++...|++++|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666777777777777777777765 22 335777888888888888999999999999998888888888899999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999888887653
No 146
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=4.9e-05 Score=78.23 Aligned_cols=375 Identities=9% Similarity=-0.031 Sum_probs=213.8
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCC-hhhHHHHHHHHHHh-CCC-CCchHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGA-FCEGKVVHGLLIKC-GFE-FDESIGGAL 259 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l 259 (680)
.|...+..+-. ++ ++.+..+|++.... .| +...|..-+....+.++ .+....+|+..+.. |.. .+...|...
T Consensus 17 vyer~l~~~P~-~~-~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 17 IMEHARRLYMS-KD-YRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHT-TC-HHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHCCC-CC-HHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 56667776655 56 89999999998874 24 88888888877776663 45677788887765 433 356778887
Q ss_pred HHHhhc----CCCHHHHHHHHhhcCC-CccchhhHHHHHHHh---cCCHHHHHHHHHHhccCChhHHHHHHHHHhccCCh
Q 005732 260 IEFYCG----CEAFDGAMRVYDRLEN-PCLNASNSLINGLIS---MGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQV 331 (680)
Q Consensus 260 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 331 (680)
+..+.. .++.+.+.++|++... |... +..+-..|.. ......+..++.+.. +.+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-----------------~~y 153 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGS-LSELWKDFENFELELNKITGKKIVGDTL-----------------PIF 153 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHHHH-----------------HHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhh-HHHHHHHHHHHHHHhccccHHHHHHHHh-----------------HHH
Confidence 777653 4567888888888762 2111 1222222211 111122222221110 122
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCChhhHHHH
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNN--L-----HEKALQLYMTMRKLAIDRTRSTFSVL 404 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m~~~~~~p~~~~~~~l 404 (680)
..|..+++.+...- ...+...|...+.--...+ - .+++..+|+++.... +.+...|...
T Consensus 154 ~~ar~~y~~~~~~~-------------~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~y 219 (493)
T 2uy1_A 154 QSSFQRYQQIQPLI-------------RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHH-------------HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 23333333322100 0113345555554432221 1 345677888877643 3446667777
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAV 484 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 484 (680)
+..+...|+.+.|..++++.... |.+...+. .|....+.++. +..+...+.. ...+.+
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~--------------~~~l~~~~~~-~~~~~~- 277 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV--------------YGDLKRKYSM-GEAESA- 277 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH--------------HHHHHHHTC---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH--------------HHHHHHHHHh-hccchh-
Confidence 77777888899999999988887 44433322 12221111111 1112111100 000000
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--C
Q 005732 485 LLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR-SGHLHEAEEFIKDM--P 561 (680)
Q Consensus 485 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~ 561 (680)
.. ..+ ......|...+....+.++.+.|..+|+++ .. ...+...|-..+..-.. .++.+.|.++|+.. .
T Consensus 278 ----~~-~~~-~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 278 ----EK-VFS-KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp --------CH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred ----hh-hcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 00 000 011345666677666788899999999999 32 22344555433333333 33699999999987 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 562 IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 562 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+.++..+...+......|+.+.|..+|+++ +.....+...+..-...|+.+.+.+++++..+
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3234556666777777899999999999998 23445677777777788999999998888774
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.1e-06 Score=70.62 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+..+...+...|++++|.+.+++. .. +.+...+..++..+...|++++|...++++++..|+++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444445555554444443 11 2234445555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHhh
Q 005732 615 KWGKKMDIRKRLTH 628 (680)
Q Consensus 615 ~~~~A~~~~~~~~~ 628 (680)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555543
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=9.6e-07 Score=72.93 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
+.+...+..+...+.+.|++++|.+.+++. ...| +...+..++..+...|++++|+..++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 334667788889999999999999999987 4444 78889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++...|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999988753
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.8e-06 Score=75.66 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=100.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCCh--H
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL-LGRSGHL--H 551 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 551 (680)
...|++++|+..+++..+.. ..+...+..+...+...|++++|...++++..... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888999998888743 23577888888899999999999999999886542 356777788888 7789998 9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 552 EAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 552 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
+|.+.++++ ...| +...+..++..+...|++++|...++++++..|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999887 3344 578888999999999999999999999999999986544
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=3.3e-06 Score=67.75 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 577 (680)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++. ... .+...+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555556666666666666666666433 224556666666777777777777777665 223 35777888888899
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999877777776654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.6e-06 Score=73.14 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
...+..+...+...|++++|.+.+++. ...|+ ...+..+..++...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444445555555555555555544 33343 3445555555555666666666666666666655555666666
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 005732 609 IYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~ 628 (680)
++...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655554
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.1e-06 Score=75.73 Aligned_cols=64 Identities=8% Similarity=-0.008 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...+..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4567777788888888888888888888888888888888888888888888888888887764
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.43 E-value=6.6e-07 Score=74.52 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGL-------DKKPISAY----VILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..|..+..++...|++++|+..+++++++ +|+++.+| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888899999999999999999999 99998899 99999999999999999999998865
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=1.4e-06 Score=70.82 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567778889999999999999999987 2 34468888999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhCC
Q 005732 612 VLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~ 630 (680)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988753
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=1.5e-06 Score=78.11 Aligned_cols=152 Identities=13% Similarity=-0.017 Sum_probs=91.6
Q ss_pred cCChHHHHH---HHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHHH
Q 005732 446 CGSINDAQA---SFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE----QDIVP-NAATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 446 ~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~ 517 (680)
.|++++|.+ .+..........+..+...+...|++++|+..+++..+ .+..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 44332223445566666666667777777777666654 11111 23456666667777777777
Q ss_pred HHHHHHHHHhc----CCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHH
Q 005732 518 GMKIFRSMKSY----GVVP--TLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELD----AVVWGALLSACWFWMNME 583 (680)
Q Consensus 518 A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~ 583 (680)
|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 77777766632 1111 1344666777777788888887777664 11112 234567777788889999
Q ss_pred HHHHHHHHHHcCCC
Q 005732 584 VGERAAQKMFGLDK 597 (680)
Q Consensus 584 ~a~~~~~~~~~~~p 597 (680)
+|...+++++++..
T Consensus 165 ~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 165 EAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888876543
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00022 Score=68.37 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=115.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccC-ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc-C-
Q 005732 372 GYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACSCLG-SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC-G- 447 (680)
Q Consensus 372 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 447 (680)
...+.+..++|+++++++... .|+.. .++.--..+...| .++++..+++.+.... +.+..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334455667899999999874 45443 4555555555566 5889999999888876 66777777766666665 6
Q ss_pred ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 005732 448 SINDAQASFSSISS---PNVAAWTALMNGYSHHGLGS--------EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL-- 514 (680)
Q Consensus 448 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-- 514 (680)
+++++.++++.+.+ .|..+|+--...+.+.|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888888888775 45667766555555555555 788888888875433 56666666666666554
Q ss_pred -----HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 515 -----VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 515 -----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777776543 3356666665556655554
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.9e-06 Score=69.34 Aligned_cols=110 Identities=7% Similarity=-0.129 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 578 (680)
.+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..++.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44455555666666666666666666443 224566666667777777777777777665 2333 57778888888888
Q ss_pred cCCHHHHHHHHHHHHcCC------CCCCchHHHHHHHHH
Q 005732 579 WMNMEVGERAAQKMFGLD------KKPISAYVILSNIYA 611 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 611 (680)
.|++++|...++++++++ |+++.....+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999988 777666666665543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=1.9e-06 Score=72.28 Aligned_cols=107 Identities=8% Similarity=-0.033 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 577 (680)
..+..+...+...|++++|...|+++.... +.+...|..+..+|.+.|++++|++.+++. ...| ++..+..++.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344445556666777777777777766543 235566666777777777777777777766 2233 5677788888899
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
..|++++|+..++++++..|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999998876655443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=4.2e-06 Score=72.19 Aligned_cols=93 Identities=12% Similarity=-0.033 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
..|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..+++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444445555555555555555555542 22 34444444555555555555555555555432 1234444455555
Q ss_pred HHhcCChHHHHHHHHhC
Q 005732 544 LGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (680)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555543
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=2.9e-06 Score=86.93 Aligned_cols=145 Identities=10% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...|..+...+.+.|++++|+..|++..+. .|+...+ ..+... +.. ......|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHH----HHH----HHHHHHHHHHHHH
Confidence 446667777777788888888888777762 2221000 000000 000 0013566677788
Q ss_pred HHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|.+.|++++|++.+++. ... .+...+..+..++...|++++|+..|+++++++|++..++..++.++.+.|++++|.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 333 3688889999999999999999999999999999999999999999999999988875
Q ss_pred -HHHHHhhC
Q 005732 622 -IRKRLTHL 629 (680)
Q Consensus 622 -~~~~~~~~ 629 (680)
.+++|..+
T Consensus 407 ~~~~~~f~k 415 (457)
T 1kt0_A 407 RIYANMFKK 415 (457)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 45666544
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=2.3e-06 Score=70.18 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+...+..+...+...|++++|.+.+++. . .+.+...+..++..+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3556777888999999999999999987 3 3347888899999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
No 162
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.35 E-value=7.1e-08 Score=93.14 Aligned_cols=463 Identities=9% Similarity=0.013 Sum_probs=257.9
Q ss_pred CccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 005732 16 TLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA 95 (680)
Q Consensus 16 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~ 95 (680)
-.+.+|+.|..++.+.|++.+|+..|- ...|...|..+|.+..+.|++++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 355677889999999898888888763 445666678888889999999998888887776533 3344456777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhcc
Q 005732 96 QLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIK 175 (680)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 175 (680)
+.++..+.++++. .|+..-...+.+-+...|.++.|.-+|..+.. |..|...+++.|++..|++.-++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655443322 35555566677777777777777777776643 44555667777777777766553
Q ss_pred CCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchH
Q 005732 176 MPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESI 255 (680)
Q Consensus 176 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 255 (680)
..++.||..+-.+|...+. +.-|.-.--.++- .+.-...++..|-..|.+++-..+++.-+... .....+
T Consensus 196 --Ans~ktWKeV~~ACvd~~E-frLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 196 --ANSTRTWKEVCFACVDGKE-FRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp --CCSSCSHHHHTHHHHHSCT-TTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred --cCChhHHHHHHHHHhCchH-HHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 3567899999999999888 7777655444442 33344567777888899998888887765322 345677
Q ss_pred HHHHHHHhhcCCCHHHHHHHHhhcC-CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 256 GGALIEFYCGCEAFDGAMRVYDRLE-NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
++-|.-.|++- ++++-.+.++-.- +-+. ..+++++-+...|.++.-++..-. +++.|
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNi---pKviracE~ahLW~ElvfLY~~yd------------------E~DnA 323 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNI---PKVLRAAEQAHLWAELVFLYDKYE------------------EYDNA 323 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCC---TTTHHHHTTTTCHHHHHHHHHHHT------------------CHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccH---HHHHHHHHHHhhHHHHHHHHhcch------------------hHHHH
Confidence 88888888775 3444444443322 1111 234444444444444433333222 22222
Q ss_pred HHH--------HhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005732 335 KRL--------FEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406 (680)
Q Consensus 335 ~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 406 (680)
... |+.-.-.++.+ ...|...|-.-|..|.... +..--.++.-+. ..+.++ .+++
T Consensus 324 ~ltMi~h~~~Aw~h~~Fkdii~----------KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh~-----RvV~ 386 (624)
T 3lvg_A 324 IITMMNHPTDAWKEGQFKDIIT----------KVANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDHT-----RAVN 386 (624)
T ss_dssp HHTTTSCHHHHCCGGGGTTTGG----------GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCST-----TTHH
T ss_pred HHHHHhCChhhccHHHHHHHHH----------HcchHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCChH-----HHHH
Confidence 110 10000000000 1233444444444333321 111111111110 000000 1112
Q ss_pred HhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------CCHHHHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-------------PNVAAWTALMNG 473 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~ 473 (680)
.+.+.|+..-+..++..... ..+..+-.++-+.|....+++.-....+.... +-......-...
T Consensus 387 ~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~L 463 (624)
T 3lvg_A 387 YFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYL 463 (624)
T ss_dssp HHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHH
Confidence 22222222222222211111 12333334455555556665554444333322 223333344455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
|.+++++++++.+.++ . ..|.-.+.....+|+.+-+.++++-..+.| +..+|...+-.|...=+.+-+
T Consensus 464 Ykkn~rw~qsi~l~Kk---D------klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvV 531 (624)
T 3lvg_A 464 FKGNNRWKQSVELCKK---D------SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 531 (624)
T ss_dssp HHTTCHHHHHSSCSST---T------CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHH
T ss_pred HHhcccHHHHHHHHHh---c------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHH
Confidence 6777888877765422 1 122233455667888888888888888755 556777777777777778888
Q ss_pred HHHHH
Q 005732 554 EEFIK 558 (680)
Q Consensus 554 ~~~~~ 558 (680)
+++--
T Consensus 532 lElaW 536 (624)
T 3lvg_A 532 LETAW 536 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87743
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1.3e-06 Score=71.84 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=54.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHHHHH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DA---VVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSNIYA 611 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 611 (680)
+...+...|++++|.+.+++. ...| +. ..+..++.++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455556666666655554 1122 12 355556666666777777777777777776666 455666777777
Q ss_pred hcCCchHHHHHHHHHhhC
Q 005732 612 VLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~ 629 (680)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666553
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=8.5e-06 Score=68.58 Aligned_cols=111 Identities=11% Similarity=-0.059 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGAL 572 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 572 (680)
...+..+...+...|++++|.+.|++..+.. |+ ...+..+..+|...|++++|++.+++. ...| +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444445555555555555555555322 22 345555566666666666666666655 2233 57777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
..++...|++++|...++++++.+|+++..+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888889999999999999999999998777766666543
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=1.5e-05 Score=68.52 Aligned_cols=128 Identities=10% Similarity=-0.034 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.+++..... +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888887743 2246777778888888888888888888888654 33567788888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHc
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-DAVVWGAL--LSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
...|++++|.+.+++. ...| +...+..+ +..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999998888876 3333 44455333 3346678899999888877644
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=6e-06 Score=68.56 Aligned_cols=111 Identities=9% Similarity=-0.108 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSA 575 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 575 (680)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++. ...| +...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45566666666777777777777777766543 234566677777777777777777777766 2233 57788888888
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCC-----CCchHHHHHHH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKK-----PISAYVILSNI 609 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~ 609 (680)
+...|++++|+..++++++..|+ +......+..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 88999999999999999998887 44444444444
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=5.9e-07 Score=72.41 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=51.8
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 547 SGHLHEAEEFIKDM-PI---EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
.|++++|++.|++. .. .| +...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 13 345566666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhC
Q 005732 622 IRKRLTHL 629 (680)
Q Consensus 622 ~~~~~~~~ 629 (680)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766553
No 168
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=2.9e-06 Score=80.68 Aligned_cols=93 Identities=6% Similarity=-0.103 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
+..+...+...|+ +++|...|++..+... .+...|..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 7 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 7 LKEQGNRLFVGRK-YPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444455555555 5666666666655432 245555556666666666666666666655543 22344555555666
Q ss_pred hcCCCHHHHHHHHhhcC
Q 005732 264 CGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~ 280 (680)
...|++++|...|+...
