Query 005735
Match_columns 680
No_of_seqs 394 out of 2367
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10539 Dev_Cell_Death: Devel 100.0 5.3E-62 1.2E-66 437.0 12.3 129 18-146 1-130 (130)
2 smart00767 DCD DCD is a plant 100.0 5.8E-62 1.3E-66 433.9 12.1 132 16-148 1-132 (132)
3 KOG4441 Proteins containing BT 100.0 6.5E-44 1.4E-48 405.7 32.7 283 396-680 282-568 (571)
4 PHA02713 hypothetical protein; 100.0 1.9E-39 4E-44 370.2 31.7 264 400-668 259-544 (557)
5 KOG4441 Proteins containing BT 100.0 4E-38 8.6E-43 358.4 27.8 255 378-632 312-568 (571)
6 PLN02153 epithiospecifier prot 100.0 9E-37 1.9E-41 329.3 33.0 273 385-657 19-338 (341)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 1.7E-35 3.7E-40 319.9 32.1 269 384-656 3-344 (346)
8 PLN02193 nitrile-specifier pro 100.0 3E-35 6.5E-40 330.0 34.2 272 385-657 162-467 (470)
9 PLN02193 nitrile-specifier pro 100.0 7.6E-35 1.7E-39 326.7 36.2 278 397-676 119-434 (470)
10 PHA02713 hypothetical protein; 100.0 8.3E-36 1.8E-40 340.3 26.2 241 378-621 283-544 (557)
11 PLN02153 epithiospecifier prot 100.0 1E-34 2.2E-39 313.4 32.6 245 421-665 4-292 (341)
12 TIGR03548 mutarot_permut cycli 100.0 1.4E-34 3E-39 309.9 30.8 259 392-651 7-321 (323)
13 PRK14131 N-acetylneuraminic ac 100.0 2.9E-34 6.4E-39 313.7 32.2 281 379-663 19-374 (376)
14 PHA03098 kelch-like protein; P 100.0 2.2E-34 4.7E-39 328.9 31.5 267 399-669 251-523 (534)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 2E-32 4.3E-37 296.0 30.5 247 429-680 1-320 (346)
16 PHA03098 kelch-like protein; P 100.0 1.6E-32 3.5E-37 313.4 31.1 233 393-625 289-526 (534)
17 PHA02790 Kelch-like protein; P 100.0 2.3E-32 5E-37 307.4 29.8 224 421-664 253-477 (480)
18 PHA02790 Kelch-like protein; P 100.0 2.9E-32 6.2E-37 306.7 29.0 209 397-618 270-478 (480)
19 TIGR03548 mutarot_permut cycli 100.0 9.1E-32 2E-36 288.2 28.7 246 434-680 2-302 (323)
20 KOG4693 Uncharacterized conser 100.0 1.8E-31 4E-36 262.6 22.4 258 387-644 12-313 (392)
21 PRK14131 N-acetylneuraminic ac 100.0 2.3E-30 4.9E-35 283.0 30.1 251 425-680 18-342 (376)
22 KOG4693 Uncharacterized conser 100.0 9.1E-28 2E-32 236.6 21.4 254 425-679 3-300 (392)
23 KOG0379 Kelch repeat-containin 99.9 3.2E-26 7E-31 256.9 27.1 287 383-669 55-373 (482)
24 KOG0379 Kelch repeat-containin 99.9 4.6E-26 1E-30 255.6 26.5 239 430-668 55-312 (482)
25 KOG1230 Protein containing rep 99.9 7.6E-24 1.7E-28 219.9 18.6 235 430-664 61-347 (521)
26 KOG1230 Protein containing rep 99.9 4.3E-23 9.3E-28 214.4 18.4 220 398-617 78-347 (521)
27 KOG4152 Host cell transcriptio 99.9 9.9E-23 2.2E-27 215.4 17.5 253 425-680 18-331 (830)
28 KOG4152 Host cell transcriptio 99.9 1.6E-22 3.4E-27 213.9 18.4 260 383-644 27-343 (830)
29 COG3055 Uncharacterized protei 99.7 6.7E-16 1.5E-20 159.6 22.6 271 380-656 28-372 (381)
30 COG3055 Uncharacterized protei 99.5 4.5E-13 9.8E-18 138.8 19.9 246 427-678 28-346 (381)
31 KOG2437 Muskelin [Signal trans 99.4 1E-13 2.2E-18 147.6 3.7 275 370-644 232-594 (723)
32 KOG2437 Muskelin [Signal trans 99.0 9.4E-11 2E-15 125.3 3.6 179 433-611 258-472 (723)
33 PF13964 Kelch_6: Kelch motif 99.0 1.1E-09 2.4E-14 84.1 6.6 49 435-483 1-50 (50)
34 PF13964 Kelch_6: Kelch motif 98.9 3.5E-09 7.6E-14 81.3 6.4 49 482-530 1-50 (50)
35 PF01344 Kelch_1: Kelch motif; 98.7 1.7E-08 3.8E-13 76.2 4.7 46 435-480 1-47 (47)
36 PF01344 Kelch_1: Kelch motif; 98.6 4.2E-08 9.1E-13 74.1 4.7 46 482-527 1-47 (47)
37 TIGR01640 F_box_assoc_1 F-box 98.5 2.9E-05 6.2E-10 79.2 24.5 194 414-612 14-230 (230)
38 PF13415 Kelch_3: Galactose ox 98.5 1.6E-07 3.4E-12 71.8 6.0 47 445-491 1-49 (49)
39 PF07646 Kelch_2: Kelch motif; 98.5 3.5E-07 7.7E-12 69.8 6.4 46 435-480 1-49 (49)
40 PF13415 Kelch_3: Galactose ox 98.5 3.6E-07 7.8E-12 69.8 6.1 47 398-444 1-49 (49)
41 smart00612 Kelch Kelch domain. 98.4 3.3E-07 7.1E-12 68.5 5.4 47 447-493 1-47 (47)
42 PF07646 Kelch_2: Kelch motif; 98.4 5.2E-07 1.1E-11 68.9 6.2 46 482-527 1-49 (49)
43 PF13418 Kelch_4: Galactose ox 98.4 2.6E-07 5.6E-12 70.5 4.2 46 435-480 1-48 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.3 1.2E-05 2.6E-10 82.2 15.2 152 510-675 48-216 (243)
45 PF13418 Kelch_4: Galactose ox 98.3 7.4E-07 1.6E-11 67.9 4.4 46 623-668 1-48 (49)
46 smart00612 Kelch Kelch domain. 98.3 1.2E-06 2.7E-11 65.4 5.3 47 400-446 1-47 (47)
47 TIGR01640 F_box_assoc_1 F-box 98.2 0.00021 4.5E-09 72.9 22.1 202 444-658 4-228 (230)
48 PF07250 Glyoxal_oxid_N: Glyox 98.2 2E-05 4.4E-10 80.6 13.8 149 415-576 47-211 (243)
49 PLN02772 guanylate kinase 98.1 1.6E-05 3.5E-10 86.2 11.2 84 433-518 22-110 (398)
50 PLN02772 guanylate kinase 98.0 2.4E-05 5.1E-10 84.9 10.9 84 480-565 22-110 (398)
51 PF13854 Kelch_5: Kelch motif 97.9 3.2E-05 6.9E-10 57.1 5.4 39 432-470 1-41 (42)
52 PF13854 Kelch_5: Kelch motif 97.8 5.5E-05 1.2E-09 55.8 5.5 39 479-517 1-41 (42)
53 PF03089 RAG2: Recombination a 97.3 0.034 7.3E-07 57.2 19.7 167 432-598 19-231 (337)
54 PF13360 PQQ_2: PQQ-like domai 97.3 0.25 5.3E-06 49.8 27.9 208 415-662 4-237 (238)
55 PRK11138 outer membrane biogen 97.3 0.12 2.6E-06 57.0 26.2 204 398-640 160-383 (394)
56 PRK11138 outer membrane biogen 97.2 0.22 4.8E-06 55.0 27.4 214 398-658 120-353 (394)
57 PF07893 DUF1668: Protein of u 97.1 0.054 1.2E-06 58.8 21.0 120 444-574 75-218 (342)
58 TIGR03300 assembly_YfgL outer 96.9 0.5 1.1E-05 51.6 26.6 206 398-640 145-368 (377)
59 TIGR03300 assembly_YfgL outer 96.8 0.82 1.8E-05 49.9 27.4 218 398-663 65-305 (377)
60 PF03089 RAG2: Recombination a 96.8 0.053 1.2E-06 55.8 16.0 152 495-646 41-232 (337)
61 PF13360 PQQ_2: PQQ-like domai 96.8 0.73 1.6E-05 46.3 24.9 182 394-613 32-233 (238)
62 cd00200 WD40 WD40 domain, foun 96.6 0.84 1.8E-05 45.4 24.5 193 391-613 13-210 (289)
63 PF08450 SGL: SMP-30/Gluconola 96.4 1.1 2.4E-05 45.7 23.3 209 398-639 11-243 (246)
64 PF07893 DUF1668: Protein of u 96.4 0.12 2.6E-06 56.1 16.7 119 491-620 75-217 (342)
65 KOG0310 Conserved WD40 repeat- 96.3 0.39 8.4E-06 52.8 19.7 218 394-644 75-301 (487)
66 PRK00809 hypothetical protein; 96.3 0.017 3.7E-07 54.5 8.3 97 22-120 5-112 (144)
67 cd00200 WD40 WD40 domain, foun 96.2 1.6 3.4E-05 43.4 24.4 220 392-644 56-283 (289)
68 KOG2055 WD40 repeat protein [G 96.1 0.26 5.6E-06 53.8 16.9 196 389-610 215-417 (514)
69 KOG2055 WD40 repeat protein [G 96.0 0.39 8.5E-06 52.5 17.5 194 445-669 224-428 (514)
70 TIGR03866 PQQ_ABC_repeats PQQ- 95.6 3.3 7.1E-05 42.5 26.6 183 400-614 2-191 (300)
71 PRK04792 tolB translocation pr 95.4 6 0.00013 44.6 28.4 235 413-668 197-435 (448)
72 PLN00181 protein SPA1-RELATED; 95.1 4.7 0.0001 48.9 25.0 187 392-611 488-691 (793)
73 PRK05137 tolB translocation pr 95.0 6.8 0.00015 43.8 24.4 211 393-618 207-420 (435)
74 KOG0310 Conserved WD40 repeat- 94.9 1.3 2.8E-05 48.8 17.1 188 444-665 78-280 (487)
75 PF08450 SGL: SMP-30/Gluconola 94.9 4 8.7E-05 41.6 20.3 185 445-660 11-215 (246)
76 TIGR03866 PQQ_ABC_repeats PQQ- 94.8 5.4 0.00012 40.8 26.1 241 393-671 36-291 (300)
77 PF02897 Peptidase_S9_N: Proly 94.6 7.4 0.00016 43.0 23.0 256 392-663 128-410 (414)
78 PF12768 Rax2: Cortical protei 94.5 1.4 3.1E-05 46.4 15.9 107 508-619 16-130 (281)
79 PF02191 OLF: Olfactomedin-lik 94.4 3.2 7E-05 43.0 18.1 183 445-640 30-237 (250)
80 PRK00178 tolB translocation pr 94.4 10 0.00023 42.1 27.7 180 461-658 223-406 (430)
81 PF12768 Rax2: Cortical protei 94.2 0.61 1.3E-05 49.1 12.5 119 402-525 2-130 (281)
82 TIGR02800 propeller_TolB tol-p 94.2 9.6 0.00021 41.9 22.8 166 395-572 197-363 (417)
83 PRK00178 tolB translocation pr 94.1 12 0.00026 41.6 24.1 200 394-610 205-406 (430)
84 TIGR02800 propeller_TolB tol-p 93.9 12 0.00026 41.1 27.1 229 413-661 169-400 (417)
85 PRK04922 tolB translocation pr 93.9 12 0.00025 42.0 22.9 202 395-612 211-413 (433)
86 PF03178 CPSF_A: CPSF A subuni 93.7 2.7 5.8E-05 45.0 16.7 123 508-642 62-191 (321)
87 PRK04922 tolB translocation pr 93.7 14 0.00031 41.2 26.7 182 461-660 228-413 (433)
88 PRK04792 tolB translocation pr 93.5 16 0.00034 41.2 23.6 166 394-572 224-391 (448)
89 PRK11028 6-phosphogluconolacto 93.4 12 0.00027 39.7 28.8 256 391-677 38-325 (330)
90 PLN00181 protein SPA1-RELATED; 93.1 19 0.00042 43.6 24.6 170 415-611 556-739 (793)
91 PRK13684 Ycf48-like protein; P 92.8 17 0.00036 39.3 28.4 258 371-666 29-297 (334)
92 PF05096 Glu_cyclase_2: Glutam 92.6 2.1 4.6E-05 44.5 13.0 110 487-612 49-159 (264)
93 KOG0281 Beta-TrCP (transducin 92.6 8.3 0.00018 41.1 17.2 80 510-598 342-421 (499)
94 PF05096 Glu_cyclase_2: Glutam 92.6 1.6 3.4E-05 45.4 12.0 98 535-642 50-148 (264)
95 PRK05137 tolB translocation pr 92.5 21 0.00045 39.9 27.6 191 413-618 181-374 (435)
96 PRK13684 Ycf48-like protein; P 91.6 22 0.00049 38.3 21.8 193 423-641 118-321 (334)
97 TIGR02658 TTQ_MADH_Hv methylam 91.6 24 0.00051 38.6 24.4 118 398-522 12-142 (352)
98 PTZ00421 coronin; Provisional 91.6 29 0.00064 39.7 23.8 200 393-616 81-296 (493)
99 PF02191 OLF: Olfactomedin-lik 91.6 14 0.00029 38.4 17.7 183 398-593 30-237 (250)
100 smart00284 OLF Olfactomedin-li 91.6 15 0.00032 38.2 17.7 198 422-639 19-241 (255)
101 PRK03629 tolB translocation pr 91.4 28 0.0006 39.0 26.0 216 412-644 177-395 (429)
102 KOG0286 G-protein beta subunit 91.1 22 0.00048 37.3 25.9 209 415-644 78-295 (343)
103 PF03178 CPSF_A: CPSF A subuni 90.7 7.3 0.00016 41.6 15.4 136 446-592 42-189 (321)
104 KOG0316 Conserved WD40 repeat- 90.6 22 0.00047 36.3 17.3 177 414-613 81-260 (307)
105 cd00216 PQQ_DH Dehydrogenases 90.5 37 0.0008 38.7 26.5 70 399-475 111-191 (488)
106 KOG1332 Vesicle coat complex C 90.3 24 0.00051 36.3 19.5 52 608-666 241-296 (299)
107 cd00216 PQQ_DH Dehydrogenases 90.2 39 0.00084 38.5 23.3 120 438-570 54-192 (488)
108 PRK03629 tolB translocation pr 90.0 37 0.0008 38.0 24.3 205 392-612 203-408 (429)
109 cd00094 HX Hemopexin-like repe 89.8 21 0.00045 35.3 16.8 141 440-613 11-178 (194)
110 PRK10115 protease 2; Provision 88.9 59 0.0013 38.9 26.7 257 392-667 131-404 (686)
111 KOG1036 Mitotic spindle checkp 88.8 19 0.0004 38.0 15.6 132 461-613 35-166 (323)
112 PRK02889 tolB translocation pr 88.5 46 0.00099 37.1 25.4 225 414-659 176-404 (427)
113 PTZ00421 coronin; Provisional 88.3 53 0.0011 37.6 21.4 150 445-612 87-247 (493)
114 PF12217 End_beta_propel: Cata 87.6 38 0.00082 35.1 20.2 197 397-594 24-257 (367)
115 PRK02889 tolB translocation pr 86.4 60 0.0013 36.2 22.2 164 394-571 202-368 (427)
116 PRK04043 tolB translocation pr 86.1 63 0.0014 36.1 24.0 189 414-617 213-407 (419)
117 KOG1036 Mitotic spindle checkp 85.9 50 0.0011 34.9 17.7 152 388-565 14-165 (323)
118 PF02897 Peptidase_S9_N: Proly 85.2 63 0.0014 35.6 19.0 208 445-662 134-361 (414)
119 PF14870 PSII_BNR: Photosynthe 84.8 59 0.0013 34.7 21.7 212 398-641 71-294 (302)
120 PF08268 FBA_3: F-box associat 84.8 8.4 0.00018 35.3 9.9 81 536-617 2-87 (129)
121 COG1520 FOG: WD40-like repeat 84.7 65 0.0014 35.1 23.3 153 395-570 65-226 (370)
122 PRK11028 6-phosphogluconolacto 84.6 59 0.0013 34.5 24.4 216 391-630 83-326 (330)
123 PF09910 DUF2139: Uncharacteri 84.3 60 0.0013 34.4 18.5 124 507-639 77-219 (339)
124 PLN03215 ascorbic acid mannose 84.2 28 0.0006 38.2 14.8 96 470-574 189-305 (373)
125 COG1520 FOG: WD40-like repeat 83.9 70 0.0015 34.8 21.1 152 442-616 65-225 (370)
126 KOG0279 G protein beta subunit 82.7 66 0.0014 33.7 19.6 194 391-613 67-265 (315)
127 cd00094 HX Hemopexin-like repe 82.6 52 0.0011 32.4 16.6 137 398-566 16-178 (194)
128 KOG0299 U3 snoRNP-associated p 82.3 72 0.0016 35.5 16.8 218 389-640 204-443 (479)
129 PRK04043 tolB translocation pr 81.6 95 0.0021 34.7 23.0 149 461-619 213-366 (419)
130 PTZ00420 coronin; Provisional 81.4 1.2E+02 0.0025 35.5 24.5 152 446-617 138-300 (568)
131 PF14870 PSII_BNR: Photosynthe 80.9 83 0.0018 33.6 25.3 243 388-666 17-270 (302)
132 PF10282 Lactonase: Lactonase, 80.9 86 0.0019 33.8 27.1 246 403-669 3-289 (345)
133 KOG0649 WD40 repeat protein [G 80.8 60 0.0013 33.4 14.4 148 471-640 99-263 (325)
134 PRK01742 tolB translocation pr 80.7 1E+02 0.0022 34.4 22.1 181 393-596 209-392 (429)
135 PF08268 FBA_3: F-box associat 79.7 18 0.00039 33.0 10.1 80 584-664 3-87 (129)
136 PF13088 BNR_2: BNR repeat-lik 79.3 79 0.0017 32.4 18.3 215 422-638 28-275 (275)
137 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.2 38 0.00082 39.1 14.6 117 488-616 65-197 (527)
138 KOG0316 Conserved WD40 repeat- 79.0 67 0.0015 32.9 14.1 143 398-566 28-176 (307)
139 KOG0772 Uncharacterized conser 79.0 87 0.0019 35.5 16.1 235 392-657 172-444 (641)
140 PLN02919 haloacid dehalogenase 78.7 1.9E+02 0.0042 36.5 30.4 237 391-658 571-888 (1057)
141 PLN02919 haloacid dehalogenase 78.5 1.9E+02 0.0042 36.4 25.2 154 440-613 687-891 (1057)
142 KOG0291 WD40-repeat-containing 78.5 1.5E+02 0.0033 35.2 22.9 159 391-570 311-473 (893)
143 PRK01742 tolB translocation pr 78.3 1.2E+02 0.0026 33.8 23.4 206 414-643 184-392 (429)
144 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.9 47 0.001 38.4 14.8 119 439-569 63-197 (527)
145 PF06433 Me-amine-dh_H: Methyl 77.5 28 0.0006 37.6 11.7 117 399-522 3-132 (342)
146 smart00284 OLF Olfactomedin-li 76.6 1E+02 0.0022 32.1 18.5 185 398-593 34-242 (255)
147 KOG0315 G-protein beta subunit 75.6 1E+02 0.0023 31.8 20.8 224 390-643 43-279 (311)
148 KOG1332 Vesicle coat complex C 75.6 67 0.0015 33.1 13.1 102 447-572 176-296 (299)
149 KOG0266 WD40 repeat-containing 74.9 1.5E+02 0.0033 33.4 23.5 191 392-611 208-410 (456)
150 PF13088 BNR_2: BNR repeat-lik 74.4 1.1E+02 0.0023 31.4 18.7 185 492-678 58-266 (275)
151 PF14583 Pectate_lyase22: Olig 74.3 60 0.0013 35.8 13.4 233 396-644 44-304 (386)
152 PRK02268 hypothetical protein; 72.5 8 0.00017 36.4 5.5 99 36-145 20-135 (141)
153 KOG0289 mRNA splicing factor [ 72.4 92 0.002 34.5 14.0 130 485-634 350-486 (506)
154 KOG2321 WD40 repeat protein [G 71.4 91 0.002 35.8 14.1 109 445-570 145-265 (703)
155 PLN00033 photosystem II stabil 70.7 1.8E+02 0.0039 32.4 27.3 250 379-665 77-364 (398)
156 PLN00033 photosystem II stabil 70.2 1.8E+02 0.004 32.3 24.6 213 398-640 146-388 (398)
157 PF01878 EVE: EVE domain; Int 70.1 6 0.00013 37.1 4.2 97 48-145 36-143 (143)
158 KOG3545 Olfactomedin and relat 69.4 1.4E+02 0.0031 30.8 15.9 199 416-640 12-236 (249)
159 PF10282 Lactonase: Lactonase, 68.2 1.8E+02 0.0039 31.4 27.8 244 398-666 48-333 (345)
160 PLN03215 ascorbic acid mannose 67.9 1E+02 0.0022 33.9 13.6 96 517-621 189-305 (373)
161 PTZ00420 coronin; Provisional 66.7 2.6E+02 0.0056 32.7 24.3 105 494-611 139-249 (568)
162 KOG0649 WD40 repeat protein [G 66.6 1.6E+02 0.0036 30.4 14.9 140 386-546 113-263 (325)
163 KOG0296 Angio-associated migra 65.7 2.1E+02 0.0045 31.2 15.3 150 392-566 69-223 (399)
164 COG4257 Vgb Streptogramin lyas 65.5 1.9E+02 0.004 30.6 19.1 194 415-633 125-325 (353)
165 COG4946 Uncharacterized protei 65.3 2.4E+02 0.0052 31.8 18.8 138 415-571 288-439 (668)
166 TIGR02658 TTQ_MADH_Hv methylam 64.7 2.2E+02 0.0047 31.1 23.0 77 395-475 53-142 (352)
167 KOG0274 Cdc4 and related F-box 64.7 2.7E+02 0.0059 32.3 19.0 147 442-613 337-485 (537)
168 KOG0646 WD40 repeat protein [G 64.7 2.1E+02 0.0045 32.1 14.8 25 584-613 286-310 (476)
169 KOG0318 WD40 repeat stress pro 64.5 2.6E+02 0.0056 31.9 24.7 99 539-658 454-560 (603)
170 KOG0266 WD40 repeat-containing 64.4 2.5E+02 0.0054 31.7 23.9 183 445-658 214-409 (456)
171 COG4880 Secreted protein conta 63.8 1.3E+02 0.0028 33.5 13.0 203 438-666 379-599 (603)
172 KOG0285 Pleiotropic regulator 63.1 2.3E+02 0.005 30.8 17.5 108 391-519 155-268 (460)
173 smart00256 FBOX A Receptor for 60.7 9.6 0.00021 26.8 2.9 29 315-348 10-38 (41)
174 COG4257 Vgb Streptogramin lyas 59.4 2.4E+02 0.0052 29.8 19.0 220 414-664 83-312 (353)
175 PRK10115 protease 2; Provision 58.9 3.8E+02 0.0083 32.0 22.3 214 393-618 177-402 (686)
176 KOG0646 WD40 repeat protein [G 58.7 2.7E+02 0.0059 31.2 14.5 60 438-504 84-146 (476)
177 KOG0296 Angio-associated migra 57.8 2.8E+02 0.0062 30.2 16.0 142 445-613 75-223 (399)
178 KOG2048 WD40 repeat protein [G 57.6 3.8E+02 0.0082 31.5 24.7 226 413-668 46-288 (691)
179 KOG0305 Anaphase promoting com 56.7 2E+02 0.0044 32.8 13.7 61 492-564 228-289 (484)
180 KOG0272 U4/U6 small nuclear ri 56.5 3.2E+02 0.0069 30.4 17.7 112 537-668 312-427 (459)
181 KOG0281 Beta-TrCP (transducin 56.1 2E+02 0.0044 31.1 12.5 88 462-564 341-429 (499)
182 PF09910 DUF2139: Uncharacteri 52.7 3.2E+02 0.0069 29.2 15.6 138 413-564 77-231 (339)
183 KOG2321 WD40 repeat protein [G 51.1 94 0.002 35.7 9.7 104 493-613 146-261 (703)
184 PF06433 Me-amine-dh_H: Methyl 50.4 49 0.0011 35.8 7.2 118 446-570 3-133 (342)
185 KOG2048 WD40 repeat protein [G 49.1 5.1E+02 0.011 30.5 22.3 81 556-643 226-310 (691)
186 KOG0305 Anaphase promoting com 48.6 4.7E+02 0.01 29.9 19.7 206 415-644 240-453 (484)
187 KOG0289 mRNA splicing factor [ 48.0 4.4E+02 0.0095 29.5 18.5 131 438-587 350-486 (506)
188 KOG0278 Serine/threonine kinas 48.0 2.5E+02 0.0054 29.2 11.3 53 492-551 235-290 (334)
189 PHA02681 ORF089 virion membran 46.8 22 0.00048 29.9 3.1 34 127-160 45-78 (92)
190 KOG0265 U5 snRNP-specific prot 46.7 3.9E+02 0.0084 28.5 13.7 65 392-473 52-124 (338)
191 KOG0647 mRNA export protein (c 46.4 4E+02 0.0086 28.5 13.4 103 492-612 83-186 (347)
192 PF02239 Cytochrom_D1: Cytochr 42.8 4.9E+02 0.011 28.5 16.1 206 414-642 16-238 (369)
193 PF07433 DUF1513: Protein of u 42.6 4.5E+02 0.0099 28.1 17.8 197 479-680 1-224 (305)
194 PF12217 End_beta_propel: Cata 42.6 4.2E+02 0.0092 27.7 16.1 215 382-596 67-334 (367)
195 KOG4378 Nuclear protein COP1 [ 42.1 4.2E+02 0.0091 30.2 12.7 86 511-611 190-281 (673)
196 KOG0318 WD40 repeat stress pro 41.8 1.6E+02 0.0034 33.6 9.5 108 391-517 447-561 (603)
197 PF12937 F-box-like: F-box-lik 41.4 10 0.00022 28.1 0.3 29 315-348 13-41 (47)
198 KOG0315 G-protein beta subunit 40.7 4.4E+02 0.0096 27.4 20.0 184 399-611 10-198 (311)
199 KOG0286 G-protein beta subunit 40.2 4.9E+02 0.011 27.7 22.7 186 381-594 89-292 (343)
200 KOG0291 WD40-repeat-containing 39.3 7.6E+02 0.016 29.7 24.9 159 437-617 308-473 (893)
201 KOG0272 U4/U6 small nuclear ri 38.9 5.8E+02 0.013 28.4 13.0 160 388-573 262-426 (459)
202 PF14583 Pectate_lyase22: Olig 38.1 2.9E+02 0.0062 30.6 10.8 177 414-597 102-304 (386)
203 PHA02902 putative IMV membrane 37.9 34 0.00073 27.5 2.7 43 106-149 27-69 (70)
204 KOG1523 Actin-related protein 37.8 3.2E+02 0.0069 29.4 10.6 145 460-612 31-183 (361)
205 KOG0278 Serine/threonine kinas 37.6 4.4E+02 0.0096 27.5 11.2 123 461-598 165-290 (334)
206 TIGR03074 PQQ_membr_DH membran 37.4 7.1E+02 0.015 30.3 15.1 113 489-613 191-347 (764)
207 COG3823 Glutamine cyclotransfe 36.5 3E+02 0.0065 27.9 9.7 98 487-594 50-148 (262)
208 KOG1898 Splicing factor 3b, su 36.0 9.2E+02 0.02 30.3 15.1 167 457-634 849-1030(1205)
209 PF00646 F-box: F-box domain; 36.0 28 0.00061 25.5 2.0 30 315-349 15-44 (48)
210 KOG2111 Uncharacterized conser 35.8 5.8E+02 0.013 27.4 17.1 175 445-643 58-257 (346)
211 KOG0299 U3 snoRNP-associated p 35.5 6.9E+02 0.015 28.1 16.0 132 441-598 209-349 (479)
212 KOG0306 WD40-repeat-containing 35.1 8.3E+02 0.018 29.4 14.2 98 440-550 378-476 (888)
213 KOG0263 Transcription initiati 34.5 8.1E+02 0.018 29.2 14.2 103 445-564 545-650 (707)
214 PF08662 eIF2A: Eukaryotic tra 31.3 4.6E+02 0.01 25.7 10.5 71 539-620 71-141 (194)
215 PF09826 Beta_propel: Beta pro 31.1 8.8E+02 0.019 28.0 21.5 100 554-658 247-355 (521)
216 COG4946 Uncharacterized protei 31.0 8.4E+02 0.018 27.8 16.6 185 413-618 106-303 (668)
217 COG0823 TolB Periplasmic compo 30.4 5.9E+02 0.013 28.6 12.2 149 414-571 218-367 (425)
218 KOG1517 Guanine nucleotide bin 30.4 1.1E+03 0.025 29.6 14.7 201 426-657 1154-1380(1387)
219 KOG3545 Olfactomedin and relat 29.7 6.5E+02 0.014 26.1 12.3 183 398-593 30-236 (249)
220 PF07734 FBA_1: F-box associat 28.9 5E+02 0.011 24.5 14.6 81 489-571 2-91 (164)
221 COG0656 ARA1 Aldo/keto reducta 28.7 18 0.0004 38.0 -0.1 54 95-151 213-268 (280)
222 PRK01029 tolB translocation pr 28.6 8.6E+02 0.019 27.1 20.0 190 414-618 211-411 (428)
223 KOG0647 mRNA export protein (c 28.3 7.6E+02 0.017 26.4 14.5 27 445-477 84-110 (347)
224 COG0823 TolB Periplasmic compo 27.6 6.8E+02 0.015 28.1 12.0 148 461-618 218-367 (425)
225 KOG3881 Uncharacterized conser 27.1 8.8E+02 0.019 26.8 13.0 147 446-611 161-321 (412)
226 KOG0640 mRNA cleavage stimulat 26.7 5.4E+02 0.012 27.6 10.0 98 392-502 221-326 (430)
227 KOG0640 mRNA cleavage stimulat 25.5 8.7E+02 0.019 26.1 11.8 54 508-567 238-295 (430)
228 KOG1538 Uncharacterized conser 25.3 1.2E+03 0.026 27.7 16.2 49 398-455 24-74 (1081)
229 KOG3881 Uncharacterized conser 25.0 8.2E+02 0.018 27.0 11.3 148 398-565 160-322 (412)
230 KOG0274 Cdc4 and related F-box 24.8 1.1E+03 0.025 27.2 22.9 162 461-644 311-474 (537)
231 KOG1897 Damage-specific DNA bi 23.8 1.5E+03 0.032 28.3 17.8 169 457-641 746-931 (1096)
232 PF15525 DUF4652: Domain of un 22.1 7.9E+02 0.017 24.5 10.9 79 460-538 87-170 (200)
233 KOG0308 Conserved WD40 repeat- 20.9 1.4E+03 0.031 27.0 13.8 76 434-519 115-204 (735)
234 KOG0263 Transcription initiati 20.6 7.3E+02 0.016 29.6 10.6 99 536-645 542-642 (707)
235 KOG0308 Conserved WD40 repeat- 20.3 1.4E+03 0.03 27.1 12.4 67 396-472 127-204 (735)
No 1
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=100.00 E-value=5.3e-62 Score=437.04 Aligned_cols=129 Identities=56% Similarity=1.046 Sum_probs=127.6
Q ss_pred cceEEEeecCCChHHHhhhhcccCCCcCccchhccCCCCcEEEEecCCCeEeeEEEeccCCCccccCCCCC-CCCCCCCC
Q 005735 18 LGGVIFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYTDRKLHGIFEAASPGMMNINPYGWT-DGSERTSY 96 (680)
Q Consensus 18 ~~g~if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~~~~l~g~~~a~s~g~~~~~~~a~~-~~~~~~~~ 96 (680)
|||||||||++|++|||+++|||||+.++++|++||||||||||||++|+|||||||+|+|+|||+|+||+ +|+.+++|
T Consensus 1 lgG~IF~Cn~~T~~ECf~~~lFGLP~~~~~~V~~I~pG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~~f 80 (130)
T PF10539_consen 1 LGGFIFMCNNKTKPECFRRQLFGLPAGHKDFVKKIKPGMPLFLFNYSDRKLYGIFEATSDGGMNIEPYAFSGSGSGESPF 80 (130)
T ss_pred CceEEEEECCCCHHHHHhcccccCChhhhhHHheeCCCCEEEEEEcCCCEEEEEEEecCCCccCcChhhhCCCCCCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999 78899999
Q ss_pred CceEEEEEeeeecCCCCCcchhHHhhcccCCCCCCCCCCHHHHHHHHHhc
Q 005735 97 PAQVQIRVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALL 146 (680)
Q Consensus 97 paqv~~~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf 146 (680)
||||||+|+++|+||+|++||+||+||||.++||+||||++||++|++||
T Consensus 81 PAQVrf~i~~~C~PL~E~~fk~aI~~Ny~~~~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 81 PAQVRFRIRWDCPPLPESQFKPAIKDNYYDKNKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ceEEEEEEeeeeecCCHHHHHHHHHHhCCCCCcccCcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=100.00 E-value=5.8e-62 Score=433.87 Aligned_cols=132 Identities=48% Similarity=0.901 Sum_probs=127.5
Q ss_pred cccceEEEeecCCChHHHhhhhcccCCCcCccchhccCCCCcEEEEecCCCeEeeEEEeccCCCccccCCCCCCCCCCCC
Q 005735 16 SYLGGVIFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYTDRKLHGIFEAASPGMMNINPYGWTDGSERTS 95 (680)
Q Consensus 16 ~~~~g~if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~~~~l~g~~~a~s~g~~~~~~~a~~~~~~~~~ 95 (680)
++|||+|||||++|++|||+++|||||+.++++|++||||||||||||++|+|||||||+|+|+|||+|+||.+.+ .++
T Consensus 1 ~~lgG~IF~Cn~~T~~Ecf~~~lFGLP~~~~~~V~~IkpG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~-~s~ 79 (132)
T smart00767 1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK-ESR 79 (132)
T ss_pred CCcceEEEEeCCCCHHHHHhcccccCChhhhhhhheeCCCCEEEEEecCCceeeeEEEeccCCcCCcChhHhcCCC-CCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999322 689
Q ss_pred CCceEEEEEeeeecCCCCCcchhHHhhcccCCCCCCCCCCHHHHHHHHHhccc
Q 005735 96 YPAQVQIRVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSS 148 (680)
Q Consensus 96 ~paqv~~~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~ 148 (680)
|||||||+|+|+|+||+|++||+||++|||.++||+||||++||++|++||+|
T Consensus 80 fPaQVrf~i~~~C~PL~E~~f~~aI~~nY~~~~kF~~eLs~~Qv~~L~~LF~~ 132 (132)
T smart00767 80 FPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP 132 (132)
T ss_pred cCcEEEEEEeeeecCCCHHHHHHHHHHhCcCCccccccCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.5e-44 Score=405.66 Aligned_cols=283 Identities=35% Similarity=0.642 Sum_probs=267.8
Q ss_pred cCCCEEEEEecCCC-CcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCC-CCCccceEEEEeCCCCcE
Q 005735 396 DPSESIYLVGGCDG-DSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGD-GNSWHNTVESYSPANDEW 473 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~-~~~~~~~v~vyD~~t~~W 473 (680)
...+.||++||..+ ......+..||+.++.|..+++||.+|..+++++++++||++||.+ +...++++|+||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 34788999999986 6788999999999999999999999999999999999999999999 788899999999999999
Q ss_pred EECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCC-
Q 005735 474 TSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNE- 552 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~- 552 (680)
..+++|+.+|..+++++++|+||++||.++...++++|+||+.+++|..+++|+..|.++++++++|+||++||.++..
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE
Q 005735 553 YMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV 632 (680)
Q Consensus 553 ~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~ 632 (680)
.++++++|||.+++|+.+++|+.+|..+++++++++||++||+++.....+|+.||+.+++|..+++|+.+|..++++++
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~ 521 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL 521 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE
Confidence 89999999999999999999999999999999999999999999877778899999999999999999999999999999
Q ss_pred CCEEEEEecccCCCcccceEEEEcCC-CCeEecccCCCCCcceeEEEEC
Q 005735 633 KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 680 (680)
Q Consensus 633 ~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~~ 680 (680)
++++|++||.++ ...+++|++|+|. ++|+..++ +...|+.++++++
T Consensus 522 ~~~ly~vGG~~~-~~~l~~ve~ydp~~d~W~~~~~-~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 522 GGKLYAVGGFDG-NNNLNTVECYDPETDTWTEVTE-PESGRGGAGVAVI 568 (571)
T ss_pred CCEEEEEecccC-ccccceeEEcCCCCCceeeCCC-ccccccCcceEEe
Confidence 999999999665 4789999999999 99999999 6556888887763
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=370.22 Aligned_cols=264 Identities=16% Similarity=0.216 Sum_probs=233.9
Q ss_pred EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCC-CCCccceEEEEeCCCCcEEECCC
Q 005735 400 SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGD-GNSWHNTVESYSPANDEWTSRPS 478 (680)
Q Consensus 400 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~-~~~~~~~v~vyD~~t~~W~~l~~ 478 (680)
.|++.||.. ......++.||+.+++|..+++||.+|.++++++++++|||+||.. +....+++++||+.+++|..+++
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP 337 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence 355555521 1223568999999999999999999999999999999999999976 44557899999999999999999
Q ss_pred CCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCC-------
Q 005735 479 LNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGN------- 551 (680)
Q Consensus 479 lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~------- 551 (680)
||.+|..+++++++|+||++||.++...++++++||+.+++|..+++||.+|..+++++++|+||++||.++.
T Consensus 338 m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 338 MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccc
Confidence 9999999999999999999999877767889999999999999999999999999999999999999997642
Q ss_pred -----------CcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCC-CCCeEEEEeCCC-CcEEEcC
Q 005735 552 -----------EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSA-MVPSIEVYDPRL-GSWMSGE 618 (680)
Q Consensus 552 -----------~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~-~~~~v~~yD~~t-~~W~~v~ 618 (680)
..++.+++|||.+++|+.+++|+.+|..+++++++++||++||.++.. ....+++|||.+ ++|+.++
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 135789999999999999999999999999999999999999986543 334689999999 8999999
Q ss_pred CCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC-CCeEecccCC
Q 005735 619 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRA 668 (680)
Q Consensus 619 ~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p 668 (680)
+||.+|..+++++++++||++||.++. .++++||+. ++|+.+.+.-
T Consensus 498 ~m~~~r~~~~~~~~~~~iyv~Gg~~~~----~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 498 TTESRLSALHTILHDNTIMMLHCYESY----MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ccCcccccceeEEECCEEEEEeeecce----eehhhcCcccccccchhhhc
Confidence 999999999999999999999998763 479999999 9999887643
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4e-38 Score=358.37 Aligned_cols=255 Identities=34% Similarity=0.615 Sum_probs=240.9
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecCC-CCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCC
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGCD-GDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDG 456 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~ 456 (680)
.|..+..++.++.....+..++.||++||.+ +...++++++||+.+++|..+++|+.+|..+++++++|.||++||.++
T Consensus 312 ~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg 391 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDG 391 (571)
T ss_pred cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccc
Confidence 3888888888888877777799999999999 788999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCc-ccceEEEEeCCCccEEEcccccccccceEE
Q 005735 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLE-CFSDVEMLDLDIGKWIRTRSMLQKRFALAA 535 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~-~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~ 535 (680)
...++++++|||.+++|...++|+.+|.++++++++|+||++||.++.. +++++++|||.+++|+.+++|+.+|.++++
T Consensus 392 ~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~ 471 (571)
T KOG4441|consen 392 EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV 471 (571)
T ss_pred ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceE
Confidence 9999999999999999999999999999999999999999999988777 899999999999999999999999999999
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
++++++||++||+++...+..+++|||.+++|+.+++|+.+|..+++++++++||++||+++....+++..||+.+++|+
T Consensus 472 a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 99999999999999877788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCccceEEEEE
Q 005735 616 SGEPMKLSRGYLGAAVV 632 (680)
Q Consensus 616 ~v~~lp~~R~~~s~v~~ 632 (680)
....+...|...+++++
T Consensus 552 ~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 552 EVTEPESGRGGAGVAVI 568 (571)
T ss_pred eCCCccccccCcceEEe
Confidence 99886666776666654
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9e-37 Score=329.30 Aligned_cols=273 Identities=19% Similarity=0.235 Sum_probs=224.9
Q ss_pred hcccccceEEEcCCCEEEEEecCCC--CcccCeEEEEeCCCCeEEEcCCCC-CCc---cceEEEEECCEEEEEecCCCCC
Q 005735 385 KLLESSDELHLDPSESIYLVGGCDG--DSWLSTLELYLPSCDVIKTLKPMS-SAR---SYASAAMLNGELYIFGGGDGNS 458 (680)
Q Consensus 385 ~p~~~~~~~~v~~~~~Iyv~GG~~~--~~~~~~v~~yd~~t~~W~~l~~mp-~~R---~~~s~v~~~~~IyV~GG~~~~~ 458 (680)
.|.++..+..+..++.|||+||... ....+++++||+.+++|..++++. .+| ..|++++++++||||||.....
T Consensus 19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~ 98 (341)
T PLN02153 19 GPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR 98 (341)
T ss_pred CCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC
Confidence 5667777777777999999999853 334578999999999999998764 343 3788999999999999988766
Q ss_pred ccceEEEEeCCCCcEEECCCC-----CCCCcccEEEEECCEEEEEccCCCC------cccceEEEEeCCCccEEEccccc
Q 005735 459 WHNTVESYSPANDEWTSRPSL-----NGTKGSLAGATIDNKIFAIGGGNGL------ECFSDVEMLDLDIGKWIRTRSML 527 (680)
Q Consensus 459 ~~~~v~vyD~~t~~W~~l~~l-----p~~r~~~a~~v~~gkIyV~GG~~~~------~~~~~ve~yD~~t~~W~~i~~~p 527 (680)
.++++++||+.+++|+.+++| |.+|..|++++++++|||+||.+.. ..++++++||+.+++|..++++.
T Consensus 99 ~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 99 EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 778999999999999999887 7889999999999999999997532 13578999999999999998664
Q ss_pred ---ccccceEEEEECCEEEEEcCCCCC--------CcCceeEEEeCCCCcEEEecc---CCCCCceeEEEEECCEEEEEe
Q 005735 528 ---QKRFALAAAELNGVLYATGGYDGN--------EYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAVLNGKLYALG 593 (680)
Q Consensus 528 ---~~r~~~s~~~~~g~Lyv~GG~~~~--------~~~~~v~~yD~~t~~W~~v~~---~p~~r~~~s~v~~~~~IyviG 593 (680)
.+|..+++++++++||++||.+.. ...+++++||+.+++|+.++. +|.+|..|++++++++|||+|
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~G 258 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFG 258 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEEC
Confidence 789999999999999999986421 225789999999999999964 688999999999999999999
Q ss_pred ccC---------CCCCCCeEEEEeCCCCcEEEcC-----CCCCCccceEEEE-EC-CEEEEEecccCCCcccceEEEEcC
Q 005735 594 GFD---------GSAMVPSIEVYDPRLGSWMSGE-----PMKLSRGYLGAAV-VK-EAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 594 G~~---------~~~~~~~v~~yD~~t~~W~~v~-----~lp~~R~~~s~v~-~~-~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
|.. .....+++++||+.+++|+.+. ++|.+|..++++. .+ ++|||+||...+...+++++.|+.
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEec
Confidence 963 1234568999999999999986 3444444334443 34 589999999887788899999975
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.7e-35 Score=319.92 Aligned_cols=269 Identities=17% Similarity=0.210 Sum_probs=217.3
Q ss_pred hhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeC--CCCeEEEcCCCC-CCccceEEEEECCEEEEEecCCCC---
Q 005735 384 EKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLP--SCDVIKTLKPMS-SARSYASAAMLNGELYIFGGGDGN--- 457 (680)
Q Consensus 384 ~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~--~t~~W~~l~~mp-~~R~~~s~v~~~~~IyV~GG~~~~--- 457 (680)
.+|.++...+.+..++.|||+||... +.+++||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC
Confidence 34545544445445899999999743 56899996 678999999999 589999999999999999998632
Q ss_pred ---CccceEEEEeCCCCcEEECC-CCCCCCcccEEE-EECCEEEEEccCCCCc---------------------------
Q 005735 458 ---SWHNTVESYSPANDEWTSRP-SLNGTKGSLAGA-TIDNKIFAIGGGNGLE--------------------------- 505 (680)
Q Consensus 458 ---~~~~~v~vyD~~t~~W~~l~-~lp~~r~~~a~~-v~~gkIyV~GG~~~~~--------------------------- 505 (680)
..++++|+||+.+++|+.++ ++|.+|..++++ +++++||++||.+...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 24688999999999999997 456667777666 6899999999975321
Q ss_pred -------ccceEEEEeCCCccEEEcccccc-cccceEEEEECCEEEEEcCCCCCCc-CceeEEEe--CCCCcEEEeccCC
Q 005735 506 -------CFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATGGYDGNEY-MNSAERFD--PREHYWTKIANMN 574 (680)
Q Consensus 506 -------~~~~ve~yD~~t~~W~~i~~~p~-~r~~~s~~~~~g~Lyv~GG~~~~~~-~~~v~~yD--~~t~~W~~v~~~p 574 (680)
.++.+++||+.+++|+.+++||. +|..++++.++++||++||...... ...++.|| +.+++|+.+++||
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 13789999999999999999996 6889999999999999999764332 23455555 5677999999998
Q ss_pred CCC-------ceeEEEEECCEEEEEeccCCCC-----------------CCCeEEEEeCCCCcEEEcCCCCCCccceEEE
Q 005735 575 RRR-------GCHSLAVLNGKLYALGGFDGSA-----------------MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAA 630 (680)
Q Consensus 575 ~~r-------~~~s~v~~~~~IyviGG~~~~~-----------------~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v 630 (680)
.+| ..+.+++++++||++||.+... ....+++||+++++|+.+++||.+|..++++
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~ 318 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSV 318 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEE
Confidence 765 2455678899999999975210 1236899999999999999999999999988
Q ss_pred EECCEEEEEecccCCCcccceEEEEc
Q 005735 631 VVKEAIYVIGGVKNGSEIVDTVERFK 656 (680)
Q Consensus 631 ~~~~~lyV~GG~~~~~~~~~~ve~y~ 656 (680)
+++++|||+||....+..+++|+.|.
