BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005735
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 7/285 (2%)
Query: 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGG----GDG 456
IY GG S LS LE Y PS L + ++ G LY GG DG
Sbjct: 20 IYTAGGYFRQS-LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 78
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
N+ + ++ Y+P ++W+ S++ + + ID I+A+GG +G S VE + +
Sbjct: 79 NTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPE 138
Query: 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576
+W ML +R + A LN +LYA GG+DG +NSAE + P + W I MN
Sbjct: 139 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTI 198
Query: 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAI 636
R + VL+ +YA GG+DG + S+E YD +W PM+ R LG V + I
Sbjct: 199 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKI 258
Query: 637 YVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSVVTV 680
YV+GG +G +D+VE + + W E+ G+ VT+
Sbjct: 259 YVLGGY-DGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 302
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 4/238 (1%)
Query: 401 IYLVGG----CDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGGGDG 456
+Y VGG DG++ S L+ Y P + M +++G +Y GG G
Sbjct: 66 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHG 125
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
H++VE Y P DEW + + + A ++ ++A+GG +G + E +
Sbjct: 126 CIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 185
Query: 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576
+W M R L+ +YA GGYDG + +NS ER+D WT +A M
Sbjct: 186 RNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHH 245
Query: 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 634
R + V GK+Y LGG+DG + S+E YDP +W M R +G AV E
Sbjct: 246 RSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTME 303
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 7/285 (2%)
Query: 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGG----GDG 456
IY GG S LS LE Y PS L + ++ G LY GG DG
Sbjct: 21 IYTAGGYFRQS-LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 79
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
N+ + ++ Y+P ++W+ S++ + + ID I+A+GG +G S VE + +
Sbjct: 80 NTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPE 139
Query: 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576
+W ML +R + A LN +LYA GG+DG +NSAE + P + W I MN
Sbjct: 140 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTI 199
Query: 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAI 636
R + VL+ +YA GG+DG + S+E YD +W PM+ R LG V + I
Sbjct: 200 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKI 259
Query: 637 YVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSVVTV 680
YV+GG +G +D+VE + + W E+ G+ VT+
Sbjct: 260 YVLGGY-DGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 303
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 4/238 (1%)
Query: 401 IYLVGG----CDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGGGDG 456
+Y VGG DG++ S L+ Y P + M +++G +Y GG G
Sbjct: 67 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHG 126
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
H++VE Y P DEW + + + A ++ ++A+GG +G + E +
Sbjct: 127 CIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 186
Query: 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576
+W M R L+ +YA GGYDG + +NS ER+D WT +A M
Sbjct: 187 RNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHH 246
Query: 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 634
R + V GK+Y LGG+DG + S+E YDP +W M R +G AV E
Sbjct: 247 RSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTME 304
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 3/239 (1%)
Query: 399 ESIYLVGGCDGDSWLSTLELYLPSCD---VIKTLKPMXXXXXXXXXXMLNGELYIFGGGD 455
+ IY++GG DG S LS++E + D V ++ PM L +Y+ GG D
Sbjct: 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 456 GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDL 515
G+ H ++E Y P D+W+ + + I+ +GG +GL + VE D
Sbjct: 123 GSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDP 182
Query: 516 DIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR 575
G W M KR A LN +Y GG+DG +++S E ++ R WT + +M
Sbjct: 183 HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242
Query: 576 RRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 634
R VL G+LYA+ G+DG++++ SIE YDP + SW M R G V++E
Sbjct: 243 PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 7/284 (2%)
Query: 395 LDPSESIYLVGGCDGD-SWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGG 453
L +E + +VGG S + +E Y P L + L+ +Y+ GG
Sbjct: 11 LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG 70
Query: 454 GDGNSWHNTVESYSPANDE---WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDV 510
DG S ++VE DE W S +N +G T+ + I+ GG +G + +
Sbjct: 71 YDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSM 130
Query: 511 EMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570
E D +I +W M R +GV+Y GGYDG +NS E++DP +WT +
Sbjct: 131 ERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190
Query: 571 ANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAA 630
M +R +A+LN +Y +GGFDG+A + S+E Y+ R SW + M R Y+GA