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666665544
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=0.00043 Score=66.39 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=109.7
Q ss_pred HHHHHHHhhcC---CCccchhhHHHHHHHhcC-CHHHHHHHHHHhcc---CChhHHHHHHHHHhcc-C-ChhhHHHHHhh
Q 005732 270 DGAMRVYDRLE---NPCLNASNSLINGLISMG-RIEDAELIFNRLTE---ANSISYNSMIKGYAVY-G-QVDDSKRLFEK 340 (680)
Q Consensus 270 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~ 340 (680)
++|+++++.+. |.+...|+.-..++...| .+++++..++.+.. .+..+|+.-...+... + +.++++.++++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34455544444 444444455555555556 47777777777766 3344666665566555 5 78888999999
Q ss_pred cCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 005732 341 MPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHE--------KALQLYMTMRKLAIDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 412 (680)
+.+.+ +.|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+
T Consensus 151 ~L~~d--------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 151 SLLPD--------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HTSSC--------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHhC--------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 98887 678888887666666655565 8999999998864 346667777777776666
Q ss_pred C-------hHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 413 S-------LQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 413 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
. ++++.+.+...+... +.|...++-+-..+.+.|+.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 5 577778887777766 66777777666666665543
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=3.2e-06 Score=86.97 Aligned_cols=117 Identities=6% Similarity=-0.068 Sum_probs=90.1
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 585 (680)
.+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..++.++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556777777777777777543 234677777788888888888888888776 3344 678888999999999999999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 005732 586 ERAAQKMFGLDKKPISAYVILSNI--YAVLGKWGKKMDIRKR 625 (680)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 625 (680)
+..++++++.+|+++.++..++.+ +.+.|++++|++.+++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999888888 8889999999999883
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=3.5e-06 Score=69.16 Aligned_cols=92 Identities=8% Similarity=0.007 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC-------CchHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP-------ISAYVILS 607 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~ 607 (680)
+..+...+...|++++|...+++. . .+.+...+..++..+...|++++|...++++++..|++ +.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333444444445555555444443 1 12234445555555555555555555555555555443 44555555
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 005732 608 NIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 556666666666666555544
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=1.5e-05 Score=65.23 Aligned_cols=105 Identities=11% Similarity=-0.034 Sum_probs=68.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C---HHHHHHHHHHHH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-D---AVVWGALLSACW 577 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~l~~~~~ 577 (680)
+...+...|++++|...|+++.+...... ...+..+..++.+.|++++|.+.+++. ...| + +..+..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445566666666666666664332211 135555666677777777777777665 2223 2 566777888888
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
..|++++|...++++++..|+++........+
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999999999999886554444433
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=2.7e-06 Score=83.18 Aligned_cols=150 Identities=10% Similarity=-0.077 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45677778888889999999999999887 4565442 223344444433221 2367788899
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH-hcCCchHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA-VLGKWGKKM 620 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 620 (680)
|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..+..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3344 68889999999999999999999999999999999999998888844 457788888
Q ss_pred HHHHHHhhCCCc
Q 005732 621 DIRKRLTHLEVK 632 (680)
Q Consensus 621 ~~~~~~~~~~~~ 632 (680)
+.+++|....+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 899888766543
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00017 Score=68.77 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 464 VAAWTALMNGYSHHG--LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL-VNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
..+|+.-...+...+ .+++++.+++++.+...+ |...|+.-.-.+...|. ++++++.++.+.+.. +-+...|+..
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R 185 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 334444333333333 244555555555543221 33444433333334444 345555555555433 2234444433
Q ss_pred HHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 005732 541 VDLLGRS--------------GHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW-----------MNMEVGERAAQKMF 593 (680)
Q Consensus 541 ~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~ 593 (680)
...+.+. +.++++++++++. ...| |...|+.+-..+... +-++++++.+++++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 3333332 3355566655554 2223 455555444444333 34677777777777
Q ss_pred cCCCCCCchHHHHHHHH---HhcCCchHHHHHHHHHhhC
Q 005732 594 GLDKKPISAYVILSNIY---AVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 629 (680)
+..|++.-++..++.+. ...|..+++...+.++.+.
T Consensus 266 e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 266 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 77777643333333221 2346666777777777654
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=1.5e-05 Score=71.24 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-D----------------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
+..+...+.+.|++++|++.+++. ...| + ...+..+..++...|++++|+..++++++.+|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 334445555555555555555544 1111 1 367888888999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++.++..++.+|...|++++|.+.+++..+.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=7e-06 Score=66.39 Aligned_cols=97 Identities=9% Similarity=-0.077 Sum_probs=66.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM 580 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 580 (680)
..+...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|+..+++. ...| +...+..++.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455666777777777777776543 235666667777777777777777777766 3344 5777888888888899
Q ss_pred CHHHHHHHHHHHHcCCCCCC
Q 005732 581 NMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~ 600 (680)
++++|+..++++++.+|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999888764
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=6.1e-06 Score=81.64 Aligned_cols=139 Identities=9% Similarity=-0.050 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...+..+...+.+.|++++|+..|++..+. .|... .....+++. .. .+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 345666777777888888888888777651 11110 000111110 00 11235677788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..++..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4555 688889999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 005732 622 I 622 (680)
Q Consensus 622 ~ 622 (680)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.20 E-value=1.5e-05 Score=77.92 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=57.6
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN----------------VAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
.+...+..+...+.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..+++..+
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999987753 22 24555555555555555555555555555
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 005732 493 QDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 493 ~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 527 (680)
. .| +...+..+..++...|++++|+..|+++.+
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 22 244444444444444455555444444443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=6.4e-06 Score=70.55 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------Cch
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM----PIEL----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISA 602 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 602 (680)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++++..+.. +..
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444445555555555544443 0011 13455666777777888888888888877653221 345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 603 YVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+..++.++...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77888888899999999998888765
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=1.3e-05 Score=65.37 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++..+..... ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~---- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLI---- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHH----
Confidence 4455666666677777777777766663 333 5556666666666666666666666655321110 0000000
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 545 GRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
..++..++.++...|++++|+..|+++++..|+
T Consensus 83 ---------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ---------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 123445555666667777777777777666664
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=7.3e-06 Score=67.18 Aligned_cols=108 Identities=7% Similarity=0.019 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC----HHHHHHHH
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P----IELD----AVVWGALL 573 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~----~~~~~~l~ 573 (680)
..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. . ..++ ...+..++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333344444444444444444444322 123344444444555555555555555443 1 1122 55667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.++...|++++|...++++++..| ++.....+..+...
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788888888888888888888887 44556555555443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=2.1e-06 Score=69.16 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005732 512 AGLVNEGMKIFRSMKSYG--VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|++.+++. ...| ++..+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666666542 1223455666677777777777777777766 2333 57778888888889999999999
Q ss_pred HHHHHHcCCCCCCchH
Q 005732 588 AAQKMFGLDKKPISAY 603 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~ 603 (680)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9999999988886543
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=1.3e-05 Score=81.67 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=91.5
Q ss_pred HhccCCHHHHHHHHHHHHh---cCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKS---YGVVP----TLEHYTCVVDLLGRSGHLHEAEEFIKDM---------PIELD-AVVWGA 571 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 571 (680)
+...|++++|..++++..+ .-+.+ ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456677777776666652 11111 2455677777777778888777777664 23443 566888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 005732 572 LLSACWFWMNMEVGERAAQKMFG-----LDKKPISA---YVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 636 (680)
|+..|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++....+.|-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999977 57887655 5678888889999999999999998865444443
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=8.8e-05 Score=77.63 Aligned_cols=168 Identities=10% Similarity=-0.027 Sum_probs=131.4
Q ss_pred hHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 005732 449 INDAQASFSSISS---PNVAAWTALMNGYSHHGL----------GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG-- 513 (680)
Q Consensus 449 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-- 513 (680)
.++|.+.++.+.. .+...|+.-..++...|+ ++++++.++++.+...+ +...|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3456666666553 344566665555555555 88999999999985433 5777777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG-HLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW----------- 579 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 579 (680)
+++++++.++++.+.... +...|+.-..++.+.| .+++++++++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 779999999999976533 6778887777888888 899999999988 4555 688888887777653
Q ss_pred ---CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchH
Q 005732 580 ---MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 580 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (680)
+.++++.+.+++++..+|++..+|..+.+++.+.|++++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.9e-05 Score=62.46 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL---DAVVWGALLSA 575 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 575 (680)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344455566666777777777777666543 234556666777777777777777777765 2233 47777888888
Q ss_pred HHhc-CCHHHHHHHHHHHHcCCCCCC
Q 005732 576 CWFW-MNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 576 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 600 (680)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.2e-05 Score=82.18 Aligned_cols=162 Identities=7% Similarity=-0.110 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHh----cCCCC-ChhH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNA----ATFVGVLSACVRAGLVNEGMKIFRSMKS----YGVVP-TLEH 536 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~ 536 (680)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.|.++++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777776665421 11121 1222233334456778888887776652 22222 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---CC----Cc
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-----P--IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDK---KP----IS 601 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 601 (680)
+..+...|...|++++|.+++++. + ..+ ...++..++..|...|++++|..++++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667788888888888888887765 1 122 255677777888888888888888888876532 22 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456667777788888888888776654
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=4.2e-05 Score=78.59 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=56.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
+.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455555566655555552 232 4555555555555666666666665555442 2234555555555666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005732 553 AEEFIKDM-PIEL-DAVVWGALLSA--CWFWMNMEVGERAAQ 590 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 590 (680)
|.+.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66655554 1122 22233333333 555566666666666
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.6e-06 Score=68.89 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYV 604 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 604 (680)
+...+..+...+...|++++|++.+++. ... .++..+..++.++...|++++|+..++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666777788888888888888776 333 367888899999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCCchHHHHHHHHH
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
.++.++...|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8899999999888887765443
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00044 Score=66.03 Aligned_cols=242 Identities=9% Similarity=0.004 Sum_probs=165.1
Q ss_pred hHHHHHHHH---HHhCCChH-HHHHHHHHHHHCCCCCChhh-HHHHHHHhcccCC----------hHHHHHHHHHHHhcC
Q 005732 364 VTWNSMISG---YVQNNLHE-KALQLYMTMRKLAIDRTRST-FSVLFHACSCLGS----------LQQGQLLHAHLVKTP 428 (680)
Q Consensus 364 ~~~~~li~~---~~~~~~~~-~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 428 (680)
..|..+... ..+.|.++ +|+++++.+.. +.|+..| ++.--..+...+. ++++..++..+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 344444433 34556654 89999999987 4565544 3332222222222 577888888888876
Q ss_pred CCchHhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHH
Q 005732 429 FESNVYVGTSLVDMYSRCG--SINDAQASFSSISS---PNVAAWTALMNGYSHHGL-GSEAVLLFEIMLEQDIVPNAATF 502 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~ 502 (680)
+.+..+|+.-...+.+.| .++++.+.++.+.+ .|..+|+--...+...|. ++++++.++++++..+. |...|
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 677778877777777777 48899999988874 677888888878888888 58999999999986533 56666
Q ss_pred HHHHHHHhcc--------------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-----------CChHHHHHHH
Q 005732 503 VGVLSACVRA--------------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-----------GHLHEAEEFI 557 (680)
Q Consensus 503 ~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~ 557 (680)
+.....+.+. +.++++++.+....... +-|...|+.+-..+.+. +.++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 6555444433 45788999999988654 44677777665555554 4578888888
Q ss_pred HhC-CCCCCH-HHHHHHHHHH---HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 558 KDM-PIELDA-VVWGALLSAC---WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 558 ~~~-~~~p~~-~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+++ ...|+. ..+..++... ...|..++....+.++.+++|....-|..+...+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 887 455653 3333332211 1367888999999999999999866666655443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=9.5e-06 Score=67.55 Aligned_cols=72 Identities=10% Similarity=-0.070 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-P-------IELD-AVVW----GALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.|..+..++.+.|++++|+..+++. . +.|+ ...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655544 2 3675 5677 889999999999999999999999999998665
Q ss_pred HHHHH
Q 005732 603 YVILS 607 (680)
Q Consensus 603 ~~~l~ 607 (680)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54433
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=1e-05 Score=69.47 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC-chHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI-SAYVILSNIY 610 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 610 (680)
...|..+..+|.+.|++++|+..+++. ...| ++..|..++.++...|++++|...|+++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888888889999988888876 3344 688899999999999999999999999999999986 4455555444
Q ss_pred H
Q 005732 611 A 611 (680)
Q Consensus 611 ~ 611 (680)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.05 E-value=1.6e-05 Score=61.59 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++..+..++..+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367888899999999999999999999999999999999999999999999999999999998764
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=1.6e-05 Score=77.69 Aligned_cols=150 Identities=6% Similarity=-0.028 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788888999999999999988653 33221 122233333332221 136777888889
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCCHHHHHH
Q 005732 511 RAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSAC-WFWMNMEVGER 587 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~-~~~g~~~~a~~ 587 (680)
+.|++++|+..+++..... +.+...|..+..+|...|++++|.+.|++. ...|+ ...+..+.... ...+..+++..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654 346778888999999999999999999987 45564 44555555442 34667888899
Q ss_pred HHHHHHcCCCCCC
Q 005732 588 AAQKMFGLDKKPI 600 (680)
Q Consensus 588 ~~~~~~~~~p~~~ 600 (680)
.|+++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999999874
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=2.3e-05 Score=77.42 Aligned_cols=113 Identities=5% Similarity=0.007 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIEL-DAVVWGALLSACW 577 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 577 (680)