T Consensus 319 ~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 319 SWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 99999999999988778888888763
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3e-35 Score=330.00 Aligned_cols=272 Identities=15% Similarity=0.262 Sum_probs=230.7
Q ss_pred hcccccceEEEcCCCEEEEEecCCC--CcccCeEEEEeCCCCeEEEcCCC---CC-CccceEEEEECCEEEEEecCCCCC
Q 005735 385 KLLESSDELHLDPSESIYLVGGCDG--DSWLSTLELYLPSCDVIKTLKPM---SS-ARSYASAAMLNGELYIFGGGDGNS 458 (680)
Q Consensus 385 ~p~~~~~~~~v~~~~~Iyv~GG~~~--~~~~~~v~~yd~~t~~W~~l~~m---p~-~R~~~s~v~~~~~IyV~GG~~~~~ 458 (680)
.|.++..+..+..++.||++||... ....+++++||+.+++|..++++ |. .|..|++++++++|||+||.....
T Consensus 162 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~ 241 (470)
T PLN02193 162 GPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR 241 (470)
T ss_pred CCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC
Confidence 4667777777778999999999752 23446899999999999988653 33 357889999999999999998777
Q ss_pred ccceEEEEeCCCCcEEECCCC---CCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEccc---ccccccc
Q 005735 459 WHNTVESYSPANDEWTSRPSL---NGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS---MLQKRFA 532 (680)
Q Consensus 459 ~~~~v~vyD~~t~~W~~l~~l---p~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~---~p~~r~~ 532 (680)
.++++++||+.+++|++++++ |.+|..|++++++++|||+||.+....++++++||+.+++|+.+++ ++.+|..
T Consensus 242 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 242 QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 789999999999999999887 7899999999999999999999877778899999999999998864 6778999
Q ss_pred eEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC---CCCCceeEEEEECCEEEEEeccCC---------CCC
Q 005735 533 LAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM---NRRRGCHSLAVLNGKLYALGGFDG---------SAM 600 (680)
Q Consensus 533 ~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~---p~~r~~~s~v~~~~~IyviGG~~~---------~~~ 600 (680)
+++++++++||++||.++.. .+++++||+.+++|+.++.+ |.+|..|+++.++++|||+||... ...
T Consensus 322 ~~~~~~~gkiyviGG~~g~~-~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFNGCE-VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred cEEEEECCcEEEEECCCCCc-cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccce
Confidence 99999999999999987643 68899999999999999754 889999999999999999999753 124
Q ss_pred CCeEEEEeCCCCcEEEcCCC------CCCccceEEE--EE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 601 VPSIEVYDPRLGSWMSGEPM------KLSRGYLGAA--VV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 601 ~~~v~~yD~~t~~W~~v~~l------p~~R~~~s~v--~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.+++++||+.+++|+.+..+ |.+|..++++ .+ ++.|++|||....+..++++|+|+.
T Consensus 401 ~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~ 467 (470)
T PLN02193 401 TDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGI 467 (470)
T ss_pred eccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEec
Confidence 56899999999999998643 5677776543 33 3459999999987788999999865
No 9
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.6e-35 Score=326.70 Aligned_cols=278 Identities=19% Similarity=0.331 Sum_probs=233.0
Q ss_pred CCCEEEEEecCCCCcccCeEEE--EeCCC----CeEEEcCC---CCCCccceEEEEECCEEEEEecCCC--CCccceEEE
Q 005735 397 PSESIYLVGGCDGDSWLSTLEL--YLPSC----DVIKTLKP---MSSARSYASAAMLNGELYIFGGGDG--NSWHNTVES 465 (680)
Q Consensus 397 ~~~~Iyv~GG~~~~~~~~~v~~--yd~~t----~~W~~l~~---mp~~R~~~s~v~~~~~IyV~GG~~~--~~~~~~v~v 465 (680)
.+++|+.|+|..+.. +..+-. +++.+ ++|..+.+ +|.+|..|++++++++|||+||... ....+++|+
T Consensus 119 ~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~ 197 (470)
T PLN02193 119 QGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYV 197 (470)
T ss_pred cCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEE
Confidence 389999999976433 444444 47655 79999875 6889999999999999999999752 234468999
Q ss_pred EeCCCCcEEECCCC---CC-CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccc---cccccceEEEEE
Q 005735 466 YSPANDEWTSRPSL---NG-TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM---LQKRFALAAAEL 538 (680)
Q Consensus 466 yD~~t~~W~~l~~l---p~-~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~---p~~r~~~s~~~~ 538 (680)
||+.+++|+.++.+ |. +|..+++++++++|||+||.+....++++++||+.+++|+.++++ |.+|..|+++.+
T Consensus 198 yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~ 277 (470)
T PLN02193 198 FDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD 277 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE
Confidence 99999999988653 33 356788899999999999988777789999999999999999887 789999999999
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc---CCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~---~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
+++||++||.+....++++++||+.+++|+.++. +|.+|..|++++++++||++||.++. ..+++++||+.+++|+
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEE
Confidence 9999999999877778899999999999999864 67889999999999999999998754 3688999999999999
Q ss_pred EcCCC---CCCccceEEEEECCEEEEEecccC--------CCcccceEEEEcCC-CCeEecccCC-----CCCcceeE
Q 005735 616 SGEPM---KLSRGYLGAAVVKEAIYVIGGVKN--------GSEIVDTVERFKEG-QGWEEINSRA-----IGKRCFMS 676 (680)
Q Consensus 616 ~v~~l---p~~R~~~s~v~~~~~lyV~GG~~~--------~~~~~~~ve~y~~~-~~W~~v~~~p-----~~~r~~~s 676 (680)
.++.+ |.+|..+++++++++||||||... .+...+++++||+. ++|+.++.++ ...|.+++
T Consensus 357 ~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~ 434 (470)
T PLN02193 357 QVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTA 434 (470)
T ss_pred EeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcccc
Confidence 98754 889999999999999999999753 12356789999999 9999987653 22466664
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.3e-36 Score=340.25 Aligned_cols=241 Identities=15% Similarity=0.214 Sum_probs=215.1
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecCC-CCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCC
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGCD-GDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDG 456 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~ 456 (680)
.|..+..+|.++..+..+..++.||++||.+ +....+++++|||.+++|..+++|+.+|..+++++++++||++||.++
T Consensus 283 ~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~ 362 (557)
T PHA02713 283 EYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNG 362 (557)
T ss_pred eEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCC
Confidence 4777778887776666666799999999985 445678899999999999999999999999999999999999999987
Q ss_pred CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCc------------------ccceEEEEeCCCc
Q 005735 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLE------------------CFSDVEMLDLDIG 518 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~------------------~~~~ve~yD~~t~ 518 (680)
....+++++|||.+++|+.+++||.+|..+++++++|+||++||.++.. ..+.+++|||.++
T Consensus 363 ~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td 442 (557)
T PHA02713 363 TNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN 442 (557)
T ss_pred CCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC
Confidence 6677899999999999999999999999999999999999999975321 2578999999999
Q ss_pred cEEEcccccccccceEEEEECCEEEEEcCCCCCC-cCceeEEEeCCC-CcEEEeccCCCCCceeEEEEECCEEEEEeccC
Q 005735 519 KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNE-YMNSAERFDPRE-HYWTKIANMNRRRGCHSLAVLNGKLYALGGFD 596 (680)
Q Consensus 519 ~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~-~~~~v~~yD~~t-~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~ 596 (680)
+|+.+++|+.+|..+++++++|+||++||.++.. ..+.+++|||.+ ++|+.+++||.+|..+++++++|+||++||++
T Consensus 443 ~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~ 522 (557)
T PHA02713 443 IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYE 522 (557)
T ss_pred eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeec
Confidence 9999999999999999999999999999987543 335689999999 89999999999999999999999999999988
Q ss_pred CCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 597 GSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 597 ~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
+. .++++||+.+++|+.+++..
T Consensus 523 ~~---~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 523 SY---MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ce---eehhhcCcccccccchhhhc
Confidence 63 47899999999999987643
No 11
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1e-34 Score=313.37 Aligned_cols=245 Identities=19% Similarity=0.338 Sum_probs=207.9
Q ss_pred CCCCeEEEcCC----CCCCccceEEEEECCEEEEEecCCC--CCccceEEEEeCCCCcEEECCCCC-CCC---cccEEEE
Q 005735 421 PSCDVIKTLKP----MSSARSYASAAMLNGELYIFGGGDG--NSWHNTVESYSPANDEWTSRPSLN-GTK---GSLAGAT 490 (680)
Q Consensus 421 ~~t~~W~~l~~----mp~~R~~~s~v~~~~~IyV~GG~~~--~~~~~~v~vyD~~t~~W~~l~~lp-~~r---~~~a~~v 490 (680)
+....|..+.. +|.+|..|++++++++|||+||... ....+++++||+.+++|+.+++++ .+| ..+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999975 7899999999999999999999853 334578999999999999988764 333 3688899
Q ss_pred ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccc-----cccccceEEEEECCEEEEEcCCCCCC------cCceeEE
Q 005735 491 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM-----LQKRFALAAAELNGVLYATGGYDGNE------YMNSAER 559 (680)
Q Consensus 491 ~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~-----p~~r~~~s~~~~~g~Lyv~GG~~~~~------~~~~v~~ 559 (680)
++++||++||.+....++++++||+.+++|+.+++| |.+|..|++++++++|||+||.+... .++++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999987766788999999999999999877 78899999999999999999986431 3568999
Q ss_pred EeCCCCcEEEeccCC---CCCceeEEEEECCEEEEEeccCCC--------CCCCeEEEEeCCCCcEEEcCC---CCCCcc
Q 005735 560 FDPREHYWTKIANMN---RRRGCHSLAVLNGKLYALGGFDGS--------AMVPSIEVYDPRLGSWMSGEP---MKLSRG 625 (680)
Q Consensus 560 yD~~t~~W~~v~~~p---~~r~~~s~v~~~~~IyviGG~~~~--------~~~~~v~~yD~~t~~W~~v~~---lp~~R~ 625 (680)
||+.+++|+.++.+. .+|..|++++++++||++||.+.. ...+++++||+.+++|..++. +|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998664 788999999999999999986421 225789999999999999864 688999
Q ss_pred ceEEEEECCEEEEEecccC--------CCcccceEEEEcCC-CCeEecc
Q 005735 626 YLGAAVVKEAIYVIGGVKN--------GSEIVDTVERFKEG-QGWEEIN 665 (680)
Q Consensus 626 ~~s~v~~~~~lyV~GG~~~--------~~~~~~~ve~y~~~-~~W~~v~ 665 (680)
.+++++++++||||||... .+...+++++||+. ++|+.++
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 9999999999999999742 23456789999998 9999886
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.4e-34 Score=309.90 Aligned_cols=259 Identities=15% Similarity=0.247 Sum_probs=213.7
Q ss_pred eEEEcCCCEEEEEecCCCC----------cccCeEEEEe-CCCC-eEEEcCCCCCCccceEEEEECCEEEEEecCCCCCc
Q 005735 392 ELHLDPSESIYLVGGCDGD----------SWLSTLELYL-PSCD-VIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSW 459 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~----------~~~~~v~~yd-~~t~-~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~ 459 (680)
+.+...++.||++||.+.. ...+++++|+ +..+ +|..+++||.+|.++++++++++||++||..+...
T Consensus 7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~ 86 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER 86 (323)
T ss_pred EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCC
Confidence 3334448999999998632 2345788885 4333 79999999999999999999999999999987777
Q ss_pred cceEEEEeCCCCcE----EECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEccccc-ccccceE
Q 005735 460 HNTVESYSPANDEW----TSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML-QKRFALA 534 (680)
Q Consensus 460 ~~~v~vyD~~t~~W----~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p-~~r~~~s 534 (680)
++++++||+.+++| +.+++||.+|..+++++++++|||+||.......+++++||+.+++|+.+++|| .+|..++
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~ 166 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPV 166 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence 88999999999988 788999999999999999999999999865556789999999999999999987 4788888
Q ss_pred EEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC---CC--CceeE-EEEECCEEEEEeccCCCC---------
Q 005735 535 AAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN---RR--RGCHS-LAVLNGKLYALGGFDGSA--------- 599 (680)
Q Consensus 535 ~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p---~~--r~~~s-~v~~~~~IyviGG~~~~~--------- 599 (680)
+++++++||++||.++.. ..++++||+.+++|+.+++|+ .+ +..++ ++..+++||++||.+...
T Consensus 167 ~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 245 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLA 245 (323)
T ss_pred EEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhh
Confidence 899999999999987543 356899999999999998763 23 23333 344479999999986421
Q ss_pred -----------------------CCCeEEEEeCCCCcEEEcCCCC-CCccceEEEEECCEEEEEecccCCCcccce
Q 005735 600 -----------------------MVPSIEVYDPRLGSWMSGEPMK-LSRGYLGAAVVKEAIYVIGGVKNGSEIVDT 651 (680)
Q Consensus 600 -----------------------~~~~v~~yD~~t~~W~~v~~lp-~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ 651 (680)
..+++++||+.+++|+.++++| .+|..++++.++++||++||....+..+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~ 321 (323)
T TIGR03548 246 TMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPGVRTPD 321 (323)
T ss_pred hccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCCcCCcC
Confidence 2367999999999999999887 589999999999999999998766544443
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.9e-34 Score=313.67 Aligned_cols=281 Identities=17% Similarity=0.221 Sum_probs=225.2
Q ss_pred hhhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCC--CCeEEEcCCCC-CCccceEEEEECCEEEEEecCC
Q 005735 379 KECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPS--CDVIKTLKPMS-SARSYASAAMLNGELYIFGGGD 455 (680)
Q Consensus 379 ~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~--t~~W~~l~~mp-~~R~~~s~v~~~~~IyV~GG~~ 455 (680)
+..++.+|.++.....+..++.|||+||... +.+++||+. ++.|..+++|| .+|..+++++++++|||+||..
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~ 94 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIG 94 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCC
Confidence 4555666766554455556999999999743 358899986 47899999998 5899999999999999999986
Q ss_pred C------CCccceEEEEeCCCCcEEECCC-CCCCCcccEEEE-ECCEEEEEccCCCC-----------------------
Q 005735 456 G------NSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGAT-IDNKIFAIGGGNGL----------------------- 504 (680)
Q Consensus 456 ~------~~~~~~v~vyD~~t~~W~~l~~-lp~~r~~~a~~v-~~gkIyV~GG~~~~----------------------- 504 (680)
. ...++++|+||+.+++|+.+++ +|.++..|++++ .+++||++||....
T Consensus 95 ~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~ 174 (376)
T PRK14131 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKIN 174 (376)
T ss_pred CCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhH
Confidence 4 1346789999999999999986 466777777776 79999999997531
Q ss_pred -----------cccceEEEEeCCCccEEEcccccc-cccceEEEEECCEEEEEcCCCCCC-cCceeE--EEeCCCCcEEE
Q 005735 505 -----------ECFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATGGYDGNE-YMNSAE--RFDPREHYWTK 569 (680)
Q Consensus 505 -----------~~~~~ve~yD~~t~~W~~i~~~p~-~r~~~s~~~~~g~Lyv~GG~~~~~-~~~~v~--~yD~~t~~W~~ 569 (680)
...+++++||+.+++|+.++++|. +|..++++.++++||++||..... ....++ .||+.+++|..
T Consensus 175 ~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 254 (376)
T PRK14131 175 DAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK 254 (376)
T ss_pred HHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceee
Confidence 024689999999999999999996 788889999999999999964332 223344 56778999999
Q ss_pred eccCCCCCce--------eEEEEECCEEEEEeccCCCC-----------------CCCeEEEEeCCCCcEEEcCCCCCCc
Q 005735 570 IANMNRRRGC--------HSLAVLNGKLYALGGFDGSA-----------------MVPSIEVYDPRLGSWMSGEPMKLSR 624 (680)
Q Consensus 570 v~~~p~~r~~--------~s~v~~~~~IyviGG~~~~~-----------------~~~~v~~yD~~t~~W~~v~~lp~~R 624 (680)
+++||.+|.. +.+++++++||++||.+... ....+++||+++++|+.++.||.+|
T Consensus 255 ~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r 334 (376)
T PRK14131 255 LPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL 334 (376)
T ss_pred cCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc
Confidence 9999877632 23567899999999975211 0124689999999999999999999
Q ss_pred cceEEEEECCEEEEEecccCCCcccceEEEEcCC-CCeEe
Q 005735 625 GYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEE 663 (680)
Q Consensus 625 ~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~ 663 (680)
.++++++++++|||+||...++..+++|++|++. ++|..
T Consensus 335 ~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 335 AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 9999999999999999988777889999999987 56654
No 14
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=328.90 Aligned_cols=267 Identities=20% Similarity=0.356 Sum_probs=231.9
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCC-CCccceEEEEeCCCCcEEECC
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~-~~~~~~v~vyD~~t~~W~~l~ 477 (680)
..+++.||.. .....+..|++.+++|..+++++. +..++++++++.|||+||... ....+++++||+.+++|..++
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC
Confidence 4455556543 233456678888999999877664 445788899999999999874 345678999999999999999
Q ss_pred CCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCC-CCcCce
Q 005735 478 SLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDG-NEYMNS 556 (680)
Q Consensus 478 ~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~-~~~~~~ 556 (680)
+|+.+|..+++++++++||++||.+.....+++++||+.+++|+.+++||.+|..++++.++++||++||... ...++.
T Consensus 328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 328 ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccce
Confidence 9999999999999999999999988666788999999999999999999999999999999999999999643 345788
Q ss_pred eEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCC---CCCeEEEEeCCCCcEEEcCCCCCCccceEEEEEC
Q 005735 557 AERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSA---MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVK 633 (680)
Q Consensus 557 v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~---~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~ 633 (680)
+++||+.+++|+.++++|.+|..++++.++++||++||.+... ....+++||+.+++|..+++++.+|..+++++++
T Consensus 408 v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 487 (534)
T PHA03098 408 VECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFN 487 (534)
T ss_pred EEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEEC
Confidence 9999999999999999999999999999999999999976432 2567999999999999999999999999999999
Q ss_pred CEEEEEecccCCCcccceEEEEcCC-CCeEecccCCC
Q 005735 634 EAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAI 669 (680)
Q Consensus 634 ~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p~ 669 (680)
++|||+||.... ...+++++||+. ++|..++.+|.
T Consensus 488 ~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 488 NKIYVVGGDKYE-YYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CEEEEEcCCcCC-cccceeEEEeCCCCEEEecCCCcc
Confidence 999999998764 346789999999 99999988775
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2e-32 Score=295.95 Aligned_cols=247 Identities=17% Similarity=0.270 Sum_probs=201.8
Q ss_pred cCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeC--CCCcEEECCCCC-CCCcccEEEEECCEEEEEccCCCC-
Q 005735 429 LKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSP--ANDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGGNGL- 504 (680)
Q Consensus 429 l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~--~t~~W~~l~~lp-~~r~~~a~~v~~gkIyV~GG~~~~- 504 (680)
+++||.+|..+++++++++|||+||... +.+++||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence 4789999999888899999999999743 57899996 678999999999 589999999999999999997532
Q ss_pred -----cccceEEEEeCCCccEEEcc-cccccccceEEE-EECCEEEEEcCCCCCC-------------------------
Q 005735 505 -----ECFSDVEMLDLDIGKWIRTR-SMLQKRFALAAA-ELNGVLYATGGYDGNE------------------------- 552 (680)
Q Consensus 505 -----~~~~~ve~yD~~t~~W~~i~-~~p~~r~~~s~~-~~~g~Lyv~GG~~~~~------------------------- 552 (680)
..++++++||+.+++|+.++ ++|..|.+++++ +++++||++||.+...
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 24688999999999999997 567777777766 7899999999986421
Q ss_pred ---------cCceeEEEeCCCCcEEEeccCCC-CCceeEEEEECCEEEEEeccCCCC-CCCeEEEEe--CCCCcEEEcCC
Q 005735 553 ---------YMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGSA-MVPSIEVYD--PRLGSWMSGEP 619 (680)
Q Consensus 553 ---------~~~~v~~yD~~t~~W~~v~~~p~-~r~~~s~v~~~~~IyviGG~~~~~-~~~~v~~yD--~~t~~W~~v~~ 619 (680)
.++.+++||+.+++|+.+++||. +|..++++.++++||++||..... ....++.|| +++++|..+++
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 24789999999999999999996 688888899999999999975432 224466665 56779999999
Q ss_pred CCCCc-------cceEEEEECCEEEEEecccCCC----------------cccceEEEEcCC-CCeEecccCCCCCccee
Q 005735 620 MKLSR-------GYLGAAVVKEAIYVIGGVKNGS----------------EIVDTVERFKEG-QGWEEINSRAIGKRCFM 675 (680)
Q Consensus 620 lp~~R-------~~~s~v~~~~~lyV~GG~~~~~----------------~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~ 675 (680)
||.+| ..+++++++++|||+||....+ ..+..+++|++. ++|+.+++||.. |..+
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~-~~~~ 315 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG-LAYG 315 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC-ceee
Confidence 98875 2455778899999999976321 123478999998 999999999996 7777
Q ss_pred EEEEC
Q 005735 676 SVVTV 680 (680)
Q Consensus 676 sa~~~ 680 (680)
+++++
T Consensus 316 ~~~~~ 320 (346)
T TIGR03547 316 VSVSW 320 (346)
T ss_pred EEEEc
Confidence 77653
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=313.43 Aligned_cols=233 Identities=24% Similarity=0.413 Sum_probs=208.3
Q ss_pred EEEcCCCEEEEEecCCCC-cccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 393 LHLDPSESIYLVGGCDGD-SWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~-~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
.++..++.||++||..+. ...++++.||+.+++|..+++|+.+|..|++++++++|||+||..+....+++++||+.++
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 445558999999998643 3557899999999999999999999999999999999999999987677889999999999
Q ss_pred cEEECCCCCCCCcccEEEEECCEEEEEccCCC-CcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCC
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNG-LECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDG 550 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~-~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~ 550 (680)
+|+..++||.+|..+++++++++||++||... ...++++++||+.+++|+.++++|.+|..++++.++++||++||.+.
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 99999999999999999999999999999643 33578899999999999999999999999999999999999999764
Q ss_pred CC---cCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCcc
Q 005735 551 NE---YMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG 625 (680)
Q Consensus 551 ~~---~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~ 625 (680)
.. ..+.+++||+.+++|+.++.++.+|..++++.++++||++||.++....+++++||+.+++|..++.+|....
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccccc
Confidence 32 2567999999999999999999999999999999999999998876667899999999999999988765433
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=307.42 Aligned_cols=224 Identities=21% Similarity=0.365 Sum_probs=197.6
Q ss_pred CCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEcc
Q 005735 421 PSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGG 500 (680)
Q Consensus 421 ~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG 500 (680)
+.+++|.... ....++..++.||++||..+....++++.||+.+++|..+++|+.+|..+++++++|+||++||
T Consensus 253 ~~~~~~~~~~------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG 326 (480)
T PHA02790 253 MNMDQIIDIF------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGG 326 (480)
T ss_pred Ccccceeecc------CCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECC
Confidence 4455666532 1222455899999999987666778899999999999999999999999999999999999999
Q ss_pred CCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCcee
Q 005735 501 GNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCH 580 (680)
Q Consensus 501 ~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~ 580 (680)
.++. +.++.||+.+++|..+++||.+|..+++++++|+||++||.++. .+.+++|||.+++|+.+++|+.+|..+
T Consensus 327 ~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~ 401 (480)
T PHA02790 327 LPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKS 401 (480)
T ss_pred cCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccc
Confidence 7532 56899999999999999999999999999999999999998643 367899999999999999999999999
Q ss_pred EEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC-C
Q 005735 581 SLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-Q 659 (680)
Q Consensus 581 s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-~ 659 (680)
++++++++||++||. +++||+++++|+.+++|+.+|..+++++++++||++||.+.. ..++++|+|||. +
T Consensus 402 ~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 402 CALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRTY 472 (480)
T ss_pred eEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECCCC
Confidence 999999999999983 578999999999999999999999999999999999998754 356889999999 9
Q ss_pred CeEec
Q 005735 660 GWEEI 664 (680)
Q Consensus 660 ~W~~v 664 (680)
+|+..
T Consensus 473 ~W~~~ 477 (480)
T PHA02790 473 SWNIW 477 (480)
T ss_pred eEEec
Confidence 99764
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=306.67 Aligned_cols=209 Identities=27% Similarity=0.397 Sum_probs=191.8
Q ss_pred CCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 397 PSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 397 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
.++.||++||.++....+.++.|||.+++|..+++|+.+|..+++++++++||++||..+. +++++||+.+++|..+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeEEEC
Confidence 4889999999877677788999999999999999999999999999999999999997532 5699999999999999
Q ss_pred CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCce
Q 005735 477 PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNS 556 (680)
Q Consensus 477 ~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~ 556 (680)
++||.+|..+++++++|+||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||.
T Consensus 347 ~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-------- 416 (480)
T PHA02790 347 PSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-------- 416 (480)
T ss_pred CCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------
Confidence 9999999999999999999999997543 367999999999999999999999999999999999999983
Q ss_pred eEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 557 AERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 557 v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
+++||+.+++|+.+++|+.+|..+++++++|+||++||.++....+.+++||+.+++|+...
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 57899999999999999999999999999999999999876555688999999999998653
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=9.1e-32 Score=288.18 Aligned_cols=246 Identities=19% Similarity=0.230 Sum_probs=203.2
Q ss_pred CCccceEEEEECCEEEEEecCCCC----------CccceEEEEe-CC-CCcEEECCCCCCCCcccEEEEECCEEEEEccC
Q 005735 434 SARSYASAAMLNGELYIFGGGDGN----------SWHNTVESYS-PA-NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGG 501 (680)
Q Consensus 434 ~~R~~~s~v~~~~~IyV~GG~~~~----------~~~~~v~vyD-~~-t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~ 501 (680)
..++.+.++++++.|||+||.+.. ..++++++|+ +. +.+|..+++||.+|..+++++++++||++||.
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~ 81 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS 81 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence 346778889999999999998642 2456888886 33 23799999999999999999999999999998
Q ss_pred CCCcccceEEEEeCCCccE----EEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC-CC
Q 005735 502 NGLECFSDVEMLDLDIGKW----IRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-RR 576 (680)
Q Consensus 502 ~~~~~~~~ve~yD~~t~~W----~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p-~~ 576 (680)
++...++++++||+.+++| ..+++||.+|..+++++++++||++||.......+++++||+.+++|+.++++| .+
T Consensus 82 ~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 82 NSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred CCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence 8777788999999999988 678999999999999999999999999865566789999999999999999988 47
Q ss_pred CceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC---CCc--cceE-EEEECCEEEEEecccCCC----
Q 005735 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK---LSR--GYLG-AAVVKEAIYVIGGVKNGS---- 646 (680)
Q Consensus 577 r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp---~~R--~~~s-~v~~~~~lyV~GG~~~~~---- 646 (680)
|..+++++++++||++||.++.. ..++++||+++++|+.+++++ .|+ ..++ +++.+++|||+||.+...
T Consensus 162 r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 88888889999999999986543 356899999999999998763 233 3333 344479999999986421
Q ss_pred ---------------------------cccceEEEEcCC-CCeEecccCCCCCcceeEEEEC
Q 005735 647 ---------------------------EIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 680 (680)
Q Consensus 647 ---------------------------~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~~ 680 (680)
...+++++||+. ++|+.++++|...|+.++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 302 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLT 302 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEE
Confidence 013679999999 9999999888656888877763
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=262.58 Aligned_cols=258 Identities=19% Similarity=0.364 Sum_probs=221.2
Q ss_pred ccccceEEEcCCCEEEEEecCC-C----CcccCeEEEEeCCCCeEEEcCC-------------CCCCccceEEEEECCEE
Q 005735 387 LESSDELHLDPSESIYLVGGCD-G----DSWLSTLELYLPSCDVIKTLKP-------------MSSARSYASAAMLNGEL 448 (680)
Q Consensus 387 ~~~~~~~~v~~~~~Iyv~GG~~-~----~~~~~~v~~yd~~t~~W~~l~~-------------mp~~R~~~s~v~~~~~I 448 (680)
+++-.++++..+.+||.|||+- + ....-++.++|..+-+|..+++ .|..|++|+++.+++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 3566777888899999999973 2 2223579999999999998865 34569999999999999
Q ss_pred EEEecCCC-CCccceEEEEeCCCCcEEEC---CCCCCCCcccEEEEECCEEEEEccCC--CCcccceEEEEeCCCccEEE
Q 005735 449 YIFGGGDG-NSWHNTVESYSPANDEWTSR---PSLNGTKGSLAGATIDNKIFAIGGGN--GLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 449 yV~GG~~~-~~~~~~v~vyD~~t~~W~~l---~~lp~~r~~~a~~v~~gkIyV~GG~~--~~~~~~~ve~yD~~t~~W~~ 522 (680)
||.||.++ ....+.++.||+.++.|.+. .-+|.+|-+|++|++++.+|+|||+. .+...++++++|..|.+|+.
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 99999985 55678899999999999765 45799999999999999999999984 44567899999999999998
Q ss_pred cc---cccccccceEEEEECCEEEEEcCCCCC---------CcCceeEEEeCCCCcEEEec---cCCCCCceeEEEEECC
Q 005735 523 TR---SMLQKRFALAAAELNGVLYATGGYDGN---------EYMNSAERFDPREHYWTKIA---NMNRRRGCHSLAVLNG 587 (680)
Q Consensus 523 i~---~~p~~r~~~s~~~~~g~Lyv~GG~~~~---------~~~~~v~~yD~~t~~W~~v~---~~p~~r~~~s~v~~~~ 587 (680)
+. ..|.-|..|+++++++.+|+|||.... .+.+.+..+|..++.|.+-+ ..|..|..|++.++++
T Consensus 172 ~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng 251 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNG 251 (392)
T ss_pred hhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcc
Confidence 74 566678899999999999999996432 46678899999999999985 4578999999999999
Q ss_pred EEEEEeccCCC--CCCCeEEEEeCCCCcEEEcC---CCCCCccceEEEEECCEEEEEecccC
Q 005735 588 KLYALGGFDGS--AMVPSIEVYDPRLGSWMSGE---PMKLSRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 588 ~IyviGG~~~~--~~~~~v~~yD~~t~~W~~v~---~lp~~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
+||++||+++. .-.+++|.|||.+..|+.+. .-|.+|+.+++++.++++|+|||...
T Consensus 252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999999875 45689999999999999984 57889999999999999999999875
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=2.3e-30 Score=283.04 Aligned_cols=251 Identities=18% Similarity=0.254 Sum_probs=202.1
Q ss_pred eEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCC--CCcEEECCCCC-CCCcccEEEEECCEEEEEccC
Q 005735 425 VIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA--NDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGG 501 (680)
Q Consensus 425 ~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~--t~~W~~l~~lp-~~r~~~a~~v~~gkIyV~GG~ 501 (680)
.++.+++||.++..+++++++++|||+||... +.+++||+. +++|..++++| .+|..+++++++++|||+||.
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCC
Confidence 46788999999988889999999999999753 358899986 47899999998 589999999999999999997
Q ss_pred CC------CcccceEEEEeCCCccEEEccc-ccccccceEEEE-ECCEEEEEcCCCCC----------------------
Q 005735 502 NG------LECFSDVEMLDLDIGKWIRTRS-MLQKRFALAAAE-LNGVLYATGGYDGN---------------------- 551 (680)
Q Consensus 502 ~~------~~~~~~ve~yD~~t~~W~~i~~-~p~~r~~~s~~~-~~g~Lyv~GG~~~~---------------------- 551 (680)
.. ...++++++||+.+++|..+++ +|.++.++++++ .+++||++||.+..
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 54 1246789999999999999985 467777777776 89999999997532
Q ss_pred ------------CcCceeEEEeCCCCcEEEeccCCC-CCceeEEEEECCEEEEEeccCCC-CCCCeEE--EEeCCCCcEE
Q 005735 552 ------------EYMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGS-AMVPSIE--VYDPRLGSWM 615 (680)
Q Consensus 552 ------------~~~~~v~~yD~~t~~W~~v~~~p~-~r~~~s~v~~~~~IyviGG~~~~-~~~~~v~--~yD~~t~~W~ 615 (680)
...+.+++||+.+++|+.++++|. +|..++++.++++||++||.... .....++ .||+++++|.
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee
Confidence 124789999999999999999996 67788888899999999996432 2223344 4577899999
Q ss_pred EcCCCCCCccc--------eEEEEECCEEEEEecccCCCc----------------ccceEEEEcCC-CCeEecccCCCC
Q 005735 616 SGEPMKLSRGY--------LGAAVVKEAIYVIGGVKNGSE----------------IVDTVERFKEG-QGWEEINSRAIG 670 (680)
Q Consensus 616 ~v~~lp~~R~~--------~s~v~~~~~lyV~GG~~~~~~----------------~~~~ve~y~~~-~~W~~v~~~p~~ 670 (680)
.+++||.+|.. +.+++++++|||+||....+. .+..+++|++. ++|+.+++||..
T Consensus 254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 333 (376)
T PRK14131 254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG 333 (376)
T ss_pred ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC
Confidence 99999887642 235678999999999763211 12357899999 999999999996
Q ss_pred CcceeEEEEC
Q 005735 671 KRCFMSVVTV 680 (680)
Q Consensus 671 ~r~~~sa~~~ 680 (680)
|.+++++++
T Consensus 334 -r~~~~av~~ 342 (376)
T PRK14131 334 -LAYGVSVSW 342 (376)
T ss_pred -ccceEEEEe
Confidence 788877653
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.96 E-value=9.1e-28 Score=236.61 Aligned_cols=254 Identities=19% Similarity=0.289 Sum_probs=208.7
Q ss_pred eEEEcCCCCCCccceEEEEECCEEEEEecCCCC-----CccceEEEEeCCCCcEEECCC-------------CCCCCccc
Q 005735 425 VIKTLKPMSSARSYASAAMLNGELYIFGGGDGN-----SWHNTVESYSPANDEWTSRPS-------------LNGTKGSL 486 (680)
Q Consensus 425 ~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~-----~~~~~v~vyD~~t~~W~~l~~-------------lp~~r~~~ 486 (680)
+|..--.--..|.+|+++.++..||-|||+... .-.-+|.++|..+-+|+++++ .|..|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 344332333558999999999999999998632 223579999999999999876 35669999
Q ss_pred EEEEECCEEEEEccCCCC-cccceEEEEeCCCccEEEc---ccccccccceEEEEECCEEEEEcCCCCC--CcCceeEEE
Q 005735 487 AGATIDNKIFAIGGGNGL-ECFSDVEMLDLDIGKWIRT---RSMLQKRFALAAAELNGVLYATGGYDGN--EYMNSAERF 560 (680)
Q Consensus 487 a~~v~~gkIyV~GG~~~~-~~~~~ve~yD~~t~~W~~i---~~~p~~r~~~s~~~~~g~Lyv~GG~~~~--~~~~~v~~y 560 (680)
+.+.+++++|+.||.+.. ..-+.++.||+++.+|... +-+|..|.+|+++++++.+|+|||+... .+.++++++
T Consensus 83 tvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred eEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 999999999999998764 3457899999999999765 4689999999999999999999998754 678899999
Q ss_pred eCCCCcEEEec---cCCCCCceeEEEEECCEEEEEeccCCC---------CCCCeEEEEeCCCCcEEEcC---CCCCCcc
Q 005735 561 DPREHYWTKIA---NMNRRRGCHSLAVLNGKLYALGGFDGS---------AMVPSIEVYDPRLGSWMSGE---PMKLSRG 625 (680)
Q Consensus 561 D~~t~~W~~v~---~~p~~r~~~s~v~~~~~IyviGG~~~~---------~~~~~v~~yD~~t~~W~~v~---~lp~~R~ 625 (680)
|..+.+|+.+. ..|.-|-.|+++++++.+||+||..+. .+.+++..+|++++.|..-+ -.|.+|+
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999994 445667789999999999999996433 34567999999999999875 3567899
Q ss_pred ceEEEEECCEEEEEecccCC-CcccceEEEEcCC-CCeEecccC---CCCCcceeEEEE
Q 005735 626 YLGAAVVKEAIYVIGGVKNG-SEIVDTVERFKEG-QGWEEINSR---AIGKRCFMSVVT 679 (680)
Q Consensus 626 ~~s~v~~~~~lyV~GG~~~~-~~~~~~ve~y~~~-~~W~~v~~~---p~~~r~~~sa~~ 679 (680)
.|++-++++++|+|||+.+- +.--+++|+|+|. ..|+.+... |. .|.++|++|
T Consensus 243 SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~-aRRRqC~~v 300 (392)
T KOG4693|consen 243 SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPS-ARRRQCSVV 300 (392)
T ss_pred ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCC-cccceeEEE
Confidence 99999999999999999764 3355789999999 899987653 34 477777776
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=256.87 Aligned_cols=287 Identities=20% Similarity=0.289 Sum_probs=236.0
Q ss_pred hhhcccccceEEEcCCCEEEEEecCCCCcccCe--EEEEeCCCCeEEEcC---CCCCCccceEEEEECCEEEEEecCCC-
Q 005735 383 YEKLLESSDELHLDPSESIYLVGGCDGDSWLST--LELYLPSCDVIKTLK---PMSSARSYASAAMLNGELYIFGGGDG- 456 (680)
Q Consensus 383 ~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~--v~~yd~~t~~W~~l~---~mp~~R~~~s~v~~~~~IyV~GG~~~- 456 (680)
...|.++..+.++..++.+|++||......... ++++|..+..|.... ..|.+|++|+++.++++||+|||...
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 446677888888888999999999875544444 999999999998774 56789999999999999999999984
Q ss_pred CCccceEEEEeCCCCcEEECC---CCCCCCcccEEEEECCEEEEEccCCCCc-ccceEEEEeCCCccEEEc---cccccc
Q 005735 457 NSWHNTVESYSPANDEWTSRP---SLNGTKGSLAGATIDNKIFAIGGGNGLE-CFSDVEMLDLDIGKWIRT---RSMLQK 529 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~---~lp~~r~~~a~~v~~gkIyV~GG~~~~~-~~~~ve~yD~~t~~W~~i---~~~p~~ 529 (680)
....++++.||+.|++|..+. .+|.+|.+|+++++++++|||||.+... ..+++++||+++.+|..+ ++.|.+
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 566789999999999998874 4688999999999999999999987666 899999999999999987 467889
Q ss_pred ccceEEEEECCEEEEEcCCC-CCCcCceeEEEeCCCCcEEEec---cCCCCCceeEEEEECCEEEEEeccCCC-C-CCCe
Q 005735 530 RFALAAAELNGVLYATGGYD-GNEYMNSAERFDPREHYWTKIA---NMNRRRGCHSLAVLNGKLYALGGFDGS-A-MVPS 603 (680)
Q Consensus 530 r~~~s~~~~~g~Lyv~GG~~-~~~~~~~v~~yD~~t~~W~~v~---~~p~~r~~~s~v~~~~~IyviGG~~~~-~-~~~~ 603 (680)
|.+|++++++++++++||.+ +..++++++.+|+.+.+|..+. .+|.+|..|+.+..+..++++||.... . ...+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~ 294 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD 294 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence 99999999999999999988 6789999999999999999774 678999999999999999999997764 2 5788
Q ss_pred EEEEeCCCCcEEEcCC----CCCCccceEEEEEC----CEEEEEecccCCCcccceEEEEcCC-----CCeEecccCCC
Q 005735 604 IEVYDPRLGSWMSGEP----MKLSRGYLGAAVVK----EAIYVIGGVKNGSEIVDTVERFKEG-----QGWEEINSRAI 669 (680)
Q Consensus 604 v~~yD~~t~~W~~v~~----lp~~R~~~s~v~~~----~~lyV~GG~~~~~~~~~~ve~y~~~-----~~W~~v~~~p~ 669 (680)
++.||..+..|..+.. .|.+|..++++... ....++||....+...+++...... +.|..++.+..
T Consensus 295 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (482)
T KOG0379|consen 295 LYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNEVQEPGTRAV 373 (482)
T ss_pred cccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCCcccccccccc
Confidence 9999999999999754 35677777777663 3355555544444455555544332 56666654433
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=4.6e-26 Score=255.62 Aligned_cols=239 Identities=18% Similarity=0.313 Sum_probs=210.7
Q ss_pred CCCCCCccceEEEEECCEEEEEecCCCCCccce--EEEEeCCCCcEEECC---CCCCCCcccEEEEECCEEEEEccCCC-
Q 005735 430 KPMSSARSYASAAMLNGELYIFGGGDGNSWHNT--VESYSPANDEWTSRP---SLNGTKGSLAGATIDNKIFAIGGGNG- 503 (680)
Q Consensus 430 ~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~--v~vyD~~t~~W~~l~---~lp~~r~~~a~~v~~gkIyV~GG~~~- 503 (680)
...|.+|..|+++.+++++|||||......... ++++|..+..|.... ..|.+|.+|++++++++||+|||.+.
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 457888999999999999999999886555444 999999999998763 46788999999999999999999874
Q ss_pred CcccceEEEEeCCCccEEEcc---cccccccceEEEEECCEEEEEcCCCCCC-cCceeEEEeCCCCcEEEec---cCCCC
Q 005735 504 LECFSDVEMLDLDIGKWIRTR---SMLQKRFALAAAELNGVLYATGGYDGNE-YMNSAERFDPREHYWTKIA---NMNRR 576 (680)
Q Consensus 504 ~~~~~~ve~yD~~t~~W~~i~---~~p~~r~~~s~~~~~g~Lyv~GG~~~~~-~~~~v~~yD~~t~~W~~v~---~~p~~ 576 (680)
...+++++.||+.+.+|..+. .+|.+|.+|+++++++++||+||.+... ..+++|+||+.+.+|.++. ..|.+
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 556889999999999998874 5788999999999999999999998775 8999999999999999994 66889
Q ss_pred CceeEEEEECCEEEEEeccC-CCCCCCeEEEEeCCCCcEEEcC---CCCCCccceEEEEECCEEEEEecccCCCc-ccce
Q 005735 577 RGCHSLAVLNGKLYALGGFD-GSAMVPSIEVYDPRLGSWMSGE---PMKLSRGYLGAAVVKEAIYVIGGVKNGSE-IVDT 651 (680)
Q Consensus 577 r~~~s~v~~~~~IyviGG~~-~~~~~~~v~~yD~~t~~W~~v~---~lp~~R~~~s~v~~~~~lyV~GG~~~~~~-~~~~ 651 (680)
|..|++++++++++++||.+ +....++++++|+.+..|..+. ..|.+|.+|.++..+.+++++||...... .+.+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~ 294 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD 294 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence 99999999999999999988 6788999999999999999754 67899999999999999999999887544 6888
Q ss_pred EEEEcCC-CCeEecccCC
Q 005735 652 VERFKEG-QGWEEINSRA 668 (680)
Q Consensus 652 ve~y~~~-~~W~~v~~~p 668 (680)
++.|+.. ..|..+....
T Consensus 295 ~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 295 LYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccceeeeeccc
Confidence 9999987 8898876555
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.91 E-value=7.6e-24 Score=219.92 Aligned_cols=235 Identities=23% Similarity=0.360 Sum_probs=195.5
Q ss_pred CCCCCCccceEEEEE--CCEEEEEecCC--C--CCccceEEEEeCCCCcEEEC--CCCCCCCcccEEEEEC-CEEEEEcc
Q 005735 430 KPMSSARSYASAAML--NGELYIFGGGD--G--NSWHNTVESYSPANDEWTSR--PSLNGTKGSLAGATID-NKIFAIGG 500 (680)
Q Consensus 430 ~~mp~~R~~~s~v~~--~~~IyV~GG~~--~--~~~~~~v~vyD~~t~~W~~l--~~lp~~r~~~a~~v~~-gkIyV~GG 500 (680)
-+.|++|.++++++- .+.|++|||.- + ...++++|+||..+++|+++ |+-|.||++|.++++. |.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 457889999988776 46899999964 2 34579999999999999987 5678899999998885 89999999
Q ss_pred CCC------CcccceEEEEeCCCccEEEcc--cccccccceEEEEECCEEEEEcCCCCC----CcCceeEEEeCCCCcEE
Q 005735 501 GNG------LECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHYWT 568 (680)
Q Consensus 501 ~~~------~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~~g~Lyv~GG~~~~----~~~~~v~~yD~~t~~W~ 568 (680)
... ...+.++|+||+.+.+|+.+. .-|.+|++|.+++...+|++|||+-.. .|.+++|+||+++-+|.