Sbjct: 191 TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT 250
Query: 631 VVKEAIYVIGGVKNGSEIVDTVERFKE-GQGWEEINSRAIGKRC 673
V++ +Y I G +G+ ++ ++E + WE + S +RC
Sbjct: 251 VLRGRLYAIAG-YDGNSLLSSIECYDPIIDSWEVVTSMGT-QRC 292
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 9/293 (3%)
Query: 394 HLDPSES--IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIF 451
H+ P IY GG S LS LE Y PS L + ++ G LY
Sbjct: 19 HMAPKVGRLIYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAV 77
Query: 452 GG----GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECF 507
GG DGN+ + ++ Y+P ++W+ ++ + + ID I+A+GG +G
Sbjct: 78 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 137
Query: 508 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYW 567
+ VE + + +W ML +R + A LN +LYA GG+DG +NSAE + P + W
Sbjct: 138 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 197
Query: 568 TKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYL 627
I MN R + VL+ +YA GG+DG + S+E YD +W PMK R L
Sbjct: 198 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 257
Query: 628 GAAVVKEAIYVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSVVT 679
G V + IYV+GG +G +D+VE + + W E+ G+ VT
Sbjct: 258 GITVHQGRIYVLGG-YDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 309
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 136/284 (47%), Gaps = 7/284 (2%)
Query: 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGG----GDG 456
IY GG S LS LE Y PS L + ++ G LY GG DG
Sbjct: 27 IYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
N+ + ++ Y+P ++W+ ++ + + ID I+A+GG +G + VE + +
Sbjct: 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576
+W ML +R + A LN +LYA GG+DG +NSAE + P + W I MN
Sbjct: 146 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI 205
Query: 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAI 636
R + VL+ +YA GG+DG + S+E YD +W PMK R LG V + I
Sbjct: 206 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRI 265
Query: 637 YVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSVVT 679
YV+GG +G +D+VE + + W E+ G+ VT
Sbjct: 266 YVLGGY-DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 7/284 (2%)
Query: 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGG----GDG 456
IY GG S LS LE Y PS L + ++ G LY GG DG
Sbjct: 27 IYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
N+ + ++ Y+P ++W+ + + + ID I+A+GG +G + VE + +
Sbjct: 86 NTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576
+W L +R + A LN +LYA GG+DG +NSAE + P + W I N
Sbjct: 146 RDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTI 205
Query: 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAI 636
R + VL+ +YA GG+DG + S+E YD +W P K R LG V + I
Sbjct: 206 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRI 265
Query: 637 YVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSVVT 679
YV+GG +G +D+VE + + W E+ G+ VT
Sbjct: 266 YVLGGY-DGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGVAVT 308
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 4/240 (1%)
Query: 444 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNG 503
+ G ++ GG +G+ TV+SY P D+WTS ++ + +L A ++ ++A+GG +G
Sbjct: 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG 119
Query: 504 LECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYD--GNEYMNSAERFD 561
S VE ++ +W M +R ++ + G+LYA GGYD + +++ E ++
Sbjct: 120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYN 179
Query: 562 PREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621
+ WT IA M+ RR + VLN LYA+GG DG + S+EVYDP +W M
Sbjct: 180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN 239
Query: 622 LSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFK-EGQGWEEINSRAIGKRCFMSVVTV 680
+ R G V +YV+GG +GS + +VE + W ++S R + V +
Sbjct: 240 MCRRNAGVCAVNGLLYVVGG-DDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI 298
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 3/239 (1%)
Query: 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGGGDGNSWH 460
++ VGG +G + T++ Y P D ++ M +LNG LY GG DG++
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGL 123
Query: 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN--GLECFSDVEMLDLDIG 518
++VE+Y+ ++EW +N + S+ + ++A+GG + +C S VE +
Sbjct: 124 SSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTN 183
Query: 519 KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRG 578
+W M +R LN +LYA GG+DG S E +DP + W ++A+MN R
Sbjct: 184 EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243
Query: 579 CHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW-MSGEPMKLSRGYLGAAVVKEAI 636
+ +NG LY +GG DGS + S+E Y+P W + M R Y G V+ + +
Sbjct: 244 NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 494 KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY 553
K+ + GG + VE D +W + + +R + G+++A GG++G+
Sbjct: 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR 75
Query: 554 MNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613
+ + + +DP + WT +ANM RR AVLNG LYA+GGFDGS + S+E Y+ +
Sbjct: 76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135
Query: 614 WMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGS-EIVDTVERF 655
W PM R +G VV +Y +GG S + + TVE +