...+..+...+.+.|++++|++.|++..+.- +. .......+++. ...| +...|..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888887776420 00 00000111111 1223 4677888999999
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998875
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=2.3e-05 Score=59.32 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 563 ELDAVVWGALLSACWFWMN---MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|++.|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4578888888888865554 799999999999999999999999999999999999999999999987543
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=2.3e-05 Score=80.17 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF 578 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 578 (680)
...+..+...+.+.|++++|+..|+++......... + ..+...+ .. .-....|..+..++.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~-~~----~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKA-SE----SFLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence 445666666777777777777777776642211100 0 0000000 00 0115678889999999
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998754
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=2.9e-05 Score=66.36 Aligned_cols=132 Identities=12% Similarity=0.021 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCC-Chh
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PN----AATFVGVLSACVRAGLVNEGMKIFRSMKSYG----VVP-TLE 535 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 535 (680)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555566666666666666665542100 11 1345556666667777777777776665211 111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777654 1111 144567777788889999999999998877543
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00029 Score=71.71 Aligned_cols=157 Identities=9% Similarity=0.033 Sum_probs=76.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCch
Q 005732 370 ISGYVQNNLHEKALQLYMTMRKLAIDRTR----------------STFSVLFHACSCLGSLQQGQLLHAHLVKT-PFESN 432 (680)
Q Consensus 370 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 432 (680)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999998875432211 12445555666666666666666555432 10111
Q ss_pred H----hHHHHHHHHHHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CC--
Q 005732 433 V----YVGTSLVDMYSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ--DI-- 495 (680)
Q Consensus 433 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~-- 495 (680)
. .+.+.+...+...|+.+.|.++++.... .-..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222233334555555555443321 11234444555555555555555555544431 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 496 VPN-AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 496 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
+|. ...+..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 111 2334444455555555555555555444
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=3.3e-05 Score=58.42 Aligned_cols=81 Identities=21% Similarity=0.182 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...+..+...+...|++++|++.+++. .. +.+...+..+..++...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777765 22 3356777788888888888999999999988888888888888888877
Q ss_pred hcC
Q 005732 612 VLG 614 (680)
Q Consensus 612 ~~g 614 (680)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.93 E-value=2.4e-05 Score=62.51 Aligned_cols=78 Identities=9% Similarity=-0.031 Sum_probs=62.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 552 EAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 552 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+|++.+++. ...| +...+..++..+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3334 57778888888888999999999999999999988888899999999999999999999888764
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=8.5e-06 Score=67.66 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=60.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 546 RSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN----------MEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
+.+.+++|.+.+++. ...| ++..|..+..++...++ +++|+..|+++++++|+.+.+|+.++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555554 2233 55566666665555544 56888999999999999888899999998877
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 005732 614 G-----------KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 614 g-----------~~~~A~~~~~~~~~~~ 630 (680)
| ++++|++.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 4 7888999888887754
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=9.4e-05 Score=61.22 Aligned_cols=89 Identities=8% Similarity=-0.073 Sum_probs=47.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh---
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV--- 612 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 612 (680)
|...|...+..++|.+.|++.....++..+..|...|.. .+++++|..+|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333344444444444444444222344455555555554 55666666666666554 344556666666666
Q ss_pred -cCCchHHHHHHHHHhhCC
Q 005732 613 -LGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 613 -~g~~~~A~~~~~~~~~~~ 630 (680)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666665554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=7.1e-05 Score=59.07 Aligned_cols=68 Identities=4% Similarity=-0.065 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
++...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34667888889999999999999999999999999999999999999999999999999999987543
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=8.1e-05 Score=75.87 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=89.4
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCc---hH
Q 005732 542 DLLGRSGHLHEAEEFIKDM---------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKPIS---AY 603 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~ 603 (680)
..+...|++++|+.++++. +..|+ ..+++.|+..|...|++++|+.+++++++ ++|+++. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466789999999988765 13332 56789999999999999999999999987 4677654 48
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 604 VILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
..|+.+|..+|++++|..++++..+--. ..-| ..||....+...+.+.-.+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876321 1111 369998888888777766554
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.70 E-value=0.00061 Score=71.28 Aligned_cols=156 Identities=10% Similarity=0.028 Sum_probs=125.3
Q ss_pred HHcCC-hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 475 SHHGL-GSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGL----------VNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 475 ~~~~~-~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
.+.|. .++|++.++++.. +.|+ ...|+.--..+...|+ ++++++.++.+..... -+..+|..-..
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34454 4688999999999 4565 5556655555555565 8999999999997654 36778887778
Q ss_pred HHHhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc----
Q 005732 543 LLGRSG--HLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM-NMEVGERAAQKMFGLDKKPISAYVILSNIYAVL---- 613 (680)
Q Consensus 543 ~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 613 (680)
++.+.| ++++++++++++ ...| +...|+.-...+...| .++++++.++++++.+|.+..+|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888899 779999999998 3344 7888988888888888 899999999999999999999999999998875
Q ss_pred ----------CCchHHHHHHHHHhhCCCcc
Q 005732 614 ----------GKWGKKMDIRKRLTHLEVKK 633 (680)
Q Consensus 614 ----------g~~~~A~~~~~~~~~~~~~~ 633 (680)
+++++|++.+++.....+..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 56789999998887765543
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.0002 Score=71.80 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=85.5
Q ss_pred HHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCc---hHH
Q 005732 543 LLGRSGHLHEAEEFIKDM------PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKPIS---AYV 604 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 604 (680)
.+.+.|++++|++++++. ...|+ ..+++.++.+|...|++++|+.+++++++ ++|++|. .+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566667766666543 02222 55788888899999999999999999876 4566654 488
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
.|+.+|..+|++++|..++++..+-- ...- ...||...+++..|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIM-RVTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH-HHhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987631 1111 1379999999999998888776
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.00074 Score=55.71 Aligned_cols=112 Identities=9% Similarity=-0.087 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 005732 478 GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEA 553 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 553 (680)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46789999999999987 44444 6677777788899999999999865 66778888888888 8899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCC
Q 005732 554 EEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 597 (680)
.++|++....-++..+..|...|.. .++.++|..+++++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999988444678888889998888 8999999999999988754
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00017 Score=54.38 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356778888889999999999999999999999999999999999999999999999999988753
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=2.6e-07 Score=89.29 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
.++.+|..+-.+|...+.+.-|.-.--.+. +.|+ ....++..|...|.+++-+.+++...... ......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 356667777777777777665543332222 1121 22334556667777777777776665433 45566667776
Q ss_pred HHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCChhHHHH
Q 005732 441 DMYSRCGSINDAQASFSSISS-----------PNVAAWTALMNGYSHHGLGSEAVL 485 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~ 485 (680)
-.|++- ++++..+.++...+ .....|.-++-.|..-.+++.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 666654 45555555544332 234567777777777777776653
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=0.0001 Score=61.15 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=37.4
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHcCCCCCC
Q 005732 550 LHEAEEFIKDM-PIEL-DAVVWGALLSACWFW-----------MNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 600 (680)
+++|+..|++. .+.| +...|..++.+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666665 3444 466666777776655 589999999999999999984
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00031 Score=70.35 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=75.6
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCc---hHHHHHH
Q 005732 547 SGHLHEAEEFIKDM---------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKPIS---AYVILSN 608 (680)
Q Consensus 547 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 608 (680)
.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++ ++|+++. .+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 12332 56788899999999999999999999876 4666654 4889999
Q ss_pred HHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHH
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLE 667 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (680)
+|..+|++++|..++++..+--. ..- ...||...+++..|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIME-VAH-----------------GKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH-HHc-----------------CCCChHHHHHHHHHh
Confidence 99999999999999999876321 111 136888777777665
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00045 Score=54.87 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 518 GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 518 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
|++.+++..+.. +.+...+..+...|...|++++|++.+++. ...| +...+..++.++...|++++|...++++++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555432 234556666666677777777777776665 2233 5667778888888888888888888888888
Q ss_pred CCCC
Q 005732 596 DKKP 599 (680)
Q Consensus 596 ~p~~ 599 (680)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7754
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.00048 Score=52.86 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=45.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DAV-VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
....+.+.|++++|.+.+++. ...| +.. .+..++.++...|++++|+..|+++++.+|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667778888888877776 3333 456 677777777778888888888888888888776655
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.001 Score=54.47 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG---HLHEAEEFIKDM-PIE-L--DAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
....+.+-|.+....+. ++..+.-.+..++.+.+ +.++++.++++. ... | +...+..+..++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555554443 56666666666666666 455666666665 222 3 2445555666666777777777
Q ss_pred HHHHHHHcCCCCCCch
Q 005732 587 RAAQKMFGLDKKPISA 602 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~ 602 (680)
++++.+++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 7777777777766433
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.002 Score=64.41 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCC
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM---------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKP 599 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 599 (680)
.+++.|..+|...|++++|+.++++. +..|+ ..+++.|+..|...|++++|+.+++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556666666666666666666554 13443 55688888899999999999999999877 56777
Q ss_pred Cch
Q 005732 600 ISA 602 (680)
Q Consensus 600 ~~~ 602 (680)
|.+
T Consensus 421 p~~ 423 (433)
T 3qww_A 421 PYI 423 (433)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.12 E-value=0.0024 Score=48.84 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 575 ACWFWMNMEVGERAAQKMFGLDKKPIS-AYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555555555544 5555555555555555555555555443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.011 Score=56.59 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHH--HHcC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005732 463 NVAAWTALMNGY--SHHG---LGSEAVLLFEIMLEQDIVPN-AATFVGVLSAC 509 (680)
Q Consensus 463 ~~~~~~~l~~~~--~~~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 509 (680)
+...|...+++. ...+ ...+|..+|++.++ ..|+ ...+..+..++
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 444455544432 2222 34678889999888 5676 44454444443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.07 E-value=0.0046 Score=62.00 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=65.1
Q ss_pred HHhccCCHHHHHHHHHHHHhc---CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSY---GVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM---------PIELD-AVVWG 570 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 570 (680)
.+...|++++|.+++++..+. -+.|+ ..+++.++.+|...|++++|+.++++. +..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666666521 11221 345666777777777777777776654 23443 55688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCchHH
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFG-----LDKKPISAYV 604 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 604 (680)
.|+..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888999999999999999999877 5788765543
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0009 Score=51.49 Aligned_cols=67 Identities=3% Similarity=-0.127 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+...+..+..+|.+.|++++|++.|++. ...| +...|..++.++...|++++|+..+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4555666666777777777777777665 2233 46677777777888888888888888887776543
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.97 E-value=0.002 Score=58.93 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=69.9
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHcCCCCC-CchHHHHHHHHHhc-CCchHH
Q 005732 551 HEAEEFIKDM-PIELD---AVVWGALLSACWF-----WMNMEVGERAAQKMFGLDKKP-ISAYVILSNIYAVL-GKWGKK 619 (680)
Q Consensus 551 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 619 (680)
..|...+++. .+.|+ ...|..++..|.. .|+.++|.++|++++++.|+. ..+++.+++.+++. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555555554 45665 5567777777777 499999999999999999975 89999999999885 999999
Q ss_pred HHHHHHHhhCCCccCCc
Q 005732 620 MDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 620 ~~~~~~~~~~~~~~~~~ 636 (680)
.+.+++.....+..+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999999987776666
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.84 E-value=0.0044 Score=50.78 Aligned_cols=69 Identities=10% Similarity=-0.035 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFGLD-K-KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.++..+...+.+++.+.+ ++++++.+++.+++.+ | ++...++.|+.++.+.|++++|.++++++.+..+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 356677777777777766 5557777777777766 5 3456677777777777777777777777766443
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.62 E-value=0.013 Score=56.08 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh---cC-C-------hHHHHHHHHh
Q 005732 496 VPNAATFVGVLSACV--RA---GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR---SG-H-------LHEAEEFIKD 559 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~--~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~~~ 559 (680)
..+...|...+++.. .. .+..+|..+|++..+..+. ....|..+..+|.- .+ . ...+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445666666665543 33 3457899999999975422 23445444443321 11 1 1122222223
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 560 MP-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 560 ~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+. .+.++.++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++.....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 32 3457888888888888889999999999999999975 46778999999999999999999999887654
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.57 E-value=0.012 Score=45.43 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
+...++..++.++.+.|+++.|..++++++++.|+++.+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 35677888999999999999999999999999999976655544
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.50 E-value=1.3 Score=48.16 Aligned_cols=261 Identities=13% Similarity=0.009 Sum_probs=137.7
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCC--chHHHHHHHHhhcCCCHHHHHHHHhhcC-CCc--------c--chhhHHHHHH
Q 005732 228 CARLGAFCEGKVVHGLLIKCGFEFD--ESIGGALIEFYCGCEAFDGAMRVYDRLE-NPC--------L--NASNSLINGL 294 (680)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~--------~--~~~~~l~~~~ 294 (680)
....|+.+++..+++..+..+-..+ ...-..+.-+...+|.-+++..++.... .++ . ..-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777776665543210112 2223333344455555556777666544 111 1 1112233333
Q ss_pred HhcCC-HHHHHHHHHHhcc-CChhH--HH--HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHH
Q 005732 295 ISMGR-IEDAELIFNRLTE-ANSIS--YN--SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNS 368 (680)
Q Consensus 295 ~~~g~-~~~a~~~~~~~~~-~~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (680)
+..|. -+++...+..+.. .+... .. .+...+.-.|+.+....++..+.... ..+..-.-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--------------~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--------------HGNITRGLA 529 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--------------CHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--------------cHHHHHHHH
Confidence 33343 2344555555443 33221 11 23334556677776677766654422 223333444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hH---HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TF---SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
+.-++...|+.+.+..+++.+... .++. -| ..+.-+|+..|+......++..+.+.. ..+..-...+.-++.