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 522 125789999999999999884 578899999999999999999997432 68899999999999999
Q ss_pred Eec---cCCCCCceeEEEEE-CCEEEEEeccCCC---------CCCCeEEEEeCCC-----CcEEEcC---CCCCCccce
Q 005735 569 KIA---NMNRRRGCHSLAVL-NGKLYALGGFDGS---------AMVPSIEVYDPRL-----GSWMSGE---PMKLSRGYL 627 (680)
Q Consensus 569 ~v~---~~p~~r~~~s~v~~-~~~IyviGG~~~~---------~~~~~v~~yD~~t-----~~W~~v~---~lp~~R~~~ 627 (680)
.+. ..|.+|.++.+++. .|.||++||+... ....++|.+++++ ..|..+. --|.||.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 994 35899999999888 9999999998522 4567899999988 5777764 457899999
Q ss_pred EEEEE-CCEEEEEecccC--------CCcccceEEEEcCC-CCeEec
Q 005735 628 GAAVV-KEAIYVIGGVKN--------GSEIVDTVERFKEG-QGWEEI 664 (680)
Q Consensus 628 s~v~~-~~~lyV~GG~~~--------~~~~~~~ve~y~~~-~~W~~v 664 (680)
++++. +++-|+|||+.+ .+...++++.|+.. ++|...
T Consensus 301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 99988 569999999875 23477889999988 999764
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=4.3e-23 Score=214.39 Aligned_cols=220 Identities=20% Similarity=0.308 Sum_probs=184.2
Q ss_pred CCEEEEEecC--CCC--cccCeEEEEeCCCCeEEEc--CCCCCCccceEEEEE-CCEEEEEecCCC------CCccceEE
Q 005735 398 SESIYLVGGC--DGD--SWLSTLELYLPSCDVIKTL--KPMSSARSYASAAML-NGELYIFGGGDG------NSWHNTVE 464 (680)
Q Consensus 398 ~~~Iyv~GG~--~~~--~~~~~v~~yd~~t~~W~~l--~~mp~~R~~~s~v~~-~~~IyV~GG~~~------~~~~~~v~ 464 (680)
.+.+++|||. ++. ...+++|.||..+++|+.+ +..|.+|+.|++|++ .+.+|+|||... ...+.++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 6689999995 333 3468999999999999998 467889999999888 489999999652 34578999
Q ss_pred EEeCCCCcEEECC--CCCCCCcccEEEEECCEEEEEccCCC----CcccceEEEEeCCCccEEEccc---ccccccceEE
Q 005735 465 SYSPANDEWTSRP--SLNGTKGSLAGATIDNKIFAIGGGNG----LECFSDVEMLDLDIGKWIRTRS---MLQKRFALAA 535 (680)
Q Consensus 465 vyD~~t~~W~~l~--~lp~~r~~~a~~v~~gkIyV~GG~~~----~~~~~~ve~yD~~t~~W~~i~~---~p~~r~~~s~ 535 (680)
.||..+++|+++. .-|.+|++|-+++...+|++|||+.. ..+++++++||+++-+|..+.+ -|.+|+++++
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~ 237 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF 237 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE
Confidence 9999999999884 46889999999999999999999732 2368999999999999999853 4789999999
Q ss_pred EEE-CCEEEEEcCCCCC---------CcCceeEEEeCCC-----CcEEEecc---CCCCCceeEEEEE-CCEEEEEeccC
Q 005735 536 AEL-NGVLYATGGYDGN---------EYMNSAERFDPRE-----HYWTKIAN---MNRRRGCHSLAVL-NGKLYALGGFD 596 (680)
Q Consensus 536 ~~~-~g~Lyv~GG~~~~---------~~~~~v~~yD~~t-----~~W~~v~~---~p~~r~~~s~v~~-~~~IyviGG~~ 596 (680)
.+. +|.|||.||+... ...+++|.+++.. -.|..+.+ -|.+|..+++++. +++-+.|||..
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 998 9999999998532 4567899999988 57888854 4799999999887 66999999965
Q ss_pred C---------CCCCCeEEEEeCCCCcEEEc
Q 005735 597 G---------SAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 597 ~---------~~~~~~v~~yD~~t~~W~~v 617 (680)
+ ....++++.||+..++|...
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHh
Confidence 4 14678999999999999753
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=9.9e-23 Score=215.42 Aligned_cols=253 Identities=18% Similarity=0.292 Sum_probs=198.8
Q ss_pred eEEEc----CCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEE---CCCCCCCCcccEEEEECCEEEE
Q 005735 425 VIKTL----KPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTS---RPSLNGTKGSLAGATIDNKIFA 497 (680)
Q Consensus 425 ~W~~l----~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~---l~~lp~~r~~~a~~v~~gkIyV 497 (680)
.|+.+ .+.|.+|++|.++++..-|.||||.+. ...+.+.+||..+++|-. ..++|.+...|+.+..+.+||+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 68877 478899999999999999999999773 345778999999999964 4678888888999999999999
Q ss_pred EccC-CCCcccceEEEEeCCCccEEEc-------ccccccccceEEEEECCEEEEEcCCCCC---------CcCceeEEE
Q 005735 498 IGGG-NGLECFSDVEMLDLDIGKWIRT-------RSMLQKRFALAAAELNGVLYATGGYDGN---------EYMNSAERF 560 (680)
Q Consensus 498 ~GG~-~~~~~~~~ve~yD~~t~~W~~i-------~~~p~~r~~~s~~~~~g~Lyv~GG~~~~---------~~~~~v~~y 560 (680)
|||- ....+.++++.+--..-.|..+ +++|.+|.+|+...++++-|+|||...+ .|++++|++
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 9995 3334556644443334445555 2567899999999999999999996432 589999999
Q ss_pred eCCCCc----EEEe---ccCCCCCceeEEEEE------CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC---CCCCCc
Q 005735 561 DPREHY----WTKI---ANMNRRRGCHSLAVL------NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE---PMKLSR 624 (680)
Q Consensus 561 D~~t~~----W~~v---~~~p~~r~~~s~v~~------~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~---~lp~~R 624 (680)
+++-+. |... +.+|.+|..|+++.+ ..++|++||.++. .++++|.+|+++.+|.... ..|.||
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPR 255 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPR 255 (830)
T ss_pred EeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCc
Confidence 988553 7655 578999999999988 2479999998765 4689999999999999863 567899
Q ss_pred cceEEEEECCEEEEEecccCC-------------CcccceEEEEcCC-CCeEeccc-------CCCCCcceeEEEEC
Q 005735 625 GYLGAAVVKEAIYVIGGVKNG-------------SEIVDTVERFKEG-QGWEEINS-------RAIGKRCFMSVVTV 680 (680)
Q Consensus 625 ~~~s~v~~~~~lyV~GG~~~~-------------~~~~~~ve~y~~~-~~W~~v~~-------~p~~~r~~~sa~~~ 680 (680)
+-|+++++++++|||||.-.- -..++++-+++.. +.|..+-. .|- .|..|||+++
T Consensus 256 SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR-~RAGHCAvAi 331 (830)
T KOG4152|consen 256 SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPR-ARAGHCAVAI 331 (830)
T ss_pred ccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccc-ccccceeEEe
Confidence 999999999999999997421 1144556677776 88987532 344 4889999875
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.6e-22 Score=213.94 Aligned_cols=260 Identities=16% Similarity=0.221 Sum_probs=211.6
Q ss_pred hhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEc---CCCCCCccceEEEEECCEEEEEecCC-CCC
Q 005735 383 YEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTL---KPMSSARSYASAAMLNGELYIFGGGD-GNS 458 (680)
Q Consensus 383 ~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l---~~mp~~R~~~s~v~~~~~IyV~GG~~-~~~ 458 (680)
...|.++++|..+.....|.+|||-+ ....+.+++||..+++|..- ...|.+...|..+..+.+||+|||.. .+.
T Consensus 27 GPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk 105 (830)
T KOG4152|consen 27 GPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK 105 (830)
T ss_pred CCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc
Confidence 44677889999999999999999964 45668899999999999753 57888888999999999999999976 355
Q ss_pred ccceEEEEeCCCCcEEECC-------CCCCCCcccEEEEECCEEEEEccCCC---------CcccceEEEEeCCCc----
Q 005735 459 WHNTVESYSPANDEWTSRP-------SLNGTKGSLAGATIDNKIFAIGGGNG---------LECFSDVEMLDLDIG---- 518 (680)
Q Consensus 459 ~~~~v~vyD~~t~~W~~l~-------~lp~~r~~~a~~v~~gkIyV~GG~~~---------~~~~~~ve~yD~~t~---- 518 (680)
+.+++|-+-...-.|+++. .+|-+|-+|+...+++|.|+|||... -.++++++++++..+
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv 185 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVV 185 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceE
Confidence 6666554444444566663 35678999999999999999999521 136889999988855
Q ss_pred cEEEc---ccccccccceEEEEE------CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec---cCCCCCceeEEEEEC
Q 005735 519 KWIRT---RSMLQKRFALAAAEL------NGVLYATGGYDGNEYMNSAERFDPREHYWTKIA---NMNRRRGCHSLAVLN 586 (680)
Q Consensus 519 ~W~~i---~~~p~~r~~~s~~~~------~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~---~~p~~r~~~s~v~~~ 586 (680)
.|... +.+|.+|..|.++.+ ..++|++||.++. .+.++|.+|+++.+|.+.. -.|.+|..|+++.++
T Consensus 186 ~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IG 264 (830)
T KOG4152|consen 186 AWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIG 264 (830)
T ss_pred EEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCcccccceeec
Confidence 48754 578999999999988 3479999999874 4679999999999999873 567899999999999
Q ss_pred CEEEEEeccC-----CC---------CCCCeEEEEeCCCCcEEEcC-------CCCCCccceEEEEECCEEEEEecccC
Q 005735 587 GKLYALGGFD-----GS---------AMVPSIEVYDPRLGSWMSGE-------PMKLSRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 587 ~~IyviGG~~-----~~---------~~~~~v~~yD~~t~~W~~v~-------~lp~~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
+++||+||+- +. ...+++-++|+++..|..+- ..|.+|.+|+++.+++++|+..|.++
T Consensus 265 nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 265 NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred ceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 9999999952 11 34567889999999999862 47889999999999999999999874
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=6.7e-16 Score=159.56 Aligned_cols=271 Identities=17% Similarity=0.225 Sum_probs=201.9
Q ss_pred hhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCC--CeEEEcCCCC-CCccceEEEEECCEEEEEecCCC
Q 005735 380 ECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSC--DVIKTLKPMS-SARSYASAAMLNGELYIFGGGDG 456 (680)
Q Consensus 380 ~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t--~~W~~l~~mp-~~R~~~s~v~~~~~IyV~GG~~~ 456 (680)
..++++|...-+.+....++.+||.=|..+ ...+..|... ..|+.+...| .+|....+++++++||||||...
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 345666766666666666888888766433 3367777655 4799998877 56999999999999999999863
Q ss_pred -----CCccceEEEEeCCCCcEEECCC-CCCCCcccEEEEECC-EEEEEccCCCC-------------------------
Q 005735 457 -----NSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGATIDN-KIFAIGGGNGL------------------------- 504 (680)
Q Consensus 457 -----~~~~~~v~vyD~~t~~W~~l~~-lp~~r~~~a~~v~~g-kIyV~GG~~~~------------------------- 504 (680)
....+++|+|||.+++|+++.. .|.....++++.+++ +||++||.+..
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 3447899999999999999865 345567778888877 89999995210
Q ss_pred ---------cccceEEEEeCCCccEEEcccccc-cccceEEEEECCEEEEEcCCCCCCc-CceeEEEeCC--CCcEEEec
Q 005735 505 ---------ECFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATGGYDGNEY-MNSAERFDPR--EHYWTKIA 571 (680)
Q Consensus 505 ---------~~~~~ve~yD~~t~~W~~i~~~p~-~r~~~s~~~~~g~Lyv~GG~~~~~~-~~~v~~yD~~--t~~W~~v~ 571 (680)
.....+..|||.++.|+.+...|- ++++.+.+.-++++.++-|.-.... ...+.+++.. ..+|..++
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 123468899999999999986664 5666555555787999888654322 2345566554 56899999
Q ss_pred cCCCCCcee-------EEEEECCEEEEEeccCC----------C---------CCCCeEEEEeCCCCcEEEcCCCCCCcc
Q 005735 572 NMNRRRGCH-------SLAVLNGKLYALGGFDG----------S---------AMVPSIEVYDPRLGSWMSGEPMKLSRG 625 (680)
Q Consensus 572 ~~p~~r~~~-------s~v~~~~~IyviGG~~~----------~---------~~~~~v~~yD~~t~~W~~v~~lp~~R~ 625 (680)
++|.+.+.. -.-..++.+.+.||.+- . ....+|++|| .+.|+.+..+|.++.
T Consensus 264 ~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~ 341 (381)
T COG3055 264 DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA 341 (381)
T ss_pred CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc
Confidence 888655432 11234778888888421 0 3456799998 899999999999999
Q ss_pred ceEEEEECCEEEEEecccCCCcccceEEEEc
Q 005735 626 YLGAAVVKEAIYVIGGVKNGSEIVDTVERFK 656 (680)
Q Consensus 626 ~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~ 656 (680)
+..++..++.||++||....+..+..|+...
T Consensus 342 YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 342 YGVSLSYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred ceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence 9999999999999999999998888877653
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.54 E-value=4.5e-13 Score=138.79 Aligned_cols=246 Identities=16% Similarity=0.272 Sum_probs=178.1
Q ss_pred EEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCC--CCcEEECCCCC-CCCcccEEEEECCEEEEEccCCC
Q 005735 427 KTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA--NDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGGNG 503 (680)
Q Consensus 427 ~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~--t~~W~~l~~lp-~~r~~~a~~v~~gkIyV~GG~~~ 503 (680)
.++|.+|.+--.-+-+.+++.+||-=|..+. ..+..|.. ...|+++...| .+|....+++++++||||||...
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~----afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT----AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCc----cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 4567788776555777888999996664332 35666665 46899999988 56888889999999999999742
Q ss_pred -----CcccceEEEEeCCCccEEEcc-cccccccceEEEEECC-EEEEEcCCCCC-------------------------
Q 005735 504 -----LECFSDVEMLDLDIGKWIRTR-SMLQKRFALAAAELNG-VLYATGGYDGN------------------------- 551 (680)
Q Consensus 504 -----~~~~~~ve~yD~~t~~W~~i~-~~p~~r~~~s~~~~~g-~Lyv~GG~~~~------------------------- 551 (680)
...++++++||+.+++|..+. ..|....++.++.+++ +||++||.+..
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 235789999999999999986 4566677888888888 99999996421
Q ss_pred ---------CcCceeEEEeCCCCcEEEeccCCC-CCceeEEEEECCEEEEEeccCCC-CCCCeEEEEeCC--CCcEEEcC
Q 005735 552 ---------EYMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGS-AMVPSIEVYDPR--LGSWMSGE 618 (680)
Q Consensus 552 ---------~~~~~v~~yD~~t~~W~~v~~~p~-~r~~~s~v~~~~~IyviGG~~~~-~~~~~v~~yD~~--t~~W~~v~ 618 (680)
.+...++.|||.+++|+.+...|. +++..+++.-++++.++-|.-.. -....++.++.. .-+|..++
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 123567899999999999997774 44444444447778888875332 233445666654 56899998
Q ss_pred CCCCCccceE-------EEEECCEEEEEecccCCC------------------cccceEEEEcCCCCeEecccCCCCCcc
Q 005735 619 PMKLSRGYLG-------AAVVKEAIYVIGGVKNGS------------------EIVDTVERFKEGQGWEEINSRAIGKRC 673 (680)
Q Consensus 619 ~lp~~R~~~s-------~v~~~~~lyV~GG~~~~~------------------~~~~~ve~y~~~~~W~~v~~~p~~~r~ 673 (680)
.+|.+-.... .-..++.++|.||..-.+ ...++|+.|+ ++.|+.++.+|.+ ++
T Consensus 264 ~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~-l~ 341 (381)
T COG3055 264 DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQG-LA 341 (381)
T ss_pred CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCC-cc
Confidence 8887643321 123378899999865111 1456788888 6999999999996 66
Q ss_pred eeEEE
Q 005735 674 FMSVV 678 (680)
Q Consensus 674 ~~sa~ 678 (680)
|..++
T Consensus 342 YG~s~ 346 (381)
T COG3055 342 YGVSL 346 (381)
T ss_pred ceEEE
Confidence 65544
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.40 E-value=1e-13 Score=147.62 Aligned_cols=275 Identities=18% Similarity=0.168 Sum_probs=183.5
Q ss_pred cccCCCCChhhhhh----------hhcccccceEEEcCC--CEEEEEecCCCCcccCeEEEEeCCCCeEEEc---CCCCC
Q 005735 370 MVQSPNNDTKECMY----------EKLLESSDELHLDPS--ESIYLVGGCDGDSWLSTLELYLPSCDVIKTL---KPMSS 434 (680)
Q Consensus 370 ~l~s~~~p~~~~~~----------~~p~~~~~~~~v~~~--~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l---~~mp~ 434 (680)
.+++.+.+.|.... .-|..+.++..|... +.||++||++|...+.++|+|+...+.|..+ +..|.
T Consensus 232 i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 232 ISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred hhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCc
Confidence 34566666674432 234556666666554 4999999999999999999999999999877 35788
Q ss_pred CccceEEEEECC--EEEEEecCCCC------CccceEEEEeCCCCcEEECCC------CCCCCcccEEEEECCE--EEEE
Q 005735 435 ARSYASAAMLNG--ELYIFGGGDGN------SWHNTVESYSPANDEWTSRPS------LNGTKGSLAGATIDNK--IFAI 498 (680)
Q Consensus 435 ~R~~~s~v~~~~--~IyV~GG~~~~------~~~~~v~vyD~~t~~W~~l~~------lp~~r~~~a~~v~~gk--IyV~ 498 (680)
.|+.|.++..-. ++|+.|-+-+. ..-+++|+||..++.|..+.- -|.....|.+++.+.+ |||+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 999999998755 99999987532 234789999999999988732 3455677889999887 9999
Q ss_pred ccCC--CC-cccceEEEEeCCCccEEEccc----------ccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCC
Q 005735 499 GGGN--GL-ECFSDVEMLDLDIGKWIRTRS----------MLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPR 563 (680)
Q Consensus 499 GG~~--~~-~~~~~ve~yD~~t~~W~~i~~----------~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~ 563 (680)
||+. .. ..+..+++||.....|..+.. ....|.++++-.+ +.++|++||.....-++-...||..
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDID 471 (723)
T ss_pred cCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceec
Confidence 9973 22 357789999999999976631 1234556655444 7789999997654333344455543
Q ss_pred CCcEEEec-------cCCCCCc-eeEEE--EECCEEEEEeccCCC------CCCCeEEEEeCCCCcEEEcC---------
Q 005735 564 EHYWTKIA-------NMNRRRG-CHSLA--VLNGKLYALGGFDGS------AMVPSIEVYDPRLGSWMSGE--------- 618 (680)
Q Consensus 564 t~~W~~v~-------~~p~~r~-~~s~v--~~~~~IyviGG~~~~------~~~~~v~~yD~~t~~W~~v~--------- 618 (680)
...-..+. .+...++ ...+. .-...|.+.-|.... ...+.+|+|+..++.|..+.
T Consensus 472 ~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~ 551 (723)
T KOG2437|consen 472 SEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDN 551 (723)
T ss_pred cccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccC
Confidence 32222221 1111111 11111 114567766665321 34567899999999996532
Q ss_pred ---------------CCCCCccceEEEEE--CCEEEEEecccC
Q 005735 619 ---------------PMKLSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 619 ---------------~lp~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
.++.+|..|+.++. ..-+|.+||..+
T Consensus 552 dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~ 594 (723)
T KOG2437|consen 552 DTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPG 594 (723)
T ss_pred CceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCC
Confidence 13345655554432 456899999765
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.04 E-value=9.4e-11 Score=125.34 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=135.4
Q ss_pred CCCccceEEEEECC--EEEEEecCCCCCccceEEEEeCCCCcEEEC---CCCCCCCcccEEEEECC--EEEEEccCCCC-
Q 005735 433 SSARSYASAAMLNG--ELYIFGGGDGNSWHNTVESYSPANDEWTSR---PSLNGTKGSLAGATIDN--KIFAIGGGNGL- 504 (680)
Q Consensus 433 p~~R~~~s~v~~~~--~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l---~~lp~~r~~~a~~v~~g--kIyV~GG~~~~- 504 (680)
|..|.+|.++...+ .||+.||+++-..+.+.|.|+...+.|..+ ...|..|..|-+++--. |+|++|-+-+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 45699999998855 999999999988899999999999999877 34788999999988755 89999885221
Q ss_pred -----cccceEEEEeCCCccEEEcc------cccccccceEEEEECCE--EEEEcCCCCC---CcCceeEEEeCCCCcEE
Q 005735 505 -----ECFSDVEMLDLDIGKWIRTR------SMLQKRFALAAAELNGV--LYATGGYDGN---EYMNSAERFDPREHYWT 568 (680)
Q Consensus 505 -----~~~~~ve~yD~~t~~W~~i~------~~p~~r~~~s~~~~~g~--Lyv~GG~~~~---~~~~~v~~yD~~t~~W~ 568 (680)
...+++|.||..++.|..+. .=|...+.|.+++.+++ |||+||.... .....++.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 23578999999999998773 23556789999999877 9999996432 34567999999999998
Q ss_pred EeccC----------CCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 569 KIANM----------NRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 569 ~v~~~----------p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
.+..- ...|.+|.+-.+ +..+|++||.....-++-.+.||+..
T Consensus 418 ~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 418 LLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDS 472 (723)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecc
Confidence 77421 133444444333 67899999976554444445565543
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.98 E-value=1.1e-09 Score=84.09 Aligned_cols=49 Identities=33% Similarity=0.727 Sum_probs=46.1
Q ss_pred CccceEEEEECCEEEEEecCCC-CCccceEEEEeCCCCcEEECCCCCCCC
Q 005735 435 ARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPSLNGTK 483 (680)
Q Consensus 435 ~R~~~s~v~~~~~IyV~GG~~~-~~~~~~v~vyD~~t~~W~~l~~lp~~r 483 (680)
+|.+|++++++++|||+||... ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5889999999999999999987 788899999999999999999999887
No 34
>PF13964 Kelch_6: Kelch motif
Probab=98.89 E-value=3.5e-09 Score=81.27 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=45.5
Q ss_pred CCcccEEEEECCEEEEEccCCC-CcccceEEEEeCCCccEEEcccccccc
Q 005735 482 TKGSLAGATIDNKIFAIGGGNG-LECFSDVEMLDLDIGKWIRTRSMLQKR 530 (680)
Q Consensus 482 ~r~~~a~~v~~gkIyV~GG~~~-~~~~~~ve~yD~~t~~W~~i~~~p~~r 530 (680)
+|..+++++++++|||+||... ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5889999999999999999877 677899999999999999999999886
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.71 E-value=1.7e-08 Score=76.17 Aligned_cols=46 Identities=35% Similarity=0.704 Sum_probs=42.6
Q ss_pred CccceEEEEECCEEEEEecCCC-CCccceEEEEeCCCCcEEECCCCC
Q 005735 435 ARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPSLN 480 (680)
Q Consensus 435 ~R~~~s~v~~~~~IyV~GG~~~-~~~~~~v~vyD~~t~~W~~l~~lp 480 (680)
+|++|++++++++|||+||... ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5899999999999999999987 888999999999999999999886
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.63 E-value=4.2e-08 Score=74.05 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=42.2
Q ss_pred CCcccEEEEECCEEEEEccCCC-CcccceEEEEeCCCccEEEccccc
Q 005735 482 TKGSLAGATIDNKIFAIGGGNG-LECFSDVEMLDLDIGKWIRTRSML 527 (680)
Q Consensus 482 ~r~~~a~~v~~gkIyV~GG~~~-~~~~~~ve~yD~~t~~W~~i~~~p 527 (680)
||..+++++++++|||+||.+. ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999987 678899999999999999999886
No 37
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.55 E-value=2.9e-05 Score=79.17 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=117.4
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCcc---c--eEEEEE----CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCC-C
Q 005735 414 STLELYLPSCDVIKTLKPMSSARS---Y--ASAAML----NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGT-K 483 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~---~--~s~v~~----~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~-r 483 (680)
..+.++||.|++|+.+|+.+.++. . ++.+.. .-+|..+...........+++|+..++.|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 468999999999999986554211 1 111111 12566565432222345789999999999998743322 1
Q ss_pred cccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEE-cccccccc----cceEEEEECCEEEEEcCCCCCCcCceeE
Q 005735 484 GSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR-TRSMLQKR----FALAAAELNGVLYATGGYDGNEYMNSAE 558 (680)
Q Consensus 484 ~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~-i~~~p~~r----~~~s~~~~~g~Lyv~GG~~~~~~~~~v~ 558 (680)
.....+.++|.+|-+...........+..||+.+.+|.. ++ +|... ....++.++|+|.++....... .-+||
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IW 171 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLW 171 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC-cEEEE
Confidence 122377889999988754322222268999999999995 54 33322 2456778899999887543211 13677
Q ss_pred EEe-CCCCcEEEeccCCC---CCc----eeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 559 RFD-PREHYWTKIANMNR---RRG----CHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 559 ~yD-~~t~~W~~v~~~p~---~r~----~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
+.+ -....|++.-.++. +.. ....+..+++|++..... ...-+..||+.++
T Consensus 172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 775 33567988643321 111 123344578888876521 1113889998764
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.55 E-value=1.6e-07 Score=71.79 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=43.4
Q ss_pred CCEEEEEecCC--CCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE
Q 005735 445 NGELYIFGGGD--GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 445 ~~~IyV~GG~~--~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
|++|||+||.. ....++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 677889999999999999999999999999999864
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.48 E-value=3.5e-07 Score=69.84 Aligned_cols=46 Identities=33% Similarity=0.632 Sum_probs=41.8
Q ss_pred CccceEEEEECCEEEEEecC---CCCCccceEEEEeCCCCcEEECCCCC
Q 005735 435 ARSYASAAMLNGELYIFGGG---DGNSWHNTVESYSPANDEWTSRPSLN 480 (680)
Q Consensus 435 ~R~~~s~v~~~~~IyV~GG~---~~~~~~~~v~vyD~~t~~W~~l~~lp 480 (680)
+|..|++++++++|||+||. ......+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 46777899999999999999998875
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.47 E-value=3.6e-07 Score=69.80 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=43.3
Q ss_pred CCEEEEEecCC--CCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE
Q 005735 398 SESIYLVGGCD--GDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML 444 (680)
Q Consensus 398 ~~~Iyv~GG~~--~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~ 444 (680)
++.|||+||.+ +...++++++||+.+++|++++.+|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 47899999998 678889999999999999999999999999999864
No 41
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=3.3e-07 Score=68.54 Aligned_cols=47 Identities=32% Similarity=0.659 Sum_probs=42.7
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECC
Q 005735 447 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN 493 (680)
Q Consensus 447 ~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g 493 (680)
+|||+||..+....+++++||+.+++|+..++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998876678899999999999999999999999999998864
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.43 E-value=5.2e-07 Score=68.89 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=41.2
Q ss_pred CCcccEEEEECCEEEEEccC---CCCcccceEEEEeCCCccEEEccccc
Q 005735 482 TKGSLAGATIDNKIFAIGGG---NGLECFSDVEMLDLDIGKWIRTRSML 527 (680)
Q Consensus 482 ~r~~~a~~v~~gkIyV~GG~---~~~~~~~~ve~yD~~t~~W~~i~~~p 527 (680)
+|..|++++++++|||+||. ......+++++||+++.+|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 45557899999999999999998875
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.42 E-value=2.6e-07 Score=70.46 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=31.4
Q ss_pred CccceEEEEE-CCEEEEEecCCCC-CccceEEEEeCCCCcEEECCCCC
Q 005735 435 ARSYASAAML-NGELYIFGGGDGN-SWHNTVESYSPANDEWTSRPSLN 480 (680)
Q Consensus 435 ~R~~~s~v~~-~~~IyV~GG~~~~-~~~~~v~vyD~~t~~W~~l~~lp 480 (680)
+|.+|+++.+ +++|||+||.... ..++++|+||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6899999999 5899999999864 68999999999999999998877
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.33 E-value=1.2e-05 Score=82.24 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=103.7
Q ss_pred EEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCC----CcEEEec-cCCCCCceeEEEE
Q 005735 510 VEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPRE----HYWTKIA-NMNRRRGCHSLAV 584 (680)
Q Consensus 510 ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t----~~W~~v~-~~p~~r~~~s~v~ 584 (680)
...||+.+++++.+......-+...+..-+|+++++||.... .+.+-.|++.+ ..|.+.+ .|..+|+..++..
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 458999999998876443333333333348999999997542 24566788765 6798886 5899999999888
Q ss_pred E-CCEEEEEeccCCCCCCCeEEEEeCCCC-----cEEEcC----CCCCCccceEEEEECCEEEEEecccCCCcccceEEE
Q 005735 585 L-NGKLYALGGFDGSAMVPSIEVYDPRLG-----SWMSGE----PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVER 654 (680)
Q Consensus 585 ~-~~~IyviGG~~~~~~~~~v~~yD~~t~-----~W~~v~----~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~ 654 (680)
+ +|+++|+||... ...+.+..... .|..+. ..+...+.+..+.-+|+||+++.... .+
T Consensus 126 L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--------~i 193 (243)
T PF07250_consen 126 LPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--------II 193 (243)
T ss_pred CCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--------EE
Confidence 7 899999999762 22333333211 222222 23334444555556999999998543 68
Q ss_pred EcCC-CCe-EecccCCCCCccee
Q 005735 655 FKEG-QGW-EEINSRAIGKRCFM 675 (680)
Q Consensus 655 y~~~-~~W-~~v~~~p~~~r~~~ 675 (680)
||+. +++ +.+|.+|-+.|.|.
T Consensus 194 ~d~~~n~v~~~lP~lPg~~R~YP 216 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGGPRNYP 216 (243)
T ss_pred EeCCCCeEEeeCCCCCCCceecC
Confidence 8888 766 88999999988874
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.31 E-value=7.4e-07 Score=67.91 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=31.7
Q ss_pred CccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC-CCeEecccCC
Q 005735 623 SRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRA 668 (680)
Q Consensus 623 ~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p 668 (680)
||.+|+++.+ +++||||||....+..++++++||+. ++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6899999999 58999999999887899999999999 9999998887
No 46
>smart00612 Kelch Kelch domain.
Probab=98.29 E-value=1.2e-06 Score=65.37 Aligned_cols=47 Identities=38% Similarity=0.656 Sum_probs=42.5
Q ss_pred EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECC
Q 005735 400 SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNG 446 (680)
Q Consensus 400 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~ 446 (680)
+||++||.++....+++++||+.+++|..+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 38999999776778899999999999999999999999999988764
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.24 E-value=0.00021 Score=72.85 Aligned_cols=202 Identities=16% Similarity=0.134 Sum_probs=118.5
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCc---cc-EEEEECC-----EEEEEccCCCCcccceEEEEe
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKG---SL-AGATIDN-----KIFAIGGGNGLECFSDVEMLD 514 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~---~~-a~~v~~g-----kIyV~GG~~~~~~~~~ve~yD 514 (680)
++|-|.+..+ ..+.++||.|++|..+|+.+.++. .+ .+.-++. ||..+...........+++|+
T Consensus 4 CnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 4 CDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred cceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 4566644432 468999999999999986544211 11 1112221 455554422122345789999
Q ss_pred CCCccEEEccccccc-ccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-eccCCCCC----ceeEEEEECCE
Q 005735 515 LDIGKWIRTRSMLQK-RFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTK-IANMNRRR----GCHSLAVLNGK 588 (680)
Q Consensus 515 ~~t~~W~~i~~~p~~-r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-v~~~p~~r----~~~s~v~~~~~ 588 (680)
..+++|+.+...+.. ......+.++|.||-+...........|..||..+.+|.. ++ +|... ....++.++|+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~ 155 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGK 155 (230)
T ss_pred eCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCE
Confidence 999999998743322 1122267789999988743321111268999999999995 54 34332 23456778999
Q ss_pred EEEEeccCCCCCCCeEEEEe-CCCCcEEEcCCCC---CC--cc--ceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 589 LYALGGFDGSAMVPSIEVYD-PRLGSWMSGEPMK---LS--RG--YLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 589 IyviGG~~~~~~~~~v~~yD-~~t~~W~~v~~lp---~~--R~--~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
|.++...... ..-++|+.+ -....|...-.++ .+ +. ....+..++.|++..+.. . ...+..|+++
T Consensus 156 L~~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~---~~~~~~y~~~ 228 (230)
T TIGR01640 156 LAVLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N---PFYIFYYNVG 228 (230)
T ss_pred EEEEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C---ceEEEEEecc
Confidence 8887654321 124678875 3356798743322 11 11 123344578888876531 1 1247778775
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.22 E-value=2e-05 Score=80.57 Aligned_cols=149 Identities=14% Similarity=0.276 Sum_probs=100.6
Q ss_pred eEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC----CcEEECC-CCCCCCcccEEE
Q 005735 415 TLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN----DEWTSRP-SLNGTKGSLAGA 489 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t----~~W~~l~-~lp~~r~~~a~~ 489 (680)
.-..||+.+++++.+......-+...+..-+|.+++.||.... ...+..|++.+ ..|...+ .|..+|.+.++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 3567999999999886543333333334448999999998653 24577788765 6898876 489999999998
Q ss_pred EE-CCEEEEEccCCCCcccceEEEEeCCC-----ccEEEccc----ccccccceEEEEECCEEEEEcCCCCCCcCceeEE
Q 005735 490 TI-DNKIFAIGGGNGLECFSDVEMLDLDI-----GKWIRTRS----MLQKRFALAAAELNGVLYATGGYDGNEYMNSAER 559 (680)
Q Consensus 490 v~-~gkIyV~GG~~~~~~~~~ve~yD~~t-----~~W~~i~~----~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~ 559 (680)
.+ +|+++|+||... ...|.+.... ..|..+.. .+...+-+....=+|+||+++.. ...+
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 88 889999999762 2334444322 12222221 22333444444449999999874 4578
Q ss_pred EeCCCCcE-EEeccCCCC
Q 005735 560 FDPREHYW-TKIANMNRR 576 (680)
Q Consensus 560 yD~~t~~W-~~v~~~p~~ 576 (680)
||..++++ +.++.+|..
T Consensus 194 ~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EeCCCCeEEeeCCCCCCC
Confidence 99999987 788888853
No 49
>PLN02772 guanylate kinase
Probab=98.12 E-value=1.6e-05 Score=86.16 Aligned_cols=84 Identities=13% Similarity=0.312 Sum_probs=69.6
Q ss_pred CCCccceEEEEECCEEEEEecCCCCC-ccceEEEEeCCCCcEEEC---CCCCCCCcccEEEEE-CCEEEEEccCCCCccc
Q 005735 433 SSARSYASAAMLNGELYIFGGGDGNS-WHNTVESYSPANDEWTSR---PSLNGTKGSLAGATI-DNKIFAIGGGNGLECF 507 (680)
Q Consensus 433 p~~R~~~s~v~~~~~IyV~GG~~~~~-~~~~v~vyD~~t~~W~~l---~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~ 507 (680)
..++..++++.+++++||+||.+... ..+.+++||..|++|... ...|.+|-+|+++++ +++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 35788999999999999999987643 678999999999999765 467899999999999 67899998865442
Q ss_pred ceEEEEeCCCc
Q 005735 508 SDVEMLDLDIG 518 (680)
Q Consensus 508 ~~ve~yD~~t~ 518 (680)
.++|.+...|.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 67888777664
No 50
>PLN02772 guanylate kinase
Probab=98.05 E-value=2.4e-05 Score=84.87 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=69.5
Q ss_pred CCCCcccEEEEECCEEEEEccCCCCc-ccceEEEEeCCCccEEEc---ccccccccceEEEEE-CCEEEEEcCCCCCCcC
Q 005735 480 NGTKGSLAGATIDNKIFAIGGGNGLE-CFSDVEMLDLDIGKWIRT---RSMLQKRFALAAAEL-NGVLYATGGYDGNEYM 554 (680)
Q Consensus 480 p~~r~~~a~~v~~gkIyV~GG~~~~~-~~~~ve~yD~~t~~W~~i---~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~ 554 (680)
..++..++++++++++||+||.+... ..+.+++||..+.+|... +..|.+|.+|+++++ +++|+|+++.... -
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--D 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--c
Confidence 34788899999999999999987654 678999999999999865 578899999999999 6899999875443 2
Q ss_pred ceeEEEeCCCC
Q 005735 555 NSAERFDPREH 565 (680)
Q Consensus 555 ~~v~~yD~~t~ 565 (680)
.++|.+...+.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 67888877663
No 51
>PF13854 Kelch_5: Kelch motif
Probab=97.86 E-value=3.2e-05 Score=57.05 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.3
Q ss_pred CCCCccceEEEEECCEEEEEecCC--CCCccceEEEEeCCC
Q 005735 432 MSSARSYASAAMLNGELYIFGGGD--GNSWHNTVESYSPAN 470 (680)
Q Consensus 432 mp~~R~~~s~v~~~~~IyV~GG~~--~~~~~~~v~vyD~~t 470 (680)
+|.+|..|++++++++|||+||.. ....++++|+||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999998 477889999999876
No 52
>PF13854 Kelch_5: Kelch motif
Probab=97.77 E-value=5.5e-05 Score=55.77 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCCCCcccEEEEECCEEEEEccCCC--CcccceEEEEeCCC
Q 005735 479 LNGTKGSLAGATIDNKIFAIGGGNG--LECFSDVEMLDLDI 517 (680)
Q Consensus 479 lp~~r~~~a~~v~~gkIyV~GG~~~--~~~~~~ve~yD~~t 517 (680)
+|.+|..|++++++++||++||... ...++++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999883 66789999999876
No 53
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.29 E-value=0.034 Score=57.22 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=94.7
Q ss_pred CCCCccceEEEEE---C--CEEE-EEecCC-CCCccceEEEEeCCC---Cc-E-------EECCCCCCCCcccEEEEE--
Q 005735 432 MSSARSYASAAML---N--GELY-IFGGGD-GNSWHNTVESYSPAN---DE-W-------TSRPSLNGTKGSLAGATI-- 491 (680)
Q Consensus 432 mp~~R~~~s~v~~---~--~~Iy-V~GG~~-~~~~~~~v~vyD~~t---~~-W-------~~l~~lp~~r~~~a~~v~-- 491 (680)
+|..|+.+.+... + ...| +.||.. ++...+++|+....+ |+ - .....+|.+|++|++.++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 4445555444331 2 2344 457776 455566677765443 21 1 234678999999998776
Q ss_pred CCE--EEEEccCCCC--------------cccceEEEEeCCCccEE--EcccccccccceEEEEECCEEEEEcCCCCC--
Q 005735 492 DNK--IFAIGGGNGL--------------ECFSDVEMLDLDIGKWI--RTRSMLQKRFALAAAELNGVLYATGGYDGN-- 551 (680)
Q Consensus 492 ~gk--IyV~GG~~~~--------------~~~~~ve~yD~~t~~W~--~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~-- 551 (680)
.|| +.+|||+... .+...|+..|++-+=.+ .++.+......|.+..-++.+|++||..-.
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd 178 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESD 178 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCC
Confidence 344 8889996311 13456777788776543 346666777888888889999999997533
Q ss_pred CcCceeEEEeC--CCCc-EEEeccCCCCCceeEEEEE---CCEEEEEeccCCC
Q 005735 552 EYMNSAERFDP--REHY-WTKIANMNRRRGCHSLAVL---NGKLYALGGFDGS 598 (680)
Q Consensus 552 ~~~~~v~~yD~--~t~~-W~~v~~~p~~r~~~s~v~~---~~~IyviGG~~~~ 598 (680)
.....+++... --++ +....-++......++++. .+..+|+||+..+
T Consensus 179 ~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 179 SRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred CCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 22234444322 1111 1111122223322333222 3568889998654
No 54
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.29 E-value=0.25 Score=49.79 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=120.2
Q ss_pred eEEEEeCCCCe--EEEcCCCCCCccceE--EEEECCEEEEEecCCCCCccceEEEEeCCCCc--EEECCCCCCCCcccEE
Q 005735 415 TLELYLPSCDV--IKTLKPMSSARSYAS--AAMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSRPSLNGTKGSLAG 488 (680)
Q Consensus 415 ~v~~yd~~t~~--W~~l~~mp~~R~~~s--~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~--W~~l~~lp~~r~~~a~ 488 (680)
.+..+|+.+++ |+.-. ........ .+..++.+|+..+ ...++++|..+++ |+.-. +.+.... .
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA-P 72 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-E
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-e
Confidence 47788887764 76632 11122222 3447899999843 2469999998875 55432 2222222 4
Q ss_pred EEECCEEEEEccCCCCcccceEEEEeCCCc--cEE-Ecccccc--cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCC
Q 005735 489 ATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KWI-RTRSMLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPR 563 (680)
Q Consensus 489 ~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~--~W~-~i~~~p~--~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~ 563 (680)
...++.||+..+ ...+..+|..++ .|+ .....+. ..........++.+|+... ...+..+|+.
T Consensus 73 ~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~ 140 (238)
T PF13360_consen 73 VVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPK 140 (238)
T ss_dssp EEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETT
T ss_pred eecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEecC
Confidence 777999988752 126889998877 488 3433222 2334445555777777643 2478999999
Q ss_pred CCc--EEEeccCCCCCc--------eeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc--EEEcCCCCCCccceEEEE
Q 005735 564 EHY--WTKIANMNRRRG--------CHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS--WMSGEPMKLSRGYLGAAV 631 (680)
Q Consensus 564 t~~--W~~v~~~p~~r~--------~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~--W~~v~~lp~~R~~~s~v~ 631 (680)
+++ |+.-...+.... ....+..++.+|+..+.. .+..+|..++. |+.. ... .......
T Consensus 141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~--~~~~~~~ 210 (238)
T PF13360_consen 141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG--IYSLPSV 210 (238)
T ss_dssp TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS---ECECEEC
T ss_pred CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC--ccCCcee
Confidence 875 766544433211 123333467888876532 25666999987 7333 211 1222344
Q ss_pred ECCEEEEEecccCCCcccceEEEEcCC---CCeE
Q 005735 632 VKEAIYVIGGVKNGSEIVDTVERFKEG---QGWE 662 (680)
Q Consensus 632 ~~~~lyV~GG~~~~~~~~~~ve~y~~~---~~W~ 662 (680)
.++.||+.. .+ ..+..++.. -.|.
T Consensus 211 ~~~~l~~~~-~~------~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 211 DGGTLYVTS-SD------GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CCTEEEEEE-TT------TEEEEEETTTTEEEEE
T ss_pred eCCEEEEEe-CC------CEEEEEECCCCCEEeE
Confidence 567777766 32 358888876 3465
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.28 E-value=0.12 Score=57.02 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=117.6
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCC--CccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSS--ARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND-- 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~--~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~-- 471 (680)
++.||+..+. ..++.+|+.+++ |+.-...+. .+...+.++.++.+|+..+. ..+..+|..++
T Consensus 160 ~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~ 227 (394)
T PRK11138 160 DGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQL 227 (394)
T ss_pred CCEEEEECCC------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChh
Confidence 6677764432 358999998875 776533221 12233445567777774432 35778888876
Q ss_pred cEEECCCCCCC--------CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccccceEEEEECCE
Q 005735 472 EWTSRPSLNGT--------KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALAAAELNGV 541 (680)
Q Consensus 472 ~W~~l~~lp~~--------r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r~~~s~~~~~g~ 541 (680)
.|+.-...+.. ....+-++.++.+|+.+. ...+.++|+.+++ |+.-- ... ...+..+++
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~ 296 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY------NGNLVALDLRSGQIVWKREY--GSV---NDFAVDGGR 296 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEEc------CCeEEEEECCCCCEEEeecC--CCc---cCcEEECCE
Confidence 47643211110 011233566899998653 1357899998875 86531 111 124567899
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc--EEEc
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS--WMSG 617 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~--W~~v 617 (680)
||+.... ..++.+|+.+++ |+.-. ...+...+.++.++.||+... + ..++++|+.+.+ |+.
T Consensus 297 vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~~~~~~- 361 (394)
T PRK11138 297 IYLVDQN------DRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGRFVAQQ- 361 (394)
T ss_pred EEEEcCC------CeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCCEEEEE-
Confidence 9997532 368899988764 75321 112223344557888887543 2 357889988775 443
Q ss_pred CCCCCCccceEEEEECCEEEEEe
Q 005735 618 EPMKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 618 ~~lp~~R~~~s~v~~~~~lyV~G 640 (680)
.+.......+.++.+++|||-.