Sbjct: 136 WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY 178
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 5/204 (2%)
Query: 463 VESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKWI 521
++ Y+ D W S+ + SLA + KI+ GG G E D W
Sbjct: 72 MDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131
Query: 522 RTRSMLQKRFALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHYWTKIANMNRRR 577
SML +R + E NG++Y GG GN +NS E +DP WT++ M R
Sbjct: 132 TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR 191
Query: 578 GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIY 637
H L + K++A+GG +G + ++E YD +L W PM + A V +Y
Sbjct: 192 KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVY 251
Query: 638 VIGGVKNGSEIVDTVERFKEGQGW 661
V+ G + + +E E W
Sbjct: 252 VLAGFQGVGRLGHILEYNTETDKW 275
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 447 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN---- 502
+ +FGG S ++P + WT + A DN ++ +GG
Sbjct: 14 RIALFGGSQPQS----CRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI 69
Query: 503 -GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYD-GNEYMNSAERF 560
++C++ V+ W R +LAA G +Y +GG + GN + E +
Sbjct: 70 KRMDCYNVVK------DSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECY 123
Query: 561 DPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS----AMVPSIEVYDPRLGSWMS 616
D R W +M +R H + NG +Y GG G+ ++ S EVYDP +W
Sbjct: 124 DTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183
Query: 617 GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF 655
PM +R G VK+ I+ +GG +NG +D VE +
Sbjct: 184 LCPMIEARKNHGLVFVKDKIFAVGG-QNGLGGLDNVEYY 221
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 401 IYLVGGCDGDSW----LSTLELYLPSCDVIKTLKPMXXXXXXXXXXMLNGELYIFGGGDG 456
IY+ GG G++ L++ E+Y P+ + L PM + +++ GG +G
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211
Query: 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 516
+ VE Y +EW + ++ A + + ++ + G G+ + + +
Sbjct: 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271
Query: 517 IGKWI 521
KW+
Sbjct: 272 TDKWV 276
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 489 ATIDNKIFAIGGGNGLECFSDVEM------LDLDIGKWIRTRSMLQKRFALAAAELNGVL 542
T N+++ +GG E D + LD +W+ + R E++ +
Sbjct: 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKI 112
Query: 543 YATGGYD--GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGG-FDGSA 599
Y G D ++S +DP W+++ N+ + H++ NG +Y LGG D
Sbjct: 113 YVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK 172
Query: 600 MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQ 659
+ +Y+P+ G W PMK R G A+ K I + GGV + +VE F
Sbjct: 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKT 231
Query: 660 GWEEINSRAIGKRCFMSVVTV 680
E+ + +R +S+V++
Sbjct: 232 NKWEVMTEFPQERSSISLVSL 252
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 9/204 (4%)
Query: 447 ELYIFGG--GDGNSWHNTVESY----SPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGG 500
++Y+ GG D + ++SY + EW P L + +D+KI+ + G
Sbjct: 58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAG 117
Query: 501 GN--GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG-YDGNEYMNSA 557
+ V D KW +++ K + NG++Y GG D + N
Sbjct: 118 KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV 177
Query: 558 ERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617
++P++ W +A M R +A+ GK+ GG + S+E +D + W
Sbjct: 178 FIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237
Query: 618 EPMKLSRGYLGAAVVKEAIYVIGG 641
R + + ++Y IGG
Sbjct: 238 TEFPQERSSISLVSLAGSLYAIGG 261
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 12/228 (5%)
Query: 380 ECMYEKLLESSDELH---LDPSESIYLVGG--CDGDSWLSTLELYLPSCDVIKT----LK 430
EC L E H + +Y+VGG D ++ L+ Y D + + L
Sbjct: 35 ECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94
Query: 431 PMXXXXXXXXXXMLNGELYIFGGGD--GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAG 488
P+ ++ ++Y+ G D + ++V Y P +W+ +L
Sbjct: 95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV 154
Query: 489 ATIDNKIFAIGG-GNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG 547
+ + I+ +GG + +C + V + + G W M R A G + GG
Sbjct: 155 ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG 214
Query: 548 YDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGF 595
+ S E FD + + W + + R SL L G LYA+GGF
Sbjct: 215 VTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGF 262
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 4/176 (2%)
Query: 470 NDEWTSRPSLNGTKGSLAGATIDNKIFAIGG---GNGLECFSDVEMLDLDIGKWIRTRSM 526
+ EW P L + N I+ +GG +G C V D KW + +
Sbjct: 76 DSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL 135
Query: 527 LQKRFALAAAELNGVLYATGGYDGN-EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL 585
+ ++Y GG + + +N +DP++ W ++A M R V
Sbjct: 136 PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH 195
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGG 641
+G++ G + + S EVY W E R L + +Y IGG
Sbjct: 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 448 LYIFGG-GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLE 505
+Y+ GG G N + Y P EW + T SL GAT+ D +I G
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTG 209
Query: 506 CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY---------MNS 556