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI 605 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhh
Confidence 555566788888888888888763 2222 22 234557888899888888888887653 334443333334444
Q ss_pred hcCChHHHHHHHhcCCC-CCHHHHHHHH--HHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 445 RCGSINDAQASFSSISS-PNVAAWTALM--NGYSHHGLG-SEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
..|+.+.+.++++.+.+ .|........ -+....|.. .+++.++..+.. .+|..+-...+.++
T Consensus 606 ~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 606 LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 56777777777775543 4444433333 333444444 578888888875 34554443333333
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.43 E-value=0.084 Score=41.43 Aligned_cols=141 Identities=10% Similarity=0.000 Sum_probs=100.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+.-.|..++..++..+.... .+..-|+-++--...+-+-+-..++++.+=+ ..| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHH
Confidence 34567788888888887763 2455566666555555555555555444331 222 2346666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 554 EEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
...+-.++ .+....+..+..+...|.-++-..++..++...+-+|+....++.+|.+.|+..+|.+++++.=++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77666664 345666777788889999999999999987777777899999999999999999999999999998864
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.43 E-value=0.13 Score=56.89 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=87.8
Q ss_pred hcCCCHHHHHH-HHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 264 CGCEAFDGAMR-VYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 264 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
...+++++|.+ ++..+. +......++..+.+.|..+.|+++.+.. ..-.......|+++.|.++.+.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC-
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh-
Confidence 34566666666 443221 0111255556666667777666554211 11122345678888888887654
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
.+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+....+.+
T Consensus 679 ------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 679 ------------------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 3467888899999999999999988887743 3344444455666666555555
Q ss_pred HHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
.....|. ++....+|.+.|++++|++++
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 5544441 233344566677777776654
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.40 E-value=0.023 Score=42.53 Aligned_cols=69 Identities=6% Similarity=0.030 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGH---LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+.++..+..+..++...++ .++|..++++. ...| ++.....++..+...|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3466677777777755444 68888888877 4445 67788888888999999999999999999999984
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.29 E-value=0.022 Score=44.76 Aligned_cols=87 Identities=11% Similarity=-0.026 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE---AEEFIKDM-PIE-L--DAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
....+.+-+.+....|. ++..+--.+..++.+..+..+ ++.++++. ... | .......|..++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444443332 444444445555555554444 55555554 211 2 2233344444555566666666
Q ss_pred HHHHHHHcCCCCCCc
Q 005732 587 RAAQKMFGLDKKPIS 601 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~ 601 (680)
++++.+++.+|++..
T Consensus 95 ~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 666666666665533
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.28 E-value=0.015 Score=44.76 Aligned_cols=66 Identities=18% Similarity=0.026 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLD-------KKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++..+..++..+...|++..|...++.+++.. +..+.++..|+.++.+.|++++|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667788889999999999999999998853 233567999999999999999999999999864
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.21 E-value=0.045 Score=60.57 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+...|..+...+.+.|+++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555555555555444443
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.09 E-value=1.7 Score=45.39 Aligned_cols=113 Identities=9% Similarity=-0.038 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAAT----FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
+.+.|..+|....... ..+... ...+.......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765432 122222 1222222333442344555555443322 23333333444445667777777
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 555 EFIKDMPIEL--DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 555 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+.|+.|+..+ ...-..-+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777774332 233334455556667777777777777764
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.01 E-value=0.16 Score=39.83 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.+..++.+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444444444555544444444322 234444444445555555555555555555555444
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.93 E-value=0.068 Score=41.99 Aligned_cols=68 Identities=10% Similarity=-0.064 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHcCC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 563 ELDAVVWGALLSACWFWMNMEV---GERAAQKMFGLD-K-KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.++..+-..+.+++.+.++... ++.+++.+++.+ | ......+.|+..+.+.|++++|.+.++.+++..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3666666677777766554443 777777777665 4 344566677777777777777777777776543
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.63 E-value=0.059 Score=42.46 Aligned_cols=66 Identities=8% Similarity=-0.054 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFGLDKK-PISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.|++.+--.+.+++.+.. +..+++.+++.+++.+|. ....++.|+.++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555555555555543 234555566666655553 244555666666666666666666666554
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.60 E-value=0.24 Score=39.60 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..|..++.+.|++++|.++.+.+++.+|++
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 333444445555555555555555555554
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.35 Score=40.64 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=53.6
Q ss_pred HHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005732 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIF 522 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 522 (680)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666666666666655432 122222334445555544444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005732 523 RSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP 561 (680)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (680)
+.....| -++.-...+.-.|+++++.+++.+.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4433322 12333344555666666666666554
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.82 E-value=4.6 Score=42.19 Aligned_cols=344 Identities=10% Similarity=-0.022 Sum_probs=177.1
Q ss_pred HHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHH
Q 005732 25 ITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGK 104 (680)
Q Consensus 25 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~ 104 (680)
+..+.+++++.....++.. +..+...-.....+....|+...|......+...|. ..+.....++..+...|.+.
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt--- 153 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD--- 153 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC---
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC---
Confidence 4455566777777776655 333444444456666667776667666666665542 23444455555544433221
Q ss_pred HHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCee--
Q 005732 105 QIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVV-- 182 (680)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 182 (680)
....-.-+......|+...|..+...+..........++.... +...+....... .++..
T Consensus 154 --------------~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~ 215 (618)
T 1qsa_A 154 --------------PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTR 215 (618)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHH
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhH
Confidence 1112222344555667777777766663222222233332222 222333333322 22211
Q ss_pred -eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHH----HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHH
Q 005732 183 -VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDS----VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGG 257 (680)
Q Consensus 183 -~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (680)
.+...+.-+.+. + .+.|...|......... +...... +.......+...++...+...... ..+.....
T Consensus 216 ~~~~~~~~rlar~-d-~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e 289 (618)
T 1qsa_A 216 QMAAVAFASVARQ-D-AENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHHHHH-C-HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHHHHHHHHHhc-C-HHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHH
Confidence 122233344443 5 79999999988765432 3333222 222333344345566666654433 23433444
Q ss_pred HHHHHhhcCCCHHHHHHHHhhcCC---CccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 258 ALIEFYCGCEAFDGAMRVYDRLEN---PCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
-.+....+.|+++.|...|+.+.. ....+..-+.+++...|+.++|..+|+.+..+. ..|..+. ..+.|..-..
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg~lA--a~~Lg~~~~~ 366 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVA--AQRIGEEYEL 366 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHH--HHHTTCCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHH--HHHcCCCCCC
Confidence 455556678999999999999982 234455667788889999999999999998753 2343332 2223321000
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPV---TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCL 411 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 411 (680)
....... ...... .-...+..+...|....|...+..+... .+......+.......
T Consensus 367 -----~~~~~~~------------~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~ 426 (618)
T 1qsa_A 367 -----KIDKAPQ------------NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNN 426 (618)
T ss_dssp -----CCCCCCS------------CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCh------------hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Confidence 0000000 000110 1122345577889999998888877653 2233333333334455
Q ss_pred CChHHHHHH
Q 005732 412 GSLQQGQLL 420 (680)
Q Consensus 412 ~~~~~a~~~ 420 (680)
|..+.+...
T Consensus 427 ~~~~~~v~~ 435 (618)
T 1qsa_A 427 QWWDLSVQA 435 (618)
T ss_dssp TCHHHHHHH
T ss_pred CChHHHHHH
Confidence 555554433
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.80 E-value=5.8 Score=43.25 Aligned_cols=277 Identities=10% Similarity=0.001 Sum_probs=149.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc----CCh--hHHHHHHHHHhccCChhhHHHHHhhcCcCCc-chhhhHhhhcccCCCCh
Q 005732 291 INGLISMGRIEDAELIFNRLTE----ANS--ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSI-ISLNTMISVIPEMERNP 363 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~----~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 363 (680)
.-+.+..|+.++++..+..... .+. ..-..+.-+....|..+++..++......+- ...+. ..+..
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~-------~~~~i 453 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDE-------DVDVL 453 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCH-------HHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccc-------ccHHH
Confidence 3456677888888888877664 122 2333344445566665667776666544210 00000 00112
Q ss_pred hHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 364 VTWNSMISGYVQNNL-HEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 364 ~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
..-.++.-+++-.|. -+++.+.+..+....- +.. ..-..+...+...|+.+....++..+.+.. ..+..-...+.
T Consensus 454 r~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalg 531 (963)
T 4ady_A 454 LHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHH
Confidence 222333344444443 3466777777665321 111 112233344567788888888888776643 22222233333
Q ss_pred HHHHhcCChHHHHHHHhcCCC-CCHH-HHH---HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 441 DMYSRCGSINDAQASFSSISS-PNVA-AWT---ALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
-++...|+.+.+..+++.+.. .++. -|. ++.-+|+..|+.....++++.+.+.. ..+......+.-++...|+.
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 344467888887777776652 3433 232 23446778888877777998888742 22233333333344556776
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL-HEAEEFIKDMPIELDAVVWGALLSACWF 578 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 578 (680)
+.+.++++.+.+.+ .|....-..+.-+....|+. .+|++.+..+...++..+-...+.++..
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 66777776666533 34433333444444445544 6788888888667776666555555543
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.39 E-value=1.4 Score=37.01 Aligned_cols=130 Identities=9% Similarity=0.057 Sum_probs=87.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3446789999998887665 3678899999999999999999999888764 445566677778877
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 552 EAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 552 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.-.++-+....+-+ ++....++...|+++++.++|.+.-+ +..-.......|-.+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 76665554421222 23344456678999999998876422 2222222233577778888877664
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.14 Score=54.51 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
..|...|+++.|+.+.++++..-|.+-.+|..|+.+|...|+|+.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44667899999999999999999999999999999999999999999998876
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.97 E-value=1.6 Score=40.07 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChH
Q 005732 481 SEAVLLFEIMLEQDIVPN---AATFVGVLSACVRA-----GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-GHLH 551 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 551 (680)
..|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++....+..-+..++..+.+.+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 455666666666 4555 34566666656553 66666666666666543322234444444444442 4444
Q ss_pred HHHHHHHh
Q 005732 552 EAEEFIKD 559 (680)
Q Consensus 552 ~A~~~~~~ 559 (680)
+|.+++++
T Consensus 258 ~a~~~L~k 265 (301)
T 3u64_A 258 GFDEALDR 265 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.83 E-value=0.27 Score=39.61 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHHHhcCCCCCh-hHHHHHHHH------HHhcCChHHHHHHHHhC-C--
Q 005732 498 NAATFVGVLSACVRAGLV------NEGMKIFRSMKSYGVVPTL-EHYTCVVDL------LGRSGHLHEAEEFIKDM-P-- 561 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~-- 561 (680)
|..+|...+....+.|++ ++..++|++.... ++|+. ..|...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 466777777777777877 7777788777743 33432 111121111 12345666666666655 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 562 IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 562 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.+- +..|.....--.++|+...|..++.+++.+.|.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 111 5555555555556667777777777766666665
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.60 E-value=4.9 Score=37.83 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=70.9
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHH----HHHHhCCCCCCHhhHHHHHHHHhc
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLV----STMHRSNVKLNETTFSTILSVCAQ 96 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~t~~~ll~~~~~ 96 (680)
|.++..-|.+++++++|.+++ |+ -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL----------~~-GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDIL----------AS-VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH----------HH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHH----------HH-HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 444555555555555555543 22 233455566666555544 444556777777777777766665
Q ss_pred cCChH-HHHHHHHHH----HHhC--CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHh
Q 005732 97 LNSLI-DGKQIHCLV----LKSG--YECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQ 162 (680)
Q Consensus 97 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 162 (680)
...-+ .-..+.+.+ .+.| ..-|+..+..+...|.+.+++.+|+..|-.-..+.+..+..++..+..
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 44211 112233333 3333 345677777778888888888888777742222223455444444433
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.34 E-value=0.54 Score=37.95 Aligned_cols=97 Identities=8% Similarity=0.158 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHCCCCCCH----HHHHHHHHHH---hccCCHHHHHHHHHHHHhc
Q 005732 462 PNVAAWTALMNGYSHHGLG------SEAVLLFEIMLEQDIVPNA----ATFVGVLSAC---VRAGLVNEGMKIFRSMKSY 528 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~---~~~g~~~~A~~~~~~~~~~ 528 (680)
.|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|..+.--| ...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666655555666 5666666666553 34431 1222222212 2245666666666666543
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 529 GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+-.. ...|-.....-.+.|++..|.+++.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 444544445555666666666666654
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.27 E-value=4.4 Score=37.88 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred HHHHcCCChhHHHHH----HHHHHhCCCCCCHhhHHHHHHHHhccCC-hHHHHHHHHHH----HHhC--CCCcchhhhhH
Q 005732 57 CGYSKWAKFDESLSL----VSTMHRSNVKLNETTFSTILSVCAQLNS-LIDGKQIHCLV----LKSG--YECFEFVGSGL 125 (680)
Q Consensus 57 ~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~~----~~~~--~~~~~~~~~~l 125 (680)
..+.+.|+...|-++ ++...+.+++++..+...++..+..... -..-.++.+.+ .+.| ...++..+..+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345556666665554 4445556777777777777666554321 11122333333 3333 23466777778
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHh
Q 005732 126 LFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQ 162 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 162 (680)
...|.+.|++.+|+..|-.-...+...+..++..+..