T Consensus 362 -~~~~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 362 -KVDSSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred -EcCCCcceeCCEEECCEEEEEe
Confidence 1222223445566788888763
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.22 E-value=0.22 Score=54.97 Aligned_cols=214 Identities=15% Similarity=0.239 Sum_probs=123.8
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc--E
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE--W 473 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~--W 473 (680)
++.||+.+. + ..++.+|..+++ |+.-..- ....+.++.++.||+..+. ..++.+|+.+++ |
T Consensus 120 ~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~---~~~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W 184 (394)
T PRK11138 120 GGKVYIGSE-K-----GQVYALNAEDGEVAWQTKVAG---EALSRPVVSDGLVLVHTSN------GMLQALNESDGAVKW 184 (394)
T ss_pred CCEEEEEcC-C-----CEEEEEECCCCCCcccccCCC---ceecCCEEECCEEEEECCC------CEEEEEEccCCCEee
Confidence 677776432 2 368999998774 8654221 1122335568888875432 358999998765 8
Q ss_pred EECCCCCC--CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEccccccc--------ccceEEEEECCE
Q 005735 474 TSRPSLNG--TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQK--------RFALAAAELNGV 541 (680)
Q Consensus 474 ~~l~~lp~--~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~--------r~~~s~~~~~g~ 541 (680)
+.-...+. .+...+-++.++.+|+..+ + ..+..+|+.+++ |+.-...+.. ....+-++.++.
T Consensus 185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 185 TVNLDVPSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred eecCCCCcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence 76433221 1222334556777777543 1 346788888774 8643211110 112334566899
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC--cEEEc
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSG 617 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~--~W~~v 617 (680)
+|+.+. + ..++.+|+.+++ |+.- .... ...+..++.||+... ...++.+|+.+. .|+.-
T Consensus 259 vy~~~~-~-----g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~------~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 259 VYALAY-N-----GNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQ------NDRVYALDTRGGVELWSQS 321 (394)
T ss_pred EEEEEc-C-----CeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcC------CCeEEEEECCCCcEEEccc
Confidence 998653 2 368899998764 8653 1111 134566889998753 246899999876 47542
Q ss_pred CCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 618 EPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 618 ~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
. ...+...+.++.++.||+... + ..++++++.
T Consensus 322 ~--~~~~~~~sp~v~~g~l~v~~~-~------G~l~~ld~~ 353 (394)
T PRK11138 322 D--LLHRLLTAPVLYNGYLVVGDS-E------GYLHWINRE 353 (394)
T ss_pred c--cCCCcccCCEEECCEEEEEeC-C------CEEEEEECC
Confidence 1 122334455567888887532 2 236666655
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.14 E-value=0.054 Score=58.79 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=83.7
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCccc-----ceEEEE--eC-
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECF-----SDVEML--DL- 515 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~-----~~ve~y--D~- 515 (680)
.+++|+.++.. ..+.+||..+..-...|.++.+.....++.++++||++......... ...|++ ++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 48899988665 23789999999999889988888888888899999999886322211 144554 31
Q ss_pred -------CCccEEEccccccccc-------ceEEEEE-CCEEEE-EcCCCCCCcCceeEEEeCCCCcEEEeccCC
Q 005735 516 -------DIGKWIRTRSMLQKRF-------ALAAAEL-NGVLYA-TGGYDGNEYMNSAERFDPREHYWTKIANMN 574 (680)
Q Consensus 516 -------~t~~W~~i~~~p~~r~-------~~s~~~~-~g~Lyv-~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p 574 (680)
..-.|+.+|+.|..+. -.+-+++ +..|+| +.|.. ...+.||+.+.+|+.++...
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecccee
Confidence 2236788877554322 3344555 667888 33321 24799999999999997543
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.93 E-value=0.5 Score=51.65 Aligned_cols=206 Identities=18% Similarity=0.196 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCC--CccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSS--ARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND-- 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~--~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~-- 471 (680)
++.+|+..+ ...++.+|+.+++ |+.-...+. .+...+.+..++.+|+ |... ..+..+|+.++
T Consensus 145 ~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~tG~~ 212 (377)
T TIGR03300 145 NGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQTGQP 212 (377)
T ss_pred CCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEccCCCE
Confidence 566666433 2358999998764 765432221 1223344556776554 4332 25888998776
Q ss_pred cEEECCCCCCCC--------cccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccccceEEEEECCE
Q 005735 472 EWTSRPSLNGTK--------GSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALAAAELNGV 541 (680)
Q Consensus 472 ~W~~l~~lp~~r--------~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r~~~s~~~~~g~ 541 (680)
.|+.--..+... ...+.++.++.||+.+. ...+.+||+.+++ |..-. . .....+..+++
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~ 281 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNR 281 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCE
Confidence 475432212111 11233456788888643 2358899998764 76531 1 12233456889
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCC--cEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREH--YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
||+... + ..++.+|..++ .|+.-. +. .+...+.+..++.||+.. .+ ..++++|..+.+=..--.
T Consensus 282 vyv~~~-~-----G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i~g~~l~~~~-~~-----G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 282 LYVTDA-D-----GVVVALDRRSGSELWKNDE-LK-YRQLTAPAVVGGYLVVGD-FE-----GYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEEECC-C-----CeEEEEECCCCcEEEcccc-cc-CCccccCEEECCEEEEEe-CC-----CEEEEEECCCCCEEEEEE
Confidence 998642 1 36888998776 476421 11 112223345677777643 22 358889987653222111
Q ss_pred CCCCccceEEEEECCEEEEEe
Q 005735 620 MKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 620 lp~~R~~~s~v~~~~~lyV~G 640 (680)
........+.++.+++||+.+
T Consensus 348 ~~~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 348 TDGSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred cCCCccccCCEEECCEEEEEe
Confidence 122223455567788877654
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.84 E-value=0.82 Score=49.92 Aligned_cols=218 Identities=16% Similarity=0.207 Sum_probs=121.0
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--cE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EW 473 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W 473 (680)
++.||+.+.. ..++.||+.+++ |+.-..- +...+.++.++.+|+.+. + ..++.+|..++ .|
T Consensus 65 ~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W 129 (377)
T TIGR03300 65 GGKVYAADAD------GTVVALDAETGKRLWRVDLDE---RLSGGVGADGGLVFVGTE-K-----GEVIALDAEDGKELW 129 (377)
T ss_pred CCEEEEECCC------CeEEEEEccCCcEeeeecCCC---CcccceEEcCCEEEEEcC-C-----CEEEEEECCCCcEee
Confidence 6677765532 358999988765 7643221 112234455778886443 2 36899998765 47
Q ss_pred EECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccc--cccceEEEEECCEEEEEcCCC
Q 005735 474 TSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQ--KRFALAAAELNGVLYATGGYD 549 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~--~r~~~s~~~~~g~Lyv~GG~~ 549 (680)
+.-.. .. ...+.++.++++|+..+ ...+..+|+.+++ |+.-...+. .+...+.+..++.+|+ |..+
T Consensus 130 ~~~~~--~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~ 199 (377)
T TIGR03300 130 RAKLS--SE-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG 199 (377)
T ss_pred eeccC--ce-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC
Confidence 65321 11 11223445788887543 2357899998764 765432221 1222334555776654 3322
Q ss_pred CCCcCceeEEEeCCCC--cEEEeccCCCCC--------ceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC--cEEEc
Q 005735 550 GNEYMNSAERFDPREH--YWTKIANMNRRR--------GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSG 617 (680)
Q Consensus 550 ~~~~~~~v~~yD~~t~--~W~~v~~~p~~r--------~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~--~W~~v 617 (680)
..+..+|+.++ .|+.-...+... ...+.+..++.+|+... ...+++||+++. .|..-
T Consensus 200 -----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 200 -----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred -----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCcEEEeec
Confidence 26888998776 476432222111 11233445788887643 235889998775 46543
Q ss_pred CCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC---CCeEe
Q 005735 618 EPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG---QGWEE 663 (680)
Q Consensus 618 ~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~---~~W~~ 663 (680)
. ......++.+++||+.... ..+++++.. ..|+.
T Consensus 269 --~---~~~~~p~~~~~~vyv~~~~-------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 269 --A---SSYQGPAVDDNRLYVTDAD-------GVVVALDRRSGSELWKN 305 (377)
T ss_pred --c---CCccCceEeCCEEEEECCC-------CeEEEEECCCCcEEEcc
Confidence 1 1223445668888886421 246777765 34754
No 60
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.82 E-value=0.053 Score=55.82 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=90.8
Q ss_pred EEEEccCCC-CcccceEEEEeCCCcc----E-------EEcccccccccceEEEEE----CCEEEEEcCCCCC-------
Q 005735 495 IFAIGGGNG-LECFSDVEMLDLDIGK----W-------IRTRSMLQKRFALAAAEL----NGVLYATGGYDGN------- 551 (680)
Q Consensus 495 IyV~GG~~~-~~~~~~ve~yD~~t~~----W-------~~i~~~p~~r~~~s~~~~----~g~Lyv~GG~~~~------- 551 (680)
.++.||... ++..+.+++....+.. - +.++++|.+|++|++-++ ....++|||..-.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 455577654 3445667776555432 1 234789999999998777 2347888985321
Q ss_pred -------CcCceeEEEeCCCCcEEE--eccCCCCCceeEEEEECCEEEEEeccCCC--CCCCeEEEEeCCC---CcEEEc
Q 005735 552 -------EYMNSAERFDPREHYWTK--IANMNRRRGCHSLAVLNGKLYALGGFDGS--AMVPSIEVYDPRL---GSWMSG 617 (680)
Q Consensus 552 -------~~~~~v~~yD~~t~~W~~--v~~~p~~r~~~s~v~~~~~IyviGG~~~~--~~~~~v~~yD~~t---~~W~~v 617 (680)
.....|+..|++-+-++. ++.+......|.+..-++.+|++||+.-. ..-..++....+- .-+..-
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 223467888888776543 46667777888888889999999997432 2233444433211 111111
Q ss_pred CCCCCCccceEEEEE---CCEEEEEecccCCC
Q 005735 618 EPMKLSRGYLGAAVV---KEAIYVIGGVKNGS 646 (680)
Q Consensus 618 ~~lp~~R~~~s~v~~---~~~lyV~GG~~~~~ 646 (680)
..++......++++. .+..+|+||+....
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 223333443344333 46788899987543
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.76 E-value=0.73 Score=46.32 Aligned_cols=182 Identities=15% Similarity=0.181 Sum_probs=108.3
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
.+..++.+|+..+ ...++.+|..+++ |+.-. +..-.. ..+..++.||+..+. ..++.+|..++
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~~~~~v~v~~~~------~~l~~~d~~tG 96 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISG-APVVDGGRVYVGTSD------GSLYALDAKTG 96 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGS-GEEEETTEEEEEETT------SEEEEEETTTS
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccc-eeeecccccccccce------eeeEecccCCc
Confidence 3445888888743 2569999998886 55443 222111 146779999987732 26899997765
Q ss_pred --cEE-ECCCCCCC--CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccc--------cceEEE
Q 005735 472 --EWT-SRPSLNGT--KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKR--------FALAAA 536 (680)
Q Consensus 472 --~W~-~l~~lp~~--r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r--------~~~s~~ 536 (680)
.|+ .....+.. ......++.++.+|+... ...+..+|+.+++ |......+... .....+
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 587 34332222 233445555777777643 3568899999875 76644333211 122333
Q ss_pred EECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeE-EEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 537 ELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHS-LAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s-~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
..++.+|+..+.. .+..+|..++. |+.. ... ... ....++.||+.. . ...++++|+++++
T Consensus 171 ~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 171 ISDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTS-S-----DGRLYALDLKTGK 233 (238)
T ss_dssp CCTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS----ECECEECCCTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred EECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC---ccCCceeeCCEEEEEe-C-----CCEEEEEECCCCC
Confidence 3468888876543 25566999887 7332 211 222 344577777776 2 2578999999874
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.64 E-value=0.84 Score=45.37 Aligned_cols=193 Identities=16% Similarity=0.240 Sum_probs=87.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.+..+.+++.++++|+.+ ..+..||..++.-.......... ...+... ++..+++++.+ ..+.+||..
T Consensus 13 ~~~~~~~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~ 81 (289)
T cd00200 13 TCVAFSPDGKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSD-----KTIRLWDLE 81 (289)
T ss_pred EEEEEcCCCCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcc-eeEEEECCCCCEEEEEcCC-----CeEEEEEcC
Confidence 345555566777777753 35777777665421111111111 1122222 44466666653 357888887
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC-CEEEEEc
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN-GVLYATG 546 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~-g~Lyv~G 546 (680)
+.+.... +........+..+ ++++++.|+.+ ..+..||+.+.+-...-. .......++.... +.+++.|
T Consensus 82 ~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 82 TGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred cccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEE
Confidence 6432111 1111111222222 34666665533 357788888554322111 0111112222233 4555544
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
..+ ..+.+||..+.+-...-.. .......+... ++..+++++.+ ..+.+||..+..
T Consensus 154 ~~~-----~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~ 210 (289)
T cd00200 154 SQD-----GTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGK 210 (289)
T ss_pred cCC-----CcEEEEEccccccceeEec-CccccceEEECCCcCEEEEecCC-----CcEEEEECCCCc
Confidence 423 2678888875432111111 11112222222 44355555543 458899987643
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.40 E-value=1.1 Score=45.72 Aligned_cols=209 Identities=18% Similarity=0.174 Sum_probs=114.9
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
++.+|..--. ...++++++.++.-....... ..+++.. ++.+|+..... ..++|+.+++++.
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~-------~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGG-------IAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTC-------EEEEETTTTEEEE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCc-------eEEEecCCCcEEE
Confidence 6777776532 357999999998866543222 3444444 78888877532 5677999999987
Q ss_pred CCCCC-----CCCcccEEEEECCEEEEEccCCCCc-cc--ceEEEEeCCCccEEEcc-cccccccceEEEEE-C-CEEEE
Q 005735 476 RPSLN-----GTKGSLAGATIDNKIFAIGGGNGLE-CF--SDVEMLDLDIGKWIRTR-SMLQKRFALAAAEL-N-GVLYA 544 (680)
Q Consensus 476 l~~lp-----~~r~~~a~~v~~gkIyV~GG~~~~~-~~--~~ve~yD~~t~~W~~i~-~~p~~r~~~s~~~~-~-g~Lyv 544 (680)
+...+ ..+.+-.++--+|.||+-.-..... .. ..++++++. ++...+. .+.. ...++.. + ..||+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEECCcchheee
Confidence 76553 2223333344478888863322111 11 568899999 6554442 2221 1233333 3 45777
Q ss_pred EcCCCCCCcCceeEEEeCCCCc--EEE---eccCCCCC-ceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 545 TGGYDGNEYMNSAERFDPREHY--WTK---IANMNRRR-GCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~--W~~---v~~~p~~r-~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.- .....+++|++.... +.. +..++... ..-.+++- ++.||+..-. ...|++||++...-..+
T Consensus 151 ~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 151 AD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREI 220 (246)
T ss_dssp EE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEE
T ss_pred cc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEE
Confidence 53 233569999886433 332 22333332 22234433 6889887421 35799999996655555
Q ss_pred CCCCCCccceEEEEE----CCEEEEE
Q 005735 618 EPMKLSRGYLGAAVV----KEAIYVI 639 (680)
Q Consensus 618 ~~lp~~R~~~s~v~~----~~~lyV~ 639 (680)
. +|.+ ..+.+.+ .++|||.
T Consensus 221 ~-~p~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 221 E-LPVP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp E--SSS--SEEEEEEESTTSSEEEEE
T ss_pred c-CCCC--CEEEEEEECCCCCEEEEE
Confidence 3 4433 2333333 2456664
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.39 E-value=0.12 Score=56.11 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=80.0
Q ss_pred ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCc-----eeEE--EeC-
Q 005735 491 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMN-----SAER--FDP- 562 (680)
Q Consensus 491 ~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~-----~v~~--yD~- 562 (680)
.+++|+.++.. ....+||.++..-...|.+..+.....++.++++||++.......... .++. |++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 48899998654 336799999999888888887777778888899999998754321111 3333 442
Q ss_pred -------CCCcEEEeccCCCCCc-------eeEEEEE-CCEEEE-EeccCCCCCCCeEEEEeCCCCcEEEcCCC
Q 005735 563 -------REHYWTKIANMNRRRG-------CHSLAVL-NGKLYA-LGGFDGSAMVPSIEVYDPRLGSWMSGEPM 620 (680)
Q Consensus 563 -------~t~~W~~v~~~p~~r~-------~~s~v~~-~~~Iyv-iGG~~~~~~~~~v~~yD~~t~~W~~v~~l 620 (680)
..-.|+.+++.|.... ..+-+++ |..|+| .-|.. ...+.||+.+.+|+.++..
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccce
Confidence 2236888876553222 2334555 667888 43321 2379999999999999753
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.33 E-value=0.39 Score=52.78 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=112.1
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCe-EEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDV-IKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~-W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
.+-.+|+++.+|+..| .+-+||..++. .+.+-.-..+-...-....++.+++.|+-+. .+-.+|..+..
T Consensus 75 ~fR~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~-----v~k~~d~s~a~ 144 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESG-----HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK-----VVKYWDLSTAY 144 (487)
T ss_pred EeecCCeEEEccCCcC-----cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc-----eEEEEEcCCcE
Confidence 3444899999998754 47788844321 1111111111111122335889999988552 23334444433
Q ss_pred EE-EC-CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc-cEEEcccccccccceEEEEE-C-CEEEEEcC
Q 005735 473 WT-SR-PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG-KWIRTRSMLQKRFALAAAEL-N-GVLYATGG 547 (680)
Q Consensus 473 W~-~l-~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i~~~p~~r~~~s~~~~-~-g~Lyv~GG 547 (680)
-+ .+ .....-|+ .+....++.|++-||+++. +-.||..+. .|..--+-..|.. .++.+ + ..|...||
T Consensus 145 v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~elnhg~pVe--~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 145 VQAELSGHTDYVRC-GDISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVVELNHGCPVE--SVLALPSGSLIASAGG 216 (487)
T ss_pred EEEEecCCcceeEe-eccccCCCeEEEecCCCce-----EEEEEeccCCceeEEecCCCcee--eEEEcCCCCEEEEcCC
Confidence 21 11 11111121 2233346779999998865 446777766 5543222111111 12222 3 34444555
Q ss_pred CCCCCcCceeEEEeCCCCcEEEeccCC-CCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCcc
Q 005735 548 YDGNEYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG 625 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~~v~~~p-~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~ 625 (680)
+.+-+||+.++. +.+..+. .....-+++.. ++.-++.||.++ .|-+|| +..|+.+-.+..+-.
T Consensus 217 -------n~vkVWDl~~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~~Kvv~s~~~~~p 281 (487)
T KOG0310|consen 217 -------NSVKVWDLTTGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTNYKVVHSWKYPGP 281 (487)
T ss_pred -------CeEEEEEecCCc-eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccceEEEEeeecccc
Confidence 467888886543 2222222 22222222222 445666777664 377899 566888877766655
Q ss_pred ceEEEEE-CCEEEEEecccC
Q 005735 626 YLGAAVV-KEAIYVIGGVKN 644 (680)
Q Consensus 626 ~~s~v~~-~~~lyV~GG~~~ 644 (680)
-.++++. ++.-.++|+.++
T Consensus 282 vLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eeeEEecCCCceEEEecccc
Confidence 5555555 678888887654
No 66
>PRK00809 hypothetical protein; Provisional
Probab=96.31 E-value=0.017 Score=54.54 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=74.2
Q ss_pred EEeecCCChHHHhhhhcccCCCcCccchhccCCCCcEEEEecC-------CCeEeeEEEeccCCCccccCCCCC---CCC
Q 005735 22 IFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYT-------DRKLHGIFEAASPGMMNINPYGWT---DGS 91 (680)
Q Consensus 22 if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~-------~~~l~g~~~a~s~g~~~~~~~a~~---~~~ 91 (680)
|++-|.+....|..+.++|++.++..+++.+|||.-||-|--. .....||.|-+++. ..||.+|- ...
T Consensus 5 i~~~~~~~~~~~~~~gv~g~~~~~rn~lr~Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~--y~D~t~~~p~~~~~ 82 (144)
T PRK00809 5 LCITNEDNWEVIKDKNVWGVPERYKNTIEKVKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEW--YEDSTPIFPAEPVR 82 (144)
T ss_pred EEecCHHHHHHHHhCCEeecchhhhhHHhhCCCCCEEEEEECCccCCCCCCceEEEEEEEecCc--ccCCccCCCccccC
Confidence 4555778888999999999999999999999999999999887 58899999999876 44666653 122
Q ss_pred CCCCCCceEEEEEeeeec-CCCCCcchhHH
Q 005735 92 ERTSYPAQVQIRVRMQCQ-PLNEEKFKPII 120 (680)
Q Consensus 92 ~~~~~paqv~~~~~~~~~-pl~e~~~~~~i 120 (680)
...+||..|+++...... |++=.++.+.+
T Consensus 83 ~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L 112 (144)
T PRK00809 83 PKEIYPYRVKLKPVKIFEEPIDFKPLIPKL 112 (144)
T ss_pred CCCCceEEEEEEEeeecCCcccHHHHHhhh
Confidence 357899999998764322 35544554444
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.17 E-value=1.6 Score=43.39 Aligned_cols=220 Identities=17% Similarity=0.186 Sum_probs=97.6
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCc-cceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSAR-SYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R-~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.....+++..+++|+.+ ..+.+||..++..... +.... ...++... ++.+++.|+.+ ..+.+||..
T Consensus 56 ~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~ 123 (289)
T cd00200 56 DVAASADGTYLASGSSD-----KTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVE 123 (289)
T ss_pred EEEECCCCCEEEEEcCC-----CeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECC
Confidence 34444455566666653 3578888876432111 11111 12222222 34666666533 358888887
Q ss_pred CCcEEECCCCCCCCccc-EEEEEC-CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEc
Q 005735 470 NDEWTSRPSLNGTKGSL-AGATID-NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATG 546 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~-a~~v~~-gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~G 546 (680)
+.+-... +....... +..... +.+++.|+.+ ..+.+||+.+.+-...-..... ...++... ++..++++
T Consensus 124 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 124 TGKCLTT--LRGHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSS 195 (289)
T ss_pred CcEEEEE--eccCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEe
Confidence 5443221 11111112 222223 4555544323 3577888875432111111111 11122222 34355555
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCcc
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG 625 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~ 625 (680)
+.+ ..+.+||..+......-. ........+... ++.+++.++.+ ..+.+||..+..- +..+.....
T Consensus 196 ~~~-----~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~i~~~~~~~~--~~~~~~~~~ 262 (289)
T cd00200 196 SSD-----GTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSED-----GTIRVWDLRTGEC--VQTLSGHTN 262 (289)
T ss_pred cCC-----CcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCC-----CcEEEEEcCCcee--EEEccccCC
Confidence 543 368889987643322211 122222333333 34555555423 3578888875332 222222111
Q ss_pred -ceEEEEE-CCEEEEEecccC
Q 005735 626 -YLGAAVV-KEAIYVIGGVKN 644 (680)
Q Consensus 626 -~~s~v~~-~~~lyV~GG~~~ 644 (680)
..+++.. ++..++.||.++
T Consensus 263 ~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 263 SVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred cEEEEEECCCCCEEEEecCCC
Confidence 2222222 346777776554
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=0.26 Score=53.83 Aligned_cols=196 Identities=20% Similarity=0.242 Sum_probs=109.9
Q ss_pred ccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCE-EEEEecCCCCCccceEEE
Q 005735 389 SSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGE-LYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~-IyV~GG~~~~~~~~~v~v 465 (680)
...++.+-+.-.+++.+|+++.. .++..|-.+|. .+.++...++.-..+.+ +|+ ..+++|.. .-+|.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ys 284 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYS 284 (514)
T ss_pred CceEEEecCCCceEEEecCCCcE---EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEE
Confidence 33456666688899999997543 36667777766 34444433332222222 444 77777754 34789
Q ss_pred EeCCCCcEEECCCCCCC--CcccE-EEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEE
Q 005735 466 YSPANDEWTSRPSLNGT--KGSLA-GATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVL 542 (680)
Q Consensus 466 yD~~t~~W~~l~~lp~~--r~~~a-~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~L 542 (680)
||..+.+-.++.++-.. +.... .+..++.++++-|.++. +..+...|+.|...-.++......+....+..|
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce-----EEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 99999988887664321 22222 23446667777775543 556667777775443444333333333445678
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEE-EECCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLA-VLNGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v-~~~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
|+.||.. .||+||+..+.....-.---....-+.| ..++..+..|- +. .-|-+||.+
T Consensus 360 ~~~~~~G------eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~----GiVNIYd~~ 417 (514)
T KOG2055|consen 360 LASGGTG------EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DS----GIVNIYDGN 417 (514)
T ss_pred EEEcCCc------eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-Cc----ceEEEeccc
Confidence 8888754 7999999887533321111111222222 34666555543 21 235567643
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.99 E-value=0.39 Score=52.49 Aligned_cols=194 Identities=13% Similarity=0.177 Sum_probs=108.1
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCCCccEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
...+.+.+|.++. -.++..|-.+|. .+.++...+.-...+.+ +|. ..+.+|. ..-++.||+.+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 5678888887753 346666777775 44454433333222222 454 5566553 345779999999988
Q ss_pred Eccccc---ccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCC
Q 005735 522 RTRSML---QKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS 598 (680)
Q Consensus 522 ~i~~~p---~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~ 598 (680)
.+.++- ..-....-+..++.+.++.|.++ -|..+-..++.|..--.++-.....+....+..|++.||+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 876543 22233334555677777777665 4566666677765433333222222222334567888774
Q ss_pred CCCCeEEEEeCCCC----cEEEcCCCCCCccceEEE-EECCEEEEEecccCCCcccceEEEEcCCCCeEecccCCC
Q 005735 599 AMVPSIEVYDPRLG----SWMSGEPMKLSRGYLGAA-VVKEAIYVIGGVKNGSEIVDTVERFKEGQGWEEINSRAI 669 (680)
Q Consensus 599 ~~~~~v~~yD~~t~----~W~~v~~lp~~R~~~s~v-~~~~~lyV~GG~~~~~~~~~~ve~y~~~~~W~~v~~~p~ 669 (680)
..||++|+.++ +|..-+.. .+.+.| ..++..+..| .+.+ -|-+|+-.....-..|.|+
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~G-S~~G-----iVNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATG-SDSG-----IVNIYDGNSCFASTNPKPI 428 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEec-cCcc-----eEEEeccchhhccCCCCch
Confidence 46999999887 34332222 222222 3466654444 4332 4667776544444444443
No 70
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.57 E-value=3.3 Score=42.48 Aligned_cols=183 Identities=14% Similarity=0.069 Sum_probs=88.0
Q ss_pred EEEEEecCCCCcccCeEEEEeCCCCeEEEc-CCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEE-
Q 005735 400 SIYLVGGCDGDSWLSTLELYLPSCDVIKTL-KPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTS- 475 (680)
Q Consensus 400 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l-~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~- 475 (680)
.+|+.++.+ ..+.+||+.++..... .....++ +++.. +..+|+.++.. ..+.+||..+.+...
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~ 68 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGT 68 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEe
Confidence 466666644 3688889887654332 2111122 22222 34577776543 468899998876643
Q ss_pred CCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE-ECCEEEEEcCCCCCC
Q 005735 476 RPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE-LNGVLYATGGYDGNE 552 (680)
Q Consensus 476 l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~-~~g~Lyv~GG~~~~~ 552 (680)
++....+ ...+.. ++ .+|+.++.+ ..+..||+.+.+- +..++.......++. -++.+++++..+.
T Consensus 69 ~~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-- 136 (300)
T TIGR03866 69 LPSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT-- 136 (300)
T ss_pred ccCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC--
Confidence 2221111 122222 34 466665422 3578899987642 211111111122222 2566666654332
Q ss_pred cCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 553 YMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 553 ~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
..+..||..+..-....... .+..+.....+++.+++++.. -..+.+||+++...
T Consensus 137 --~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 --NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRKV 191 (300)
T ss_pred --CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCC----CCEEEEEEcCccee
Confidence 24566787665432211111 111122222355544444322 24588999887543
No 71
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.44 E-value=6 Score=44.61 Aligned_cols=235 Identities=10% Similarity=0.019 Sum_probs=114.4
Q ss_pred cCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEEC
Q 005735 413 LSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATID 492 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~ 492 (680)
...++..|.....-+.+......-... ...-+++-+++...... ...++++|..+++-+.+...+..... ....-+
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p-~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPD 272 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSP-AWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGA-PRFSPD 272 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCc-eECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCC-eeECCC
Confidence 456777776655444443221111111 11124433333222211 24799999998877766554432221 122224
Q ss_pred CE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 493 NK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 493 gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
|+ |++....++ ..+++.+|+.+++.+.+..-...-..+ ...-++ .|++.....+ ...++++|..+++++.+
T Consensus 273 G~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 273 GKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEP-SWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEE
Confidence 54 555433222 257899999999887765422111111 112244 4555433222 24799999999998887
Q ss_pred ccCCCCCceeE-EEEECC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccCCCcc
Q 005735 571 ANMNRRRGCHS-LAVLNG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEI 648 (680)
Q Consensus 571 ~~~p~~r~~~s-~v~~~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~ 648 (680)
.... ..... ...-++ .|++.+. .+. ...++.+|+.++....+..-.... ..+ ..-+++.+++......
T Consensus 346 t~~g--~~~~~~~~SpDG~~l~~~~~-~~g--~~~I~~~dl~~g~~~~lt~~~~d~-~ps-~spdG~~I~~~~~~~g--- 415 (448)
T PRK04792 346 TFEG--EQNLGGSITPDGRSMIMVNR-TNG--KFNIARQDLETGAMQVLTSTRLDE-SPS-VAPNGTMVIYSTTYQG--- 415 (448)
T ss_pred ecCC--CCCcCeeECCCCCEEEEEEe-cCC--ceEEEEEECCCCCeEEccCCCCCC-Cce-ECCCCCEEEEEEecCC---
Confidence 4211 11111 222244 4554432 221 246899999998887764322111 111 1224544444333222
Q ss_pred cceEEEEcCCCCeEecccCC
Q 005735 649 VDTVERFKEGQGWEEINSRA 668 (680)
Q Consensus 649 ~~~ve~y~~~~~W~~v~~~p 668 (680)
...+++++..+.+...-+.+
T Consensus 416 ~~~l~~~~~~G~~~~~l~~~ 435 (448)
T PRK04792 416 KQVLAAVSIDGRFKARLPAG 435 (448)
T ss_pred ceEEEEEECCCCceEECcCC
Confidence 13466777666665543333
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.11 E-value=4.7 Score=48.88 Aligned_cols=187 Identities=12% Similarity=0.218 Sum_probs=90.7
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe--EEEc--C--CCCCCccceEEEEE---CCEEEEEecCCCCCccce
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV--IKTL--K--PMSSARSYASAAML---NGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l--~--~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~ 462 (680)
+..+.+++.+++.||.++ .+.+||..+.. .... + .+. .+.....+.+ .+.+++.|+.+ ..
T Consensus 488 ~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D-----g~ 556 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE-----GV 556 (793)
T ss_pred EEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC-----Ce
Confidence 355666788888888653 45666654311 1100 0 000 0111111122 34555666654 35
Q ss_pred EEEEeCCCCcEEECCCCCCCCc-ccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-
Q 005735 463 VESYSPANDEWTSRPSLNGTKG-SLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL- 538 (680)
Q Consensus 463 v~vyD~~t~~W~~l~~lp~~r~-~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~- 538 (680)
+.+||..+++... .+..-.. -.+++.. ++.+++.||.++ .+.+||+.++.-.. .+... ....++.+
T Consensus 557 v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~--~~~~~-~~v~~v~~~ 626 (793)
T PLN00181 557 VQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIG--TIKTK-ANICCVQFP 626 (793)
T ss_pred EEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEE--EEecC-CCeEEEEEe
Confidence 7888887654322 1111111 1222222 466777777653 46788887654211 11111 11112222
Q ss_pred --CCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 539 --NGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 539 --~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
++.++++|+.++ .+.+||..+.. ...+.. .......+...++..++.|+.++ .+.+||+..
T Consensus 627 ~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 627 SESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CCCCCEEEEEeCCC-----eEEEEECCCCCccceEecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeCCC
Confidence 477788887664 68899987643 222211 11112223334566666776543 477888764
No 73
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.03 E-value=6.8 Score=43.82 Aligned_cols=211 Identities=9% Similarity=-0.046 Sum_probs=104.2
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
....+++.-+++....+. ...++++|+.++..+.+...+..-...+..-.+.+|++....++ ..++|++|..+..
T Consensus 207 p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~ 281 (435)
T PRK05137 207 PRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGT 281 (435)
T ss_pred eEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---CceEEEEECCCCc
Confidence 444556655555443221 26799999999988877654432222222112345554433322 2468999999888
Q ss_pred EEECCCCCCCCcccEEEEECCEEEEEcc-CCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCC
Q 005735 473 WTSRPSLNGTKGSLAGATIDNKIFAIGG-GNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDG 550 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~~gkIyV~GG-~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~ 550 (680)
.+.+...+.... .....-+++-+++.. ..+ ...++.+|..++..+.+..-.. ........-+| .|++.....+
T Consensus 282 ~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 282 TTRLTDSPAIDT-SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred eEEccCCCCccC-ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcCCC
Confidence 777654332111 122223555333332 221 2468899988877666543211 11111122244 4544432111
Q ss_pred CCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccC-CCCCCCeEEEEeCCCCcEEEcC
Q 005735 551 NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFD-GSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 551 ~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~-~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
...++++|+.++..+.+.... ........-+++.+++-... +......++.+|+....-..+.
T Consensus 357 ---~~~i~~~d~~~~~~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 357 ---QFSIGVMKPDGSGERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ---ceEEEEEECCCCceEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 236889998776665553321 11111122245444443322 2111246888888766555543
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.93 E-value=1.3 Score=48.80 Aligned_cols=188 Identities=18% Similarity=0.233 Sum_probs=97.3
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCcE-EECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEE-
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPANDEW-TSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWI- 521 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W-~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~- 521 (680)
-+|+|+.+|+..+ .|-+||..+..- +.+..-..|-..---...++.+++.|+-+.. +-.+|..+..=+
T Consensus 78 ~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v-----~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 78 SDGRLLAAGDESG-----HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV-----VKYWDLSTAYVQA 147 (487)
T ss_pred cCCeEEEccCCcC-----cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCce-----EEEEEcCCcEEEE
Confidence 3899999998765 478888444110 0000000111111123358889999875422 334555544421
Q ss_pred EcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-C-CEEEEEeccCCCC
Q 005735 522 RTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-N-GKLYALGGFDGSA 599 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~-~~IyviGG~~~~~ 599 (680)
.+..-.....+.++...++.|++.||+++ .|-.||+.+.+ ..+-.+...--.-.++.+ + ..|...||
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG----- 216 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG----- 216 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-----
Confidence 11111122223334445889999999997 57788888774 333333322222233333 3 45555666
Q ss_pred CCCeEEEEeCCCCcEEEcCCCCCCcc-----ceEEEEE-CCEEEEEecccCCCcccceEEEEcCC-----CCeEecc
Q 005735 600 MVPSIEVYDPRLGSWMSGEPMKLSRG-----YLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-----QGWEEIN 665 (680)
Q Consensus 600 ~~~~v~~yD~~t~~W~~v~~lp~~R~-----~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~-----~~W~~v~ 665 (680)
+.+-++|+.++. .+...+. -.+++.. +++-++-||.+.. |-+|+.. .+|+-.+
T Consensus 217 --n~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~------VKVfd~t~~Kvv~s~~~~~ 280 (487)
T KOG0310|consen 217 --NSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH------VKVFDTTNYKVVHSWKYPG 280 (487)
T ss_pred --CeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEeecccccc------eEEEEccceEEEEeeeccc
Confidence 456777765432 2222222 1222222 5577888888764 7788843 4565433
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.87 E-value=4 Score=41.60 Aligned_cols=185 Identities=19% Similarity=0.175 Sum_probs=102.2
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
++.||+..-. ...++++|+.+.+-..+.. +. ..+++.. ++++|+... ..+..+|+.+++++.
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 5777776432 2479999999987655322 22 2333443 688888754 234577999999988
Q ss_pred ccccc-----ccccceEEEEECCEEEEEcCCCCC-CcC--ceeEEEeCCCCcEEEec-cCCCCCceeEEEEE-CC-EEEE
Q 005735 523 TRSML-----QKRFALAAAELNGVLYATGGYDGN-EYM--NSAERFDPREHYWTKIA-NMNRRRGCHSLAVL-NG-KLYA 591 (680)
Q Consensus 523 i~~~p-----~~r~~~s~~~~~g~Lyv~GG~~~~-~~~--~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~~-~~-~Iyv 591 (680)
+...+ ..+..-.++--+|.||+-.-.... ... ..++++++. .+.+.+. .+.. ...++.. ++ .||+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEECCcchheee
Confidence 76553 122222223337888886321111 111 579999998 6666553 2222 2344444 34 5777
Q ss_pred EeccCCCCCCCeEEEEeCCCCc--EEE---cCCCCCCc-cceEEEEE-CCEEEEEecccCCCcccceEEEEcCCCC
Q 005735 592 LGGFDGSAMVPSIEVYDPRLGS--WMS---GEPMKLSR-GYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEGQG 660 (680)
Q Consensus 592 iGG~~~~~~~~~v~~yD~~t~~--W~~---v~~lp~~R-~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~~~ 660 (680)
..- ....|+.|++.... +.. +..++... ..-++++- +++|||..-. . ..|.+|+|.++
T Consensus 151 ~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-~-----~~I~~~~p~G~ 215 (246)
T PF08450_consen 151 ADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-G-----GRIVVFDPDGK 215 (246)
T ss_dssp EET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-T-----TEEEEEETTSC
T ss_pred ccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-C-----CEEEEECCCcc
Confidence 532 34568999886432 332 22233322 22344443 6889997431 1 35899998844
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.83 E-value=5.4 Score=40.84 Aligned_cols=241 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred EEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEE-cCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 393 LHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKT-LKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 393 ~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~-l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
..+.+++ .+|+.++.+ ..+.+||..+++... ++....+ ..++.. ++.+|+.++.+ ..+.+||.
T Consensus 36 l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred eEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 4455555 456666532 458889998876543 2221111 222222 44566665433 35888998
Q ss_pred CCCcEEECCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcC
Q 005735 469 ANDEWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG 547 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG 547 (680)
.+.+-. ..++......+.+. -++++++++..+. ..+..||..+.+-....... .+.......-+++.+++++
T Consensus 103 ~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 103 ETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSS 175 (300)
T ss_pred CCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEc
Confidence 875421 11111111122222 3666666654321 23556787765432211111 1111122222555444443
Q ss_pred CCCCCcCceeEEEeCCCCcEEE-ec----cCC-CCCceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 548 YDGNEYMNSAERFDPREHYWTK-IA----NMN-RRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~~-v~----~~p-~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
... ..+.+||..+.+... +. ..+ .......++.. ++ .+|+..+. .+.+.+||.++ |+.+..
T Consensus 176 ~~~----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-----~~~i~v~d~~~--~~~~~~ 244 (300)
T TIGR03866 176 EIG----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-----ANRVAVVDAKT--YEVLDY 244 (300)
T ss_pred CCC----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-----CCeEEEEECCC--CcEEEE
Confidence 211 368889988765322 21 111 11111222222 34 45554432 24588999865 333322
Q ss_pred CCCCccceEEEEE-CCEEEEEe-cccCCCcccceEEEEcCCCCeEecccCCCCC
Q 005735 620 MKLSRGYLGAAVV-KEAIYVIG-GVKNGSEIVDTVERFKEGQGWEEINSRAIGK 671 (680)
Q Consensus 620 lp~~R~~~s~v~~-~~~lyV~G-G~~~~~~~~~~ve~y~~~~~W~~v~~~p~~~ 671 (680)
....+...+++.. +++.++.+ +.++ ++.+|+.. +++.+..+++++
T Consensus 245 ~~~~~~~~~~~~~~~g~~l~~~~~~~~------~i~v~d~~-~~~~~~~~~~~~ 291 (300)
T TIGR03866 245 LLVGQRVWQLAFTPDEKYLLTTNGVSN------DVSVIDVA-ALKVIKSIKVGR 291 (300)
T ss_pred EEeCCCcceEEECCCCCEEEEEcCCCC------eEEEEECC-CCcEEEEEEccc
Confidence 2222223333332 44444443 3332 47888874 444444445553
No 77
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.58 E-value=7.4 Score=43.02 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=133.6
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceE-EEEE-CCEEEEEecCCCCC------ccceE
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYAS-AAML-NGELYIFGGGDGNS------WHNTV 463 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s-~v~~-~~~IyV~GG~~~~~------~~~~v 463 (680)
...+.+++..++++=-.++.-...++++|..+++...- .+.. ..++ ++-. +++.+++...+... ....+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 45666778888877544445556799999999854321 1122 2222 3333 44555555544322 25678
Q ss_pred EEEeCCCCcEE--ECCCCCCCCc-c-cEEEEECCEEEEEccCCCCcccceEEEEeCCCc-----cEEEcccccccccceE
Q 005735 464 ESYSPANDEWT--SRPSLNGTKG-S-LAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG-----KWIRTRSMLQKRFALA 534 (680)
Q Consensus 464 ~vyD~~t~~W~--~l~~lp~~r~-~-~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~-----~W~~i~~~p~~r~~~s 534 (680)
+.+...+..-. .+-..+.... . .....-+++..++.-..+.. .+.++..|.... .|..+.+-... ....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~ 282 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYY 282 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEE
Confidence 88887776432 2212222222 2 22233355644443322222 478999999875 78777542222 2223
Q ss_pred EEEECCEEEEEcCCCCCCcCceeEEEeCCCCc---EE-EeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 535 AAELNGVLYATGGYDGNEYMNSAERFDPREHY---WT-KIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 535 ~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~---W~-~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
+...++.+|+....+ .....+..+++.+.. |. .+.+-......-.+...++.|++.-=.++ ...+.+||+.
T Consensus 283 v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT
T ss_pred EEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECC
Confidence 344589999986532 333578888887654 66 44433333344455566888887754433 4678999998
Q ss_pred -CCcEEEcCCCCCCccceEEEEE---CCE-EEEEecccCCCcccceEEEEcCC-CCeEe
Q 005735 611 -LGSWMSGEPMKLSRGYLGAAVV---KEA-IYVIGGVKNGSEIVDTVERFKEG-QGWEE 663 (680)
Q Consensus 611 -t~~W~~v~~lp~~R~~~s~v~~---~~~-lyV~GG~~~~~~~~~~ve~y~~~-~~W~~ 663 (680)
+..-..+ ++|.. +....... .+. .|.+.+.... .+++.|+.. ++.+.
T Consensus 358 ~~~~~~~~-~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P----~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 358 DGKESREI-PLPEA-GSVSGVSGDFDSDELRFSYSSFTTP----PTVYRYDLATGELTL 410 (414)
T ss_dssp -TEEEEEE-ESSSS-SEEEEEES-TT-SEEEEEEEETTEE----EEEEEEETTTTCEEE
T ss_pred CCcEEeee-cCCcc-eEEeccCCCCCCCEEEEEEeCCCCC----CEEEEEECCCCCEEE
Confidence 3222223 23322 11111111 233 4444454433 578888877 55444
No 78
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.48 E-value=1.4 Score=46.40 Aligned_cols=107 Identities=14% Similarity=0.199 Sum_probs=66.3
Q ss_pred ceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCCC-cCceeEEEeCCCCcEEEeccC-----CCCCcee
Q 005735 508 SDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNE-YMNSAERFDPREHYWTKIANM-----NRRRGCH 580 (680)
Q Consensus 508 ~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~-~~~~v~~yD~~t~~W~~v~~~-----p~~r~~~ 580 (680)
..+..||+.+.+|.....-.... -..+... +++||+.|-..-.. ....+..||..+.+|..++.. |.+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 56899999999999876432221 2233333 67788877654333 455788999999999998762 3332222
Q ss_pred EEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 581 SLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 581 s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
..... ...+++.|... .-..-+..|| ..+|..+..
T Consensus 95 ~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 22222 34677777642 1233466675 568998865
No 79
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.40 E-value=3.2 Score=42.97 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=103.0
Q ss_pred CCEEEEEecCCCCCccceEEEEeCC-----CCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPA-----NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~-----t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
.+++|++.|..+. .++.|... .+.+...-.||.+-.+.+.++.+|.+|.--. ..+.+..||+.+.+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 4678888876643 45555332 2333333456666777888889999887532 45789999999986
Q ss_pred EEEccccccccc------------ceEEEEECCEEEEEcCCCCCCcCceeEEEeCCC----CcEEEeccCCCCCceeEEE
Q 005735 520 WIRTRSMLQKRF------------ALAAAELNGVLYATGGYDGNEYMNSAERFDPRE----HYWTKIANMNRRRGCHSLA 583 (680)
Q Consensus 520 W~~i~~~p~~r~------------~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t----~~W~~v~~~p~~r~~~s~v 583 (680)
=.....+|...+ ..-.++-...|+++=......-.-.+-..|+.+ .+|.. ..+.+... .+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhc-cee
Confidence 442222332211 122334455677774433222112345567665 34653 23332222 344
Q ss_pred EECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC-CCCCCccceEEEEE---CCEEEEEe
Q 005735 584 VLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE-PMKLSRGYLGAAVV---KEAIYVIG 640 (680)
Q Consensus 584 ~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~-~lp~~R~~~s~v~~---~~~lyV~G 640 (680)
++-|.||++...+... ..-.+.||+.+++=..+. +++.+-...+++.+ +.+||+.-
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 4567899987765432 233589999987666443 23333344555555 56788874
No 80
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.37 E-value=10 Score=42.10 Aligned_cols=180 Identities=11% Similarity=0.045 Sum_probs=92.9
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 539 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~ 539 (680)
..++++|..+++-+.+...+..-. .....-+|+ |++....++ ..+++++|+.++....+..-+..-..+. ..-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~-~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPF-WGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeE-ECCC
Confidence 469999999988877755432111 111222454 443322222 2578999999998877653221111111 1224
Q ss_pred -CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEE-EEC-CEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 540 -GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLA-VLN-GKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 540 -g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v-~~~-~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
..|++.....+ ...++.+|..++.++.+.... ....... .-+ +.|++....++ ...++.+|+.++.++.