S E+ + KW + Q+R +L+ L G LYA GG+ E +N
Sbjct: 210 LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELND 269
Query: 557 AERFDPREHYWTKI 570
R++ E W +
Sbjct: 270 IWRYNEEEKKWEGV 283
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 448 LYIFGG---GDGNSWHNTVESYSPANDEW-TSRPSLNGTKGSLAGATIDNKIFAIGG-GN 502
+Y+ GG DG ++V Y + +W S P G + +D ++ IGG G+
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMD-LVYVIGGKGS 159
Query: 503 GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDP 562
+C + + + D +W M R A +G + G +SAE +
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219
Query: 563 REHYWTKIANMNRRRGCHSLAVLNGKLYALGGF 595
++ W + R SL L G LYA+GGF
Sbjct: 220 TDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGF 252
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 19/195 (9%)
Query: 465 SYSPANDE-WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLE---------CFSDVEMLD 514
+Y PA +E + + S K ++ T +N++F GG E F + LD
Sbjct: 17 AYDPAANECYXASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76
Query: 515 LDIGKWIRTRSMLQKRFALAAAELNGVLYATGGY---DGNEYMNSAERFDPREHYWTKIA 571
+W+ + R E +Y GG DG ++S +D W +
Sbjct: 77 ---SEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD 133
Query: 572 NMNRRRGCHSLAVLNGKLYALGGFDGS--AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGA 629
+ H++ +Y +GG GS + + VYDP+ W PM+ +R GA
Sbjct: 134 PLPYVVYGHTVLSHMDLVYVIGG-KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192
Query: 630 AVVKEAIYVIGGVKN 644
V I V GV +
Sbjct: 193 TVHDGRIIVAAGVTD 207
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGG-FD 596
NG + TGG D + +D W +M RG S A + +G+++ +GG F
Sbjct: 258 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 313
Query: 597 GSAMVPSIEVYDPRLGSWMS 616
G + EVY P +W S
Sbjct: 314 GGVFEKNGEVYSPSSKTWTS 333
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 258 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 313
Query: 645 G 645
G
Sbjct: 314 G 314
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 332 EVAELKAFKTEQTLKMKE--------LEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMY 383
+AE+ F+ + ++ +V A A I+ LM S ND E
Sbjct: 161 SIAEINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFEGSP 220
Query: 384 EKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMXXXXXXXXXXM 443
+ +S DPS I D ++ +++ P +
Sbjct: 221 GGITLTSS---WDPSTGIV----SDRTVTVTKHDMFCPGISMDG---------------- 257
Query: 444 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG 500
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG
Sbjct: 258 -NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 310
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGG-FD 596
NG + TGG D + +D W +M RG S A + +G+++ +GG F
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 291
Query: 597 GSAMVPSIEVYDPRLGSWMS 616
G + EVY P +W S
Sbjct: 292 GGVFEKNGEVYSPSSKTWTS 311
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 291
Query: 645 G 645
G
Sbjct: 292 G 292
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG 500
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 288
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHS 291
Query: 645 G 645
G
Sbjct: 292 G 292
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNG 503
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG +
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHS 291
Query: 504 LECF 507
F
Sbjct: 292 GGVF 295
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGS 291
Query: 645 G 645
G
Sbjct: 292 G 292
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG 500
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 288
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 291
Query: 645 G 645
G
Sbjct: 292 G 292
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG 500
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 288
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 291
Query: 645 G 645
G
Sbjct: 292 G 292
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG 500
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 288
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 644
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 253 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 308
Query: 645 G 645
G
Sbjct: 309 G 309
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG 500
NG++ + GG D Y ++D W P + +G + AT+ D ++F IGG
Sbjct: 253 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 380 ECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP 431
E +Y + DE+ +DP + I ++ G DG W CD +K L P
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT------YGECDGLKGLFP 49
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 62 NYTDRKLHGIFEAASPGMMNINPYGWTDGSERTSYPAQVQIRVRMQCQPLNEEKFKPIIA 121
+Y + +LH A+P M N G T S+RT YP +V+I Q +++K +
Sbjct: 115 DYHNPRLHKFVTEAAPIDMTSNMNGSTY-SDRTKYPERVRIGSGRQFWRNDQDKGDQVAG 173
Query: 122 ANYY 125
A +Y
Sbjct: 174 AYHY 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,989,970
Number of Sequences: 62578
Number of extensions: 834712
Number of successful extensions: 2061
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 74
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)