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 8888888888887776653222234444444443333
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.46 E-value=1.7 Score=34.27 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=48.7
Q ss_pred CCCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 530 VVPTLEHYTCVVDLLGRSGHL---HEAEEFIKDM-PIEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
..|++.+--.+..++.+..+. .+++.+++++ ...| ....+..|..++.+.|++++|.++.+.+++.+|++..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 344555544555555555443 2455555554 2223 355566677789999999999999999999999985543
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.24 E-value=4.5 Score=32.35 Aligned_cols=69 Identities=9% Similarity=-0.053 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFGLDKK-PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.|+..+-..+.+++.++. +..+++.+++.+++..|. .....+.|+..+.+.|++++|.++.+.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 577888888888888765 456788888888888775 456688888999999999999999998887654
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.00 E-value=7.2 Score=38.94 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHhc-----CCCchHhHHHHHHHHHHhcCChHHHHHHHhc
Q 005732 412 GSLQQGQLLHAHLVKT-----PFESNVYVGTSLVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (680)
|+++.|.+.+..+.+. ...........++..+...|+++...+.+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~ 81 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL 81 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6677777766555542 2344556667777777777877776655543
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.53 E-value=2.3 Score=35.06 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
+.-+.++.+|...|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56678999999999999999998765
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.38 E-value=9.1 Score=43.75 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=117.7
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------------
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--------------------- 461 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------- 461 (680)
.++..+...+..+.+.++.... +.++...-.+..++..+|++++|.+.|++...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566666666665544332 33444445567788889999999999977642
Q ss_pred -----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 005732 462 -----PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA----ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP 532 (680)
Q Consensus 462 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 532 (680)
.-..-|..++..+.+.+.++.++++-+..++....-+. ..|..++.++...|++++|...+-.+.+.. .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 01233667788888899999999888777763221121 246778889999999999999888777543 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHH------------HHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHc
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEE------------FIKDM-----PIELDAVVWGALLSACWFWMNMEVG-ERAAQKMFG 594 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 594 (680)
-..++..|+..++..|..+.-.. ++..- .....+..|..|..-....||+.+| ..+|+++.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 45677888888877776554332 22211 0122234455555555567776544 556777766
Q ss_pred C
Q 005732 595 L 595 (680)
Q Consensus 595 ~ 595 (680)
+
T Consensus 1050 L 1050 (1139)
T 4fhn_B 1050 Y 1050 (1139)
T ss_dssp H
T ss_pred h
Confidence 4
No 251
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.01 E-value=11 Score=32.82 Aligned_cols=122 Identities=3% Similarity=-0.057 Sum_probs=51.0
Q ss_pred hHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005732 35 VTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSG 114 (680)
Q Consensus 35 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 114 (680)
+....+.+.+..++...-...+.++...+.. .+...+..+... ++...-...+.+++..++.+....+.+.+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l---- 90 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL---- 90 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT----
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH----
Confidence 3333444444455555555555556555553 233333333322 34444444445555444432222222211
Q ss_pred CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcC
Q 005732 115 YECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCN 164 (680)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (680)
-.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 12344444444555555554433333333333333333333344443333
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.58 E-value=17 Score=35.36 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=25.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh-cCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKS-YGVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
++..|...|++.+|.+++.++.+ ..-..+ ..++..-+..|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44555555555555555555552 111111 122333344455555555555555443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.89 E-value=1.1 Score=43.95 Aligned_cols=56 Identities=7% Similarity=-0.077 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++.++...|+++++...++.++..+|-+-..+..++.+|.+.|+..+|++.|+++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445556666666666666666666665566666666666666666666665544
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.09 E-value=19 Score=33.52 Aligned_cols=168 Identities=10% Similarity=0.054 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVL----LFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.. +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778888899998887532 2234556777666555 3555566788888888777777665
Q ss_pred ccCCHH-HHHHHHHHHH----hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 005732 511 RAGLVN-EGMKIFRSMK----SYG--VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFW---M 580 (680)
Q Consensus 511 ~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g 580 (680)
.-..-+ .=.++++++. +.| ..-++.....+...|.+.|++.+|...|- .+..-++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 422111 1123333333 222 23467778888888888888888888776 32222455555555444333 3
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHH-HHHHHhcCCchHHHHHHHHHhhC
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVIL-SNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...++ ..+... +--|...|+...|..+++...++
T Consensus 183 ~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32222 222222 33455788999999998876643
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.37 E-value=2 Score=45.69 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcch-HH-HHHHHHhccCC-hhhHHHHHHHHHHh------CCCCCc---
Q 005732 186 KLISGYAKSVDGCEKALKLFRWMRESGENMPNEYT-FD-SVIRACARLGA-FCEGKVVHGLLIKC------GFEFDE--- 253 (680)
Q Consensus 186 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~-~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~--- 253 (680)
.++..+...+.-++.|+++|+++.+... .... |. .++..+...++ --+|.+++.+.++. ..++..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p---~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDP---IHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3444444454424779999999988652 3222 22 23333333322 22344444443321 112111
Q ss_pred --------hHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhc
Q 005732 254 --------SIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLT 311 (680)
Q Consensus 254 --------~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (680)
.....=.+.+...|+++.|+++-++.. |.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222445666888999999888877 7777888888999999999999888888775
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.16 E-value=25 Score=33.03 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLL----FEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
+|.++..-|.+.+++++|.+++.. =...+.+.|+...|..+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778888999999887532 12334566766555444 355556778888887777777665
Q ss_pred ccCC--HHHHHHHHHHHH----hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005732 511 RAGL--VNEGMKIFRSMK----SYG--VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 511 ~~g~--~~~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 582 (680)
.... ++. ..+.+++. +.| ..-++.....+...|.+.+++.+|...|- .+..+++..+..++..+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 5432 222 22333332 222 34567888888999999999999998884 3545555666555555444332
Q ss_pred HHHHHHHHHHHcCCCCCCchHHH-HHHHHHhcCCchHHHHHHHHHhh
Q 005732 583 EVGERAAQKMFGLDKKPISAYVI-LSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
|.....+.. .+--|...|+...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233333333 33456678899999998877665
No 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.95 E-value=18 Score=31.08 Aligned_cols=18 Identities=6% Similarity=-0.153 Sum_probs=7.4
Q ss_pred cchhhhhHHHHHHcCCCh
Q 005732 118 FEFVGSGLLFFYANCFEI 135 (680)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~ 135 (680)
+..+....+.++.+.|+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCcH
Confidence 333334444444444443
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.10 E-value=32 Score=33.37 Aligned_cols=239 Identities=10% Similarity=0.027 Sum_probs=115.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-----hHHHHHHHhcccCChHHHHHHHHHHHhc--CCCchHhHHHHHH
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-----TFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESNVYVGTSLV 440 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 440 (680)
-++..|...|++.+|.+++.++.+.--..|.. .+..-+..|...++..++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i- 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL- 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH-
Confidence 57888999999999999999887643222322 2444555666777777777777665532 222222222111
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHhcc
Q 005732 441 DMYSRCGSINDAQASFSSISSPNVAAWTALMNGYS-HHGLGSEAVLLFEIMLE----QDIVPN---AATFVGVLSACVRA 512 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~ll~~~~~~ 512 (680)
.. .-...+. ..+++..|...|-+..+ .| .|. ...|..+.. ...
T Consensus 183 ~~--------------------------~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~a-Ll~- 233 (394)
T 3txn_A 183 DL--------------------------QSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCK-IML- 233 (394)
T ss_dssp HH--------------------------HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHH-HHT-
T ss_pred HH--------------------------HhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHH-HHc-
Confidence 10 0111233 44555555554443321 11 111 122322222 222
Q ss_pred CCHHHHHHHHH-HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 513 GLVNEGMKIFR-SMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 513 g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
++..+...++. .....-..|....+..++.++ ..+++.+..++++... +..|+.....+ ..+.+ .--...+
T Consensus 234 ~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L 307 (394)
T 3txn_A 234 GQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNL 307 (394)
T ss_dssp TCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHH
T ss_pred CCHHHHHHHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHH
Confidence 22222222221 111111234444455555544 5678888788877763 34455422111 11100 0001122
Q ss_pred HHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEE
Q 005732 590 QKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAF 649 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (680)
.++. .|=..-....++..+.- ..+++...+-+|...|.- .....+.++.+...
T Consensus 308 ~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I---~a~IDq~~giv~~~ 360 (394)
T 3txn_A 308 CRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF---SGILDQGEGVLIVF 360 (394)
T ss_dssp HHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS---CEEEETTTTEEEEC
T ss_pred HHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe---eEEEcCCCCEEEEC
Confidence 2333 34444556677766643 678999999999988753 22344445555544
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.92 E-value=21 Score=30.97 Aligned_cols=105 Identities=11% Similarity=0.010 Sum_probs=40.6
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHh
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLIS 296 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 296 (680)
+...-...+.++.+.++.+....+.+ +.+ .++..+....+.++.+.|+.+....+.+-+..++.......+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444455544444332222222 221 23444444444444444443222222222223333333444455555
Q ss_pred cCCHHHHHHHHHHhcc-CChhHHHHHHHHHh
Q 005732 297 MGRIEDAELIFNRLTE-ANSISYNSMIKGYA 326 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~ 326 (680)
.+.. ++...+..+.. ++...-...+.++.
T Consensus 170 ~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 170 IGGE-RVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp HCSH-HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5542 23333333322 44444444444433
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.76 E-value=5.5 Score=29.25 Aligned_cols=51 Identities=10% Similarity=-0.060 Sum_probs=35.1
Q ss_pred HHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 005732 159 GYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESG 212 (680)
Q Consensus 159 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 212 (680)
.+...|++++|..+.+.+.-||...|-.|-..- .|- ..++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~r--lGl-~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCEWH--LGL-GAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHH--TTC-HHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHHh--ccc-HHHHHHHHHHHHhCC
Confidence 567788888888888888888888887776543 344 455555555666555
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.66 E-value=6.1 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005732 65 FDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKS 113 (680)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (680)
.-+..+-++.+....+-|++....+.+++|.+.+|+..|.++++-+...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3355666677777778888888888888888888888888888877644
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.50 E-value=7.8 Score=37.89 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----hcCCCCChhHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-----SYGVVPTLEHY 537 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 537 (680)
..++..+...|++++|+..+..+.... .-+...+..++.++.+.|+..+|.+.|+.+. +.|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566777888888888888877643 2267788888888888888888888887765 35777766553
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.43 E-value=6.4 Score=29.16 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++ +.|.. ..+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHH
Confidence 455566666667788888888888888888888888888888888 44333 44565554
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.15 E-value=6.2 Score=32.58 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMP 561 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~ 561 (680)
+..+|.+.+++++|+.+++.++
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4455555566666666665553
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.80 E-value=1.3 Score=40.00 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+.+.|++++|++.+..- +..| |...-..|+..++-.|++++|..-++-+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456778888888776654 3344 67777777888888888888888888888888875
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.61 E-value=44 Score=38.14 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=33.3
Q ss_pred hHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCC
Q 005732 124 GLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMP 177 (680)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 177 (680)
.++..+...|..+-+.++.... ..++...-.+...+...|++++|.+.|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4555556666666666554433 3444444555667778888888888887653
No 267
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.82 E-value=24 Score=30.23 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHh
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLIS 296 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 296 (680)
+...-...+.++.+.++.+....+.. +.. .++..+-...+.++.+.++.+....+...+..++...-...+.++..
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444555555555554433222222 221 33444444555555555443322222222223333333445555555
Q ss_pred cCCHHHHHHHHHHhc-cCChhHHHHHHHHH
Q 005732 297 MGRIEDAELIFNRLT-EANSISYNSMIKGY 325 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~ 325 (680)
.|..+ +...+..+. .++...-...+.++
T Consensus 165 ~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 165 IGGER-VRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp HCSHH-HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hCchh-HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55433 333333332 24444433333333
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.11 E-value=50 Score=32.82 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCchHh--HHHHHHHHHHhcCC
Q 005732 377 NLHEKALQLYMTMRKL-----AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT-PFESNVY--VGTSLVDMYSRCGS 448 (680)
Q Consensus 377 ~~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~ 448 (680)
|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5678888877666542 23344556778889999999999988877766654 3222221 12222333333333
Q ss_pred h--HHHHHHHhcCCC-------C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhc
Q 005732 449 I--NDAQASFSSISS-------P---NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ--DIVPN---AATFVGVLSACVR 511 (680)
Q Consensus 449 ~--~~A~~~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~ 511 (680)
. +.-..+.+.+.. - .......|...+...|++.+|..++..+... |..+. ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 233344444432 1 2234456788899999999999999998742 22211 2456667788899
Q ss_pred cCCHHHHHHHHHHHH----hcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 512 AGLVNEGMKIFRSMK----SYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
.+++..|..+++++. .....|+ ...+...+..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999875 2222222 345667777888899999998877765
No 269
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=77.52 E-value=42 Score=30.55 Aligned_cols=19 Identities=16% Similarity=-0.193 Sum_probs=9.0
Q ss_pred CcchHHHHHHHHhccCChh
Q 005732 217 NEYTFDSVIRACARLGAFC 235 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~ 235 (680)
+...-...+.++.+.|+..