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRI 369 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEE
Confidence 35655432222 247899999888888774221 1111111 223 44555443222 2358999999988887
Q ss_pred cCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 617 GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 617 v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+....... .. ...-+++.+++.....+. ..+++.+..
T Consensus 370 lt~~~~~~-~p-~~spdg~~i~~~~~~~g~---~~l~~~~~~ 406 (430)
T PRK00178 370 LTDTSLDE-SP-SVAPNGTMLIYATRQQGR---GVLMLVSIN 406 (430)
T ss_pred ccCCCCCC-Cc-eECCCCCEEEEEEecCCc---eEEEEEECC
Confidence 75422111 11 122255655555443221 235555554
No 81
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.24 E-value=0.61 Score=49.11 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=72.7
Q ss_pred EEEecCC--CCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCC-CCccceEEEEeCCCCcEEECC
Q 005735 402 YLVGGCD--GDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDG-NSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 402 yv~GG~~--~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~-~~~~~~v~vyD~~t~~W~~l~ 477 (680)
||-|-+. +.-....+..||..+.+|..+..--... -.++... +++||+.|-..- ......+-.||..+.+|..++
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 4444444 3335788999999999999986552222 2333333 778888776552 224566889999999998876
Q ss_pred C-----CCCCCcccEEEEEC-CEEEEEccCCCCcccceEEEEeCCCccEEEccc
Q 005735 478 S-----LNGTKGSLAGATID-NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS 525 (680)
Q Consensus 478 ~-----lp~~r~~~a~~v~~-gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~ 525 (680)
. +|.+.........+ ..+++.|.. ..-..-+..| +..+|..+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 6 23333222222223 357777664 2222345566 5668988765
No 82
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.17 E-value=9.6 Score=41.91 Aligned_cols=166 Identities=12% Similarity=0.000 Sum_probs=87.5
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
+.+++..+++....+. ...++++|..++....+..........+..--+..|++.....+ ...++.+|..++..+
T Consensus 197 ~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 197 WSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLT 271 (417)
T ss_pred CCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC---CccEEEEECCCCCEE
Confidence 4445655556554322 25799999998876666544322222111111345665543322 246899999988877
Q ss_pred ECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCc
Q 005735 475 SRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY 553 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~ 553 (680)
.+.......... ...-+++ |++.....+ ...++.+|+.++.+..+..-....... ...-+++.+++..... -
T Consensus 272 ~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~~~~~~-~~spdg~~i~~~~~~~--~ 344 (417)
T TIGR02800 272 RLTNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGGYNASP-SWSPDGDLIAFVHREG--G 344 (417)
T ss_pred ECCCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCCCccCe-EECCCCCEEEEEEccC--C
Confidence 765433211111 1122554 444332222 247889999988877654322111111 1222555555544332 1
Q ss_pred CceeEEEeCCCCcEEEecc
Q 005735 554 MNSAERFDPREHYWTKIAN 572 (680)
Q Consensus 554 ~~~v~~yD~~t~~W~~v~~ 572 (680)
...++.+|+.++.++.+..
T Consensus 345 ~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ceEEEEEeCCCCCeEEccC
Confidence 2478999998877776653
No 83
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.05 E-value=12 Score=41.60 Aligned_cols=200 Identities=9% Similarity=-0.011 Sum_probs=99.7
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcE
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW 473 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W 473 (680)
...+++.-+++....+ ....++++|..+++-+.+...+..-......--+.+|++.....+. ..++++|..+...
T Consensus 205 ~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~---~~Iy~~d~~~~~~ 279 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGN---PEIYVMDLASRQL 279 (430)
T ss_pred eECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCC---ceEEEEECCCCCe
Confidence 4444554444443322 2357999999998877775443211111111113455543322221 4799999999988
Q ss_pred EECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCC
Q 005735 474 TSRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGN 551 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~ 551 (680)
+.+..-+..-.. ....-+++ |++.....+ ...++.+|+.+++++.+..... ........- ++.|++....++
T Consensus 280 ~~lt~~~~~~~~-~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~~-~~~~~~~Spdg~~i~~~~~~~~- 353 (430)
T PRK00178 280 SRVTNHPAIDTE-PFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVGN-YNARPRLSADGKTLVMVHRQDG- 353 (430)
T ss_pred EEcccCCCCcCC-eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCC-
Confidence 877543221111 11222444 554432221 2478899999888876642211 111111112 345555543222
Q ss_pred CcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 552 EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 552 ~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
...++++|+.++.++.+...... ......-+++.+++....+. ...++..+..
T Consensus 354 --~~~l~~~dl~tg~~~~lt~~~~~--~~p~~spdg~~i~~~~~~~g--~~~l~~~~~~ 406 (430)
T PRK00178 354 --NFHVAAQDLQRGSVRILTDTSLD--ESPSVAPNGTMLIYATRQQG--RGVLMLVSIN 406 (430)
T ss_pred --ceEEEEEECCCCCEEEccCCCCC--CCceECCCCCEEEEEEecCC--ceEEEEEECC
Confidence 23689999999888877543211 11122235555554432221 2346666664
No 84
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.93 E-value=12 Score=41.14 Aligned_cols=229 Identities=13% Similarity=0.046 Sum_probs=111.1
Q ss_pred cCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEEC
Q 005735 413 LSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATID 492 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~ 492 (680)
...++..|.....-+.+...... .......-+++.+++....+. ...++++|..+++...+...+..... ....-+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~-~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREP-ILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGA-PAFSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCc-eecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccc-eEECCC
Confidence 45577777654433333221110 111111224444444443322 25789999998876666544322222 122225
Q ss_pred CE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 493 NK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 493 gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
++ |++....++ ...++.+|+.++....+........... ..-++ +|++.....+ ...++++|..+..++.+
T Consensus 245 g~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 245 GSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEPS-WSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRL 317 (417)
T ss_pred CCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCEE-ECCCCCEEEEEECCCC---CceEEEEECCCCCEEEe
Confidence 54 555433222 2568899999887776643221111111 11244 4554433222 23789999988888776
Q ss_pred ccCCCCCceeEEE-EECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccCCCccc
Q 005735 571 ANMNRRRGCHSLA-VLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIV 649 (680)
Q Consensus 571 ~~~p~~r~~~s~v-~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~ 649 (680)
.... ......+ .-+++.+++...++ ....++++|+.++.+..+..-.... ......+++.+++.....+.
T Consensus 318 ~~~~--~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~--~p~~spdg~~l~~~~~~~~~--- 388 (417)
T TIGR02800 318 TFRG--GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLTDTGLDE--SPSFAPNGRMILYATTRGGR--- 388 (417)
T ss_pred ecCC--CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEccCCCCCC--CceECCCCCEEEEEEeCCCc---
Confidence 4322 1122222 22555555544332 1346899999987777665322111 11122255545554443321
Q ss_pred ceEEEEcCCCCe
Q 005735 650 DTVERFKEGQGW 661 (680)
Q Consensus 650 ~~ve~y~~~~~W 661 (680)
..+++++.....
T Consensus 389 ~~l~~~~~~g~~ 400 (417)
T TIGR02800 389 GVLGLVSTDGRF 400 (417)
T ss_pred EEEEEEECCCce
Confidence 346666654333
No 85
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.90 E-value=12 Score=41.97 Aligned_cols=202 Identities=10% Similarity=-0.027 Sum_probs=100.3
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
..+++.-+++....+ ....++++|..+++...+...+.........--+.+|++.....+. .+++++|..++..+
T Consensus 211 wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~---~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 211 WSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGN---PEIYVMDLGSRQLT 285 (433)
T ss_pred CCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCC---ceEEEEECCCCCeE
Confidence 334554444444322 2356899999988877776543221111111114456554333322 47999999988876
Q ss_pred ECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCc
Q 005735 475 SRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY 553 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~ 553 (680)
.+..-..... .....-+|+ |++.....+ ...++.+|..+++++.+..-.......+...-+..|++..+.++
T Consensus 286 ~lt~~~~~~~-~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~--- 358 (433)
T PRK04922 286 RLTNHFGIDT-EPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG--- 358 (433)
T ss_pred ECccCCCCcc-ceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC---
Confidence 6643221111 112222555 443322222 24688899988887766421111111111112345555544221
Q ss_pred CceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 554 MNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 554 ~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
...++++|+.++..+.+..-... ......-+++.+++....+ ....++.+++...
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~~~~--~~p~~spdG~~i~~~s~~~--g~~~L~~~~~~g~ 413 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPGSLD--ESPSFAPNGSMVLYATREG--GRGVLAAVSTDGR 413 (433)
T ss_pred ceeEEEEECCCCCeEECCCCCCC--CCceECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence 13789999988888766532211 1112223555444443321 1245777777543
No 86
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.72 E-value=2.7 Score=44.96 Aligned_cols=123 Identities=19% Similarity=0.105 Sum_probs=81.6
Q ss_pred ceEEEEeCCCc-----cEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc-EEEeccCCCCCceeE
Q 005735 508 SDVEMLDLDIG-----KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY-WTKIANMNRRRGCHS 581 (680)
Q Consensus 508 ~~ve~yD~~t~-----~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~~~p~~r~~~s 581 (680)
..+..|+.... +++.+......-...+++.++++|++..| +.+.+|+..... +.....+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 56889998885 56666544444446677888999766655 478888888888 988887776667777
Q ss_pred EEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CCEEEEEecc
Q 005735 582 LAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGV 642 (680)
Q Consensus 582 ~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~ 642 (680)
+...++.|++-.-..+ -.++.|+....+-..++.-..++...++..+ ++. .++++-
T Consensus 135 l~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D 191 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGD 191 (321)
T ss_dssp EEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE
T ss_pred EeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEc
Confidence 7888887765433221 1345668766677778776677777777777 555 444443
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.67 E-value=14 Score=41.20 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=93.2
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 539 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~ 539 (680)
..++++|..+++.+.+...+.... .....-+| +|++....++ ..+++.+|+.++....+..-....... ...-+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spD 302 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPD 302 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECCC
Confidence 568999999888777765543211 11222245 4544432222 257899999988766554322111111 11224
Q ss_pred CE-EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEE-E-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 540 GV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV-L-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 540 g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~-~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
|+ |++.....+ ...++.+|..+++++.+.... ........ - +..|++..+.++ ...++++|+.++....
T Consensus 303 G~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 303 GKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVRT 374 (433)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeEE
Confidence 44 444432222 247899999888887775221 12222222 2 445555444221 2368999999888887
Q ss_pred cCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCCCC
Q 005735 617 GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQG 660 (680)
Q Consensus 617 v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~~~ 660 (680)
+..-.... .. ...-+++.+++.....+ ...++.++..++
T Consensus 375 Lt~~~~~~-~p-~~spdG~~i~~~s~~~g---~~~L~~~~~~g~ 413 (433)
T PRK04922 375 LTPGSLDE-SP-SFAPNGSMVLYATREGG---RGVLAAVSTDGR 413 (433)
T ss_pred CCCCCCCC-Cc-eECCCCCEEEEEEecCC---ceEEEEEECCCC
Confidence 65322111 11 11225555555543322 135666666543
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.53 E-value=16 Score=41.21 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=87.6
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcE
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW 473 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W 473 (680)
...+++.-+++.-... ....++++|..+++-+.+...+......+..--+..|++....++ ...++++|..+++.
T Consensus 224 ~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 224 AWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKAL 298 (448)
T ss_pred eECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCe
Confidence 4444555444433221 135799999998877766554322121111112445665544332 24799999999988
Q ss_pred EECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCCC
Q 005735 474 TSRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGN 551 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~~ 551 (680)
+.+..-...- ......-+++ |++.....+ ...++.+|+.++++..+..-...-... ...-+| .|++.+...+
T Consensus 299 ~~lt~~~~~~-~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~~~~~-~~SpDG~~l~~~~~~~g- 372 (448)
T PRK04792 299 TRITRHRAID-TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQNLGG-SITPDGRSMIMVNRTNG- 372 (448)
T ss_pred EECccCCCCc-cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCCCcCe-eECCCCCEEEEEEecCC-
Confidence 8775432111 1112223554 444332222 257899999999887764211111111 122244 4555432221
Q ss_pred CcCceeEEEeCCCCcEEEecc
Q 005735 552 EYMNSAERFDPREHYWTKIAN 572 (680)
Q Consensus 552 ~~~~~v~~yD~~t~~W~~v~~ 572 (680)
...++++|+.++..+.+..
T Consensus 373 --~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 --KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred --ceEEEEEECCCCCeEEccC
Confidence 2368899999988777643
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.45 E-value=12 Score=39.75 Aligned_cols=256 Identities=12% Similarity=0.066 Sum_probs=116.5
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCC-CCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPS-CDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~-t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
....+.++++.+.+|+.. ...+..|+.. ++.+..+...+.+...+.++.. +..||+.+-. .+.+.+|+
T Consensus 38 ~~l~~spd~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~ 108 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN-----ANCVSVSP 108 (330)
T ss_pred ccEEECCCCCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC-----CCeEEEEE
Confidence 345556565544444432 2446566654 4566655443333222333333 4457766432 24567777
Q ss_pred CCCCc--EEECCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCc-cEEEcc----cccccccceEEEEE
Q 005735 468 PANDE--WTSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIG-KWIRTR----SMLQKRFALAAAEL 538 (680)
Q Consensus 468 ~~t~~--W~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i~----~~p~~r~~~s~~~~ 538 (680)
..++. ......++.....|.++.. ++ .+|+..- ..+.+.+||+.+. ...... ..+.......++..
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 65321 1111222222223343333 44 4666532 2356889998763 221100 11111111223333
Q ss_pred --CCEEEEEcCCCCCCcCceeEEEeCC--CCcEEEe---ccCC----CCCceeEEEEE-CC-EEEEEeccCCCCCCCeEE
Q 005735 539 --NGVLYATGGYDGNEYMNSAERFDPR--EHYWTKI---ANMN----RRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIE 605 (680)
Q Consensus 539 --~g~Lyv~GG~~~~~~~~~v~~yD~~--t~~W~~v---~~~p----~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~ 605 (680)
+..+|+.... .+.+.+||.. +++.+.+ ..+| .++....++.. ++ .+|+... ..+.+.
T Consensus 184 pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~ 253 (330)
T PRK11028 184 PNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-----TASLIS 253 (330)
T ss_pred CCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-----CCCeEE
Confidence 3467776432 2467777765 4454433 3333 22322223322 34 5666532 134566
Q ss_pred EEeC--CCCcEEEcCCCCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcC--C-CCeEecccCCCCCcceeEE
Q 005735 606 VYDP--RLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE--G-QGWEEINSRAIGKRCFMSV 677 (680)
Q Consensus 606 ~yD~--~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~--~-~~W~~v~~~p~~~r~~~sa 677 (680)
+|+. ....++.+...+..-....++.. +..||+.+..+ +++.+|+. . +.+..+...++| ....|.
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~------~~v~v~~~~~~~g~l~~~~~~~~g-~~P~~~ 325 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS------HHISVYEIDGETGLLTELGRYAVG-QGPMWV 325 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC------CcEEEEEEcCCCCcEEEccccccC-CCceEE
Confidence 6665 44456555443322111122222 45666655322 24666643 3 568888777776 333333
No 90
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.11 E-value=19 Score=43.60 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=80.1
Q ss_pred eEEEEeCCCCeEEEcCCCCCC-ccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE
Q 005735 415 TLELYLPSCDVIKTLKPMSSA-RSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~mp~~-R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
.+.+||..++.... .+... ..-.+++.. ++.+++.||.++ .+.+||..+..-.. .+.. .....++.+
T Consensus 556 ~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~--~~~~-~~~v~~v~~ 625 (793)
T PLN00181 556 VVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIG--TIKT-KANICCVQF 625 (793)
T ss_pred eEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEE--EEec-CCCeEEEEE
Confidence 46667776554222 11111 112233332 467777787653 57888887643211 1111 111122222
Q ss_pred ---CCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC-
Q 005735 492 ---DNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH- 565 (680)
Q Consensus 492 ---~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~- 565 (680)
++.+++.|+.+ ..+.+||+.+.+ ...+..-.. ....+...++..++.|+.++ .+.+||....
T Consensus 626 ~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~~~ 693 (793)
T PLN00181 626 PSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDN-----TLKLWDLSMSI 693 (793)
T ss_pred eCCCCCEEEEEeCC-----CeEEEEECCCCCccceEecCCCC--CEEEEEEeCCCEEEEEECCC-----EEEEEeCCCCc
Confidence 46777777654 357788887643 111111001 11122233666667777654 5778887643
Q ss_pred ---cEEEeccCCCCCc--eeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 566 ---YWTKIANMNRRRG--CHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 566 ---~W~~v~~~p~~r~--~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
.|..+..+..... .......++.+++.|+.+ ..+.+|+...
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D-----~~v~iw~~~~ 739 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET-----NEVFVYHKAF 739 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC-----CEEEEEECCC
Confidence 2333322211111 111122256677777754 3467777654
No 91
>PRK13684 Ycf48-like protein; Provisional
Probab=92.76 E-value=17 Score=39.34 Aligned_cols=258 Identities=16% Similarity=0.140 Sum_probs=121.4
Q ss_pred ccCCCCChhhhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCC-CCCC-ccceEEEEECCEE
Q 005735 371 VQSPNNDTKECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP-MSSA-RSYASAAMLNGEL 448 (680)
Q Consensus 371 l~s~~~p~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~-mp~~-R~~~s~v~~~~~I 448 (680)
.+......|......+...+....+...+..+++|-.. .+++=.-.-.+|+.... ++.. ....++...++..
T Consensus 29 ~~~~~~~~W~~~~~~~~~~l~~v~F~d~~~g~avG~~G------~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~ 102 (334)
T PRK13684 29 VPMLSSSPWQVIDLPTEANLLDIAFTDPNHGWLVGSNR------TLLETNDGGETWEERSLDLPEENFRLISISFKGDEG 102 (334)
T ss_pred cccccCCCcEEEecCCCCceEEEEEeCCCcEEEEECCC------EEEEEcCCCCCceECccCCcccccceeeeEEcCCcE
Confidence 34334445766543333344445555566777777421 23322223358988743 3222 2233344445667
Q ss_pred EEEecCCCCCccceEEEEeCCCCcEEECCCC-CCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccc
Q 005735 449 YIFGGGDGNSWHNTVESYSPANDEWTSRPSL-NGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM 526 (680)
Q Consensus 449 yV~GG~~~~~~~~~v~vyD~~t~~W~~l~~l-p~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~ 526 (680)
|+.|.. ..++.=.-.-.+|+.+... ..+........+ ++.+|+.|.. ..++.-+-.-.+|+.+...
T Consensus 103 ~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~ 170 (334)
T PRK13684 103 WIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVED 170 (334)
T ss_pred EEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCC
Confidence 766532 1233333334689988532 122222233333 3446655432 1233333345689987543
Q ss_pred cccccceEEEEECCEEEEEcCCCCCCcCceeEEE-eCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeE
Q 005735 527 LQKRFALAAAELNGVLYATGGYDGNEYMNSAERF-DPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSI 604 (680)
Q Consensus 527 p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~y-D~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v 604 (680)
... ....+....+..|++.|..+ .++.- |....+|+.+.. +..+..++++.. ++.++++|.. + .
T Consensus 171 ~~g-~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G------~ 236 (334)
T PRK13684 171 AAG-VVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G------Q 236 (334)
T ss_pred Ccc-eEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C------E
Confidence 322 22333334344444434333 23332 344467998854 444444444443 6778888642 1 2
Q ss_pred EEEe-C-CCCcEEEcCCC-CCC-ccceEEEEE-CCEEEEEecccCCCcccceEEEEcCCCCeEeccc
Q 005735 605 EVYD-P-RLGSWMSGEPM-KLS-RGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEGQGWEEINS 666 (680)
Q Consensus 605 ~~yD-~-~t~~W~~v~~l-p~~-R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~~~W~~v~~ 666 (680)
..+. . .-.+|+.+... ... ...++++.. ++.+++.|.... -+...+-+.+|..+..
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~------v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGT------LLVSKDGGKTWEKDPV 297 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCe------EEEeCCCCCCCeECCc
Confidence 3342 2 33589975321 111 222333333 567888875321 1122233378988753
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.63 E-value=2.1 Score=44.45 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=77.9
Q ss_pred EEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 487 AGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 487 a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
+... .+|.+|.--|..+. +.+..||+.+++-....++|...++=+++.++++||..-=.+ ...++||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEEEEcccc-
Confidence 3444 57889988776553 678899999999777778888889999999999999984322 3678999875
Q ss_pred cEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 566 YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 566 ~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
.+.+...+.+..+.+++.-+..|++-.| .+.++.+||++-
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f 159 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETF 159 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECC------ccceEEECCccc
Confidence 5666666666677788877888998888 357889998763
No 93
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.57 E-value=8.3 Score=41.13 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=50.7
Q ss_pred EEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEE
Q 005735 510 VEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKL 589 (680)
Q Consensus 510 ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~I 589 (680)
+-+++..|... +..+..-+.+-++..++|++.|-|..+ +.|-.||.+.+..-++-.-- -..-.++-++++-
T Consensus 342 ikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~cLRvLeGH--EeLvRciRFd~kr 412 (499)
T KOG0281|consen 342 IKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLRVLEGH--EELVRCIRFDNKR 412 (499)
T ss_pred EEEEeccceee--ehhhhcccccceehhccCeEEEecCCC-----ceEEEEeccccHHHHHHhch--HHhhhheeecCce
Confidence 44555555443 334444556778889999999987655 46788888877654442110 0112346678888
Q ss_pred EEEeccCCC
Q 005735 590 YALGGFDGS 598 (680)
Q Consensus 590 yviGG~~~~ 598 (680)
++-||++|.
T Consensus 413 IVSGaYDGk 421 (499)
T KOG0281|consen 413 IVSGAYDGK 421 (499)
T ss_pred eeeccccce
Confidence 899998763
No 94
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.56 E-value=1.6 Score=45.39 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=73.3
Q ss_pred EEE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 535 AAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 535 ~~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
... .+|.||.--|..+. +.+.++|+.+++-.....+|...+.-+++.++++||.+-= ....+++||+++
T Consensus 50 L~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~~t-- 119 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDPNT-- 119 (264)
T ss_dssp EEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEETTT--
T ss_pred EEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----cCCeEEEEcccc--
Confidence 344 57899998776653 5788999999998888889998899999999999999843 345689999875
Q ss_pred EEEcCCCCCCccceEEEEECCEEEEEecc
Q 005735 614 WMSGEPMKLSRGYLGAAVVKEAIYVIGGV 642 (680)
Q Consensus 614 W~~v~~lp~~R~~~s~v~~~~~lyV~GG~ 642 (680)
.+.+...+.+..+.+++..+.++++--|.
T Consensus 120 l~~~~~~~y~~EGWGLt~dg~~Li~SDGS 148 (264)
T PF05096_consen 120 LKKIGTFPYPGEGWGLTSDGKRLIMSDGS 148 (264)
T ss_dssp TEEEEEEE-SSS--EEEECSSCEEEE-SS
T ss_pred ceEEEEEecCCcceEEEcCCCEEEEECCc
Confidence 56777777778889999888888888774
No 95
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.52 E-value=21 Score=39.90 Aligned_cols=191 Identities=13% Similarity=0.014 Sum_probs=94.6
Q ss_pred cCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEEC
Q 005735 413 LSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATID 492 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~ 492 (680)
...+++.|.....-+.+..-... ...-...-+++-+++...... ...++++|..+++.+.+...+..... ....-+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~-~~~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFA-PRFSPD 256 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccC-cEECCC
Confidence 46788888766544444321111 111111124443334332211 15799999999988777655432221 122225
Q ss_pred CE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 493 NK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 493 gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
|+ |++....++ ..+++.+|+.++....+..-+.....+ ...-++ +|+......+ ...++++|..+...+.+
T Consensus 257 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~~~-~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDTSP-SYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccCce-eEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEe
Confidence 54 444332222 357889999988776664322211111 112244 4444322222 24789999888777776
Q ss_pred ccCCCCCceeEEEEECC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 571 ANMNRRRGCHSLAVLNG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 571 ~~~p~~r~~~s~v~~~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
..... ........-++ .|++... ... ...++++|+.++....+.
T Consensus 330 t~~~~-~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 330 SFGGG-RYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVMKPDGSGERILT 374 (435)
T ss_pred ecCCC-cccCeEECCCCCEEEEEEc-CCC--ceEEEEEECCCCceEecc
Confidence 53211 11111122244 4444432 211 246889998777666553
No 96
>PRK13684 Ycf48-like protein; Provisional
Probab=91.64 E-value=22 Score=38.35 Aligned_cols=193 Identities=14% Similarity=0.129 Sum_probs=95.6
Q ss_pred CCeEEEcCCC-CCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEcc
Q 005735 423 CDVIKTLKPM-SSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGG 500 (680)
Q Consensus 423 t~~W~~l~~m-p~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG 500 (680)
-.+|+.+... ..+...+.+..+ ++.+|+.|... .+++-+-.-.+|+.+.... .-.-+......+..|++.|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G------~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g 190 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVG------AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVS 190 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceeeeccc------eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEe
Confidence 3589888532 222233334444 34566665432 3555555567999875432 2222333444444444434
Q ss_pred CCCCcccceEEE-EeCCCccEEEcccccccccceEEEE-ECCEEEEEcCCCCCCcCceeEEEe-C-CCCcEEEeccC-C-
Q 005735 501 GNGLECFSDVEM-LDLDIGKWIRTRSMLQKRFALAAAE-LNGVLYATGGYDGNEYMNSAERFD-P-REHYWTKIANM-N- 574 (680)
Q Consensus 501 ~~~~~~~~~ve~-yD~~t~~W~~i~~~p~~r~~~s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD-~-~t~~W~~v~~~-p- 574 (680)
..+. ++. .|....+|+.+.. +..+...+++. -++.++++|.. + ..++. . .-.+|+.+... .
T Consensus 191 ~~G~-----i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~~~~~~ 257 (334)
T PRK13684 191 SRGN-----FYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPIIPEIT 257 (334)
T ss_pred CCce-----EEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCccccccCCccc
Confidence 3222 111 2344457988754 33333334333 36788888643 2 12332 2 23589976421 1
Q ss_pred CCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC-CCCCccceEEEEE-CCEEEEEec
Q 005735 575 RRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP-MKLSRGYLGAAVV-KEAIYVIGG 641 (680)
Q Consensus 575 ~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~-lp~~R~~~s~v~~-~~~lyV~GG 641 (680)
.....++++.. ++.++++|.. ..++.-.....+|..+.. -..+.....++.. +++.|+.|.
T Consensus 258 ~~~~l~~v~~~~~~~~~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 258 NGYGYLDLAYRTPGEIWAGGGN------GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred cccceeeEEEcCCCCEEEEcCC------CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 11222333333 5678887753 223333334569999753 2223345555555 677777764
No 97
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.63 E-value=24 Score=38.56 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=67.2
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEE-EEECCEEEEEecCC----CCCccceEEEEeCCCCc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASA-AMLNGELYIFGGGD----GNSWHNTVESYSPANDE 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~-v~~~~~IyV~GG~~----~~~~~~~v~vyD~~t~~ 472 (680)
...+|+.-.....-. +.+.++|..+.+- +...+..+..+.+ .--+..|||.-.+. .+...+.+.+||..+.+
T Consensus 12 ~~~v~V~d~~~~~~~-~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 12 ARRVYVLDPGHFAAT-TQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCEEEEECCcccccC-ceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 455777655321122 7799999988653 3333333322223 22367899987732 23345789999999987
Q ss_pred EE-ECCCCCCCCcc------cEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 473 WT-SRPSLNGTKGS------LAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 473 W~-~l~~lp~~r~~------~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
-. +++..+.||.. ..+..-+|+ +||.- ....+.+-+.|+.+++-..
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 64 23322333421 122223554 77762 1224678899999988654
No 98
>PTZ00421 coronin; Provisional
Probab=91.62 E-value=29 Score=39.65 Aligned_cols=200 Identities=9% Similarity=0.116 Sum_probs=91.4
Q ss_pred EEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEE-----EcCCCCCCccceEEEEE---CCEEEEEecCCCCCccceE
Q 005735 393 LHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIK-----TLKPMSSARSYASAAML---NGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 393 ~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~-----~l~~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v 463 (680)
....+ ++.+++.|+.++ .+.+||..++... .+..+.........+.+ ++.+++.||.+ ..+
T Consensus 81 v~fsP~d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-----gtV 150 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-----MVV 150 (493)
T ss_pred EEEcCCCCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-----CEE
Confidence 44444 556777777653 4666776554221 11111111111122223 34577777765 357
Q ss_pred EEEeCCCCcEEECCCCCCCCcc-cEEE-EECCEEEEEccCCCCcccceEEEEeCCCccEEE-cccccccccceEEEEECC
Q 005735 464 ESYSPANDEWTSRPSLNGTKGS-LAGA-TIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR-TRSMLQKRFALAAAELNG 540 (680)
Q Consensus 464 ~vyD~~t~~W~~l~~lp~~r~~-~a~~-v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~-i~~~p~~r~~~s~~~~~g 540 (680)
.+||..+++-.. .+...... .+++ ..++.+++.|+.++ .+.+||+.+++-.. +..-...+........++
T Consensus 151 rIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 151 NVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred EEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence 889988764321 11111111 1122 22677777777553 46789988765221 111111111111111233
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcE--EEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYW--TKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W--~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
..++.+|.+.. .-..+.+||+.+..- ... ..... ....+..+ ++.++++||.++ ..|.+||+.+.....
T Consensus 224 ~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~~-~~~~~~~~d~d~~~L~lggkgD----g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 224 DLIITLGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQS-SALFIPFFDEDTNLLYIGSKGE----GNIRCFELMNERLTF 296 (493)
T ss_pred CeEEEEecCCC-CCCeEEEEeCCCCCCceeEe-ccCCC-CceEEEEEcCCCCEEEEEEeCC----CeEEEEEeeCCceEE
Confidence 34444443321 124688899875431 111 11111 11122222 455666666422 347788887776544
No 99
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.61 E-value=14 Score=38.40 Aligned_cols=183 Identities=22% Similarity=0.241 Sum_probs=103.3
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCC-----CCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPS-----CDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~-----t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
.++||++.|..+. .+..|.-. .+.....-.+|.+-.+.+.++.+|.+|---. ..+.+.+||..+++
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 6789999987654 46666332 2222333345566667777778888886433 24679999999886
Q ss_pred EEECCCCCCCCcc------------cEEEEECCEEEEEccCCCCcccceEEEEeCCC----ccEEEcccccccccceEEE
Q 005735 473 WTSRPSLNGTKGS------------LAGATIDNKIFAIGGGNGLECFSDVEMLDLDI----GKWIRTRSMLQKRFALAAA 536 (680)
Q Consensus 473 W~~l~~lp~~r~~------------~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t----~~W~~i~~~p~~r~~~s~~ 536 (680)
-.....+|.+... .-.++-++-|+|+-........-.+-..|+.+ .+|.. ..+....+ .+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhc-cee
Confidence 5522223322211 22344456688775543332222344566664 35653 23333233 244
Q ss_pred EECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec-cCCCCCceeEEEEE---CCEEEEEe
Q 005735 537 ELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIA-NMNRRRGCHSLAVL---NGKLYALG 593 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~~---~~~IyviG 593 (680)
.+=|.||++...+... ..-.+.||+.+++=..+. +++.+...+++..+ +.+||+..
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 4457899987655433 345678999987665443 23333344555555 56788874
No 100
>smart00284 OLF Olfactomedin-like domains.
Probab=91.61 E-value=15 Score=38.21 Aligned_cols=198 Identities=12% Similarity=0.122 Sum_probs=103.2
Q ss_pred CCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCC----CCcEEECCCCCCCCcccEEEEECCEEEE
Q 005735 422 SCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA----NDEWTSRPSLNGTKGSLAGATIDNKIFA 497 (680)
Q Consensus 422 ~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~----t~~W~~l~~lp~~r~~~a~~v~~gkIyV 497 (680)
..+.|.+-+..+.+. ++++|++.+.. ...+.++.|... ...+.+.-.+|.+-.+.+.++.+|.+|.
T Consensus 19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY 88 (255)
T smart00284 19 KSGAWMKDPLWNTTK--------KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYF 88 (255)
T ss_pred ccceeecCCCCCCCC--------CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEE
Confidence 445676655433321 46778776643 112345555332 3333333346777778888999999998
Q ss_pred EccCCCCcccceEEEEeCCCccEEEcccccccc----cc--------eEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 498 IGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR----FA--------LAAAELNGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 498 ~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r----~~--------~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
--. ....+..||+.+.+-.....+|.+. +. .-.++-.+.|+++=......-.-.+-.+|+.+-
T Consensus 89 ~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL 163 (255)
T smart00284 89 NKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATL 163 (255)
T ss_pred Eec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccc
Confidence 633 2467999999998865444444321 11 122333455666622211110112345676654
Q ss_pred ----cEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCC--ccceEEEEE---CCEE
Q 005735 566 ----YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLS--RGYLGAAVV---KEAI 636 (680)
Q Consensus 566 ----~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~--R~~~s~v~~---~~~l 636 (680)
+|.. ..+..... .+.++-|.||++-... .....-.+.||+.+++=.. ..+|.+ ...+++.-. +.+|
T Consensus 164 ~ve~tW~T--~~~k~sa~-naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~L 238 (255)
T smart00284 164 TIENTWIT--TYNKRSAS-NAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKL 238 (255)
T ss_pred eEEEEEEc--CCCccccc-ccEEEeeEEEEEccCC-CCCcEEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeE
Confidence 4544 22222222 3344457888885321 1112235899998876333 233433 334444444 5667
Q ss_pred EEE
Q 005735 637 YVI 639 (680)
Q Consensus 637 yV~ 639 (680)
|+.
T Consensus 239 Y~w 241 (255)
T smart00284 239 YAW 241 (255)
T ss_pred EEE
Confidence 776
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.43 E-value=28 Score=38.98 Aligned_cols=216 Identities=11% Similarity=0.002 Sum_probs=104.4
Q ss_pred ccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE
Q 005735 412 WLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 412 ~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
....+++.|.....-+.+..-.. ....-...-+++.+++...... ...++++|..+++-+.+...+..-.. ....-
T Consensus 177 ~~~~l~~~d~dg~~~~~lt~~~~-~~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SP 252 (429)
T PRK03629 177 FPYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGA-PAFSP 252 (429)
T ss_pred cceeEEEEcCCCCCCEEeecCCC-ceeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCCCCcCC-eEECC
Confidence 35678888876544333322111 1111111124443333222111 24688999988877666554432111 12222
Q ss_pred CCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCE-EEEEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 492 DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGV-LYATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 492 ~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
+|+ |++.....+ ...++.+|+.+++...+..-......+ ...-+|+ |+......+ ...+|.+|+.++..+.
T Consensus 253 DG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQR 325 (429)
T ss_pred CCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCCCC---CceEEEEECCCCCeEE
Confidence 554 554432222 235889999998877664332211111 1112444 444332221 2478899998877766
Q ss_pred eccCCCCCceeEEEEECCE-EEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccC
Q 005735 570 IANMNRRRGCHSLAVLNGK-LYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 570 v~~~p~~r~~~s~v~~~~~-IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
+...... .......-+++ |+..+..++ ...++++|+.++.+..+...... ... ...-+++.+++.+.+.
T Consensus 326 lt~~~~~-~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~~~~~-~~p-~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 326 ITWEGSQ-NQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTDTFLD-ETP-SIAPNGTMVIYSSSQG 395 (429)
T ss_pred eecCCCC-ccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCCCCCC-CCc-eECCCCCEEEEEEcCC
Confidence 6432111 11111222444 444443222 24689999999988877532111 111 1123666666665543
No 102
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=91.08 E-value=22 Score=37.27 Aligned_cols=209 Identities=19% Similarity=0.247 Sum_probs=100.8
Q ss_pred eEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE----ECCCCCCCCcccEEEE
Q 005735 415 TLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT----SRPSLNGTKGSLAGAT 490 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~----~l~~lp~~r~~~a~~v 490 (680)
.+.++|.-|..=...-+||..-...++-.-.+.....||.+ +.+-+|+..+..=+ .-..++.-..+.+++.
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEE
Confidence 45666655433233334544433333333367888889977 34667777654211 1122344455556665
Q ss_pred E-CCEEEEEccCCCCcccceEEEEeCCCccEEEc-ccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEE
Q 005735 491 I-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT-RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWT 568 (680)
Q Consensus 491 ~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 568 (680)
+ ++.-++-|..+ .....+|+++++=... ..-..-.........+++.|+-||.++ ...+||.+.....
T Consensus 153 f~dD~~ilT~SGD-----~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-----~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 153 FLDDNHILTGSGD-----MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-----SAKLWDVRSGQCV 222 (343)
T ss_pred EcCCCceEecCCC-----ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc-----ceeeeeccCccee
Confidence 5 43333333222 2455788887763321 100000011111112788999999875 4567888776544
Q ss_pred EeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc-CCCCCCccceEEE-EECCEEEEEecccC
Q 005735 569 KIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG-EPMKLSRGYLGAA-VVKEAIYVIGGVKN 644 (680)
Q Consensus 569 ~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v-~~lp~~R~~~s~v-~~~~~lyV~GG~~~ 644 (680)
..-.-...-. .++..+ +|.-++.|-.+ ..+-.||++.+.=..+ ..-+..-...+++ ...|++++.|+.+.
T Consensus 223 qtF~ghesDI-Nsv~ffP~G~afatGSDD-----~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 223 QTFEGHESDI-NSVRFFPSGDAFATGSDD-----ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred Eeeccccccc-ceEEEccCCCeeeecCCC-----ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 3321111111 122222 45555555433 2467888887643322 2222111111222 23688888875443
No 103
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.70 E-value=7.3 Score=41.59 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=85.7
Q ss_pred CEEEEEecCC--C--CCcc-ceEEEEeCCCC-----cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeC
Q 005735 446 GELYIFGGGD--G--NSWH-NTVESYSPAND-----EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDL 515 (680)
Q Consensus 446 ~~IyV~GG~~--~--~~~~-~~v~vyD~~t~-----~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~ 515 (680)
...+|+|... + .... ..+.+|+.... +++.+......-.-.+.+.+++++.+.-| +.+.+|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 4666666532 1 1122 66889988885 55555444444445566777888666654 57889998
Q ss_pred CCcc-EEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEE
Q 005735 516 DIGK-WIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYAL 592 (680)
Q Consensus 516 ~t~~-W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~Iyvi 592 (680)
...+ +.....+..+-...++.+.++.|++---..+ -.++.|+....+-..++.-..+++..++..+ ++..+++
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 8888 8888777666677788888887776322211 2355678766678888777777877777777 6553333
No 104
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.57 E-value=22 Score=36.30 Aligned_cols=177 Identities=9% Similarity=0.081 Sum_probs=97.9
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
..+..+|..+++-.+.- -..-..-.++.+ ...|.+-|+.+ .++.++|.+++..+.+.-+...+-.-.++.+
T Consensus 81 k~v~vwDV~TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCeeeeec--ccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 45888999987633221 111111223333 34566666655 5688999999998888888888888888888
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe-
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI- 570 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v- 570 (680)
.+..++.|..++. +-.||+..++-.. .-+..|... ....-++...++|-.+ ..+..+|.++++--..
T Consensus 154 ~~heIvaGS~DGt-----vRtydiR~G~l~s-Dy~g~pit~-vs~s~d~nc~La~~l~-----stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 154 AEHEIVAGSVDGT-----VRTYDIRKGTLSS-DYFGHPITS-VSFSKDGNCSLASSLD-----STLRLLDKETGKLLKSY 221 (307)
T ss_pred cccEEEeeccCCc-----EEEEEeecceeeh-hhcCCccee-EEecCCCCEEEEeecc-----ceeeecccchhHHHHHh
Confidence 8888888876655 4478887666321 112222111 1112244555555443 2455566666542111
Q ss_pred ccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 571 ANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 571 ~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
......-+..-++..+..-.+++|..+ ..|+.||+....
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSED----G~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSED----GKVYFWDLVDET 260 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCC----ceEEEEEeccce
Confidence 011111112233444445566777543 357888876543
No 105
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.47 E-value=37 Score=38.73 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=38.7
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCC-C--ccceEEEEECCEEEEEecCCCC----CccceEEEEeCC
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSS-A--RSYASAAMLNGELYIFGGGDGN----SWHNTVESYSPA 469 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~-~--R~~~s~v~~~~~IyV~GG~~~~----~~~~~v~vyD~~ 469 (680)
+.||+... ...++.+|..+++ |+.-..... . ....+.++.++.+|+ |..... .....++.+|..
T Consensus 111 ~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTF------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecC------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECC
Confidence 66776432 2468999998764 775432221 1 112234555666665 432211 123578999998
Q ss_pred CC--cEEE
Q 005735 470 ND--EWTS 475 (680)
Q Consensus 470 t~--~W~~ 475 (680)
|+ .|+.
T Consensus 184 TG~~~W~~ 191 (488)
T cd00216 184 TGKLLWRF 191 (488)
T ss_pred CCceeeEe
Confidence 76 4864
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.29 E-value=24 Score=36.25 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=30.1
Q ss_pred eCCCCcEEE--cCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC--CCeEeccc
Q 005735 608 DPRLGSWMS--GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINS 666 (680)
Q Consensus 608 D~~t~~W~~--v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~--~~W~~v~~ 666 (680)
+.+...|+. +.+.|.+-...+- .+-+.++.++|.++ .|.+|.++ ++|..++.
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSW-S~sGn~LaVs~GdN------kvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSW-SLSGNILAVSGGDN------KVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCcccccccccCCcceEEEEE-eccccEEEEecCCc------EEEEEEeCCCCcEEEccc
Confidence 445567865 3455555333333 33455555555443 37788777 79999864
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.18 E-value=39 Score=38.54 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=66.6
Q ss_pred ceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCCC-----cccEEEEEC-CEEEEEccCCCCcccce
Q 005735 438 YASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTK-----GSLAGATID-NKIFAIGGGNGLECFSD 509 (680)
Q Consensus 438 ~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~r-----~~~a~~v~~-gkIyV~GG~~~~~~~~~ 509 (680)
..+.++.++.||+.... ..++.+|..+. .|+.-...+..+ .....++.+ ++||+... ...
T Consensus 54 ~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~ 121 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGR 121 (488)
T ss_pred ccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCe
Confidence 33456779999986542 35888998875 487643222111 111224446 78887532 246
Q ss_pred EEEEeCCCcc--EEEcccccc---cccceEEEEECCEEEEEcCCCCC----CcCceeEEEeCCCCc--EEEe
Q 005735 510 VEMLDLDIGK--WIRTRSMLQ---KRFALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHY--WTKI 570 (680)
Q Consensus 510 ve~yD~~t~~--W~~i~~~p~---~r~~~s~~~~~g~Lyv~GG~~~~----~~~~~v~~yD~~t~~--W~~v 570 (680)
+..+|..+++ |+.-..... .....+.++.++.+|+ |..+.. .....++.+|..+++ |+.-
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 7899998764 875432211 0112233455666665 432211 123578999998764 8653
No 108
>PRK03629 tolB translocation protein TolB; Provisional
Probab=89.97 E-value=37 Score=37.98 Aligned_cols=205 Identities=9% Similarity=-0.012 Sum_probs=101.1
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
.....+++..+++..... ....++++|..+++-+.+...+..-......--+.+|++.....+ ...++++|..++
T Consensus 203 ~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg 277 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASG 277 (429)
T ss_pred eeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCC
Confidence 344555665554433211 135689999988877776544332111111111445555433222 135899999998
Q ss_pred cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCC
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDG 550 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~ 550 (680)
+.+.+..-..... .....-+|+.+++..... ....++.+|+.++.-..+......... ....-+| .|++.+..++
T Consensus 278 ~~~~lt~~~~~~~-~~~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 278 QIRQVTDGRSNNT-EPTWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEGSQNQD-ADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CEEEccCCCCCcC-ceEECCCCCEEEEEeCCC--CCceEEEEECCCCCeEEeecCCCCccC-EEECCCCCEEEEEEccCC
Confidence 8877654322111 111222555333332211 124788889988766555322111111 1112244 4444443222
Q ss_pred CCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 551 NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 551 ~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
...++++|+.++.++.+..... .......-+++.+++.+.++. ...+++.+....
T Consensus 354 ---~~~I~~~dl~~g~~~~Lt~~~~--~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~ 408 (429)
T PRK03629 354 ---QQHIAKQDLATGGVQVLTDTFL--DETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGR 408 (429)
T ss_pred ---CceEEEEECCCCCeEEeCCCCC--CCCceECCCCCEEEEEEcCCC--ceEEEEEECCCC
Confidence 2368899999998887763211 111122246666666554332 233555665443
No 109
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=89.79 E-value=21 Score=35.25 Aligned_cols=141 Identities=23% Similarity=0.236 Sum_probs=73.7
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCCc--EEEC----CCCCCCCcccEEEEE-C-CEEEEEccCCCCcccceEE
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSR----PSLNGTKGSLAGATI-D-NKIFAIGGGNGLECFSDVE 511 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~--W~~l----~~lp~~r~~~a~~v~-~-gkIyV~GG~~~~~~~~~ve 511 (680)
+++...+++|+|-|. .+|+++..... -+.+ +.+| ..--++... + +++|+|-| +..+
T Consensus 11 A~~~~~g~~y~FkG~-------~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKGR-------YFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred eEEEeCCEEEEEeCC-------EEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECC-------CEEE
Confidence 344556999999773 46777754111 1111 1122 112223333 3 88999966 3466
Q ss_pred EEeCCCccEE---Ecc--cccc--cccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-----e----ccC
Q 005735 512 MLDLDIGKWI---RTR--SMLQ--KRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTK-----I----ANM 573 (680)
Q Consensus 512 ~yD~~t~~W~---~i~--~~p~--~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-----v----~~~ 573 (680)
.||..+..+. .+. ..+. .... ++... ++++|++.| +..|+||...++... + ..+
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~ 146 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGV 146 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCc
Confidence 6765542221 111 1111 1122 22233 689999987 367888875544321 1 112
Q ss_pred CCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 574 NRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 574 p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
|. ..-++... ++++|++-| +..+.||..+++
T Consensus 147 p~--~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 147 PD--KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CC--CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 21 12233334 488999977 468999988765
No 110
>PRK10115 protease 2; Provisional
Probab=88.88 E-value=59 Score=38.85 Aligned_cols=257 Identities=8% Similarity=-0.007 Sum_probs=130.4
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCC-CCCCccceEEEEE-CC-EEEEEecCCCCCccceEEEEeC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP-MSSARSYASAAML-NG-ELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~-mp~~R~~~s~v~~-~~-~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
...+.++++.++++--.+......+++.|+.++.. ++. ++..+ ..++.. ++ .+|+..-.........+++++.
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 44556688888888655556667788999987741 221 22222 233333 44 4544332212123477999999
Q ss_pred CCCcE--EECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeC--CCccEEEc-ccccccccceEEEEECCEE
Q 005735 469 ANDEW--TSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDL--DIGKWIRT-RSMLQKRFALAAAELNGVL 542 (680)
Q Consensus 469 ~t~~W--~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~--~t~~W~~i-~~~p~~r~~~s~~~~~g~L 542 (680)
.|..- ..+-.-+........... +++..++..... ..+.++.|+. .+..|..+ +......+ .....++.+
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 282 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHEY--SLDHYQHRF 282 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCEE--EEEeCCCEE
Confidence 88722 222111111222222223 555444443332 2356777773 33444333 22222222 233446888
Q ss_pred EEEcCCCCCCcCceeEEEeCC-CCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 543 YATGGYDGNEYMNSAERFDPR-EHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~-t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
|+.--.+. ....+...+.. ...|+.+-+.......-.+...++.|++..-.++ ...++++|..++....+. ++
T Consensus 283 y~~tn~~~--~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~ 356 (686)
T PRK10115 283 YLRSNRHG--KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FD 356 (686)
T ss_pred EEEEcCCC--CCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CC
Confidence 88754432 22346777776 5789888654333333345556788877765443 345788887666555543 11
Q ss_pred CCccceEEEEE----C-CEEEE-EecccCCCcccceEEEEcCC-CCeEecccC
Q 005735 622 LSRGYLGAAVV----K-EAIYV-IGGVKNGSEIVDTVERFKEG-QGWEEINSR 667 (680)
Q Consensus 622 ~~R~~~s~v~~----~-~~lyV-~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~ 667 (680)
.+... +.... + +.+++ +.+.. .-.+++.|++. .+|+.+...
T Consensus 357 ~~~~~-~~~~~~~~~~~~~~~~~~ss~~----~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 357 DPAYV-TWIAYNPEPETSRLRYGYSSMT----TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CCceE-eeecccCCCCCceEEEEEecCC----CCCEEEEEECCCCcEEEEEec
Confidence 12221 11111 1 23332 22332 23578888877 677766543
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=88.77 E-value=19 Score=37.99 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=70.3
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 540 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g 540 (680)
.++-.||..++.-+ ..+.....-..++..+..=.+.||.++ .+-+||+.++.=..+..-..+..+..-. ...
T Consensus 35 gslrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 45677877766211 111112222344455655556677654 4668999988866665332222111111 123
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
..++.||+++ .|..+|+.+.. .+.....+...+++-+.+++ +++|+.+ ..+.+||+++..
T Consensus 107 ~~vIsgsWD~-----~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~~-LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 107 GCVISGSWDK-----TIKFWDPRNKV--VVGTFDQGKKVYCMDVSGNR-LVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred CeEEEcccCc-----cEEEEeccccc--cccccccCceEEEEeccCCE-EEEeecC-----ceEEEEEccccc
Confidence 4567788874 68889987621 11222223344555554555 4555543 458899987753
No 112
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.53 E-value=46 Score=37.15 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=105.5
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECC
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN 493 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g 493 (680)
..++..|......+.+..-...-... ...-+++.+++...... ...++++|..+++=..+...+... ......-+|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCc-cceEECCCC
Confidence 56888887655444443221111111 11124544444433221 246899999888665554433211 112222255
Q ss_pred -EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEec
Q 005735 494 -KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGV-LYATGGYDGNEYMNSAERFDPREHYWTKIA 571 (680)
Q Consensus 494 -kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 571 (680)
+|++....++ ..+++.+|..++....+..-......+ ...-+|+ |+......+ ...+|.++..++..+.+.
T Consensus 252 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 252 RTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDTEP-FFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCcCe-EEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEe
Confidence 4544333222 357888898877765553321111111 1222454 544432222 246888888877777664
Q ss_pred cCCCCCceeEE-EEECC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccCCCccc
Q 005735 572 NMNRRRGCHSL-AVLNG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIV 649 (680)
Q Consensus 572 ~~p~~r~~~s~-v~~~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~ 649 (680)
... ...... ..-++ .|+.....++ ...++++|+.++..+.+..-... ..-...-+++.+++.....+.
T Consensus 325 ~~g--~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt~~~~~--~~p~~spdg~~l~~~~~~~g~--- 394 (427)
T PRK02889 325 FTG--SYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALTDTTRD--ESPSFAPNGRYILYATQQGGR--- 394 (427)
T ss_pred cCC--CCcCceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEccCCCCc--cCceECCCCCEEEEEEecCCC---
Confidence 211 111111 22244 4444333222 13689999988887776432111 111112256666665544321
Q ss_pred ceEEEEcCCC
Q 005735 650 DTVERFKEGQ 659 (680)
Q Consensus 650 ~~ve~y~~~~ 659 (680)
..+++.+..+
T Consensus 395 ~~l~~~~~~g 404 (427)
T PRK02889 395 SVLAAVSSDG 404 (427)
T ss_pred EEEEEEECCC
Confidence 3455555543
No 113
>PTZ00421 coronin; Provisional
Probab=88.32 E-value=53 Score=37.60 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEE-----CCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCC
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTS-----RPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLD 516 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~-----l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~ 516 (680)
++.+++.|+.++ .+.+||..+..... +..+..-.....++.+ ++.+++.||.+ ..+.+||+.
T Consensus 87 d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-----gtVrIWDl~ 156 (493)
T PTZ00421 87 DPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-----MVVNVWDVE 156 (493)
T ss_pred CCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-----CEEEEEECC
Confidence 456777777653 57778776542211 1111111111112222 23566766654 346788988
Q ss_pred CccEEE-cccccccccceEEE-EECCEEEEEcCCCCCCcCceeEEEeCCCCcEE-EeccCCCCCceeEEEEECCEEEEEe
Q 005735 517 IGKWIR-TRSMLQKRFALAAA-ELNGVLYATGGYDGNEYMNSAERFDPREHYWT-KIANMNRRRGCHSLAVLNGKLYALG 593 (680)
Q Consensus 517 t~~W~~-i~~~p~~r~~~s~~-~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~-~v~~~p~~r~~~s~v~~~~~IyviG 593 (680)
+++-.. +...... ..+++ .-++.+++.|+.++ .+.+||+.++.-. .+..-............++..++..
T Consensus 157 tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 765321 1111111 11122 22677888887764 6889999876532 2211111111111111233333444
Q ss_pred ccCCCCCCCeEEEEeCCCC
Q 005735 594 GFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 594 G~~~~~~~~~v~~yD~~t~ 612 (680)
|.+.. .-..+.+||+++.
T Consensus 230 G~s~s-~Dr~VklWDlr~~ 247 (493)
T PTZ00421 230 GCSKS-QQRQIMLWDTRKM 247 (493)
T ss_pred ecCCC-CCCeEEEEeCCCC
Confidence 43211 1246889998753
No 114
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=87.58 E-value=38 Score=35.08 Aligned_cols=197 Identities=18% Similarity=0.168 Sum_probs=96.2
Q ss_pred CCCEEEE--EecC-CCCcccCeEEEEeCCC-CeEEEc---CCC----CC-CccceEEEEECCEEEEEecCC--CCCccce
Q 005735 397 PSESIYL--VGGC-DGDSWLSTLELYLPSC-DVIKTL---KPM----SS-ARSYASAAMLNGELYIFGGGD--GNSWHNT 462 (680)
Q Consensus 397 ~~~~Iyv--~GG~-~~~~~~~~v~~yd~~t-~~W~~l---~~m----p~-~R~~~s~v~~~~~IyV~GG~~--~~~~~~~ 462 (680)
.++.||. ++|. -|...+.-.|+-.... ++|..- .++ |. .-++.++.+++++||.+=-.. .+..+..
T Consensus 24 y~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~ 103 (367)
T PF12217_consen 24 YDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVR 103 (367)
T ss_dssp ETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEE
T ss_pred ecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhh
Confidence 3666663 3443 2444444445443332 467532 222 21 234567888999999875432 2333444
Q ss_pred EEEEe---CCCCcEEE--CCCCCC-------CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccE--------EE
Q 005735 463 VESYS---PANDEWTS--RPSLNG-------TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW--------IR 522 (680)
Q Consensus 463 v~vyD---~~t~~W~~--l~~lp~-------~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W--------~~ 522 (680)
.+.|| ...+.|+. ++.++. ...-|+.+.+++.-|.+|-.++......+-.+-.. ..| +.
T Consensus 104 ~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs-~~~~sp~~~vrr~ 182 (367)
T PF12217_consen 104 AELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS-DAFASPGVFVRRI 182 (367)
T ss_dssp EEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET-TTTT-TT--EEEE
T ss_pred hhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec-ccccCCcceeeee
Confidence 55555 34677864 344443 34457889999988899876665544444332111 111 12
Q ss_pred cc-cccccccceEEEEECCEEEEEcC-CCCCCcCceeEEEeCCCCcEEEecc-CCCCCceeEEEEECCEEEEEec
Q 005735 523 TR-SMLQKRFALAAAELNGVLYATGG-YDGNEYMNSAERFDPREHYWTKIAN-MNRRRGCHSLAVLNGKLYALGG 594 (680)
Q Consensus 523 i~-~~p~~r~~~s~~~~~g~Lyv~GG-~~~~~~~~~v~~yD~~t~~W~~v~~-~p~~r~~~s~v~~~~~IyviGG 594 (680)
++ .....-..+++-.++|.||+.-. ......-+.+.+-+.....|..+.- -.........+..++.||++|-
T Consensus 183 i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 183 IPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp --GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred chhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 22 12223345566677999999853 3344555678888888889998842 2223334456778999999985
No 115
>PRK02889 tolB translocation protein TolB; Provisional
Probab=86.40 E-value=60 Score=36.21 Aligned_cols=164 Identities=11% Similarity=0.016 Sum_probs=82.0
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLN-GELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~-~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
...+++..+++..... ....++++|..+++-..+...+.... .....-+ .+|++....++ ...+|.+|..+..
T Consensus 202 ~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~ 275 (427)
T PRK02889 202 AWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDG---NSQIYTVNADGSG 275 (427)
T ss_pred eEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCC---CceEEEEECCCCC
Confidence 4445665555554322 23569999998887666644332111 1111124 45554443332 2578999988777
Q ss_pred EEECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCC
Q 005735 473 WTSRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDG 550 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~ 550 (680)
.+++..-.. ........-+|+ |+......+ ...++.+|..++..+.+..-......+ ...-+| .|+......+
T Consensus 276 ~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 276 LRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGSYNTSP-RISPDGKLLAYISRVGG 350 (427)
T ss_pred cEECCCCCC-CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCCCcCce-EECCCCCEEEEEEccCC
Confidence 666543221 111122223555 443322111 246788888877766554211111111 122244 4444433222
Q ss_pred CCcCceeEEEeCCCCcEEEec
Q 005735 551 NEYMNSAERFDPREHYWTKIA 571 (680)
Q Consensus 551 ~~~~~~v~~yD~~t~~W~~v~ 571 (680)
. ..++++|+.++..+.+.
T Consensus 351 -~--~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 351 -A--FKLYVQDLATGQVTALT 368 (427)
T ss_pred -c--EEEEEEECCCCCeEEcc
Confidence 1 36899999888877664
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.09 E-value=63 Score=36.13 Aligned_cols=189 Identities=10% Similarity=0.035 Sum_probs=99.9
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEEC
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAMLN-GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATID 492 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~-~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~ 492 (680)
.++|++|..+++=+.+...+.. .......-+ .+|++.-...+ ..++|.+|..++.++++...+..-.. ....-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~-p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVN-GNFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCc-cEECCC
Confidence 4899999999887777542221 111112224 45655443322 35799999999999888654431111 122224
Q ss_pred C-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCCCCC---cCceeEEEeCCCCcE
Q 005735 493 N-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGNE---YMNSAERFDPREHYW 567 (680)
Q Consensus 493 g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~~~---~~~~v~~yD~~t~~W 567 (680)
| +||...... -...++.+|+.+++.+.+..-.. ... ...-+| .|.......... ....++++|+.++.+
T Consensus 288 G~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g~--~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 288 DKRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHGK--NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCEEEEEECCC---CCceEEEEECCCCCeEeCccCCC--cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 4 466554322 23579999999988866643211 122 222244 444443322111 225799999999999
Q ss_pred EEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 568 TKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 568 ~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
+.+.... ........-+|+.+++-...+ ....++.++++.+.=..+
T Consensus 362 ~~LT~~~--~~~~p~~SPDG~~I~f~~~~~--~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 362 RRLTANG--VNQFPRFSSDGGSIMFIKYLG--NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred EECCCCC--CcCCeEECCCCCEEEEEEccC--CcEEEEEEecCCCeeEEe
Confidence 8886532 111222233555333322221 123467777765433333
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=85.93 E-value=50 Score=34.89 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=74.9
Q ss_pred cccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEe
Q 005735 388 ESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 388 ~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
.....+...+....++++-+ ...+..||...+..+..- .....--.++..+..=.+.||.++ .+-+||
T Consensus 14 d~IS~v~f~~~~~~LLvssW-----DgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~D 81 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSW-----DGSLRLYDVPANSLKLKF--KHGAPLLDCAFADESTIVTGGLDG-----QVRRYD 81 (323)
T ss_pred hceeeEEEcCcCCcEEEEec-----cCcEEEEeccchhhhhhe--ecCCceeeeeccCCceEEEeccCc-----eEEEEE
Confidence 33334444444444555544 456888888877433221 111111223334554555677653 588899
Q ss_pred CCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcC
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG 547 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG 547 (680)
..+..=..+..-..+-....-. .....+|.||++ ..+..+|+.... .....-.+..-.++. +.+..+++|+
T Consensus 82 ln~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~~~-v~g~~LvVg~ 152 (323)
T KOG1036|consen 82 LNTGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYCMD-VSGNRLVVGT 152 (323)
T ss_pred ecCCcceeeccCCCceEEEEee-ccCCeEEEcccC-----ccEEEEeccccc--cccccccCceEEEEe-ccCCEEEEee
Confidence 9887655554322211111111 123355667766 346677776522 111111222333333 3455556666
Q ss_pred CCCCCcCceeEEEeCCCC
Q 005735 548 YDGNEYMNSAERFDPREH 565 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~ 565 (680)
.+ ..+.+||+.+.
T Consensus 153 ~~-----r~v~iyDLRn~ 165 (323)
T KOG1036|consen 153 SD-----RKVLIYDLRNL 165 (323)
T ss_pred cC-----ceEEEEEcccc
Confidence 54 37889998764
No 118
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.21 E-value=63 Score=35.61 Aligned_cols=208 Identities=13% Similarity=0.035 Sum_probs=109.6
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcc------cceEEEEeCCC
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLEC------FSDVEMLDLDI 517 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~------~~~ve~yD~~t 517 (680)
+++.++++=..++.-...+.++|..+++...- .++.+.... .+.. +++.+++...+.... ...++.+.+.+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 66666665433333345789999999854321 112222221 3334 445444444433222 66788888877
Q ss_pred ccEE--Eccccccccc-ceEE-EEECCEEEEEcCCCCCCcCceeEEEeCCCC-----cEEEeccCCCCCceeEEEEECCE
Q 005735 518 GKWI--RTRSMLQKRF-ALAA-AELNGVLYATGGYDGNEYMNSAERFDPREH-----YWTKIANMNRRRGCHSLAVLNGK 588 (680)
Q Consensus 518 ~~W~--~i~~~p~~r~-~~s~-~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~-----~W~~v~~~p~~r~~~s~v~~~~~ 588 (680)
..-+ .+-.-+...+ ...+ ..-+++.+++.-..+.. .+.++..|.... .|+.+..--. -..+.+...++.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHHGDR 289 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEETTE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEccCCE
Confidence 6543 2222222222 2222 22255544443333323 478999999875 7888864222 222334445889
Q ss_pred EEEEeccCCCCCCCeEEEEeCCCCc---EEE-cCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCCCCeE
Q 005735 589 LYALGGFDGSAMVPSIEVYDPRLGS---WMS-GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQGWE 662 (680)
Q Consensus 589 IyviGG~~~~~~~~~v~~yD~~t~~---W~~-v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~~~W~ 662 (680)
+|+.-.. ......+..+++.+.. |.. +.+-.....-..+...+++|++.-=.+ ....+.+|+...+|.
T Consensus 290 ~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 290 LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT-TEE
T ss_pred EEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECCCCcE
Confidence 9988653 2334678889988765 764 433333234445556688888775322 235688888863443
No 119
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.81 E-value=59 Score=34.71 Aligned_cols=212 Identities=14% Similarity=0.170 Sum_probs=93.3
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcC-CCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLK-PMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~-~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
++..|++|.. ..++.-.-.-.+|.+++ +.+.+...+.+..+ ++.++++|... .+++=.-.-.+|+.
T Consensus 71 ~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G------~iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 71 GNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG------AIYRTTDGGKTWQA 138 (302)
T ss_dssp TTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEE
T ss_pred CCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC------cEEEeCCCCCCeeE
Confidence 5678887753 12344344556899986 23344444555444 56777776532 35555556678987
Q ss_pred CCCCCCCCcccE-EEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCc
Q 005735 476 RPSLNGTKGSLA-GATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY 553 (680)
Q Consensus 476 l~~lp~~r~~~a-~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~ 553 (680)
+..-.. .... +... +|++++++.. +. -....|+-...|+........|.......-++.|+++. ..+
T Consensus 139 ~~~~~~--gs~~~~~r~~dG~~vavs~~-G~----~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg--- 207 (302)
T PF14870_consen 139 VVSETS--GSINDITRSSDGRYVAVSSR-GN----FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG--- 207 (302)
T ss_dssp EE-S------EEEEEE-TTS-EEEEETT-SS----EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT---
T ss_pred cccCCc--ceeEeEEECCCCcEEEEECc-cc----EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc---
Confidence 643222 2222 2222 5565555432 21 12356777778987655444444333333477888875 222
Q ss_pred CceeEEEe--CCCCcEEEeccCCC--CCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC-CCCCccc
Q 005735 554 MNSAERFD--PREHYWTKIANMNR--RRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP-MKLSRGY 626 (680)
Q Consensus 554 ~~~v~~yD--~~t~~W~~v~~~p~--~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~-lp~~R~~ 626 (680)
.+..-+ ....+|.+-. .|. ..+..--+.+ ++.+++.||.. .+++=.-.-++|+.... .+.+--.
T Consensus 208 --~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 208 --QIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVGENVPSNL 278 (302)
T ss_dssp --EEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGTTSSS--
T ss_pred --EEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECccccCCCCce
Confidence 233333 2345677622 232 2222222233 57899998843 23333345678999753 2233223
Q ss_pred eEEEEE-CCEEEEEec
Q 005735 627 LGAAVV-KEAIYVIGG 641 (680)
Q Consensus 627 ~s~v~~-~~~lyV~GG 641 (680)
..++.. .++-+++|.
T Consensus 279 ~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEEEETTEEEEE-S
T ss_pred EEEEEcCCCceEEECC
Confidence 344444 579999984
No 120
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.81 E-value=8.4 Score=35.29 Aligned_cols=81 Identities=23% Similarity=0.163 Sum_probs=56.2
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc---CCCCCceeEEEEECCEEEEEeccCCCC-CCCeEEEE-eCC
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAVLNGKLYALGGFDGSA-MVPSIEVY-DPR 610 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~---~p~~r~~~s~v~~~~~IyviGG~~~~~-~~~~v~~y-D~~ 610 (680)
+.+||.+|-..-. .......|..||..+.+|+.+.. .........++.++|+|.++.-..... ..-++|++ |..
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3468888877655 23345679999999999998864 234455677888899998876543221 23467888 466
Q ss_pred CCcEEEc
Q 005735 611 LGSWMSG 617 (680)
Q Consensus 611 t~~W~~v 617 (680)
+.+|...
T Consensus 81 k~~Wsk~ 87 (129)
T PF08268_consen 81 KQEWSKK 87 (129)
T ss_pred cceEEEE
Confidence 7789875
No 121
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.68 E-value=65 Score=35.06 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=83.8
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC--
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN-- 470 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t-- 470 (680)
+..++.||+.. .+ ..++.+|+.+.. |......-..........-+++||+ |..++ .+++||..+
T Consensus 65 ~~~dg~v~~~~-~~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGT-RD-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYV-GSWDG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEec-CC-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEE-ecccc-----eEEEEECCCCc
Confidence 44578888751 11 169999999987 8654332011111112222677765 44333 689999964
Q ss_pred CcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc--cEEEcccc-cccccceEEEEECCEEEEEcC
Q 005735 471 DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KWIRTRSM-LQKRFALAAAELNGVLYATGG 547 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~--~W~~i~~~-p~~r~~~s~~~~~g~Lyv~GG 547 (680)
..|+.-.... .+...+.+..++.+|+.- ....+..+|..++ .|..-.+. ...+.....+..++.+|+-..
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~ 205 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD 205 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC
Confidence 4686543332 333334455577777752 1245778888765 58744322 222322233355677776432
Q ss_pred CCCCCcCceeEEEeCCCC--cEEEe
Q 005735 548 YDGNEYMNSAERFDPREH--YWTKI 570 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~--~W~~v 570 (680)
. +...++.+|+.++ .|..-
T Consensus 206 ~----~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 206 G----YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred C----CcceEEEEEccCCcEeeeee
Confidence 1 1226888998765 47753
No 122
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=84.63 E-value=59 Score=34.52 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=98.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
.+..+.++++.+..+.+. .+.+.+|+..++. ...+...+.....|.+++. +..+|+..-. .+.+.+|
T Consensus 83 ~~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~ 153 (330)
T PRK11028 83 THISTDHQGRFLFSASYN----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----EDRIRLF 153 (330)
T ss_pred eEEEECCCCCEEEEEEcC----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----CCEEEEE
Confidence 345556555544444432 2456777765321 1122222222334554444 3467765432 2468899
Q ss_pred eCCCC-cEEECC----CCCCCCcccEEEEE-C-CEEEEEccCCCCcccceEEEEeCC--CccEEEc---cccc----ccc
Q 005735 467 SPAND-EWTSRP----SLNGTKGSLAGATI-D-NKIFAIGGGNGLECFSDVEMLDLD--IGKWIRT---RSML----QKR 530 (680)
Q Consensus 467 D~~t~-~W~~l~----~lp~~r~~~a~~v~-~-gkIyV~GG~~~~~~~~~ve~yD~~--t~~W~~i---~~~p----~~r 530 (680)
|..+. ...... ..+....-..++.. + ..+|+... ..+.+.+||.. +++++.+ ..+| .++
T Consensus 154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~ 228 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR 228 (330)
T ss_pred EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence 88763 221100 11111111122222 3 35777632 23567777776 4454332 2232 233
Q ss_pred cceEEEEE-CC-EEEEEcCCCCCCcCceeEEEeC--CCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeE
Q 005735 531 FALAAAEL-NG-VLYATGGYDGNEYMNSAERFDP--REHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSI 604 (680)
Q Consensus 531 ~~~s~~~~-~g-~Lyv~GG~~~~~~~~~v~~yD~--~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v 604 (680)
....++.. ++ .+|+.... .+.+.+|+. .+..++.+...+.......+... +..||+.+..+ +.+
T Consensus 229 ~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-----~~v 298 (330)
T PRK11028 229 WAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-----HHI 298 (330)
T ss_pred cceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC-----CcE
Confidence 32222222 33 56765321 235556655 44456555443322111222222 44677665322 345
Q ss_pred EEE--eCCCCcEEEcCCCCCCccceEEE
Q 005735 605 EVY--DPRLGSWMSGEPMKLSRGYLGAA 630 (680)
Q Consensus 605 ~~y--D~~t~~W~~v~~lp~~R~~~s~v 630 (680)
.+| |..++.+..+.....+....+++
T Consensus 299 ~v~~~~~~~g~l~~~~~~~~g~~P~~~~ 326 (330)
T PRK11028 299 SVYEIDGETGLLTELGRYAVGQGPMWVS 326 (330)
T ss_pred EEEEEcCCCCcEEEccccccCCCceEEE
Confidence 555 55667788777665554444443
No 123
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.29 E-value=60 Score=34.38 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=67.9
Q ss_pred cceEEEEeCCCcc----EEEcccccccccceEEE------EECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCC
Q 005735 507 FSDVEMLDLDIGK----WIRTRSMLQKRFALAAA------ELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR 576 (680)
Q Consensus 507 ~~~ve~yD~~t~~----W~~i~~~p~~r~~~s~~------~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~ 576 (680)
.+-++.||.++++ |..- +-.+.....=+ -++++||+.-+ ++.. ---+|..|.+++.-+.+..-|..
T Consensus 77 YSHVH~yd~e~~~VrLLWkes--ih~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~~~ps~ 152 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKES--IHDKTKWAGEVSDILYDPYEDRLLLARA-DGHA-NLGVYSLDRRTGKAEKLSSNPSL 152 (339)
T ss_pred cceEEEEEcCCCeEEEEEecc--cCCccccccchhheeeCCCcCEEEEEec-CCcc-eeeeEEEcccCCceeeccCCCCc
Confidence 4567888888776 4332 11122221111 13677777532 3222 22588889999988888766655
Q ss_pred CceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcE--EEcC--C----CC-CCccceEEEEECCEEEEE
Q 005735 577 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW--MSGE--P----MK-LSRGYLGAAVVKEAIYVI 639 (680)
Q Consensus 577 r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W--~~v~--~----lp-~~R~~~s~v~~~~~lyV~ 639 (680)
.. +.+++..+|-+ .+-..-...+.+||+.+++| ...+ . -+ ..|....++...+++|.|
T Consensus 153 KG---~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 153 KG---TLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred Cc---eEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 32 23333333333 22234467899999999999 3332 1 11 123344556666666655
No 124
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=84.16 E-value=28 Score=38.23 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=56.0
Q ss_pred CCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEccc-----cccc--ccceEEEEECCEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS-----MLQK--RFALAAAELNGVL 542 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~-----~p~~--r~~~s~~~~~g~L 542 (680)
.+.|+.+.. .....--.+.++|++|++.- ...++.++.+-. -..+.+ +... ......++..|.|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 489999864 22334567788999999832 234555553211 111111 1111 1234467788999
Q ss_pred EEEcCCCCCC--------------cCceeEEEeCCCCcEEEeccCC
Q 005735 543 YATGGYDGNE--------------YMNSAERFDPREHYWTKIANMN 574 (680)
Q Consensus 543 yv~GG~~~~~--------------~~~~v~~yD~~t~~W~~v~~~p 574 (680)
|++....... ..-.|+..|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 9998742110 1124566788889999998775
No 125
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.89 E-value=70 Score=34.80 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=83.9
Q ss_pred EEECCEEEEEecCCCCCccceEEEEeCCCCc--EEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc-
Q 005735 442 AMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG- 518 (680)
Q Consensus 442 v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~--W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~- 518 (680)
+..++++|+... + ..++.+|+.+.+ |+.....-..........-+|+||+-.. ++ .+++||..++
T Consensus 65 ~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCc
Confidence 666899998611 1 168999999876 8654332011111112222788777432 22 6889999654
Q ss_pred -cEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC--cEEEeccC-CCCCceeEEEEECCEEEEEec
Q 005735 519 -KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANM-NRRRGCHSLAVLNGKLYALGG 594 (680)
Q Consensus 519 -~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~-p~~r~~~s~v~~~~~IyviGG 594 (680)
.|..-.... .+.....+..++.+|+.. ....++.+|..++ .|+.-... ...+.....+..++.+|+- .
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~-~ 204 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG-S 204 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe-c
Confidence 587654332 444444556677777753 1236778887754 47644332 1222222223345555554 3
Q ss_pred cCCCCCCCeEEEEeCCCC--cEEE
Q 005735 595 FDGSAMVPSIEVYDPRLG--SWMS 616 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~--~W~~ 616 (680)
.+ . ...++.+|+.++ .|..
T Consensus 205 ~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CC--C-cceEEEEEccCCcEeeee
Confidence 22 1 236899999765 5764
No 126
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=82.70 E-value=66 Score=33.67 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=99.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
....+.+++...+.|++++ .+..+|..+++-.+.-.-+..-....+..-++.-+|-|..+ +++-.||...
T Consensus 67 ~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g 136 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLG 136 (315)
T ss_pred cceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc-----ceeeeeeecc
Confidence 3456666777777777653 45667777653222111111111111111256666666544 4555666554
Q ss_pred Cc-EEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEE
Q 005735 471 DE-WTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYAT 545 (680)
Q Consensus 471 ~~-W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~ 545 (680)
.- .+....+. |..-+++.+ + +-+++-+|.+. .+-++|+.+.+-...-.-...--....+.-+|.+...
T Consensus 137 ~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~Dk-----tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 137 VCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWDK-----TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred cEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCCc-----eEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 42 22221211 333333333 2 34666666553 3557777766522211111111122233448999999
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
||.++ .+..+|+.+.+- +-.+...-..++++..-++.+++-+.. ..|.++|++++.
T Consensus 210 Ggkdg-----~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 210 GGKDG-----EAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDLESKA 265 (315)
T ss_pred CCCCc-----eEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccC-----CceEEEeccchh
Confidence 99886 567788776653 334444445566776667766666543 347777776654
No 127
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=82.64 E-value=52 Score=32.42 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEc----CCCCCCccceEEEEEC-CEEEEEecCCCCCccceEEEEeCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTL----KPMSSARSYASAAMLN-GELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l----~~mp~~R~~~s~v~~~-~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+.+|+|-| +.+|+++..... -+.+ +.+|. ...++..... +++|+|-| +.+|+|+..+
T Consensus 16 ~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~~ 80 (194)
T cd00094 16 RGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVYTGKN 80 (194)
T ss_pred CCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEEcCcc
Confidence 488999977 357777765211 1112 11221 2222222223 89999977 3578887664
Q ss_pred CcEE---ECC--CCCC--CCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEc---------ccccccccc
Q 005735 471 DEWT---SRP--SLNG--TKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT---------RSMLQKRFA 532 (680)
Q Consensus 471 ~~W~---~l~--~lp~--~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i---------~~~p~~r~~ 532 (680)
..+. .+. .++. ..-. ++... ++++|++.| +..+.||..+++...- +.+|.. .
T Consensus 81 ~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--i 150 (194)
T cd00094 81 LEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--V 150 (194)
T ss_pred cccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC--c
Confidence 2221 111 1111 1122 23233 588999987 3466777665543211 122222 1
Q ss_pred eEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCc
Q 005735 533 LAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHY 566 (680)
Q Consensus 533 ~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~ 566 (680)
-++... ++++|++-| +..++||..+.+
T Consensus 151 daa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 151 DAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred ceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 223334 489999977 478999987665
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.30 E-value=72 Score=35.47 Aligned_cols=218 Identities=15% Similarity=0.081 Sum_probs=105.9
Q ss_pred ccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccce-EEEEE--CCEEEEEecCCCCCccceEEE
Q 005735 389 SSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYA-SAAML--NGELYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~-s~v~~--~~~IyV~GG~~~~~~~~~v~v 465 (680)
..-+.++.++++.+++||.+. .+.++|+.+..-... ....|..- +.+.. -+.+|..+-- .++-+
T Consensus 204 eil~~avS~Dgkylatgg~d~-----~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~D------rsvkv 270 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDR-----HVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASAD------RSVKV 270 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCc-----eEEEecCcccchhhc--ccccccceeeeeeecCccceeeeecC------CceEE
Confidence 344678888999999999753 456777776542222 22222221 22222 2356654321 12334
Q ss_pred EeCCCCcEEECCCCCCCCcccEEEE------ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC
Q 005735 466 YSPANDEWTSRPSLNGTKGSLAGAT------IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 539 (680)
Q Consensus 466 yD~~t~~W~~l~~lp~~r~~~a~~v------~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~ 539 (680)
++...... -...++|-..+ --+++..+||.+... ..|++...+ +.+ --+..-+.-+++.++
T Consensus 271 w~~~~~s~------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~-----rlwKi~ees-qli-frg~~~sidcv~~In 337 (479)
T KOG0299|consen 271 WSIDQLSY------VETLYGHQDGVLGIDALSRERCVTVGGRDRTV-----RLWKIPEES-QLI-FRGGEGSIDCVAFIN 337 (479)
T ss_pred EehhHhHH------HHHHhCCccceeeechhcccceEEecccccee-----EEEeccccc-eee-eeCCCCCeeeEEEec
Confidence 44332221 11122222222 146678888876442 334332211 111 011122333567778
Q ss_pred CEEEEEcCCCCCCcCceeEEEeCCCCcEEEe-----------ccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEE
Q 005735 540 GVLYATGGYDGNEYMNSAERFDPREHYWTKI-----------ANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVY 607 (680)
Q Consensus 540 g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v-----------~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~y 607 (680)
+.=|+.|+.++. |..++....+=.-+ .++..+++..+++++ +..+++.|-.++. -.+|.-
T Consensus 338 ~~HfvsGSdnG~-----IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~---vrLW~i 409 (479)
T KOG0299|consen 338 DEHFVSGSDNGS-----IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC---VRLWKI 409 (479)
T ss_pred ccceeeccCCce-----EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc---eEEEEe
Confidence 888888887764 44444433321111 122233455666665 4456766655442 234554
Q ss_pred eCCCCcEEEcCCCCCCccceEEE-EECCEEEEEe
Q 005735 608 DPRLGSWMSGEPMKLSRGYLGAA-VVKEAIYVIG 640 (680)
Q Consensus 608 D~~t~~W~~v~~lp~~R~~~s~v-~~~~~lyV~G 640 (680)
......-..+..+|....-.+++ ..+++-++.|
T Consensus 410 ~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 410 EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 44433555566667655555555 3356655555
No 129
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.62 E-value=95 Score=34.71 Aligned_cols=149 Identities=7% Similarity=-0.063 Sum_probs=84.1
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 539 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~ 539 (680)
..+|++|..+++=+.+...+.. .......-+| +|.+.-...+ ..+++.+|+.++.++.+...+..-..+...--+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 3799999998877766542221 1112222355 4544332222 368999999999998876544211111111124
Q ss_pred CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECC-EEEEEeccCCCC---CCCeEEEEeCCCCcEE
Q 005735 540 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG-KLYALGGFDGSA---MVPSIEVYDPRLGSWM 615 (680)
Q Consensus 540 g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~-~IyviGG~~~~~---~~~~v~~yD~~t~~W~ 615 (680)
.+||+.....+ ...++++|..++..+++..... ... ...-++ .|.......... ....++++|+.++.++
T Consensus 289 ~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~--~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 289 KRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK--NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCeEeCccCCC--cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 46777654322 2479999999988877743221 222 222244 444443322111 2357999999999998
Q ss_pred EcCC
Q 005735 616 SGEP 619 (680)
Q Consensus 616 ~v~~ 619 (680)
.+..
T Consensus 363 ~LT~ 366 (419)
T PRK04043 363 RLTA 366 (419)
T ss_pred ECCC
Confidence 8865
No 130
>PTZ00420 coronin; Provisional
Probab=81.39 E-value=1.2e+02 Score=35.54 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=70.6
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcc
Q 005735 446 GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR 524 (680)
Q Consensus 446 ~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~ 524 (680)
..+++.||.+ ..+.+||..+.+=.. .+.....-.+++. .+|.+++.++.+ ..+.+||+.+++=...-
T Consensus 138 ~~iLaSgS~D-----gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 138 YYIMCSSGFD-----SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIASSF 205 (568)
T ss_pred CeEEEEEeCC-----CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEEEEE
Confidence 3455666655 357888888764111 1111111112222 267777776543 35778999876421110
Q ss_pred cccc-cccceEEE--E--ECCEEEEEcCCCCCCcCceeEEEeCCC-CcEEEeccCCCCCceeEE-EEE---CCEEEEEec
Q 005735 525 SMLQ-KRFALAAA--E--LNGVLYATGGYDGNEYMNSAERFDPRE-HYWTKIANMNRRRGCHSL-AVL---NGKLYALGG 594 (680)
Q Consensus 525 ~~p~-~r~~~s~~--~--~~g~Lyv~GG~~~~~~~~~v~~yD~~t-~~W~~v~~~p~~r~~~s~-v~~---~~~IyviGG 594 (680)
.... .+...... . -++..++.+|.++. ....+.+||+.+ ..-...-.+... ...+ ..+ .+.+|+.|.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~~--~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDNA--SAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecCC--ccceEEeeeCCCCCEEEEEE
Confidence 0011 11111111 1 24455666666542 223688999874 221111111111 1111 112 367787775
Q ss_pred cCCCCCCCeEEEEeCCCCcEEEc
Q 005735 595 FDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.+ ..+.+|+...+.-..+
T Consensus 283 GD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 283 GD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CC-----CeEEEEEccCCcEEee
Confidence 43 3477787766543333
No 131
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.93 E-value=83 Score=33.60 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=103.6
Q ss_pred cccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCC-CCCC--ccceEEEEECCEEEEEecCCCCCccceEE
Q 005735 388 ESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP-MSSA--RSYASAAMLNGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 388 ~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~-mp~~--R~~~s~v~~~~~IyV~GG~~~~~~~~~v~ 464 (680)
.....+.+...+.-|++|-.. .+++=.---.+|..+.. ...+ ....++...++..|++|... -+.
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~g------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g------~ll 84 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAYG------TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG------LLL 84 (302)
T ss_dssp S-EEEEEESSSS-EEEEETTT------EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT------EEE
T ss_pred CceEEEEEecCCEEEEEecCC------EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc------eEE
Confidence 344455566678888888642 23332223357888753 2222 22334445588999987532 234
Q ss_pred EEeCCCCcEEECCC-CCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEE
Q 005735 465 SYSPANDEWTSRPS-LNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVL 542 (680)
Q Consensus 465 vyD~~t~~W~~l~~-lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~L 542 (680)
.-.-.-.+|++++- .+.+-..+....+ ++.++++|.. ..++.-.-.-.+|+.+..-...-.......-+|++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~ 158 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRY 158 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S----EEEEEE-TTS-E
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcE
Confidence 44445678999852 2233333333333 5667776532 12333333445898865322221111122225666
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEe--CCCCcEEEcC-C
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYD--PRLGSWMSGE-P 619 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD--~~t~~W~~v~-~ 619 (680)
++++.. + +-....|+-...|+........|.......-++.|+++. .. ..+..=+ ....+|.... +
T Consensus 159 vavs~~-G----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~~~ 227 (302)
T PF14870_consen 159 VAVSSR-G----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPIIP 227 (302)
T ss_dssp EEEETT-S----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B-T
T ss_pred EEEECc-c----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC-----cEEEEccCCCCccccccccCC
Confidence 666532 2 123356787788998876655555444444477787765 11 1233333 2445677622 2
Q ss_pred CCCCccc-eEEEEE-CCEEEEEecccCCCcccceEEE-EcCCCCeEeccc
Q 005735 620 MKLSRGY-LGAAVV-KEAIYVIGGVKNGSEIVDTVER-FKEGQGWEEINS 666 (680)
Q Consensus 620 lp~~R~~-~s~v~~-~~~lyV~GG~~~~~~~~~~ve~-y~~~~~W~~v~~ 666 (680)
....... ..++.. ++.+++.||... +++ -|-+.+|++...
T Consensus 228 ~~~~~~~~ld~a~~~~~~~wa~gg~G~-------l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 228 IKTNGYGILDLAYRPPNEIWAVGGSGT-------LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp TSS--S-EEEEEESSSS-EEEEESTT--------EEEESSTTSS-EE-GG
T ss_pred cccCceeeEEEEecCCCCEEEEeCCcc-------EEEeCCCCccceECcc
Confidence 2222222 233333 578999888543 222 223388988653
No 132
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.91 E-value=86 Score=33.80 Aligned_cols=246 Identities=13% Similarity=0.116 Sum_probs=119.4
Q ss_pred EEecCCC-CcccCeEEEEeCCCCeEEEcCCCCCCccceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCC
Q 005735 403 LVGGCDG-DSWLSTLELYLPSCDVIKTLKPMSSARSYASAAM--LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL 479 (680)
Q Consensus 403 v~GG~~~-~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~--~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~l 479 (680)
++|+++. ...--.++.||..++++..+......-...-++. -++.||+..........-..+..+..+.+.+.+...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~ 82 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV 82 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee
Confidence 4566542 2222246667889999987764322221122223 367899886643111122344455555788777655
Q ss_pred CCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCc-cEEEc---------cccc--ccc-cceEEEEE-C-CE
Q 005735 480 NGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIG-KWIRT---------RSML--QKR-FALAAAEL-N-GV 541 (680)
Q Consensus 480 p~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i---------~~~p--~~r-~~~s~~~~-~-g~ 541 (680)
+......+...+ +..+|+.-.. ...+.+|++... +-... .+-+ ... ..|.+... + ..
T Consensus 83 ~~~g~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 83 PSGGSSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp EESSSCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred ccCCCCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 533334444444 3446765321 245777877763 22111 1111 112 23333333 3 45
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCc--EEEec--cCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCC--CCc
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHY--WTKIA--NMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPR--LGS 613 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~--~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~--t~~ 613 (680)
+|+..- . .+.|++|+..... ..... .++..-.-..++.. +..+|++... .+.|.+|+.. +..
T Consensus 158 v~v~dl-G----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 158 VYVPDL-G----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEEET-T----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTE
T ss_pred EEEEec-C----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----CCcEEEEeecccCCc
Confidence 666531 1 3478888877655 65543 33433333344444 3578888754 3456666555 666
Q ss_pred EEEc---CCCCCC---c-cceEEEEE--CCEEEEEecccCCCcccceEEEEcC--C-CCeEecccCCC
Q 005735 614 WMSG---EPMKLS---R-GYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE--G-QGWEEINSRAI 669 (680)
Q Consensus 614 W~~v---~~lp~~---R-~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~--~-~~W~~v~~~p~ 669 (680)
++.+ +.+|.. . ..+.++.. +..||+.-... +.+-+|+. . ...+.+...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~------~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS------NSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT------TEEEEEEECTTTTTEEEEEEEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC------CEEEEEEEecCCCceEEEEEEeC
Confidence 6654 344332 1 22233333 44577765331 34666664 2 34444444443
No 133
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=80.77 E-value=60 Score=33.39 Aligned_cols=148 Identities=17% Similarity=0.240 Sum_probs=75.0
Q ss_pred CcEEECCCCCC-----CCccc-EEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEE
Q 005735 471 DEWTSRPSLNG-----TKGSL-AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVL 542 (680)
Q Consensus 471 ~~W~~l~~lp~-----~r~~~-a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~L 542 (680)
.-|+..+|+.. |--+. ...--.|.|+..||- ..++..|+++++.+..-. ...-+-|+++.- ++.|
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce
Confidence 35776666533 22221 222246788888862 357788999998765421 011133333332 3333
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEe-cc-----CCC---CCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKI-AN-----MNR---RRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v-~~-----~p~---~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+.|+-++ .+-++|..+.+-..+ .+ ... .++..+++ .+..-.+.||- +.+-.+++...+
T Consensus 172 -lsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala-~~edWlvCGgG------p~lslwhLrsse 238 (325)
T KOG0649|consen 172 -LSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA-VNEDWLVCGGG------PKLSLWHLRSSE 238 (325)
T ss_pred -eecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEe-ccCceEEecCC------CceeEEeccCCC
Confidence 4455554 577889888876655 11 111 12222333 34444444542 334566666655
Q ss_pred EEEcCCCCCCccceEEEEECCEEEEEe
Q 005735 614 WMSGEPMKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 614 W~~v~~lp~~R~~~s~v~~~~~lyV~G 640 (680)
-+.+- |.|-..+-+..+++.|++.|
T Consensus 239 ~t~vf--pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 239 STCVF--PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ceEEE--ecccceeEeeeecceEEEec
Confidence 54443 33333444445566666555
No 134
>PRK01742 tolB translocation protein TolB; Provisional
Probab=80.72 E-value=1e+02 Score=34.42 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=86.8
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEec-CCCCCccceEEEEeCCCC
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGG-GDGNSWHNTVESYSPAND 471 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG-~~~~~~~~~v~vyD~~t~ 471 (680)
....+++..+++....+ ....++++|..++.-+.+...+.... .....-+++.++++. .++. ..+|.+|..++
T Consensus 209 p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~ 282 (429)
T PRK01742 209 PAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGV---LNIYVMGANGG 282 (429)
T ss_pred ceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCc---EEEEEEECCCC
Confidence 44455665556655432 13468999998877666544332111 111112554444433 2322 35888999888
Q ss_pred cEEECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC-EEEEEcCCC
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYD 549 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~ 549 (680)
..+.+..-... .......-+|+ |+......+ ...++.+|..+..-..+.. ..... ...-+| .|++.++
T Consensus 283 ~~~~lt~~~~~-~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~~~-~~SpDG~~ia~~~~-- 352 (429)
T PRK01742 283 TPSQLTSGAGN-NTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RGYSA-QISADGKTLVMING-- 352 (429)
T ss_pred CeEeeccCCCC-cCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC---CCCCc-cCCCCCCEEEEEcC--
Confidence 77666432211 11122223555 444332222 2356666665553333211 11111 111244 4555443
Q ss_pred CCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccC
Q 005735 550 GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFD 596 (680)
Q Consensus 550 ~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~ 596 (680)
..++.+|+.++.++.+..... .......-+++.++++..+
T Consensus 353 -----~~i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 353 -----DNVVKQDLTSGSTEVLSSTFL--DESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred -----CCEEEEECCCCCeEEecCCCC--CCCceECCCCCEEEEEEcC
Confidence 357789999988876642211 1111222366666666543
No 135
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=79.67 E-value=18 Score=33.03 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=55.2
Q ss_pred EECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC---CCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC--
Q 005735 584 VLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP---MKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-- 658 (680)
Q Consensus 584 ~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~---lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-- 658 (680)
.+||-+|-+.-. .......|..||.++.+|+.+.. .........++.++|+|-++.-........-++|+.+..