T Consensus 205 ~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHHhCCHh
Confidence 4444444555555555433
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.21 E-value=29 Score=31.37 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=62.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCh
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV--PTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 550 (680)
...+.|+.++|++....-++.. .-|...-..++..+|-.|+++.|.+-++...+.... |....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3456677777777776666643 224555556667777777777777777666643221 112233333322
Q ss_pred HHHH-HHHHhC--C--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 551 HEAE-EFIKDM--P--IELDAVVWGALLSACW--FWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 551 ~~A~-~~~~~~--~--~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
+... ++|.-- + ......-...++.+.. ..|+.++|..+-.++++.-|..+.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 111111 0 1112223334444432 367777777777777777666543
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.28 E-value=21 Score=30.59 Aligned_cols=53 Identities=15% Similarity=0.022 Sum_probs=27.6
Q ss_pred cCChHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 547 SGHLHEAEEFIKDM---PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 547 ~g~~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.++..++.++|.-| ++ .--+..|......+...|++.+|..+|+..++..-.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33344555555544 21 2234555555555555666666666666666554433
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.23 E-value=22 Score=26.18 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666665552 22222222345667899999999988888899888877754 567877888877777776
Q ss_pred CCCCCCHHHHH
Q 005732 493 QDIVPNAATFV 503 (680)
Q Consensus 493 ~~~~p~~~~~~ 503 (680)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.18 E-value=24 Score=26.06 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|.+|.. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655542 22222222334667888888888888888888888877654 466777777777767766
Q ss_pred CCCCCCHHHHH
Q 005732 493 QDIVPNAATFV 503 (680)
Q Consensus 493 ~~~~p~~~~~~ 503 (680)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.41 E-value=25 Score=25.95 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=25.8
Q ss_pred HHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 005732 159 GYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESG 212 (680)
Q Consensus 159 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 212 (680)
.+...|++++|..+.+.+.-||...|-+|-..-. |- ..++..-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rl--Gl-~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEYRL--GL-GSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHH--TC-HHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhc--cc-HHHHHHHHHHHHhCC
Confidence 3455555555655555556666666665554433 22 233444443444433
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.97 E-value=17 Score=28.60 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++ +.|.. ..+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHH
Confidence 445555666667788888888888888888888888888888888 44333 44565554
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.74 E-value=55 Score=29.57 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=24.0
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchH--HHHHHHHhhcCCCHHHHHHHHh
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESI--GGALIEFYCGCEAFDGAMRVYD 277 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 277 (680)
+..++......+.+.+.+.|..++... ..+.+...+..|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344554555566666666665544321 1223333444555555555554
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.67 E-value=31 Score=27.20 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 379 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33555666666667788888888888888888888888888888776542 222445555543
No 278
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=67.98 E-value=3.1 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhcccCC
Q 005732 663 YATLEHLTANLNSVVLFD 680 (680)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~ 680 (680)
-|.+++++.+++|..+||
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 467899999999999998
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.99 E-value=40 Score=27.35 Aligned_cols=47 Identities=6% Similarity=0.047 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 585 GERAAQKMFGLDKK--PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 585 a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+..+|..+.+.+-. .+..|...+..+...|++.+|.++++.-.+.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 55556555554333 344466666666666666666666666555443
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.87 E-value=1.3e+02 Score=31.41 Aligned_cols=81 Identities=9% Similarity=-0.058 Sum_probs=41.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHh---ccC
Q 005732 438 SLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAATFVGVLSACV---RAG 513 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~---~~g 513 (680)
....++.-+|+++.|++.+-.....+.+.+...+. ..|-.... +.+..... .| ...+..|+..|. +..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~---~~gLL~~~----~~lls~~~~~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLA---SLKLFKID----SSTRLTKKPKR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHH---HTTC----------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHH---HcCCccCC----CcccccCCCcc-cccHHHHHHHHHHHhhcC
Confidence 34566677899999999887763333333333322 22322211 11111100 11 233666777665 468
Q ss_pred CHHHHHHHHHHHH
Q 005732 514 LVNEGMKIFRSMK 526 (680)
Q Consensus 514 ~~~~A~~~~~~~~ 526 (680)
++.+|.++|--+.
T Consensus 371 d~~~Al~Y~~li~ 383 (661)
T 2qx5_A 371 DPRVAVEYLVLIT 383 (661)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHh
Confidence 8999998887774
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.91 E-value=35 Score=29.23 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=41.5
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT 397 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 397 (680)
.+...++..+|..|...++. ..-...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIG------------TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSS------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCc------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33456777788877777762 45566677777778888888888888888777766663
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.48 E-value=67 Score=29.37 Aligned_cols=180 Identities=15% Similarity=0.106 Sum_probs=77.6
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcch--hhhhHHHHHHcCCChHH
Q 005732 60 SKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEF--VGSGLLFFYANCFEIEE 137 (680)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 137 (680)
+..|+.+-+.. +.+.|..++...-.+.+...+..|+.+-+ +.+++.|..++.. .-.+-+...+..|+.+-
T Consensus 39 ~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~ 110 (285)
T 3kea_A 39 IADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110 (285)
T ss_dssp HHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 34555544333 33444444332222334444555665433 4444556544321 12233445556677776
Q ss_pred HHHHHhhhcCC---chhHHHHHHHHHHhcCChhhHHHHhccCCCC-CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 005732 138 AKRVFDELHED---NELLWSLMLVGYVQCNLMSDAFDVFIKMPKK-DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGE 213 (680)
Q Consensus 138 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 213 (680)
+..+++.-... +..-|.+.+...+..|+.+-+.-+++.-... +...-...+...+..|. .+-+.-+++.-.....
T Consensus 111 v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~gad~n~ 189 (285)
T 3kea_A 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGH-VDMMILLLDYMTSTNT 189 (285)
T ss_dssp HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTC-HHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcCh-HHHHHHHHHcCCCCCc
Confidence 66666653222 2112233444445566666555555544332 22123333444445555 4443333333222221
Q ss_pred CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005732 214 NMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDES 254 (680)
Q Consensus 214 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (680)
. |..-.+..+...+..|+. ++.+.+++.|..++..
T Consensus 190 ~--~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 190 N--NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp T--CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred c--cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 1 222222223333444443 3444455556555543
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.63 E-value=58 Score=26.44 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=36.5
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR 396 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 396 (680)
+++..+|..|...++. ..-...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG------------TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTT------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCc------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3467777777777662 4455667777777777777777777777777766555
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.76 E-value=15 Score=35.09 Aligned_cols=25 Identities=12% Similarity=0.470 Sum_probs=14.8
Q ss_pred HHHHHHHhccCChhhHHHHHhhcCc
Q 005732 319 NSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 319 ~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
..++.-|...++.++|.+.++++..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccC
Confidence 4455555566666666666666643
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.38 E-value=47 Score=32.83 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCChhHHHH---
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSY-GVVPTLEHYTC--- 539 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~--- 539 (680)
++..+...|.+.|+++.|.+.|.++...-..+. ...+...++.+...+++..+...++++... .-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455688888999999999999999887433332 566777788888889999999888887621 11222222221
Q ss_pred -HHHHHHhcCChHHHHHHHHhC
Q 005732 540 -VVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 540 -l~~~~~~~g~~~~A~~~~~~~ 560 (680)
-+..+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122234567777777766554
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.47 E-value=65 Score=29.03 Aligned_cols=206 Identities=13% Similarity=0.043 Sum_probs=111.1
Q ss_pred HHHHHhhcCCChhHHHHhhccCCCCCh----hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHh
Q 005732 23 KAITECGRNGQLVTARNLFDQMPIRTV----VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE---TTFSTILSVCA 95 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~t~~~ll~~~~ 95 (680)
..+...++.|+++.+..+++.-...+. .-++ .+...+..|+.+ +++.+.+.|..++. ...+.+ ...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF-LLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 455566778999888888876543322 1222 344445566654 44555556655543 222333 3333
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcchh--hhhHHHHHHcCCChHHHHHHHhhhcCCchh------------HHHHHHHHHH
Q 005732 96 QLNSLIDGKQIHCLVLKSGYECFEFV--GSGLLFFYANCFEIEEAKRVFDELHEDNEL------------LWSLMLVGYV 161 (680)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~l~~~~~ 161 (680)
..|.. ++.+.+++.|..++... -.+.+...+..|+.+-+..+++.-...+.. .-.+.+...+
T Consensus 81 ~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 81 IAGSV----KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHTCH----HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HcCCH----HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 44554 45555666675554321 234455667778888877777764432211 0113345556
Q ss_pred hcCChhhHHHHhccCC-C---CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcch--HHHHHHHHhccCChh
Q 005732 162 QCNLMSDAFDVFIKMP-K---KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYT--FDSVIRACARLGAFC 235 (680)
Q Consensus 162 ~~~~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~ 235 (680)
..|+.+-+..+++... . .+....+.+..+.. .+. .....++++.+.+.|..+ +... -.+.+...+..|+.+
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~-~~~-~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALL-SSD-DSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH-CSC-TTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH-ccc-cchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHH
Confidence 6788887777776522 2 23333444444443 344 355667777888887654 4321 224455556667765
Q ss_pred hHHHHH
Q 005732 236 EGKVVH 241 (680)
Q Consensus 236 ~a~~~~ 241 (680)
-+..++
T Consensus 234 ~v~~Ll 239 (285)
T 1wdy_A 234 LVQRLL 239 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 287
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.02 E-value=45 Score=32.95 Aligned_cols=106 Identities=10% Similarity=-0.018 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHH--
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLE---QDIVPNAATF-- 502 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~-- 502 (680)
.+...+...|.+.|+++.|.+.|.++.. .-...+-.+++.+...+++..+...+.++.. .+..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567789999999999999999988763 3356788889999999999999999988764 3333333221
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHH
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTC 539 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 539 (680)
..-...+...+++..|.+.|-+....-...+...+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 1222334568999999999999885433334444433
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.92 E-value=95 Score=27.04 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=36.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchh--hhhHHHHHHcCC
Q 005732 59 YSKWAKFDESLSLVSTMHRSNVKLNET---TFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFV--GSGLLFFYANCF 133 (680)
Q Consensus 59 ~~~~~~~~~a~~~~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 133 (680)
.+..|+.+-...+++.+.+.|..++.. ..+. +...+..|+.+ +.+.+++.|..++... -...+...+..|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 344556665555555555554433321 1222 22223344433 3344444554433211 123344444556
Q ss_pred ChHHHHHHHhhh
Q 005732 134 EIEEAKRVFDEL 145 (680)
Q Consensus 134 ~~~~a~~~~~~~ 145 (680)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666555555543
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.05 E-value=36 Score=34.23 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
.++.++..|...+.++.|.+++.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444444444455555555555444
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.59 E-value=1.3e+02 Score=29.50 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=9.7
Q ss_pred HHhhcCCChhHHHHhhcc
Q 005732 26 TECGRNGQLVTARNLFDQ 43 (680)
Q Consensus 26 ~~~~~~g~~~~A~~~~~~ 43 (680)
..-++.|+++-+..+++.
T Consensus 19 ~~Aa~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 19 HVASFMGHLPIVKNLLQR 36 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 333445666666655554
No 291
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=55.61 E-value=1.2e+02 Score=27.42 Aligned_cols=18 Identities=6% Similarity=-0.204 Sum_probs=6.7
Q ss_pred CCchHHHHHHHHhhcCCC
Q 005732 251 FDESIGGALIEFYCGCEA 268 (680)
Q Consensus 251 ~~~~~~~~li~~~~~~g~ 268 (680)
++..+-...+.+....|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444433
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.22 E-value=48 Score=30.84 Aligned_cols=195 Identities=12% Similarity=0.132 Sum_probs=98.6
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCCh---hhHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCH--hhHHHHHHHH
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRTV---VSWNTMLCGYSKWAK-FDESLSLVSTMHRSNVKLNE--TTFSTILSVC 94 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~--~t~~~ll~~~ 94 (680)
...+|.-|-..|+.++|...++++..|.. ..-..+-.++-+... .+.+-.++..+...-+.++. ..|..++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 35688899999999999999999987742 222222233333322 33344566666542222222 1344444444
Q ss_pred hccC-ChHHHHHHHHHHH----HhCCCCcchhhhhHHHHHHcCCC--hHHHHHHHhhhc---------C-Cc--------
Q 005732 95 AQLN-SLIDGKQIHCLVL----KSGYECFEFVGSGLLFFYANCFE--IEEAKRVFDELH---------E-DN-------- 149 (680)
Q Consensus 95 ~~~~-~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~---------~-~~-------- 149 (680)
-... |...|...+..++ ..++-|-.+.....-..-...|. ...|..++..-. . .+
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Confidence 3322 3344444443333 33433332222211110000000 122222221000 0 01
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCCCe---eeHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCCC
Q 005732 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDV---VVWTKLISGYAKSVD-GCEKALKLFRWMRESGENM 215 (680)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~-~~~~a~~~~~~m~~~~~~~ 215 (680)
......++.-|...|+.++|...++++..|.- .....+..++-+.++ ..+.+..++..+.+.|+.+
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 11256788889899999999999999887621 223333444444322 1356778888888777664
No 293
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=53.84 E-value=1.2e+02 Score=29.03 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=44.3
Q ss_pred hhhHHHHHhhcCCChhHHHHhhccCCCCC----hhhHHHHHHHHHcCC-ChhHHHHHHHHHHhCCCCC
Q 005732 20 STNKAITECGRNGQLVTARNLFDQMPIRT----VVSWNTMLCGYSKWA-KFDESLSLVSTMHRSNVKL 82 (680)
Q Consensus 20 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~ 82 (680)
....+|.-|...|++++|.+.++++..|+ ...+..+..++-+.. ..+.+-.++..+...|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 45688999999999999999999998885 234555555554432 2345666777777766543
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.71 E-value=89 Score=25.74 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.-|+......+......++..+....+..-++- --+..|......+-..|++.+|..+|+..++....+
T Consensus 60 knD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344444444443333334433333333332222 234555555555556666666666666666655433
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.60 E-value=2e+02 Score=28.01 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=85.4
Q ss_pred hHHHHHHcCCChHHHHHHHhhhcCCchh--HHHHHHHHHHhcCChhhHHHHhccCCCCC---eeeHHHHHHHHHhCCCCh
Q 005732 124 GLLFFYANCFEIEEAKRVFDELHEDNEL--LWSLMLVGYVQCNLMSDAFDVFIKMPKKD---VVVWTKLISGYAKSVDGC 198 (680)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 198 (680)
+.+...+..|+.+-+.-+++.-..++.. .-.+.+...++.|+.+....+++.-...+ ...++.+ ...+..|+ .