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 457777776654 23345678999999999998754 234566678888999999987554432234567887644
Q ss_pred CCeEec
Q 005735 659 QGWEEI 664 (680)
Q Consensus 659 ~~W~~v 664 (680)
..|.+.
T Consensus 82 ~~Wsk~ 87 (129)
T PF08268_consen 82 QEWSKK 87 (129)
T ss_pred ceEEEE
Confidence 679764
No 136
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=79.32 E-value=79 Score=32.42 Aligned_cols=215 Identities=17% Similarity=0.222 Sum_probs=103.2
Q ss_pred CCCeEEEcC---CCC--CCccceEEEEE--CCEEEEEe--cCCCCCc--cceEEEEeCC-CCcEEECCCCCCC-------
Q 005735 422 SCDVIKTLK---PMS--SARSYASAAML--NGELYIFG--GGDGNSW--HNTVESYSPA-NDEWTSRPSLNGT------- 482 (680)
Q Consensus 422 ~t~~W~~l~---~mp--~~R~~~s~v~~--~~~IyV~G--G~~~~~~--~~~v~vyD~~-t~~W~~l~~lp~~------- 482 (680)
.-.+|.... ..+ ..+....+.+. +++|+++. +...... ....+..... -.+|.....++..
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 345798653 222 12222222322 78999886 2222111 1111244443 4689876543311
Q ss_pred -CcccEEEEECCEEEEEccCCCCcccceEEEEeCCC-ccEEEccccccc-c-cceEEEEE-CCEEEEEcCCCCCCcCcee
Q 005735 483 -KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI-GKWIRTRSMLQK-R-FALAAAEL-NGVLYATGGYDGNEYMNSA 557 (680)
Q Consensus 483 -r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t-~~W~~i~~~p~~-r-~~~s~~~~-~g~Lyv~GG~~~~~~~~~v 557 (680)
-.......-+|.+++..-............|..+. .+|......+.. . ..++.+.. +|+|+++-...... ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 11112333478877762111111233344455554 469887665432 2 23333333 67898886543111 223
Q ss_pred EEEeCC-CCcEEEec--cCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCC----ccceEE
Q 005735 558 ERFDPR-EHYWTKIA--NMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLS----RGYLGA 629 (680)
Q Consensus 558 ~~yD~~-t~~W~~v~--~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~----R~~~s~ 629 (680)
..+... -.+|.... .+|.......++.+ ++.++++.........-.+.+-.-...+|.....+... -.+.++
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~ 265 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSL 265 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCee
Confidence 333333 35799865 45555544444443 66888777632221111233333347799876544332 355666
Q ss_pred EEE-CCEEEE
Q 005735 630 AVV-KEAIYV 638 (680)
Q Consensus 630 v~~-~~~lyV 638 (680)
+.. +++|+|
T Consensus 266 ~~~~dg~l~i 275 (275)
T PF13088_consen 266 TQLPDGKLYI 275 (275)
T ss_dssp EEEETTEEEE
T ss_pred EEeCCCcCCC
Confidence 666 568886
No 137
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.21 E-value=38 Score=39.11 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=66.7
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccc--------cceEEEEECCEEEEEcCCCCCCcCcee
Q 005735 488 GATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKR--------FALAAAELNGVLYATGGYDGNEYMNSA 557 (680)
Q Consensus 488 ~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r--------~~~s~~~~~g~Lyv~GG~~~~~~~~~v 557 (680)
-++.++.||+.... ..++.+|..+++ |+.-...+... .....+..+++||+.. .+ ..+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~d-----g~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LD-----ARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CC-----CEE
Confidence 35679999996432 358899998864 87654322111 1123456688888743 22 368
Q ss_pred EEEeCCCCc--EEEec-cCCCC-CceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC--cEEE
Q 005735 558 ERFDPREHY--WTKIA-NMNRR-RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMS 616 (680)
Q Consensus 558 ~~yD~~t~~--W~~v~-~~p~~-r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~--~W~~ 616 (680)
+.+|..+++ |+.-. ..... ....+-++.+++||+-....+......+..||.++. .|+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 899998775 76532 11111 112233456887766432211123456889999886 4653
No 138
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.04 E-value=67 Score=32.92 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=84.5
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~ 477 (680)
++...+.-|.+ ..+-.+||..+....--.-.-.-..-+..+.++.-|..||.+ ..+.++|..|++--+-
T Consensus 28 dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD-----k~v~vwDV~TGkv~Rr- 96 (307)
T KOG0316|consen 28 DGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD-----KAVQVWDVNTGKVDRR- 96 (307)
T ss_pred CCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCC-----ceEEEEEcccCeeeee-
Confidence 55555555532 245556666655332211110001112233455556666654 4688999998864221
Q ss_pred CCCCCCcccE----EEEEC--CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCC
Q 005735 478 SLNGTKGSLA----GATID--NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGN 551 (680)
Q Consensus 478 ~lp~~r~~~a----~~v~~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~ 551 (680)
-..|. ++.++ ..+.+-|+.+ ..+..+|-.+.+.+.+.-+-..+.+-..+.+.+...+.|-.++
T Consensus 97 -----~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG- 165 (307)
T KOG0316|consen 97 -----FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG- 165 (307)
T ss_pred -----cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC-
Confidence 12222 23333 3466666654 4567889888888888877888888888888999888877665
Q ss_pred CcCceeEEEeCCCCc
Q 005735 552 EYMNSAERFDPREHY 566 (680)
Q Consensus 552 ~~~~~v~~yD~~t~~ 566 (680)
.+-.||.+.++
T Consensus 166 ----tvRtydiR~G~ 176 (307)
T KOG0316|consen 166 ----TVRTYDIRKGT 176 (307)
T ss_pred ----cEEEEEeecce
Confidence 56788877654
No 139
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=79.01 E-value=87 Score=35.48 Aligned_cols=235 Identities=18% Similarity=0.221 Sum_probs=110.8
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCC-----CeEEEcCCCCCCccce-EEEEECCEEEEEecCCCCCccceEEE
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSC-----DVIKTLKPMSSARSYA-SAAMLNGELYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t-----~~W~~l~~mp~~R~~~-s~v~~~~~IyV~GG~~~~~~~~~v~v 465 (680)
+..+.+.|.=++.||++. ++..||... ...+++-+.-...... +..+-++.|+|+-|.. ..-+
T Consensus 172 al~~Dp~GaR~~sGs~Dy-----~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a------qakl 240 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDY-----TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA------QAKL 240 (641)
T ss_pred EeeecCCCceeeeccccc-----eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc------ceeE
Confidence 345666778888888763 344454432 2344443221111110 1111378888888853 4567
Q ss_pred EeCCCCcEEECC-------CCCCCCcccEEEEE------CCEEEEEccCCCCcccceEEEEeCCCcc--EEEc--ccccc
Q 005735 466 YSPANDEWTSRP-------SLNGTKGSLAGATI------DNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRT--RSMLQ 528 (680)
Q Consensus 466 yD~~t~~W~~l~-------~lp~~r~~~a~~v~------~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i--~~~p~ 528 (680)
||-..-+|.++. +|....++-+...+ +...|+--+.++. +-.+|...-+ -+.+ .++..
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt-----lRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT-----LRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc-----EEEEecCCchhheeEEeeccCCC
Confidence 777777776652 23222222222222 1224444443322 2233332211 1111 24445
Q ss_pred cccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC-----CCCceeEEE--EECCEEEEEeccCCCC
Q 005735 529 KRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-----RRRGCHSLA--VLNGKLYALGGFDGSA 599 (680)
Q Consensus 529 ~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p-----~~r~~~s~v--~~~~~IyviGG~~~~~ 599 (680)
.|...+.|.+ +++++..|-.++ +|.+||. +.|..-+.+- .+...-+++ ..++++++--|.++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DG-----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-- 386 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDG-----SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-- 386 (641)
T ss_pred cccCceeeecCCCcchhhhcccCC-----ceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC--
Confidence 6666666666 566744433343 5667765 4444333221 111112222 23666666555543
Q ss_pred CCCeEEEEeCCC-----CcEEEcCCCCCCccceEEE-EECCEEEEEecccCCCcccceEEEEcC
Q 005735 600 MVPSIEVYDPRL-----GSWMSGEPMKLSRGYLGAA-VVKEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 600 ~~~~v~~yD~~t-----~~W~~v~~lp~~R~~~s~v-~~~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.+-++|++. +.|.-++ .+....-++ .-+++|++.|-...++.....+.+|++
T Consensus 387 ---tLKvWDLrq~kkpL~~~tgL~---t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 387 ---TLKVWDLRQFKKPLNVRTGLP---TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred ---ceeeeeccccccchhhhcCCC---ccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 244555443 3444443 222222222 237888888866555555556777765
No 140
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=78.71 E-value=1.9e+02 Score=36.49 Aligned_cols=237 Identities=11% Similarity=0.056 Sum_probs=123.5
Q ss_pred ceEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCC-C---------C--CccceEEEEE--CCEEEEEecCC
Q 005735 391 DELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPM-S---------S--ARSYASAAML--NGELYIFGGGD 455 (680)
Q Consensus 391 ~~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~m-p---------~--~R~~~s~v~~--~~~IyV~GG~~ 455 (680)
....+.. ++.|||.-- ..+.+.++|+....-..+... . . -...+.+++. ++.|||....+
T Consensus 571 ~gvavd~~~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 4455543 577777642 234688888876544343321 0 1 1223555554 46789876543
Q ss_pred CCCccceEEEEeCCCCcEEECCCC-------CC-------CCcc-cEEEEE--CCEEEEEccCCCCcccceEEEEeCCCc
Q 005735 456 GNSWHNTVESYSPANDEWTSRPSL-------NG-------TKGS-LAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 456 ~~~~~~~v~vyD~~t~~W~~l~~l-------p~-------~r~~-~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
..+.++|+.++.-+.+..- .. .-.. ...++- ++.+||.... .+.+++||+.++
T Consensus 646 -----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g 715 (1057)
T PLN02919 646 -----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDG 715 (1057)
T ss_pred -----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCC
Confidence 4578888877765544211 00 0011 122332 5789987532 356888888877
Q ss_pred cEEEcccc----------c--c-cccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc----CCC----
Q 005735 519 KWIRTRSM----------L--Q-KRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN----MNR---- 575 (680)
Q Consensus 519 ~W~~i~~~----------p--~-~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~----~p~---- 575 (680)
....+..- . . ......++.. ++.||+....+ +.|.+||+.++....+.. .+.
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCccccc
Confidence 65432110 0 0 0111122332 34599875433 578999988765432210 000
Q ss_pred ----------CC--ceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCC------------CccceEEE
Q 005735 576 ----------RR--GCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL------------SRGYLGAA 630 (680)
Q Consensus 576 ----------~r--~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~------------~R~~~s~v 630 (680)
.. .-.+++. -++.|||.... .+.|.+||+.++....+..... -....+++
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 00 1123333 25678888654 3578999999888776543211 01223344
Q ss_pred EE-CCEEEEEecccCCCcccceEEEEcCC
Q 005735 631 VV-KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 631 ~~-~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+- +++|||.-..++ .|.+++..
T Consensus 866 vd~dG~lyVaDt~Nn------~Irvid~~ 888 (1057)
T PLN02919 866 LGENGRLFVADTNNS------LIRYLDLN 888 (1057)
T ss_pred EeCCCCEEEEECCCC------EEEEEECC
Confidence 33 678888764332 45566554
No 141
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=78.54 E-value=1.9e+02 Score=36.45 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=84.1
Q ss_pred EEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCC----------C--CCCccc-EEEEE-C-CEEEEEccCC
Q 005735 440 SAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL----------N--GTKGSL-AGATI-D-NKIFAIGGGN 502 (680)
Q Consensus 440 s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~l----------p--~~r~~~-a~~v~-~-gkIyV~GG~~ 502 (680)
.+++. ++.|||....+ +.+++||..++.......- . ...... +.++. + +.|||....
T Consensus 687 gVa~dp~~g~LyVad~~~-----~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~- 760 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQ-----HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE- 760 (1057)
T ss_pred EEEEecCCCeEEEEECCC-----CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-
Confidence 34443 67899876433 4688898877755432110 0 000111 22222 3 459988543
Q ss_pred CCcccceEEEEeCCCccEEEcc--c--ccc--------------c-ccce-EEEE-ECCEEEEEcCCCCCCcCceeEEEe
Q 005735 503 GLECFSDVEMLDLDIGKWIRTR--S--MLQ--------------K-RFAL-AAAE-LNGVLYATGGYDGNEYMNSAERFD 561 (680)
Q Consensus 503 ~~~~~~~ve~yD~~t~~W~~i~--~--~p~--------------~-r~~~-s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD 561 (680)
.+.+.+||+.++....+. . .+. . ...+ +++. -+|.|||....+ ..|.+||
T Consensus 761 ----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD 831 (1057)
T PLN02919 761 ----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLD 831 (1057)
T ss_pred ----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEE
Confidence 357889998876533211 0 000 0 0111 2222 257799876443 4789999
Q ss_pred CCCCcEEEeccCCCC------------CceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 562 PREHYWTKIANMNRR------------RGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 562 ~~t~~W~~v~~~p~~------------r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+.++....+...... ...+.+++. +++|||....+ +.|.++|+.++.
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 998887766432110 112233333 67899986543 568899988765
No 142
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.49 E-value=1.5e+02 Score=35.19 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=84.0
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
..+++...|.-+.+|+. .+..+.+|+-.+....--..-...|.......-+|.+++.|+.++ .|-+||..+
T Consensus 311 ~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~S 381 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----KVKVWNTQS 381 (893)
T ss_pred eEEEecccCCEEEEcCC----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----cEEEEeccC
Confidence 34445555666667763 255677776665553322222233333333334889999998774 467777765
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC--CEEEEEc
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN--GVLYATG 546 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~--g~Lyv~G 546 (680)
+.--.. .......++++.+ .++..+....++ .|-.+|+...+=-..-..|. +..++++.++ |.|++.|
T Consensus 382 gfC~vT--FteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 382 GFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred ceEEEE--eccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEee
Confidence 422111 1112223333222 455444433333 24455655443222212233 3445566665 8899998
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEe
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
+.+. -.|++++.++++-..+
T Consensus 454 ~~d~----F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 454 AQDS----FEIFVWSVQTGQLLDI 473 (893)
T ss_pred ccce----EEEEEEEeecCeeeeh
Confidence 8663 3688899888876555
No 143
>PRK01742 tolB translocation protein TolB; Provisional
Probab=78.25 E-value=1.2e+02 Score=33.83 Aligned_cols=206 Identities=11% Similarity=0.039 Sum_probs=94.7
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECC
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN 493 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g 493 (680)
..+++.|.....-..+...... ...-...-+++.+++...... ...++++|..+++-+.+...+.. .......-+|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~-v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQP-LMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGH-NGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCc-cccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCc-cCceeECCCC
Confidence 5677777655432333221111 111111124444444443321 24688999988776665544321 1112222356
Q ss_pred EEEEEcc-CCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEec
Q 005735 494 KIFAIGG-GNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGV-LYATGGYDGNEYMNSAERFDPREHYWTKIA 571 (680)
Q Consensus 494 kIyV~GG-~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 571 (680)
+.++++. .++. .+++.+|+.++....+..-...-.. ....-+|+ |+.....++. ..+|.++.....-+.+.
T Consensus 260 ~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~~~~~~-~~wSpDG~~i~f~s~~~g~---~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 260 SRLAFASSKDGV---LNIYVMGANGGTPSQLTSGAGNNTE-PSWSPDGQSILFTSDRSGS---PQVYRMSASGGGASLVG 332 (429)
T ss_pred CEEEEEEecCCc---EEEEEEECCCCCeEeeccCCCCcCC-EEECCCCCEEEEEECCCCC---ceEEEEECCCCCeEEec
Confidence 5444433 2222 3588889888876665432211111 11122444 5554332222 36777777665444332
Q ss_pred cCCCCCceeEEEEECCE-EEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEeccc
Q 005735 572 NMNRRRGCHSLAVLNGK-LYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVK 643 (680)
Q Consensus 572 ~~p~~r~~~s~v~~~~~-IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~ 643 (680)
. .... ....-+++ |++.++ ..++.+|+.+..+..+..-.. .......-+++.+++++..
T Consensus 333 ~---~~~~-~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 333 G---RGYS-AQISADGKTLVMING-------DNVVKQDLTSGSTEVLSSTFL--DESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred C---CCCC-ccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEecCCCC--CCCceECCCCCEEEEEEcC
Confidence 1 1111 11122444 444433 347789999988876642111 1111112266677776543
No 144
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.94 E-value=47 Score=38.36 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=68.5
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCCC--------cccEEEEECCEEEEEccCCCCcccc
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTK--------GSLAGATIDNKIFAIGGGNGLECFS 508 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~r--------~~~a~~v~~gkIyV~GG~~~~~~~~ 508 (680)
.+.++.++.||+.... ..++.+|..|+ .|+.-...+... ...+.++.+++||+... ..
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DA 130 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CC
Confidence 3446679999986542 25889998875 587644332111 11234566888887432 23
Q ss_pred eEEEEeCCCcc--EEEcc-cccc-cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEE
Q 005735 509 DVEMLDLDIGK--WIRTR-SMLQ-KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTK 569 (680)
Q Consensus 509 ~ve~yD~~t~~--W~~i~-~~p~-~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~ 569 (680)
.+..+|..+++ |+.-. .... .....+-++.+++||+-...........+..||.++++ |+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 58899998875 76532 2211 11223345668888774322111234468888988764 653
No 145
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.47 E-value=28 Score=37.64 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=63.6
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCC----CCCccceEEEEeCCCCcE
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGD----GNSWHNTVESYSPANDEW 473 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~----~~~~~~~v~vyD~~t~~W 473 (680)
++|||.-...... ...++++|..+++. ++.++.+...+.+..- +..+|+..-+- .+...+-+++||..|-+-
T Consensus 3 ~rvyV~D~~~~~~-~~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 3 HRVYVQDPVFFHM-TSRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TEEEEEE-GGGGS-SEEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred cEEEEECCccccc-cceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 4566655421111 25788999888774 3334444444433222 56788776432 234467799999999854
Q ss_pred EECCCCCCC-Ccc------cEEEEECCE-EEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 474 TSRPSLNGT-KGS------LAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 474 ~~l~~lp~~-r~~------~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
..--.+|.. |.. .....-+|+ +||+- .....+|-+.|++.++.-.
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceee
Confidence 322223322 332 223333555 77761 2245678999999998743
No 146
>smart00284 OLF Olfactomedin-like domains.
Probab=76.60 E-value=1e+02 Score=32.12 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=97.9
Q ss_pred CCEEEEEecCCCCcccCeEEEEe----CCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYL----PSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW 473 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd----~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W 473 (680)
++++|++.+.. .....+..|. ...+.+.+.-.+|.+-.+.+.++.+|.+|.--.. ...+.+||..+++-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-----CccEEEEECCCCcE
Confidence 36788877653 1123455553 2333333333466667778888899999985432 35699999999876
Q ss_pred EECCCCCCC----Cc--------ccEEEEECCEEEEEccCCCCcccceEEEEeCCCc----cEEEcccccccccceEEEE
Q 005735 474 TSRPSLNGT----KG--------SLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG----KWIRTRSMLQKRFALAAAE 537 (680)
Q Consensus 474 ~~l~~lp~~----r~--------~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~----~W~~i~~~p~~r~~~s~~~ 537 (680)
.....+|.+ +. ..-.++-++-|+|+=........-.+-..|+.+- +|.. ..+....+ .+..
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSAS-NAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCccccc-ccEE
Confidence 544444432 11 1223444555777633322211122335666553 5654 23332222 2333
Q ss_pred ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec-cCCCCCceeEEEEE---CCEEEEEe
Q 005735 538 LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIA-NMNRRRGCHSLAVL---NGKLYALG 593 (680)
Q Consensus 538 ~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~~---~~~IyviG 593 (680)
+=|.||++-... .....-.+.||+.+++=..+. +++.+...+++.-+ +.+||+..
T Consensus 184 vCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 184 ICGILYVTRSLG-SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EeeEEEEEccCC-CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 346889985311 112234678999887633321 22333334455544 56788874
No 147
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=75.59 E-value=1e+02 Score=31.83 Aligned_cols=224 Identities=12% Similarity=0.133 Sum_probs=107.0
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
-.+..++++++.+..+|. ..+..||..++.=..+...-.++-+-+++-+ +++-..-||.++ ++-++|
T Consensus 43 VNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWd 111 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWD 111 (311)
T ss_pred eeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEe
Confidence 345667778888888885 3588899887753222222233334444433 677777787764 456666
Q ss_pred CCCCcEEECCCCCCCCcccEEEEECC--EEEEEccCCCCcccceEEEEeCCCccEEEcccccc-cccceEEEEECCEEEE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATIDN--KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYA 544 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~~g--kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~-~r~~~s~~~~~g~Lyv 544 (680)
.+.-.-++.-..+.+.. ..+..-+ .+++ |- ....+.++|+..+...... +|+ .-+-.++++.-+.-++
T Consensus 112 lR~~~~qR~~~~~spVn--~vvlhpnQteLis-~d-----qsg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 112 LRSLSCQRNYQHNSPVN--TVVLHPNQTELIS-GD-----QSGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred ccCcccchhccCCCCcc--eEEecCCcceEEe-ec-----CCCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEE
Confidence 66522222111111111 1122223 2433 22 2235789999988754432 222 2223334444333334
Q ss_pred EcCCCCCCcCceeEEEeCCCCc-EEEeccCC--CCCceeEE-EEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 545 TGGYDGNEYMNSAERFDPREHY-WTKIANMN--RRRGCHSL-AVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~-W~~v~~~p--~~r~~~s~-v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
+++.+. ...++++.-+++ -+.+.++- ..+..|.+ +.+ +++.++..+.+ .++.+++.++. .+.--
T Consensus 183 ~a~nnk----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd-----ktv~iwn~~~~-~kle~ 252 (311)
T KOG0315|consen 183 AAANNK----GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD-----KTVKIWNTDDF-FKLEL 252 (311)
T ss_pred EEecCC----ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC-----ceEEEEecCCc-eeeEE
Confidence 444332 246677665532 12222211 22223332 223 66655555543 45778877665 22111
Q ss_pred CCC-CCccceEEEEE-CCEEEEEeccc
Q 005735 619 PMK-LSRGYLGAAVV-KEAIYVIGGVK 643 (680)
Q Consensus 619 ~lp-~~R~~~s~v~~-~~~lyV~GG~~ 643 (680)
.+. .-|....++.- ++.-+|.|+.+
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCC
Confidence 111 12455555555 45555555544
No 148
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=67 Score=33.09 Aligned_cols=102 Identities=20% Similarity=0.395 Sum_probs=60.0
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCcEEE----------------CCCCCCCCcccEEEEECCEEEEEccCCCCcccceE
Q 005735 447 ELYIFGGGDGNSWHNTVESYSPANDEWTS----------------RPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDV 510 (680)
Q Consensus 447 ~IyV~GG~~~~~~~~~v~vyD~~t~~W~~----------------l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~v 510 (680)
+-++-||.+.. -.+|.||. .+|.. +|....++...+++..++++++.
T Consensus 176 krlvSgGcDn~---VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw------------ 238 (299)
T KOG1332|consen 176 KRLVSGGCDNL---VKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW------------ 238 (299)
T ss_pred ceeeccCCccc---eeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE------------
Confidence 55777887642 24555554 35632 24555677888888888888776
Q ss_pred EEEeCCCccEEEc--ccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCC-CCcEEEecc
Q 005735 511 EMLDLDIGKWIRT--RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPR-EHYWTKIAN 572 (680)
Q Consensus 511 e~yD~~t~~W~~i--~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~-t~~W~~v~~ 572 (680)
.-+.+...|+.. .+.|.+.+..+- .+-|.++.++|-+ +.+.+|-.. +++|.+++.
T Consensus 239 -t~~~e~e~wk~tll~~f~~~~w~vSW-S~sGn~LaVs~Gd-----Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 -TKDEEYEPWKKTLLEEFPDVVWRVSW-SLSGNILAVSGGD-----NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -EecCccCcccccccccCCcceEEEEE-eccccEEEEecCC-----cEEEEEEeCCCCcEEEccc
Confidence 233455677653 456665554443 3344455554433 245566544 468998864
No 149
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.86 E-value=1.5e+02 Score=33.38 Aligned_cols=191 Identities=23% Similarity=0.293 Sum_probs=94.6
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC--eEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD--VIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
...+.+++.+++-|..+ ..+.++|...+ ..+.+..+.... ++++.. .+.+++.|+.+ .+|.++|.
T Consensus 208 ~~~fs~d~~~l~s~s~D-----~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~ 275 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDD-----KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDV 275 (456)
T ss_pred eeEECCCCcEEEEecCC-----ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEec
Confidence 34455567655555433 35788888433 334444433333 333322 45888888876 36888888
Q ss_pred CCCcEEECCCCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEE---EcccccccccceEEEEE-CCEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWI---RTRSMLQKRFALAAAEL-NGVL 542 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~---~i~~~p~~r~~~s~~~~-~g~L 542 (680)
.+.+=.+. +..-...-.++. -++.+++.+..+ ..+.+||..++.-. .+.....+.....+... +++.
T Consensus 276 ~~~~~~~~--l~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 276 RTGECVRK--LKGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred cCCeEEEe--eeccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 88543222 111111222222 266777776543 34678999988743 22222222211222222 4444
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEe-ccCCC-CCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKI-ANMNR-RRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v-~~~p~-~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
.+.+..+ +.+-.||+....-... ..... .++.+..+.. +++..+.|+.+ ..|.++|+.+
T Consensus 349 ll~~~~d-----~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d-----~~v~~~~~~s 410 (456)
T KOG0266|consen 349 LLSASLD-----RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED-----GSVYVWDSSS 410 (456)
T ss_pred EEEecCC-----CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC-----ceEEEEeCCc
Confidence 4444333 2455666664432211 11111 1333333333 56666666543 4578888876
No 150
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=74.40 E-value=1.1e+02 Score=31.42 Aligned_cols=185 Identities=12% Similarity=0.155 Sum_probs=89.5
Q ss_pred CCEEEEEc--cCCCC-cccceE-EEEeCC-CccEEEccccccc------ccce--EEEEECCEEEEEcCCCCCCcCceeE
Q 005735 492 DNKIFAIG--GGNGL-ECFSDV-EMLDLD-IGKWIRTRSMLQK------RFAL--AAAELNGVLYATGGYDGNEYMNSAE 558 (680)
Q Consensus 492 ~gkIyV~G--G~~~~-~~~~~v-e~yD~~-t~~W~~i~~~p~~------r~~~--s~~~~~g~Lyv~GG~~~~~~~~~v~ 558 (680)
+|+|+++- +.... .....+ +....+ -.+|+....++.. .... .+..-+|++++..-...........
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~ 137 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFV 137 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEE
Confidence 88888885 22111 111111 244444 3589877544322 1111 1333488888872111111122344
Q ss_pred EEeCC-CCcEEEeccCCCC-CceeEEEE-E-CCEEEEEeccCCCCCCCeEEEEeCC-CCcEEEcC--CCCCCccceEEEE
Q 005735 559 RFDPR-EHYWTKIANMNRR-RGCHSLAV-L-NGKLYALGGFDGSAMVPSIEVYDPR-LGSWMSGE--PMKLSRGYLGAAV 631 (680)
Q Consensus 559 ~yD~~-t~~W~~v~~~p~~-r~~~s~v~-~-~~~IyviGG~~~~~~~~~v~~yD~~-t~~W~~v~--~lp~~R~~~s~v~ 631 (680)
.|... -.+|+.....+.. .......+ . ++.|+++.-..... .....+..+ -.+|.... .+|.+.....++.
T Consensus 138 ~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~ 215 (275)
T PF13088_consen 138 YYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVR 215 (275)
T ss_dssp EEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEE
T ss_pred EEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceecccCcccCCceEEE
Confidence 45444 4569988766432 34443333 3 67888886542111 233444444 35899865 4555555444444
Q ss_pred E-CCEEEEEecccCCCcccceEEEEcCCCCeEecccCCCCC---cceeEEE
Q 005735 632 V-KEAIYVIGGVKNGSEIVDTVERFKEGQGWEEINSRAIGK---RCFMSVV 678 (680)
Q Consensus 632 ~-~~~lyV~GG~~~~~~~~~~ve~y~~~~~W~~v~~~p~~~---r~~~sa~ 678 (680)
+ ++.++++.........+.-....+.+.+|.....+..+. -.|.+.+
T Consensus 216 ~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~ 266 (275)
T PF13088_consen 216 LSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLT 266 (275)
T ss_dssp CTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEE
T ss_pred cCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeE
Confidence 4 678888887322222222122223348898765555443 4454444
No 151
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.30 E-value=60 Score=35.77 Aligned_cols=233 Identities=13% Similarity=-0.005 Sum_probs=103.8
Q ss_pred cCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC-ccceEEEEECCEEEEE-ecCCCCCccceEEEEeCCCCcE
Q 005735 396 DPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA-RSYASAAMLNGELYIF-GGGDGNSWHNTVESYSPANDEW 473 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~-R~~~s~v~~~~~IyV~-GG~~~~~~~~~v~vyD~~t~~W 473 (680)
..++.-+||+|-. .....++..|..+++-.+|...+.. ..+..++.-+..+|-+ .+ ..++..|..|.+=
T Consensus 44 t~dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 44 TDDGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEE 114 (386)
T ss_dssp -TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--E
T ss_pred CCCCCEEEEEecc--CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcE
Confidence 4467666776642 2345689999999999999876643 3333333235666444 33 3688888888876
Q ss_pred EECCCCCCCCcccEEEEE--CCEEEEEccC----CC--------------CcccceEEEEeCCCccEEEcccccccccce
Q 005735 474 TSRPSLNGTKGSLAGATI--DNKIFAIGGG----NG--------------LECFSDVEMLDLDIGKWIRTRSMLQKRFAL 533 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~--~gkIyV~GG~----~~--------------~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~ 533 (680)
+.+...|..-......++ ++..++ |=. +. ......+...|+.+++.+.+-.-..= .+|
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~w-lgH 192 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDW-LGH 192 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEE
T ss_pred EEEEECCcccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcc-ccC
Confidence 666555544433333333 233322 110 00 01233566777777776544211100 011
Q ss_pred EE-EEECCEEEEE---cCCCCCCcCceeEEEeCCCCcEEEec-cCCCCCceeEEEEECCEEEEE-eccCCCCCCCeEEEE
Q 005735 534 AA-AELNGVLYAT---GGYDGNEYMNSAERFDPREHYWTKIA-NMNRRRGCHSLAVLNGKLYAL-GGFDGSAMVPSIEVY 607 (680)
Q Consensus 534 s~-~~~~g~Lyv~---GG~~~~~~~~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~~~~~Iyvi-GG~~~~~~~~~v~~y 607 (680)
.. .-.+..+.++ |.++ .+-..||..+........+- .++.....|-.-..+|..+.+ +...+ ....-+..|
T Consensus 193 ~~fsP~dp~li~fCHEGpw~--~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~ 269 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWD--LVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGY 269 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TT--TSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE
T ss_pred cccCCCCCCEEEEeccCCcc--eeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC-CCceEEEee
Confidence 10 1113445555 2222 23347899998876666663 333333445444445543333 33222 222247788
Q ss_pred eCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccC
Q 005735 608 DPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 608 D~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
|+.+..=+.+..+| +..|-+...+++++|--|.+.
T Consensus 270 d~~t~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 270 DPDTGERRRLMEMP--WCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp -TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred CCCCCCceEEEeCC--ceeeeEEcCCCCEEEecCCCC
Confidence 99887544454443 567777777888888767543
No 152
>PRK02268 hypothetical protein; Provisional
Probab=72.47 E-value=8 Score=36.39 Aligned_cols=99 Identities=12% Similarity=0.186 Sum_probs=55.9
Q ss_pred hhcccCCCcCccchhccCCCCcEEEEe----cC----CCeEeeEEEeccCCCccccCCCCCCCCCCCCCCceEEEEEeee
Q 005735 36 KQLFGLPAQHFLYVRKVDPGLPLFLFN----YT----DRKLHGIFEAASPGMMNINPYGWTDGSERTSYPAQVQIRVRMQ 107 (680)
Q Consensus 36 ~~~fgl~~~~~~~v~~i~~g~~lfl~~----~~----~~~l~g~~~a~s~g~~~~~~~a~~~~~~~~~~paqv~~~~~~~ 107 (680)
..+.|++.++...++++|||.-|.-|- +. ....-||++.+++-..- ..-+ ..-||.=+ +..
T Consensus 20 ~gf~qv~hgK~apl~RmkpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq-----~~m~--~~f~P~Rr----~v~ 88 (141)
T PRK02268 20 GGFMQVCHGKAAPLRRMKPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ-----VEMA--PGFIPWRR----DVD 88 (141)
T ss_pred CCEEEeCCCccchhhcCCCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe-----cccC--CCceeEEE----Eee
Confidence 356699999999999999999998775 23 33445566655542222 1101 12234333 333
Q ss_pred ecCCCCCcchhHHhhcccC------CCCCC---CCCCHHHHHHHHHh
Q 005735 108 CQPLNEEKFKPIIAANYYT------PHHFW---FELDHSQASKLIAL 145 (680)
Q Consensus 108 ~~pl~e~~~~~~i~~n~~~------~~~f~---~~l~~~q~~~l~~l 145 (680)
..|..|-.|+++|-.=-+- ..+|+ ||++....+-+.+.
T Consensus 89 ~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~fr~g~~eI~e~Df~~I~~a 135 (141)
T PRK02268 89 YYPCAETPIRPLLDHLDFTEDRKNWGYQFRFGHFEISKHDFETIASA 135 (141)
T ss_pred EeecCccchHHhhcccceeeCcchhhHhhcCCcEecCHHHHHHHHHH
Confidence 3356777888886531111 13455 55666555544443
No 153
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=72.41 E-value=92 Score=34.54 Aligned_cols=130 Identities=19% Similarity=0.264 Sum_probs=69.6
Q ss_pred ccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEe
Q 005735 485 SLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFD 561 (680)
Q Consensus 485 ~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD 561 (680)
..+++.. ||.||..|--+ ..+-+||+..+. .+...|..-..-....+ ||..++++--+ .+|.+||
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEE
Confidence 3444444 66777766433 346689998877 44444442111122222 55544444322 2488899
Q ss_pred CCCCcEEEeccC--CCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECC
Q 005735 562 PREHYWTKIANM--NRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 634 (680)
Q Consensus 562 ~~t~~W~~v~~~--p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~ 634 (680)
++... .++.. +......+ ..+ -|...+++|.+ -.|+.|+..+++|+.+..++..-+-...+-+++
T Consensus 418 LRKl~--n~kt~~l~~~~~v~s-~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 418 LRKLK--NFKTIQLDEKKEVNS-LSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ehhhc--ccceeecccccccee-EEEcCCCCeEEeecce-----eEEEEEecccccceeeehhhhcccccceeeecc
Confidence 87654 22222 22211112 222 35555666532 357888999999999987765544444555543
No 154
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.38 E-value=91 Score=35.78 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEE-
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWI- 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~- 521 (680)
.-.||+.|-. +.+|++|...++|-..-.... ...-++.+ -..++++||.+ ..++.+|+.+..--
T Consensus 145 scDly~~gsg------~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 145 SCDLYLVGSG------SEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTED-----GVVEFWDPRDKSRVG 211 (703)
T ss_pred CccEEEeecC------cceEEEEcccccccccccccc--ccceeeeecCccceEEecccC-----ceEEEecchhhhhhe
Confidence 3457776643 479999999999843222221 22222333 34588888755 35788888765421
Q ss_pred ------Ecccccccc--cceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 522 ------RTRSMLQKR--FALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 522 ------~i~~~p~~r--~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
.+...|..- ...++..+ ++.|-+.-|.. ...+++||+.+.+=..+
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASKPLLV 265 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCCceee
Confidence 122223221 12233334 43444433432 23689999987653333
No 155
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.66 E-value=1.8e+02 Score=32.36 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=115.4
Q ss_pred hhhhhhhccc--ccceEEE--cCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCC-C-C-CC--ccceEEEEECCEEE
Q 005735 379 KECMYEKLLE--SSDELHL--DPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP-M-S-SA--RSYASAAMLNGELY 449 (680)
Q Consensus 379 ~~~~~~~p~~--~~~~~~v--~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~-m-p-~~--R~~~s~v~~~~~Iy 449 (680)
|........+ .+-.+.+ ...+.-+++|-.. .+..=+---++|..... . . .. ....++...++..|
T Consensus 77 W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~ 150 (398)
T PLN00033 77 WEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQ------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGW 150 (398)
T ss_pred cEEeecCCCCCCceEEEEeccCCCCEEEEEcCCC------EEEEEcCCCCCceECccCcccccccccceeeeEEECCEEE
Confidence 6555433333 3444555 3356777777642 12222233457887531 1 1 11 12345555678888
Q ss_pred EEecCCCCCccceEEEEeCCCCcEEECCCCCC-CCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEccccc
Q 005735 450 IFGGGDGNSWHNTVESYSPANDEWTSRPSLNG-TKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML 527 (680)
Q Consensus 450 V~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~-~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p 527 (680)
++|-.. .++.=.-.-.+|+.++..+. +-.......+ ++.++++|... .++.-+-.-.+|+.+...+
T Consensus 151 ~vG~~G------~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G------~v~~S~D~G~tW~~~~~~t 218 (398)
T PLN00033 151 IIGKPA------ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG------AIYVTSNAGRNWKAAVEET 218 (398)
T ss_pred EEcCce------EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc------eEEEECCCCCCceEccccc
Confidence 886432 23333334578998754221 1112223334 45577776321 2333333446898762111
Q ss_pred ----ccc--------------cceEEE-EECCEEEEEcCCCCCCcCceeEE-EeCCCCcEEEeccCCCCCceeEEEEECC
Q 005735 528 ----QKR--------------FALAAA-ELNGVLYATGGYDGNEYMNSAER-FDPREHYWTKIANMNRRRGCHSLAVLNG 587 (680)
Q Consensus 528 ----~~r--------------~~~s~~-~~~g~Lyv~GG~~~~~~~~~v~~-yD~~t~~W~~v~~~p~~r~~~s~v~~~~ 587 (680)
..+ ....+. .-++.++++|-.. .+++ .|.-...|+.+......+........++
T Consensus 219 ~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg 292 (398)
T PLN00033 219 VSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADG 292 (398)
T ss_pred ccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCccceeeeeEcCCC
Confidence 000 001111 1245565654321 2333 3333334998865443333333334578
Q ss_pred EEEEEeccCCCCCCCeEEEEeCCCCcE-----EEcCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC-CC
Q 005735 588 KLYALGGFDGSAMVPSIEVYDPRLGSW-----MSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QG 660 (680)
Q Consensus 588 ~IyviGG~~~~~~~~~v~~yD~~t~~W-----~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~-~~ 660 (680)
.++++|.. ..++.-+.....| ..+..-.......+++.. ++.+++.|.... +..-..+ .+
T Consensus 293 ~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~-------v~~s~D~G~t 359 (398)
T PLN00033 293 GLWLLTRG------GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGI-------LLRSTDGGKS 359 (398)
T ss_pred CEEEEeCC------ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCc-------EEEeCCCCcc
Confidence 88888753 2234434444445 333322122222333333 567888875421 2232333 78
Q ss_pred eEecc
Q 005735 661 WEEIN 665 (680)
Q Consensus 661 W~~v~ 665 (680)
|+...
T Consensus 360 W~~~~ 364 (398)
T PLN00033 360 WKRDK 364 (398)
T ss_pred eeEcc
Confidence 88864
No 156
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.15 E-value=1.8e+02 Score=32.28 Aligned_cols=213 Identities=9% Similarity=0.050 Sum_probs=99.9
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC-CCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS-SARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp-~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
++..+++|-.. .++.=.-.-.+|+.++..+ .+...+....+ ++.++++|... .+++-+-.-.+|+.
T Consensus 146 ~~~g~~vG~~G------~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G------~v~~S~D~G~tW~~ 213 (398)
T PLN00033 146 GKEGWIIGKPA------ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG------AIYVTSNAGRNWKA 213 (398)
T ss_pred CCEEEEEcCce------EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc------eEEEECCCCCCceE
Confidence 46677776431 2222233346899876422 12222333344 45677777432 35555555678987
Q ss_pred CCCCC----CCCc--------------ccEEEE-ECCEEEEEccCCCCcccceEEE-EeCCCccEEEcccccccccceEE
Q 005735 476 RPSLN----GTKG--------------SLAGAT-IDNKIFAIGGGNGLECFSDVEM-LDLDIGKWIRTRSMLQKRFALAA 535 (680)
Q Consensus 476 l~~lp----~~r~--------------~~a~~v-~~gkIyV~GG~~~~~~~~~ve~-yD~~t~~W~~i~~~p~~r~~~s~ 535 (680)
....+ ..+. ...... -++.++++|-.. .++. .|.-...|+.+......+.....
T Consensus 214 ~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l~~v~ 287 (398)
T PLN00033 214 AVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRIQNMG 287 (398)
T ss_pred cccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCccceeeee
Confidence 62211 1110 011111 134455554211 1222 22223348877644433332222
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCc-----EEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeC
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHY-----WTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDP 609 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~-----W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~ 609 (680)
...++.++++|... .++.-+..... |..++..........+... ++.++++|.. ..++.-..
T Consensus 288 ~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------G~v~~s~D 355 (398)
T PLN00033 288 WRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------GILLRSTD 355 (398)
T ss_pred EcCCCCEEEEeCCc------eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC------CcEEEeCC
Confidence 34578888887532 23333333333 4444322122222333333 5678888763 23445555
Q ss_pred CCCcEEEcCC-CCCCccceEEEEE-CCEEEEEe
Q 005735 610 RLGSWMSGEP-MKLSRGYLGAAVV-KEAIYVIG 640 (680)
Q Consensus 610 ~t~~W~~v~~-lp~~R~~~s~v~~-~~~lyV~G 640 (680)
.-++|+.+.. -..+-..+.+... +++.|+.|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 6679999753 2122122244333 47888887
No 157
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=70.15 E-value=6 Score=37.09 Aligned_cols=97 Identities=12% Similarity=0.234 Sum_probs=52.8
Q ss_pred chhccCCCCcEEEEecC--CCeEeeEEEeccCCCccccCC----CCCCCCC-CCCCCceEEEEEeeeecCCCCCcchhH-
Q 005735 48 YVRKVDPGLPLFLFNYT--DRKLHGIFEAASPGMMNINPY----GWTDGSE-RTSYPAQVQIRVRMQCQPLNEEKFKPI- 119 (680)
Q Consensus 48 ~v~~i~~g~~lfl~~~~--~~~l~g~~~a~s~g~~~~~~~----a~~~~~~-~~~~paqv~~~~~~~~~pl~e~~~~~~- 119 (680)
++++||||..+|+|--. .+.+.|+.|.+++.-.+-.+. .+.+... ..+|-.+|++...+.+ |++-.++|..