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~g~-~ 159 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL-HVAAKYGK-V 159 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTC-H
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHcCC-H
Confidence 3444555666666666666543322110 01122334455666666666665433221 1112222 23334444 2
Q ss_pred HHHHHHHHHHHHcCCCCCCcch--HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchH--HHHHHHHhhcCCCHHHHHH
Q 005732 199 EKALKLFRWMRESGENMPNEYT--FDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESI--GGALIEFYCGCEAFDGAMR 274 (680)
Q Consensus 199 ~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~ 274 (680)
+ +++.+.+.|..+ +... -.+.+...+..|+.+ +.+.+.+.|..++... ....+...+..|+.+-+..
T Consensus 160 ~----~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 160 R----VAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230 (437)
T ss_dssp H----HHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred H----HHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 2 333334444433 2211 112334444555544 3344445554433221 1123344455666666666
Q ss_pred HHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhccC---ChhHHHHHHHHHhccCChhhHHHHHhh
Q 005732 275 VYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTEA---NSISYNSMIKGYAVYGQVDDSKRLFEK 340 (680)
Q Consensus 275 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~ 340 (680)
+++.-. ..+..- ...+...+..|+.+-...+++.-..+ +.... +.+...++.|+.+-+..+++.
T Consensus 231 Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 231 LLQYGGSANAESVQG-VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL-TPLHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp HHHTTCCTTCCCTTC-CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCCC-CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 665432 111111 12233344556655554444433221 11111 122333455666655555554
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.74 E-value=55 Score=29.24 Aligned_cols=52 Identities=8% Similarity=-0.069 Sum_probs=25.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHh--ccCChHHHHHHHHHH
Q 005732 59 YSKWAKFDESLSLVSTMHRSNVKLNET-------TFSTILSVCA--QLNSLIDGKQIHCLV 110 (680)
Q Consensus 59 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~ 110 (680)
.++.|+.+....+++.+.+.|..++.. ..+.|..++. +.|..+-++.+++..
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 345566666666666665555444422 2233333332 445555555555443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.49 E-value=46 Score=26.14 Aligned_cols=61 Identities=11% Similarity=0.241 Sum_probs=45.6
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCC
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRT---VVSWNTMLCGYSKWAK--FDESLSLVSTMHRSNVK 81 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~ 81 (680)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+....++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4578889999999999999999998773 3355666667766542 46678888888877644
No 298
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.44 E-value=1.3e+02 Score=24.90 Aligned_cols=83 Identities=8% Similarity=0.041 Sum_probs=55.2
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CC---------------CCCCc-hHHH
Q 005732 544 LGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFG--LD---------------KKPIS-AYVI 605 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---------------p~~~~-~~~~ 605 (680)
+.-.|.+..++-++.... ......|..| ++.+.+++..|...++.++. .+ |.+-+ .+..
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 445677777777777653 1223333332 35578888888888888873 22 22322 3667
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhC
Q 005732 606 LSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++.++...|+.+||++.+..--..
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhcCC
Confidence 889999999999999998775443
No 299
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=43.38 E-value=58 Score=32.82 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
-...++.|..+|.++..+.|++...|..|+.+....|+.-+|.=.+
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 3444555666666666666666666666666555555555544333
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.14 E-value=1.1e+02 Score=28.47 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhccCChh---HHHHHHHHHhccCC--hhhHHHHHhhcCcCCc
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTEANSI---SYNSMIKGYAVYGQ--VDDSKRLFEKMPHRSI 346 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 346 (680)
..++.-|...|+.++|...++++..|.-. +...+..++-+.++ .+....++..+.+.++
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 67788888899999999999998876322 33344444444332 3456666766665554
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.38 E-value=87 Score=29.64 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCCCe---eeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCC
Q 005732 155 LMLVGYVQCNLMSDAFDVFIKMPKKDV---VVWTKLISGYAKSVDGCEKALKLFRWMRESGEN 214 (680)
Q Consensus 155 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (680)
.++.-|...|+.++|...++++..|.- .....+..++-+.....+.+..++..+.+.|+.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 345555555555555555555554421 111111222222111134556666666655544
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.48 E-value=1.6e+02 Score=25.01 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=31.4
Q ss_pred hHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 550 LHEAEEFIKDMPIELDAV-------VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 550 ~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
++.|+.+|+.++..-+.. .-...+..|.+.|.+++|.+++++.++..+.+...-..|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 355666666664222211 112334467788888888888888877776664443333333
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.09 E-value=76 Score=28.09 Aligned_cols=90 Identities=8% Similarity=-0.086 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC--CCCC----CHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHH
Q 005732 53 NTMLCGYSKWAKFDESLSLVSTMHRS--NVKL----NETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLL 126 (680)
Q Consensus 53 ~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (680)
---++.+....++++|.+++++..+. ++++ +.......++.-.....-.-+..+.+.+ .. .++.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHH
Confidence 34578888899999999998877542 2222 1122223333333322333344444444 22 44555566677
Q ss_pred HHHHcCCChHHHHHHHhhh
Q 005732 127 FFYANCFEIEEAKRVFDEL 145 (680)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~ 145 (680)
..+.+.|+.++|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 8888888888888888765
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.69 E-value=41 Score=27.39 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=45.3
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCC---hhhHHHHHHHHHcCC--ChhHHHHHHHHHHhCCCC
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRT---VVSWNTMLCGYSKWA--KFDESLSLVSTMHRSNVK 81 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~ 81 (680)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.+ ..+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4678889999999999999999998773 335566666776643 245677888888877644
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.26 E-value=59 Score=32.68 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP-------ISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
...++.++..|...+.+++|..+..+.. .|.+ ...++.+|.++.-.++|.+|.+.+.....+.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5678889999999999999999999985 4443 22366789999999999999999998876543
No 306
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.23 E-value=2.6e+02 Score=26.58 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=41.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhccCCh---hHHHHHHHHHhccCC--hhhHHHHHhhcCcCCc
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTEANS---ISYNSMIKGYAVYGQ--VDDSKRLFEKMPHRSI 346 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 346 (680)
..++.-|...|+.++|...++++..|.- .+...+..++-+.++ .+...+++..+...++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 7888999999999999999999987642 234444445554332 4556777777776664
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.71 E-value=44 Score=29.88 Aligned_cols=54 Identities=7% Similarity=-0.162 Sum_probs=36.5
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCcchh-------hhhHHHHHH--cCCChHHHHHHHhhh
Q 005732 92 SVCAQLNSLIDGKQIHCLVLKSGYECFEFV-------GSGLLFFYA--NCFEIEEAKRVFDEL 145 (680)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~~ 145 (680)
...++.|+.+..+.+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344567889988889998888886666433 344443332 668888888777754
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.85 E-value=1.7e+02 Score=25.53 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 481 SEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
+++..+|..|...|+--. ...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 566677777777766544 55566666666777777778777777776665653
No 309
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.78 E-value=1.8e+02 Score=25.18 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=35.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcch--hhhhHHHHHHcCCChHHHHHHHhhh
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEF--VGSGLLFFYANCFEIEEAKRVFDEL 145 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 145 (680)
+...+..|+.+.++.+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 334456688888888888777777554432 2234555666778877777776643
No 310
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.65 E-value=1.5e+02 Score=26.88 Aligned_cols=48 Identities=15% Similarity=-0.070 Sum_probs=26.5
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhh
Q 005732 94 CAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDEL 145 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 145 (680)
.+..|+.+.+ +.+++.|..++..--.+.+...+..|+.+-+..+++.-
T Consensus 38 A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 38 AIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 3445665444 44445555444433344556666777777776666653
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.27 E-value=54 Score=26.66 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCC---eeeHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCC
Q 005732 154 SLMLVGYVQCNLMSDAFDVFIKMPKKD---VVVWTKLISGYAKSVD-GCEKALKLFRWMRESGEN 214 (680)
Q Consensus 154 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~-~~~~a~~~~~~m~~~~~~ 214 (680)
..++.-|...|+.++|...++++..|. ......+..++-+.+. ..+.+..++..+...++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 334445555555555555555554441 1122333334433221 134566777777666654
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.08 E-value=2.2e+02 Score=31.60 Aligned_cols=47 Identities=2% Similarity=-0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCc----hHHHHHHHHHhc
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGL-DKKPIS----AYVILSNIYAVL 613 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 613 (680)
..|..++..+-+.+.++-+.++.+.+++. .++++. .+..+.++.+..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 36677777777888888888888888864 344422 344444444443
No 313
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.99 E-value=1.3e+02 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=10.1
Q ss_pred HcCCChhHHHHHHHHHHhCC
Q 005732 60 SKWAKFDESLSLVSTMHRSN 79 (680)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~ 79 (680)
++.|+.+....+++.....+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 34455555555555544443
No 314
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.80 E-value=1.1e+02 Score=21.39 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=32.7
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCC
Q 005732 74 TMHRSNVKLNETTFSTILSVCAQLN-SLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCF 133 (680)
Q Consensus 74 ~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (680)
.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4556666665544 33445555443 45566777777766655555555555555555444
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.69 E-value=31 Score=25.45 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=20.5
Q ss_pred ChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHH
Q 005732 33 QLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDES 68 (680)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 68 (680)
+.++|+++++.++.+...+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455666666666666556666666666555544333
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.11 E-value=1.3e+02 Score=26.22 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=37.9
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR 396 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 396 (680)
+....+|..|...++. ..-...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG------------QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCS------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcc------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666777777777762 4455667777777777888888888888777766555
No 317
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=33.39 E-value=54 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=11.5
Q ss_pred hhHHHHHHcCCChHHHHHHHhhhc
Q 005732 123 SGLLFFYANCFEIEEAKRVFDELH 146 (680)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~ 146 (680)
..++.-|...|+.++|.+.++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444444455555555555443
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.16 E-value=2.1e+02 Score=23.49 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 005732 481 SEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTL 534 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 534 (680)
+.+..+|..|..+|+--. ...|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346677888887776554 555666666777778888888888888777666653
No 319
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.70 E-value=56 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=20.5
Q ss_pred HhCCCChHHHHHHHHHHHHcCCCCCCcc
Q 005732 192 AKSVDGCEKALKLFRWMRESGENMPNEY 219 (680)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 219 (680)
..++-+++.|...|.++...|-.||+.+
T Consensus 30 ~~~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 30 QDNNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred HHcCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3444449999999999988877775543
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.16 E-value=2.3e+02 Score=23.55 Aligned_cols=14 Identities=0% Similarity=0.200 Sum_probs=7.2
Q ss_pred cCCChhHHHHhhcc
Q 005732 30 RNGQLVTARNLFDQ 43 (680)
Q Consensus 30 ~~g~~~~A~~~~~~ 43 (680)
+.|+.+.+..+++.
T Consensus 14 ~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 14 NQRDTKKVKEILQD 27 (201)
T ss_dssp HTTCHHHHHHHHTC
T ss_pred HhccHHHHHHHHHc
Confidence 34555555555543
No 321
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.89 E-value=59 Score=28.95 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=29.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhc--cCChHHHHHHHHHHHH
Q 005732 56 LCGYSKWAKFDESLSLVSTMHRSNVKLNE-------TTFSTILSVCAQ--LNSLIDGKQIHCLVLK 112 (680)
Q Consensus 56 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~~~~ 112 (680)
+...++.|+.+....+++.+...|..++. ...+.|..++.. .|+.+-++.+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 33445566777766677766666654443 333344333322 2555555555544433
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.01 E-value=2.6e+02 Score=23.83 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHH---hCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 005732 367 NSMISGYV---QNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 367 ~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 412 (680)
--+|+++. +..+.+.|+-++.+|.+.| .|....-..++.+....|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34555554 4688999999999999999 666555555555554444
No 323
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.17 E-value=2.7e+02 Score=23.80 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=48.5
Q ss_pred hhcCCChhHHHHhhccCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHh----hHHHHHHHHhccCCh
Q 005732 28 CGRNGQLVTARNLFDQMPIR---TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNET----TFSTILSVCAQLNSL 100 (680)
Q Consensus 28 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----t~~~ll~~~~~~~~~ 100 (680)
-++.|+++.+..+++.-..+ +..-.+ .+...+..|+.+- ++.+.+.|..++.. ..+ .+...+..|+.
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~~~~ 89 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNST-PLHWATRQGHL 89 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBC-HHHHHHHHTCH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCC-hhHHHHHcCCH
Confidence 45567877777777653322 222222 3344455566543 33344444333211 122 22333334444
Q ss_pred HHHHHHHHHHHHhCCCCcch--hhhhHHHHHHcCCChHHHHHHHhh
Q 005732 101 IDGKQIHCLVLKSGYECFEF--VGSGLLFFYANCFEIEEAKRVFDE 144 (680)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 144 (680)
+ +.+.+++.|..++.. .....+...+..|+.+-+..+++.
T Consensus 90 ~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 90 S----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred H----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 3 444445555544322 112334444555666655555553
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.83 E-value=81 Score=23.18 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=12.6
Q ss_pred ChHHHHHHHhhhcCCchhHHHHHHHHHH
Q 005732 134 EIEEAKRVFDELHEDNELLWSLMLVGYV 161 (680)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 161 (680)
+.+.|.++++.+..+++..|..++.++.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~ 79 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLE 79 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 3444445555444444444444444443
No 325
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.54 E-value=26 Score=26.88 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=49.5
Q ss_pred HhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHH
Q 005732 27 ECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQ 105 (680)
Q Consensus 27 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~ 105 (680)
.|.++++++++..+..+ -..|.-.|..-+.+++.+-|.++++...+.| +...|.+.+-.|...-+++-+++
T Consensus 15 ~ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 15 VPRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred hhhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 36677777777655421 2235556777777888888888888888765 77778888888877766665544
No 326
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.14 E-value=1.5e+02 Score=20.54 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=37.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 488 EIMLEQDIVPNAATFVGVLSACVRAG-LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 488 ~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
+.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 345567777665443 3445555543 456677788887766666666666666676666654
No 327
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.77 E-value=2.6e+02 Score=23.15 Aligned_cols=81 Identities=5% Similarity=-0.014 Sum_probs=39.7
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchh--hhhHHHHHHcCCChH
Q 005732 59 YSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFV--GSGLLFFYANCFEIE 136 (680)
Q Consensus 59 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 136 (680)
.+..|+.+....++..-...--..+....+.+..+ +..|+. ++.+.+++.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 34566666666655432211011222333333333 344554 34455556665544322 233455556778888
Q ss_pred HHHHHHhh
Q 005732 137 EAKRVFDE 144 (680)
Q Consensus 137 ~a~~~~~~ 144 (680)
-+..+++.
T Consensus 87 ~~~~Ll~~ 94 (201)
T 3hra_A 87 ILAYMLKH 94 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777754
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.76 E-value=2.1e+02 Score=24.68 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=16.7
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 005732 541 VDLLGRSGHLHEAEEFIKDM-PIELDAV 567 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 567 (680)
+-.|.+.|.+++|.+++++. +..++..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 34566777777777777765 4333333
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.39 E-value=2.4e+02 Score=22.59 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEA 268 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (680)
+.+.+.|..+ ...-..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 16 ~~l~~~g~r~--T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKN--SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--C--HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCC--CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455666653 333445566666666677788888888777655565555445555555443
No 330
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=26.31 E-value=3.8e+02 Score=24.62 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=62.6
Q ss_pred HHHHhhcCCChhHHHHhhccCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHhc
Q 005732 24 AITECGRNGQLVTARNLFDQMP----IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE---TTFSTILSVCAQ 96 (680)
Q Consensus 24 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~t~~~ll~~~~~ 96 (680)
.+-..++.|+.+.+..++.+.. .+|..-.+. +..-+..|+.+ +++.+.+.|..++. ...+.+. ..+.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 100 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP-LHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLH-NACS 100 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-HHHH
T ss_pred hHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHH-HHHH
Confidence 3444557799999999998643 223332333 33344556654 44444555655543 2333333 3344
Q ss_pred cCChHHHHHHHHHHHHhCCCCcchh--hhhHHHHHHcCCChHHHHHHHhhhc
Q 005732 97 LNSLIDGKQIHCLVLKSGYECFEFV--GSGLLFFYANCFEIEEAKRVFDELH 146 (680)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 146 (680)
.|..+ +.+.+++.|..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 148 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 56554 5555666675554322 2244555667788888888877543
No 331
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.94 E-value=1.4e+02 Score=23.88 Aligned_cols=35 Identities=6% Similarity=-0.260 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCC
Q 005732 99 SLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCF 133 (680)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (680)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444444444443334444334444444444
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.46 E-value=2.6e+02 Score=26.33 Aligned_cols=18 Identities=0% Similarity=-0.129 Sum_probs=10.0
Q ss_pred HHhhcCCCHHHHHHHHhh
Q 005732 261 EFYCGCEAFDGAMRVYDR 278 (680)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~ 278 (680)
...+..|+.+-+.-+++.
T Consensus 249 ~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHc
Confidence 334455666666666554
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.04 E-value=2.2e+02 Score=22.80 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 488 EIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 488 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34556676654332 2344445455556677777777776655555555444444444444
No 334
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.60 E-value=3.3e+02 Score=23.29 Aligned_cols=197 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCcc--hhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHH--HHHHHHHHhcCChhhHHHHhccCC--
Q 005732 104 KQIHCLVLKSGYECFE--FVGSGLLFFYANCFEIEEAKRVFDELHEDNELLW--SLMLVGYVQCNLMSDAFDVFIKMP-- 177 (680)
Q Consensus 104 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~-- 177 (680)
.++++.+++.|..++. ..-.+.+...+..|+.+-+..+++.-...+.... .+.+...+..|+.+-+.-+++.-.
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 103 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q ss_pred --CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHH--HHHHHHhccCChhhHHHHHHHHHHhCCCCCc
Q 005732 178 --KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFD--SVIRACARLGAFCEGKVVHGLLIKCGFEFDE 253 (680)
Q Consensus 178 --~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 253 (680)
.++...++.+..+...... ++++.+.+.|..+ +..... +.+...+..|+.+ +.+.+.+.|..++.
T Consensus 104 ~~~~~~~g~t~L~~A~~~~~~------~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 104 VNCQDDGGWTPMIWATEYKHV------DLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHA 172 (237)
T ss_dssp TTCCCTTSCCHHHHHHHTTCH------HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTC
T ss_pred cccCCCCCCCHHHHHHHcCCH------HHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCC
Q ss_pred hH--HHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc
Q 005732 254 SI--GGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE 312 (680)
Q Consensus 254 ~~--~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (680)
.. ..+.+...++.|+.+-+.-+++.-. ..+..- .+.+......|+...++++.+.+.+
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHhhc
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.35 E-value=2.3e+02 Score=22.54 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=33.5
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE 267 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (680)
+.+.+.|..+ + ..-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 11 ~~l~~~g~r~-T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 11 ETLKETGVRI-T-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHTTCCC-C-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCC-C-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3455666653 3 3334455555555556677777777776665555555444455554444
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.92 E-value=3.4e+02 Score=23.14 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=24.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG 513 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 513 (680)
.+-.+.+.|+-++-+|++.| .|....-..++.+....|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 35567888888888888887 665555555555554443
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.78 E-value=2.2e+02 Score=26.82 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=19.4
Q ss_pred hhHHHHHHcCCChHHHHHHHhhhcCC
Q 005732 123 SGLLFFYANCFEIEEAKRVFDELHED 148 (680)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (680)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34666677778888888888888654
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.66 E-value=5.7e+02 Score=28.27 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=67.4
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST 400 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 400 (680)
++..|...+..+-+.++...+. .++..--.+..+|...|++++|.+.|++.- .|+..+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------------------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~ 876 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------------------SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQ 876 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------------------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCS
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccc
Confidence 5556666777776666554442 333333467788999999999999998763 333222111
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcC----CCCCH----HHHHHHHH
Q 005732 401 FSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSI----SSPNV----AAWTALMN 472 (680)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~l~~ 472 (680)
... ......++... +.. .....-|..++..+-+.+-++-+.++-+.. ...|. ..|+.+.+
T Consensus 877 ~~~----------~~~~~~ll~~~-e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~ 944 (950)
T 4gq2_M 877 FAV----------LREFQEIAEKY-HHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLK 944 (950)
T ss_dssp CGG----------GHHHHHHHHHT-TTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred ccc----------hhhhhhccCcc-ccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 000 00111111100 000 112235667777777777777766554433 22232 35666777
Q ss_pred HHHHcC
Q 005732 473 GYSHHG 478 (680)
Q Consensus 473 ~~~~~~ 478 (680)
+.+..|
T Consensus 945 ~a~a~g 950 (950)
T 4gq2_M 945 TACAAG 950 (950)
T ss_dssp HHHHHC
T ss_pred HHhhCC
Confidence 666544
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.61 E-value=1.9e+02 Score=23.22 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=33.7
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCC
Q 005732 73 STMHRSNVKLNETTFSTILSVCAQLN-SLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFE 134 (680)
Q Consensus 73 ~~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (680)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3455666665554333 334444444 566677777777766655555555445555555543
No 340
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.54 E-value=3e+02 Score=24.21 Aligned_cols=89 Identities=12% Similarity=0.013 Sum_probs=50.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQ--DIVPN----AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
--+..+....++++|+.++++..+. ++++. .......+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3567788889999999998876642 23321 11112222222222222333344444422 445556666777
Q ss_pred HHHhcCChHHHHHHHHhC
Q 005732 543 LLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (680)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888888888888877665
No 341
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.97 E-value=1.4e+02 Score=31.44 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=50.5
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchH
Q 005732 550 LHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 550 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (680)
.+.|.++++.|+ ...............|++..|.++.+.++..+|++..+...++.+|.+.|--.+
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777777775 233444455566789999999999999999999998888888988887774433
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.84 E-value=1.3e+02 Score=23.42 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=29.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 005732 54 TMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLN 98 (680)
Q Consensus 54 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~ 98 (680)
.++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 456666666667778888888877766666666555555555544
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.64 E-value=3e+02 Score=23.49 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=12.2
Q ss_pred HHHHhhcCCChhHHHHhhcc
Q 005732 24 AITECGRNGQLVTARNLFDQ 43 (680)
Q Consensus 24 li~~~~~~g~~~~A~~~~~~ 43 (680)
.+...++.|+++....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 34455566777777666654
No 344
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.49 E-value=3.7e+02 Score=23.09 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHh---CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCC-----hHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 369 MISGYVQ---NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGS-----LQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 369 li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
+|+++.+ ..+.+.|+-++.+|.+.|-.|....-..++.+...-|. ...|...++.....|.+-........+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHhc
Q 005732 441 DMYSRCGSINDAQASFSS 458 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~ 458 (680)
-.++.+-+...+ ..++.
T Consensus 118 iyLA~APKSNs~-~A~~~ 134 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFK 134 (213)
T ss_dssp HHHHHSCCCCGG-GHHHH
T ss_pred HHHHcCCccHHH-HHHHH
No 345
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.33 E-value=6.9e+02 Score=26.14 Aligned_cols=82 Identities=7% Similarity=-0.034 Sum_probs=40.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcC--
Q 005732 55 MLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANC-- 132 (680)
Q Consensus 55 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 132 (680)
...++.-+|+++.|++.+... ...+...+...+..++-.+- -+.+..........-+..||..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhh
Confidence 455666678888888876644 23344555555555443332 11111111001123356677777655
Q ss_pred -CChHHHHHHHhhhcC
Q 005732 133 -FEIEEAKRVFDELHE 147 (680)
Q Consensus 133 -g~~~~a~~~~~~~~~ 147 (680)
.+..+|.+.|--+.-
T Consensus 369 ~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITL 384 (661)
T ss_dssp TTCHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHhc
Confidence 677777777766643
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.20 E-value=2.5e+02 Score=22.53 Aligned_cols=61 Identities=8% Similarity=0.073 Sum_probs=35.9
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLG-AFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEA 268 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (680)
+.|.+.|..+ + ..-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 6 ~~l~~~g~r~-T-~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKV-T-LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCC-C-HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCC-C-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3455666663 3 33345555665555 566788888888777655565555445555555443
No 347
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.97 E-value=2.2e+02 Score=22.27 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=29.5
Q ss_pred HHHcCCCCCCcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcC
Q 005732 208 MRESGENMPNEYTFDSVIRACARLG-AFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGC 266 (680)
Q Consensus 208 m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (680)
+.+.|..+ + ..-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.
T Consensus 9 l~~~g~r~-T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 9 LRKAGLKV-T-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHTTCCC-C-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCC-C-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 45556553 2 23334555555554 5566777777776665555554444444444433
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.82 E-value=1.3e+02 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 005732 54 TMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQL 97 (680)
Q Consensus 54 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~ 97 (680)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+...
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 45555655556666777777776665555555544444444433
No 349
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.53 E-value=4e+02 Score=22.66 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 005732 368 SMISGYV---QNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 368 ~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 412 (680)
.+|+++. +..+.+.|+-++.+|.+.|-.|....-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555554 46889999999999999987776665555555544433
No 350
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.42 E-value=4e+02 Score=22.65 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=28.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG 513 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 513 (680)
.+-.+.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 456788999999999999887776666565555554443
No 351
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.23 E-value=3e+02 Score=23.49 Aligned_cols=185 Identities=10% Similarity=-0.119 Sum_probs=0.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchh-------HHHHHHHHHH
Q 005732 89 TILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNEL-------LWSLMLVGYV 161 (680)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~ 161 (680)
+.+...+..|+.+.++.+++. ....+......-.+.+...+..|+.+-+..+++.-...... .-.+.+...+
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~ 83 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV 83 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH
Q ss_pred hcCChhhHHHHhccCCCCCee---------------eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 005732 162 QCNLMSDAFDVFIKMPKKDVV---------------VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIR 226 (680)
Q Consensus 162 ~~~~~~~A~~~~~~~~~~~~~---------------~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 226 (680)
..|+.+-+.-+++.-..++.. .-...+...+..|+ .+-+.-+++. ...+.. ....-.+.+.
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--ga~~~~-~d~~g~t~L~ 159 (232)
T 2rfa_A 84 INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS-EEIVRLLIEH--GADIRA-QDSLGNTVLH 159 (232)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC-HHHHHHHHHT--TCCTTC-CCTTSCCHHH
T ss_pred HcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCC-HHHHHHHHHC--CCCCCC-CCCCCCCHHH
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCC--------chHHHHHHHHhhcCCCHHHHHHHHhh
Q 005732 227 ACARLGAFCEGKVVHGLLIKCGFEFD--------ESIGGALIEFYCGCEAFDGAMRVYDR 278 (680)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (680)
..+..|+.+.+..+++.+.+.|..++ ...-.+-+...++.|+.+-+.-+++.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Done!