T Consensus 36 ~l~~mk~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-pi~l~~Lk~~~ 114 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSGCKERGIVAIGEVVSEPYPDPTAFDPDSPYYDPKSNPKPYRVDVEYVKIFEK-PIPLKELKAEP 114 (143)
T ss_dssp HHHC--TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GGGTSTTSTTBTTTSCSSSEEEEEEEEEEEEE-EEEHHHHHC-G
T ss_pred hhhcCCCCCEEEEEEcCCCCCEEEEEEEEeccccCCCccccccccCcCCccCCCeeEEEEEEEEecCC-CcCHHHHhcCC
Confidence 67899999999999988 799999999998765444331 1112221 1234445555444443 5543333221
Q ss_pred -Hhhc--ccCCCCCCCCCCHHHHHHHHHh
Q 005735 120 -IAAN--YYTPHHFWFELDHSQASKLIAL 145 (680)
Q Consensus 120 -i~~n--~~~~~~f~~~l~~~q~~~l~~l 145 (680)
+.+- .-.++--.+++|.+|...|++|
T Consensus 115 ~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 115 ELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred ccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 2210 0123456678899999888876
No 158
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=69.45 E-value=1.4e+02 Score=30.76 Aligned_cols=199 Identities=13% Similarity=0.143 Sum_probs=104.5
Q ss_pred EEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeC----CCCcEEECCCCCCCCcccEEEEE
Q 005735 416 LELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSP----ANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 416 v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~----~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
+.......+.|.+-|... ++++|++.+..+ ..+.-|.. ....|...-.+|.+-.+.+.+++
T Consensus 12 ~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVy 76 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVY 76 (249)
T ss_pred EEeeccccceeecCCCcc-----------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEEE
Confidence 344455557777654322 678888844432 22333433 23455555567888888888999
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCcc---EEEcccccc---------cccceEEEEECCEEEEEcCCCCCCcCceeEE
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGK---WIRTRSMLQ---------KRFALAAAELNGVLYATGGYDGNEYMNSAER 559 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~---W~~i~~~p~---------~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~ 559 (680)
+|.+|.-.+ ....+..||+.+.. |..++.+.- +....-.++-...||++=-..+..-.-.+-.
T Consensus 77 nGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 77 NGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred cceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 999988653 34568899998843 555543221 0111123333444565533222221222356
Q ss_pred EeCCC----CcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeE-EEEeCCCCcEEEcCCCCCCccceEEEEE--
Q 005735 560 FDPRE----HYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSI-EVYDPRLGSWMSGEPMKLSRGYLGAAVV-- 632 (680)
Q Consensus 560 yD~~t----~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v-~~yD~~t~~W~~v~~lp~~R~~~s~v~~-- 632 (680)
+|+.+ .+|..-- + ++....+.++-|.||++-...... ..| +.||..+++-..+ .+|.+..+..+..+
T Consensus 152 Ldp~tl~~e~tW~T~~--~-k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~~-~ipf~N~y~~~~~idY 225 (249)
T KOG3545|consen 152 LDPETLEVERTWNTTL--P-KRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQERI-DLPFPNPYSYATMIDY 225 (249)
T ss_pred cCHHHhheeeeecccc--C-CCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceecc-cccccchhhhhhccCC
Confidence 66643 4563221 1 122223334446678876554321 123 7899988877544 33444333333322
Q ss_pred ---CCEEEEEe
Q 005735 633 ---KEAIYVIG 640 (680)
Q Consensus 633 ---~~~lyV~G 640 (680)
+.+||++-
T Consensus 226 NP~D~~LY~wd 236 (249)
T KOG3545|consen 226 NPRDRRLYAWD 236 (249)
T ss_pred CcccceeeEec
Confidence 45677763
No 159
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=68.17 E-value=1.8e+02 Score=31.35 Aligned_cols=244 Identities=17% Similarity=0.140 Sum_probs=118.6
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC-CccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC-cE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS-ARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND-EW 473 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~-~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~-~W 473 (680)
++.||+..........-..+.++..++++..+...+. ....+.++.. +..||+..-.. ..+.+|+...+ +-
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~-----g~v~v~~l~~~g~l 122 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG-----GSVSVFPLDDDGSL 122 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSEE
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC-----CeEEEEEccCCccc
Confidence 6777777654211112234555666678888876653 3333333332 56677753221 35677776653 21
Q ss_pred EEC----------CCCCCCCcc--cEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCcc--EEEccc--ccccccceEE
Q 005735 474 TSR----------PSLNGTKGS--LAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRS--MLQKRFALAA 535 (680)
Q Consensus 474 ~~l----------~~lp~~r~~--~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~--~p~~r~~~s~ 535 (680)
... +........ |.+..- ++ .+||..= -.+.+..|+..... ...... ++..-.-..+
T Consensus 123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 111 111111222 333333 44 4777631 23568888887665 544332 2222111223
Q ss_pred EEE--CCEEEEEcCCCCCCcCceeEEEeCC--CCcEEEec---cCCCC---C-ceeEEEEE--CCEEEEEeccCCCCCCC
Q 005735 536 AEL--NGVLYATGGYDGNEYMNSAERFDPR--EHYWTKIA---NMNRR---R-GCHSLAVL--NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 536 ~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~--t~~W~~v~---~~p~~---r-~~~s~v~~--~~~IyviGG~~~~~~~~ 602 (680)
+.. +..+|++.-.+ +.+.+|+.. ++.++.+. .+|.. . ..+.++.. +..||+.... .+
T Consensus 198 ~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~ 267 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SN 267 (345)
T ss_dssp EE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TT
T ss_pred EEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CC
Confidence 333 35799986543 455555554 66666653 33321 1 23344444 4467776432 46
Q ss_pred eEEEEeC--CCCcEEEcCCCCCC-ccceEEEEE-CCEEEEEecccCCCcccceEEEEc--CC-CCeEeccc
Q 005735 603 SIEVYDP--RLGSWMSGEPMKLS-RGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFK--EG-QGWEEINS 666 (680)
Q Consensus 603 ~v~~yD~--~t~~W~~v~~lp~~-R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~--~~-~~W~~v~~ 666 (680)
.|.+|++ .++..+.+...+.. .....++.- +++.+++++... +.|.+|+ +. +.++.+..
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEecc
Confidence 6788876 45567666555442 222233332 444444444433 3467775 44 67777653
No 160
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=67.90 E-value=1e+02 Score=33.89 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=55.1
Q ss_pred CccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc-----CCCC--CceeEEEEECCEE
Q 005735 517 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN-----MNRR--RGCHSLAVLNGKL 589 (680)
Q Consensus 517 t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~-----~p~~--r~~~s~v~~~~~I 589 (680)
.+.|+.+..+. ...--++.++|++|++.- ...++.++.+- .-.++.. +... ......+...|.|
T Consensus 189 ~~~Wt~l~~~~--~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQMG--YHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccCCC--ceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 48999987422 224457889999999832 12466666321 1122221 1111 1224466678889
Q ss_pred EEEeccCCCC------------CCC--eEEEEeCCCCcEEEcCCCC
Q 005735 590 YALGGFDGSA------------MVP--SIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 590 yviGG~~~~~------------~~~--~v~~yD~~t~~W~~v~~lp 621 (680)
+++..+.... ... .|+..|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 9988742110 112 3555688889999988764
No 161
>PTZ00420 coronin; Provisional
Probab=66.73 E-value=2.6e+02 Score=32.70 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEE-EECCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-ec
Q 005735 494 KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAA-ELNGVLYATGGYDGNEYMNSAERFDPREHYWTK-IA 571 (680)
Q Consensus 494 kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~-~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-v~ 571 (680)
.+++.||.+ ..+.+||+.+++=...-..+. ...++. ..+|.+++.++.++ .+.+||+.++.-.. +.
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~~~~--~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQINMPK--KLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQEIASSFH 206 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEecCC--cEEEEEECCCCCEEEEEecCC-----EEEEEECCCCcEEEEEe
Confidence 355566654 346788888765111001111 111222 22677777776553 68899998764221 11
Q ss_pred cCCCCCceeEE--EE--ECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 572 NMNRRRGCHSL--AV--LNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 572 ~~p~~r~~~s~--v~--~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
.-...+....+ .. -++..++.+|.++. ....+.+||+++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence 11111111111 11 23455566665542 223588999874
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=66.61 E-value=1.6e+02 Score=30.36 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=74.1
Q ss_pred cccccceEEEc-CCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccce
Q 005735 386 LLESSDELHLD-PSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 386 p~~~~~~~~v~-~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~ 462 (680)
+.+-..++.+. ..+.|+..||- ..++..|.++++.+..-.-. .-+-|+++.- ++.| +-|+.++ +
T Consensus 113 evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~rGH-tDYvH~vv~R~~~~qi-lsG~EDG-----t 179 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYRGH-TDYVHSVVGRNANGQI-LSGAEDG-----T 179 (325)
T ss_pred cCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEcCC-cceeeeeeecccCcce-eecCCCc-----c
Confidence 34444555555 58889999983 35788899999876542211 2345555553 2333 3565553 4
Q ss_pred EEEEeCCCCcEEE-CC-----CCCCCCccc--EEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceE
Q 005735 463 VESYSPANDEWTS-RP-----SLNGTKGSL--AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALA 534 (680)
Q Consensus 463 v~vyD~~t~~W~~-l~-----~lp~~r~~~--a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s 534 (680)
+.++|..|.+=.+ +. ++..|..+- .+...+..-.|+||.. .+-.+++...+=..+-|.|.+ .+-
T Consensus 180 vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLrsse~t~vfpipa~--v~~ 251 (325)
T KOG0649|consen 180 VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLRSSESTCVFPIPAR--VHL 251 (325)
T ss_pred EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEeccCCCceEEEecccc--eeE
Confidence 6778888765432 22 222322222 4444566667777643 223455554443333333322 333
Q ss_pred EEEECCEEEEEc
Q 005735 535 AAELNGVLYATG 546 (680)
Q Consensus 535 ~~~~~g~Lyv~G 546 (680)
+...++.+++.|
T Consensus 252 v~F~~d~vl~~G 263 (325)
T KOG0649|consen 252 VDFVDDCVLIGG 263 (325)
T ss_pred eeeecceEEEec
Confidence 444555555554
No 163
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=65.69 E-value=2.1e+02 Score=31.20 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=76.5
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEE--ECCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAM--LNGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~--~~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+.++.|+..+.+.||.+. ..+.++..++.|.- .++.....-..+. .++.+++.|+..+ .+.++...
T Consensus 69 avsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~s 136 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDD-----LAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVS 136 (399)
T ss_pred EEEeCCCCceEEecCCCc-----eEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcc
Confidence 455666888999999753 46778888877432 2333333333333 3677777777654 35555555
Q ss_pred C--CcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEc
Q 005735 470 N--DEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATG 546 (680)
Q Consensus 470 t--~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~G 546 (680)
+ ..|.....+..--. +... -+.|+++|-.++ .+|+|.+..+.-.++-+=+..+..+.-..-+|+..+.|
T Consensus 137 tg~~~~~~~~e~~dieW---l~WHp~a~illAG~~DG-----svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEW---LKWHPRAHILLAGSTDG-----SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred cCceEEEeecccCceEE---EEecccccEEEeecCCC-----cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE
Confidence 4 35655422110000 0000 234566654443 47888887764322211112222222222246655555
Q ss_pred CCCCCCcCceeEEEeCCCCc
Q 005735 547 GYDGNEYMNSAERFDPREHY 566 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~ 566 (680)
-.++ .+.+||+.+++
T Consensus 209 y~dg-----ti~~Wn~ktg~ 223 (399)
T KOG0296|consen 209 YDDG-----TIIVWNPKTGQ 223 (399)
T ss_pred ecCc-----eEEEEecCCCc
Confidence 4332 57778887764
No 164
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.46 E-value=1.9e+02 Score=30.59 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=100.8
Q ss_pred eEEEEeCCCCeEEEcCC-CCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE
Q 005735 415 TLELYLPSCDVIKTLKP-MSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~-mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
-+-++|+++...++.+- ...+-.+--.+++ .+.|+..|-.... =++||.++.-+..+.....--+-.++.-
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~y------GrLdPa~~~i~vfpaPqG~gpyGi~atp 198 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAY------GRLDPARNVISVFPAPQGGGPYGICATP 198 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccc------eecCcccCceeeeccCCCCCCcceEECC
Confidence 57788888877665542 1112222223344 3566665542211 1556666654444332222233345556
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEccccccc-ccce--EEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEE
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK-RFAL--AAAELNGVLYATGGYDGNEYMNSAERFDPREHYWT 568 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~-r~~~--s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 568 (680)
+|.+|+.-- .-+-+-..|+.+..=+.++. |.. .... ..+--.+++++.- .-...+.+||+.+.+|.
T Consensus 199 dGsvwyasl-----agnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 199 DGSVWYASL-----AGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWI 267 (353)
T ss_pred CCcEEEEec-----cccceEEcccccCCcceecC-CCcccccccccccCccCcEEEec-----cCCceeeEeCcccccce
Confidence 888888621 12445667777775444432 222 1111 1122256777751 11247899999999999
Q ss_pred EeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEEC
Q 005735 569 KIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVK 633 (680)
Q Consensus 569 ~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~ 633 (680)
+.+-....-..+++-+- .+++++-.- -.+.+..||+++.+.+.+ |.+|.......++
T Consensus 268 eypLPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~---p~pr~n~gn~ql~ 325 (353)
T COG4257 268 EYPLPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVL---PIPRPNSGNIQLD 325 (353)
T ss_pred eeeCCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEe---cCCCCCCCceecc
Confidence 88632222222333332 455665321 234578999999887765 4444444444443
No 165
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=65.35 E-value=2.4e+02 Score=31.84 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=69.4
Q ss_pred eEEEEeCCCCeEEEcC-CCCCCcc------------ceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCC
Q 005735 415 TLELYLPSCDVIKTLK-PMSSARS------------YASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNG 481 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~-~mp~~R~------------~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~ 481 (680)
++|.|||.+...+.+. .+|..|. .--.++++|..+++=.+. ..+++++-.+---+++.-..
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG------kaFi~~~~~~~~iqv~~~~~ 361 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG------KAFIMRPWDGYSIQVGKKGG 361 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC------cEEEECCCCCeeEEcCCCCc
Confidence 6999999999988774 2333321 001223344444332221 24455444332223322222
Q ss_pred CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcc-cccccccceEEEEECCEEEEEcCCCCCCcCceeEEE
Q 005735 482 TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR-SMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERF 560 (680)
Q Consensus 482 ~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~-~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~y 560 (680)
-|+ .-...+++-.|+|-.++ ..+.+||..++.-..+. ++.. .....+.-+|+..+++... -.+|++
T Consensus 362 VrY--~r~~~~~e~~vigt~dg----D~l~iyd~~~~e~kr~e~~lg~--I~av~vs~dGK~~vvaNdr-----~el~vi 428 (668)
T COG4946 362 VRY--RRIQVDPEGDVIGTNDG----DKLGIYDKDGGEVKRIEKDLGN--IEAVKVSPDGKKVVVANDR-----FELWVI 428 (668)
T ss_pred eEE--EEEccCCcceEEeccCC----ceEEEEecCCceEEEeeCCccc--eEEEEEcCCCcEEEEEcCc-----eEEEEE
Confidence 222 22223444566665443 35778999988765543 2221 1111222355655554322 268888
Q ss_pred eCCCCcEEEec
Q 005735 561 DPREHYWTKIA 571 (680)
Q Consensus 561 D~~t~~W~~v~ 571 (680)
|.+++.-+.+.
T Consensus 429 didngnv~~id 439 (668)
T COG4946 429 DIDNGNVRLID 439 (668)
T ss_pred EecCCCeeEec
Confidence 88888776664
No 166
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=64.73 E-value=2.2e+02 Score=31.14 Aligned_cols=77 Identities=10% Similarity=0.010 Sum_probs=45.9
Q ss_pred EcC-CCEEEEEecC----CCCcccCeEEEEeCCCCeEE-EcCCCCCCcc-------ceEEEEECCEEEEEecCCCCCccc
Q 005735 395 LDP-SESIYLVGGC----DGDSWLSTLELYLPSCDVIK-TLKPMSSARS-------YASAAMLNGELYIFGGGDGNSWHN 461 (680)
Q Consensus 395 v~~-~~~Iyv~GG~----~~~~~~~~v~~yd~~t~~W~-~l~~mp~~R~-------~~s~v~~~~~IyV~GG~~~~~~~~ 461 (680)
+.+ +..||+.-.+ ........+.+||+.+.+-. +++..+.||. .+++..-|..+||..= ...+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----~p~~ 128 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF----SPSP 128 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC----CCCC
Confidence 444 5678887774 12344577999999988754 3443334342 2222222456887632 2246
Q ss_pred eEEEEeCCCCcEEE
Q 005735 462 TVESYSPANDEWTS 475 (680)
Q Consensus 462 ~v~vyD~~t~~W~~ 475 (680)
.+-+.|..+++-..
T Consensus 129 ~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 129 AVGVVDLEGKAFVR 142 (352)
T ss_pred EEEEEECCCCcEEE
Confidence 78899999887644
No 167
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=64.67 E-value=2.7e+02 Score=32.25 Aligned_cols=147 Identities=19% Similarity=0.254 Sum_probs=76.0
Q ss_pred EEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCccc-EEEEECC-EEEEEccCCCCcccceEEEEeCCCcc
Q 005735 442 AMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSL-AGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 442 v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~-a~~v~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
+.+++.++|.|..++ .|-+||+.+.+- +..+.. .... -+..+++ ..++-|+.+ ..+.++|+.+..
T Consensus 337 v~~~~~~lvsgs~d~-----~v~VW~~~~~~c--l~sl~g-H~~~V~sl~~~~~~~~~Sgs~D-----~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 337 VQLDEPLLVSGSYDG-----TVKVWDPRTGKC--LKSLSG-HTGRVYSLIVDSENRLLSGSLD-----TTIKVWDLRTKR 403 (537)
T ss_pred EEecCCEEEEEecCc-----eEEEEEhhhcee--eeeecC-CcceEEEEEecCcceEEeeeec-----cceEeecCCchh
Confidence 444667777776653 577788775432 222221 1111 1123455 444444433 457788888774
Q ss_pred EEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCC
Q 005735 520 WIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSA 599 (680)
Q Consensus 520 W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~ 599 (680)
..+..+......-....+.+.+++-+..++ .|.+||..++.-...-.-+ ....-++..++...++..+.+
T Consensus 404 -~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~-----~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~--- 473 (537)
T KOG0274|consen 404 -KCIHTLQGHTSLVSSLLLRDNFLVSSSADG-----TIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDD--- 473 (537)
T ss_pred -hhhhhhcCCcccccccccccceeEeccccc-----cEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecC---
Confidence 222222222111123344667777766654 6788898888776664433 222233333333555655544
Q ss_pred CCCeEEEEeCCCCc
Q 005735 600 MVPSIEVYDPRLGS 613 (680)
Q Consensus 600 ~~~~v~~yD~~t~~ 613 (680)
..+.+||+.+.+
T Consensus 474 --~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 474 --GSVKLWDLRSGT 485 (537)
T ss_pred --CeeEEEecccCc
Confidence 346677776543
No 168
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=64.66 E-value=2.1e+02 Score=32.10 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=17.6
Q ss_pred EECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 584 VLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 584 ~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
..++.+++.|+.++. |.++|+..++
T Consensus 286 s~DgtlLlSGd~dg~-----VcvWdi~S~Q 310 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGK-----VCVWDIYSKQ 310 (476)
T ss_pred ecCccEEEeeCCCCC-----EEEEecchHH
Confidence 348999999987753 5677765544
No 169
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=64.46 E-value=2.6e+02 Score=31.92 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
++...++||.++ .+.+|.+..+.-.+...+-..|..-+.+.+ ++..++.|-. ...+..||..++.= .
T Consensus 454 ~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~~-~ 522 (603)
T KOG0318|consen 454 DGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASREV-K 522 (603)
T ss_pred CCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCce-e
Confidence 778899999886 478888877654444433334444444444 5555555432 35678888766433 1
Q ss_pred cCCCCCCccceE----EEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 617 GEPMKLSRGYLG----AAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 617 v~~lp~~R~~~s----~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
...+ .+|. ++.+ +++++..|+.+.+ |.+|+..
T Consensus 523 ~~~w----~FHtakI~~~aWsP~n~~vATGSlDt~------Viiysv~ 560 (603)
T KOG0318|consen 523 TNRW----AFHTAKINCVAWSPNNKLVATGSLDTN------VIIYSVK 560 (603)
T ss_pred ccee----eeeeeeEEEEEeCCCceEEEeccccce------EEEEEcc
Confidence 1111 1222 2222 6777777777653 6677643
No 170
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=64.42 E-value=2.5e+02 Score=31.67 Aligned_cols=183 Identities=17% Similarity=0.276 Sum_probs=88.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
+++ |++.|..+ .++.++|...+ .-+.+....... ++++. -.+.+++.|+.++ .+-++|..+++=.
T Consensus 214 d~~-~l~s~s~D----~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~-----tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 214 DGS-YLLSGSDD----KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG-----TVRIWDVRTGECV 281 (456)
T ss_pred CCc-EEEEecCC----ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC-----cEEEEeccCCeEE
Confidence 555 55555443 35788888433 223333322222 22222 2557888888664 4668888885422
Q ss_pred EcccccccccceEEE--EECCEEEEEcCCCCCCcCceeEEEeCCCCcEE---EeccCCCCCceeEEEEE--CCEEEEEec
Q 005735 522 RTRSMLQKRFALAAA--ELNGVLYATGGYDGNEYMNSAERFDPREHYWT---KIANMNRRRGCHSLAVL--NGKLYALGG 594 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~--~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~---~v~~~p~~r~~~s~v~~--~~~IyviGG 594 (680)
. .+........++ .-++.+++.+.+++ .+.+||..++.-. .+.....+. ....+.. +++ |++-+
T Consensus 282 ~--~l~~hs~~is~~~f~~d~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~-~ll~~ 352 (456)
T KOG0266|consen 282 R--KLKGHSDGISGLAFSPDGNLLVSASYDG-----TIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGK-YLLSA 352 (456)
T ss_pred E--eeeccCCceEEEEECCCCCEEEEcCCCc-----cEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCc-EEEEe
Confidence 2 222111122222 23677777776543 6889999887733 333332332 2233333 444 44434
Q ss_pred cCCCCCCCeEEEEeCCCCcEEE-cCCCCC-CccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC
Q 005735 595 FDGSAMVPSIEVYDPRLGSWMS-GEPMKL-SRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~~W~~-v~~lp~-~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
..+ ..+-.||+....-.. ...... .+..+..+.. +++.++.|+.+. .+++|++.
T Consensus 353 ~~d----~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~------~v~~~~~~ 409 (456)
T KOG0266|consen 353 SLD----RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG------SVYVWDSS 409 (456)
T ss_pred cCC----CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc------eEEEEeCC
Confidence 322 245666666432221 111111 1344344433 566666665544 36666654
No 171
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=63.83 E-value=1.3e+02 Score=33.48 Aligned_cols=203 Identities=15% Similarity=0.151 Sum_probs=101.6
Q ss_pred ceEEEEECCEEEEEe---cCC-CCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEE
Q 005735 438 YASAAMLNGELYIFG---GGD-GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEML 513 (680)
Q Consensus 438 ~~s~v~~~~~IyV~G---G~~-~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~y 513 (680)
.+++.-+++.+=|+- -+. .+...+.++++|..-+---++..+-..-.-.++-..++..|+.-- .....+.+.
T Consensus 379 ~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTf----rqtDPlfvi 454 (603)
T COG4880 379 SFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTF----RQTDPLFVI 454 (603)
T ss_pred cccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEE----eccCceEEE
Confidence 344444455554443 332 355678899999888776666666554455566667888887732 223445666
Q ss_pred eCCCccEE-EcccccccccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCc-EEEe------ccCCCCCceeEEEE
Q 005735 514 DLDIGKWI-RTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHY-WTKI------ANMNRRRGCHSLAV 584 (680)
Q Consensus 514 D~~t~~W~-~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v------~~~p~~r~~~s~v~ 584 (680)
|+..-+=- .++.+..|-+..-..-+ ++++.=+|-.++.- .+-.||.+.-. =+++ .......+.|.+..
T Consensus 455 DlsNPenPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~v---KiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl 531 (603)
T COG4880 455 DLSNPENPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGGV---KISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFL 531 (603)
T ss_pred EcCCCCCCceeEEEecCCchhhccccCCCcEEEeecccCCc---eEEEEeccCCCCchhhhheehhhhcchhhhccceee
Confidence 66554321 12222222222222222 45566666555431 34455554311 0000 01112233455566
Q ss_pred ECC--EEEEEeccCCCCCCCeEEEEeCCCCcEEEc---CCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCCC
Q 005735 585 LNG--KLYALGGFDGSAMVPSIEVYDPRLGSWMSG---EPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQ 659 (680)
Q Consensus 585 ~~~--~IyviGG~~~~~~~~~v~~yD~~t~~W~~v---~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~~ 659 (680)
++. +|+.+--+.+ .++|-.+.+.=... -..+.-| +..+++-+|++||. .+|+++. +
T Consensus 532 ~d~~~~ifFlPay~~------gyif~iedg~kl~k~~e~k~na~R----A~fi~dylY~vg~~--------ev~~lde-n 592 (603)
T COG4880 532 YDPEAEIFFLPAYLG------GYIFFIEDGSKLRKRAERKLNADR----AFFIKDYLYLVGGN--------EVWKLDE-N 592 (603)
T ss_pred cCCcccEEEecccCc------cEEEEEecCceeeehhhhccccee----eEEecceEEEeccc--------eeEEecc-c
Confidence 643 4555543222 12343333311111 1223333 34579999999983 5788877 7
Q ss_pred CeEeccc
Q 005735 660 GWEEINS 666 (680)
Q Consensus 660 ~W~~v~~ 666 (680)
.|..++.
T Consensus 593 swe~Vge 599 (603)
T COG4880 593 SWEVVGE 599 (603)
T ss_pred hHhhhhh
Confidence 8988764
No 172
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=63.07 E-value=2.3e+02 Score=30.85 Aligned_cols=108 Identities=16% Similarity=0.372 Sum_probs=62.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC-ccceEEEEECCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA-RSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~-R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.+..+.+++..|+.|+.+ ..+-++|..++..+.- ++.. -..-.+++...+-|+|....+ ..|-+||.+
T Consensus 155 r~vavdP~n~wf~tgs~D-----rtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHpYlFs~ged----k~VKCwDLe 223 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHPYLFSAGED----KQVKCWDLE 223 (460)
T ss_pred EEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEe--ecchhheeeeeeecccCceEEEecCC----CeeEEEech
Confidence 467788899999888765 3577889998876543 1111 112234455666777765443 357889998
Q ss_pred CCcEEECCCCCCCCcccEEEEE-----CCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI-----DNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~-----~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
.|+..+. -.+..+++.+ --.+++-||++. .+-++|..+..
T Consensus 224 ~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDs-----t~RvWDiRtr~ 268 (460)
T KOG0285|consen 224 YNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDS-----TIRVWDIRTRA 268 (460)
T ss_pred hhhhHHH-----hccccceeEEEeccccceeEEecCCcc-----eEEEeeecccc
Confidence 8864221 1111222222 134667777653 34467766654
No 173
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=60.71 E-value=9.6 Score=26.76 Aligned_cols=29 Identities=3% Similarity=-0.080 Sum_probs=22.0
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHhHhhhHHH
Q 005735 315 ETCSSSRCQSIINELIKEVAELKAFKTEQTLKMK 348 (680)
Q Consensus 315 ~~~~~r~~~~~l~~V~K~wrsl~~~~~i~s~el~ 348 (680)
+...+......++.|||+|+.+ +.+++++
T Consensus 10 ~~~l~~~d~~~~~~vc~~~~~~-----~~~~~~~ 38 (41)
T smart00256 10 LSKLPPKDLLRLRKVSRRWRSL-----IDSHDFW 38 (41)
T ss_pred HHcCCHHHHHHHHHHHHHHHHH-----hcChhhh
Confidence 4455667788999999999999 6665544
No 174
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=59.37 E-value=2.4e+02 Score=29.82 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=116.5
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCC--cccEEEE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK--GSLAGAT 490 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r--~~~a~~v 490 (680)
..+=.+||.+++-+..+ +...-+-|.+++- ++..++.-+. ..+-++|+++..-++.+ +|..+ .+.-.++
T Consensus 83 gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~------~aI~R~dpkt~evt~f~-lp~~~a~~nlet~v 154 (353)
T COG4257 83 GAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTG------LAIGRLDPKTLEVTRFP-LPLEHADANLETAV 154 (353)
T ss_pred ccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCc------ceeEEecCcccceEEee-cccccCCCccccee
Confidence 34667899999866653 4455555555543 5566665432 25778999888766653 33332 3334455
Q ss_pred EC--CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEE-EEECCEEEEEcCCCCCCcCceeEEEeCCCCcE
Q 005735 491 ID--NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAA-AELNGVLYATGGYDGNEYMNSAERFDPREHYW 567 (680)
Q Consensus 491 ~~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~-~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W 567 (680)
++ |.++..|-..... .+||.++.-+..+. |.......+ +.-+|.+|...- +-+.+-..|+.+..=
T Consensus 155 fD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~a 222 (353)
T COG4257 155 FDPWGNLWFTGQIGAYG------RLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHA 222 (353)
T ss_pred eCCCccEEEeeccccce------ecCcccCceeeecc-CCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCc
Confidence 54 4566655322111 56777666444332 222222223 334888888632 224677888888766
Q ss_pred EEeccCCCCCceeEE--EEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC-CCCCccceEEEEECCEEEEEecccC
Q 005735 568 TKIANMNRRRGCHSL--AVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP-MKLSRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 568 ~~v~~~p~~r~~~s~--v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~-lp~~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
+.++..........- +---+++.+-- .....+..||+...+|.+-+- -..+|.+..-|--.+++++---.
T Consensus 223 ev~p~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~-- 295 (353)
T COG4257 223 EVVPQPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD-- 295 (353)
T ss_pred ceecCCCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccc--
Confidence 655432211111111 11135566651 224568999999999998642 22345444333335666663211
Q ss_pred CCcccceEEEEcCC-CCeEec
Q 005735 645 GSEIVDTVERFKEG-QGWEEI 664 (680)
Q Consensus 645 ~~~~~~~ve~y~~~-~~W~~v 664 (680)
...+..|||. .+.+++
T Consensus 296 ----agai~rfdpeta~ftv~ 312 (353)
T COG4257 296 ----AGAIGRFDPETARFTVL 312 (353)
T ss_pred ----cCceeecCcccceEEEe
Confidence 1235566665 555554
No 175
>PRK10115 protease 2; Provisional
Probab=58.88 E-value=3.8e+02 Score=32.05 Aligned_cols=214 Identities=7% Similarity=-0.085 Sum_probs=103.6
Q ss_pred EEEcCCCEEEEEecCCCC-cccCeEEEEeCCCCe--EEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 393 LHLDPSESIYLVGGCDGD-SWLSTLELYLPSCDV--IKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~-~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.....++.-+++...... ....++++++..++. =..+-.-............ +++-.++..... ..+.++.|+.
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~ 254 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDA 254 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEEC
Confidence 334434444444443322 234678888888772 1222111111222222223 333333443332 2356778773
Q ss_pred --CCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCC-CccEEEcccccccccceEEEEECCEEEEE
Q 005735 469 --ANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD-IGKWIRTRSMLQKRFALAAAELNGVLYAT 545 (680)
Q Consensus 469 --~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~-t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~ 545 (680)
.+..|..+-+.+.. ........++.+|+.--.+ .....+...++. ...|+.+-+......--.+...++.|++.
T Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~ 331 (686)
T PRK10115 255 ELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVE 331 (686)
T ss_pred cCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEE
Confidence 23444322222211 1122334467788875332 223346667776 57898775543332333444557888777
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE----C-CEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL----N-GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~----~-~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
.-.++ ...++++|..+.....+. ++.+... +.... + +.+++.- .+-..-.+++.||+.+++|+.+.
T Consensus 332 ~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~--ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 332 ERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TWIAYNPEPETSRLRYGY--SSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred EEeCC---EEEEEEEcCCCCceEEec-CCCCceE-eeecccCCCCCceEEEEE--ecCCCCCEEEEEECCCCcEEEEE
Confidence 54333 345788887666665554 1222222 11111 1 3333321 12234567999999998888764
No 176
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=58.70 E-value=2.7e+02 Score=31.22 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=32.0
Q ss_pred ceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEE---ECCEEEEEccCCCC
Q 005735 438 YASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT---IDNKIFAIGGGNGL 504 (680)
Q Consensus 438 ~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v---~~gkIyV~GG~~~~ 504 (680)
.++++..+.-.|++||... ..+|++...++.- +.- -.+++....+. -||..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i~----g~lYlWelssG~L--L~v-~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS----GNLYLWELSSGIL--LNV-LSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeeccc----CcEEEEEeccccH--HHH-HHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4566666777777777432 2467766666531 100 12222222211 17788888887755
No 177
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=57.82 E-value=2.8e+02 Score=30.19 Aligned_cols=142 Identities=21% Similarity=0.332 Sum_probs=75.7
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCc--ccEEEEECCEEEEEccCCCCcccceEEEEeCCCc--cE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKG--SLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KW 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~--~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~--~W 520 (680)
++.+.+.||.+ +..++++..++.|--. ++.-.- ...+...++.+.+-|+-++. +.++...++ +|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCcc-----EEEEEcccCceEE
Confidence 67788888876 3467888888876321 221111 22334447888888875543 445554443 45
Q ss_pred EEccccccc---ccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCC
Q 005735 521 IRTRSMLQK---RFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDG 597 (680)
Q Consensus 521 ~~i~~~p~~---r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~ 597 (680)
....++..- +..+ .+.|+++|-.++ .+|+|...++.-.++-+-+..++..+-..-+|+..+.|-.+
T Consensus 143 ~~~~e~~dieWl~WHp-----~a~illAG~~DG-----svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d- 211 (399)
T KOG0296|consen 143 KLDQEVEDIEWLKWHP-----RAHILLAGSTDG-----SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD- 211 (399)
T ss_pred EeecccCceEEEEecc-----cccEEEeecCCC-----cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC-
Confidence 443222111 1111 246777776554 68888887753333322233333333333356655554332
Q ss_pred CCCCCeEEEEeCCCCc
Q 005735 598 SAMVPSIEVYDPRLGS 613 (680)
Q Consensus 598 ~~~~~~v~~yD~~t~~ 613 (680)
.++.++|+++.+
T Consensus 212 ----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 ----GTIIVWNPKTGQ 223 (399)
T ss_pred ----ceEEEEecCCCc
Confidence 357788887763
No 178
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=57.55 E-value=3.8e+02 Score=31.53 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=105.6
Q ss_pred cCeEEEEeCCCCeEEEcCC--CCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCC-CCCCCcccEE
Q 005735 413 LSTLELYLPSCDVIKTLKP--MSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS-LNGTKGSLAG 488 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l~~--mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~-lp~~r~~~a~ 488 (680)
...+.+||+.. .|...+. .+..|+--+.+-. +++||-.|+.+ .+--+|+.+.+-..--. .-.+-. ++
T Consensus 46 ~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg------~i~EwDl~~lk~~~~~d~~gg~IW--si 116 (691)
T KOG2048|consen 46 DGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG------SITEWDLHTLKQKYNIDSNGGAIW--SI 116 (691)
T ss_pred CCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCc------eEEEEecccCceeEEecCCCccee--EE
Confidence 35689999986 6765543 3566777677776 88999988754 24444444432211100 000001 11
Q ss_pred EEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEE-EEcCCCCCCcCceeEEEeCCCCc
Q 005735 489 ATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLY-ATGGYDGNEYMNSAERFDPREHY 566 (680)
Q Consensus 489 ~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Ly-v~GG~~~~~~~~~v~~yD~~t~~ 566 (680)
+.. .+.+..+|-.++ -+..++...++-+.-..++......-....+.... ++||..+. -|-++|...++
T Consensus 117 ai~p~~~~l~IgcddG-----vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg----~Iriwd~~~~~ 187 (691)
T KOG2048|consen 117 AINPENTILAIGCDDG-----VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG----VIRIWDVKSGQ 187 (691)
T ss_pred EeCCccceEEeecCCc-----eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc----eEEEEEcCCCc
Confidence 111 223444442222 12233333333333333333333333445555555 66765432 36677777655
Q ss_pred EEEeccCC---CCC----ceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CCEEEE
Q 005735 567 WTKIANMN---RRR----GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYV 638 (680)
Q Consensus 567 W~~v~~~p---~~r----~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~~lyV 638 (680)
=..+-.|. ..+ ...++..+.+..++.|-. .+.|-.+|....+-.+--.+-.+- ..++++- ++.-++
T Consensus 188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-----~G~V~FWd~~~gTLiqS~~~h~ad-Vl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 188 TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-----AGTVTFWDSIFGTLIQSHSCHDAD-VLALAVADNEDRVF 261 (691)
T ss_pred eEEEeeecccccccCCceEEEEEEEeecCcEEEecC-----CceEEEEcccCcchhhhhhhhhcc-eeEEEEcCCCCeEE
Confidence 33332221 111 223444454555555532 355777777664433211111111 1233333 435666
Q ss_pred EecccCCCcccceEEEEcCC---CCeEecccCC
Q 005735 639 IGGVKNGSEIVDTVERFKEG---QGWEEINSRA 668 (680)
Q Consensus 639 ~GG~~~~~~~~~~ve~y~~~---~~W~~v~~~p 668 (680)
.+|.+.. +..|... ..|....+.-
T Consensus 262 saGvd~~------ii~~~~~~~~~~wv~~~~r~ 288 (691)
T KOG2048|consen 262 SAGVDPK------IIQYSLTTNKSEWVINSRRD 288 (691)
T ss_pred EccCCCc------eEEEEecCCccceeeecccc
Confidence 6677653 3444322 4587765543
No 179
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=2e+02 Score=32.76 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=36.8
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccc-cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCC
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPRE 564 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~-~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t 564 (680)
+|..+++|-.+ ..+++||..+.+ .++.|.. .....++...++.++..|..++ .|..+|...
T Consensus 228 ~G~~LavG~~~-----g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~~-----~I~~~dvR~ 289 (484)
T KOG0305|consen 228 DGSHLAVGTSD-----GTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRDG-----KILNHDVRI 289 (484)
T ss_pred CCCEEEEeecC-----CeEEEEehhhcc--ccccccCCcCceeEEEeccCceEEEecCCC-----cEEEEEEec
Confidence 57777776433 357788887665 3333333 2233345566888888887765 456666543
No 180
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=56.47 E-value=3.2e+02 Score=30.36 Aligned_cols=112 Identities=24% Similarity=0.269 Sum_probs=58.9
Q ss_pred EECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 537 ELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
..+|.+...||.+.. .-+||++++.-..+-.- .-+..+++.. -+|..++-||.++ .+-++|++...=
T Consensus 312 ~~DGSL~~tGGlD~~-----~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn-----t~kVWDLR~r~~- 379 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSL-----GRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDN-----TCKVWDLRMRSE- 379 (459)
T ss_pred cCCCceeeccCccch-----hheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCC-----cEEEeeeccccc-
Confidence 348999999998742 34678777765444221 2222333332 2777777777653 345666544321
Q ss_pred EcCCCCCCccceEEEE---ECCEEEEEecccCCCcccceEEEEcCCCCeEecccCC
Q 005735 616 SGEPMKLSRGYLGAAV---VKEAIYVIGGVKNGSEIVDTVERFKEGQGWEEINSRA 668 (680)
Q Consensus 616 ~v~~lp~~R~~~s~v~---~~~~lyV~GG~~~~~~~~~~ve~y~~~~~W~~v~~~p 668 (680)
+-.+|.-+.-.+-|- -.|..++.+|+++ ++-+|.+ .+|..+..|.
T Consensus 380 -ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~------t~kiWs~-~~~~~~ksLa 427 (459)
T KOG0272|consen 380 -LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN------TVKIWST-RTWSPLKSLA 427 (459)
T ss_pred -ceecccccchhhheEecccCCeEEEEcccCc------ceeeecC-CCcccchhhc
Confidence 223333222111111 2467777777764 3445544 5565555443
No 181
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=56.07 E-value=2e+02 Score=31.09 Aligned_cols=88 Identities=20% Similarity=0.444 Sum_probs=54.1
Q ss_pred eEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc-cceEEEEECC
Q 005735 462 TVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR-FALAAAELNG 540 (680)
Q Consensus 462 ~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r-~~~s~~~~~g 540 (680)
++-+++..|...- ..+..-+.+.++.-+.|++.|-|..+ +.+-.+|.+.+.-- . +.... .--.++-+++
T Consensus 341 TikvW~~st~efv--Rtl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~cL--R-vLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 341 TIKVWSTSTCEFV--RTLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACL--R-VLEGHEELVRCIRFDN 410 (499)
T ss_pred eEEEEeccceeee--hhhhcccccceehhccCeEEEecCCC-----ceEEEEeccccHHH--H-HHhchHHhhhheeecC
Confidence 4555565555432 23455567778888999999988654 45667888776521 1 11111 1123456788
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPRE 564 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t 564 (680)
+-.|-||++| .+-++|+.+
T Consensus 411 krIVSGaYDG-----kikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDG-----KIKVWDLQA 429 (499)
T ss_pred ceeeeccccc-----eEEEEeccc
Confidence 8889999887 455666544
No 182
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.70 E-value=3.2e+02 Score=29.20 Aligned_cols=138 Identities=20% Similarity=0.148 Sum_probs=79.4
Q ss_pred cCeEEEEeCCCCeEEEc--CCCCCCccceEEEE---E---CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCc
Q 005735 413 LSTLELYLPSCDVIKTL--KPMSSARSYASAAM---L---NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKG 484 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l--~~mp~~R~~~s~v~---~---~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~ 484 (680)
.+.++.||...++-+.+ ..+..++..++=+. . ++.||+.-+-. ....-+|..|.+++.-+.+..-|..+.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG--h~nLGvy~ldr~~g~~~~L~~~ps~KG 154 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG--HANLGVYSLDRRTGKAEKLSSNPSLKG 154 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC--cceeeeEEEcccCCceeeccCCCCcCc
Confidence 46799999998874443 12222333322221 1 57788765422 223458889999998888866655533
Q ss_pred ccEEEEECCEEEEEccCCCCcccceEEEEeCCCccE--EEccccc-------ccccceEEEEECCEEEEEcCCCCCCcCc
Q 005735 485 SLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW--IRTRSML-------QKRFALAAAELNGVLYATGGYDGNEYMN 555 (680)
Q Consensus 485 ~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W--~~i~~~p-------~~r~~~s~~~~~g~Lyv~GG~~~~~~~~ 555 (680)
+...+..+|-+ .+...-.+.+++||+.+++| +..+.-. ..+..-.++...+++|.|-+ .
T Consensus 155 ---~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r-------G 222 (339)
T PF09910_consen 155 ---TLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR-------G 222 (339)
T ss_pred ---eEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe-------c
Confidence 33344444433 33333467899999999999 4432111 12334445666777776622 1
Q ss_pred eeEEEeCCC
Q 005735 556 SAERFDPRE 564 (680)
Q Consensus 556 ~v~~yD~~t 564 (680)
.+.+.||..
T Consensus 223 Gi~vgnP~~ 231 (339)
T PF09910_consen 223 GIFVGNPYN 231 (339)
T ss_pred cEEEeCCCC
Confidence 356666663
No 183
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=51.07 E-value=94 Score=35.70 Aligned_cols=104 Identities=22% Similarity=0.320 Sum_probs=55.8
Q ss_pred CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC--CEEEEEcCCCCCCcCceeEEEeCCCCcEEE-
Q 005735 493 NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN--GVLYATGGYDGNEYMNSAERFDPREHYWTK- 569 (680)
Q Consensus 493 gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~--g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~- 569 (680)
--||+.|- -++++.+|++.+.|-. |+...-...-++.++ ..|+.+||.++ .++.||+...+-..
T Consensus 146 cDly~~gs------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g-----~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 146 CDLYLVGS------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG-----VVEFWDPRDKSRVGT 212 (703)
T ss_pred ccEEEeec------CcceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc-----eEEEecchhhhhhee
Confidence 34777653 3578999999999832 222221222233333 35778888664 68889998764222
Q ss_pred e------ccCCCCCce--eEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 570 I------ANMNRRRGC--HSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 570 v------~~~p~~r~~--~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+ ...|..-.. .++..+ ++-|-+.-|.. ...+++||+++.+
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASK 261 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCC
Confidence 1 112211111 233333 43555544432 3457888887653
No 184
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=50.40 E-value=49 Score=35.80 Aligned_cols=118 Identities=14% Similarity=-0.019 Sum_probs=60.2
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECC-EEEEEccC----CCCcccceEEEEeCCCccE
Q 005735 446 GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGG----NGLECFSDVEMLDLDIGKW 520 (680)
Q Consensus 446 ~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g-kIyV~GG~----~~~~~~~~ve~yD~~t~~W 520 (680)
.+|||.-...... ...+++||..+++- ++-++..-..+.+..-++ .+|+..-+ ....+..-+++||..|-+-
T Consensus 3 ~rvyV~D~~~~~~-~~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 3 HRVYVQDPVFFHM-TSRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TEEEEEE-GGGGS-SEEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred cEEEEECCccccc-cceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 4677765432222 25788999888764 222222223332322344 47776442 1223566789999998753
Q ss_pred EEccccccc-cc------ceEEEEECCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 521 IRTRSMLQK-RF------ALAAAELNGV-LYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 521 ~~i~~~p~~-r~------~~s~~~~~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
..--.+|.. |. ......-+|+ +|+.- -....+|-+.|+..++....
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~e 133 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGE 133 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeee
Confidence 221122221 32 2222222444 55541 13456899999999876543
No 185
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=49.08 E-value=5.1e+02 Score=30.52 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=41.2
Q ss_pred eeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCC--CcEEEcCC-CCCCccceEEEE
Q 005735 556 SAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRL--GSWMSGEP-MKLSRGYLGAAV 631 (680)
Q Consensus 556 ~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t--~~W~~v~~-lp~~R~~~s~v~ 631 (680)
.|-.||....+-..--..-.. -..++++- ++.-++.+|.++ .+..|-..+ +.|..... .-.++..-++++
T Consensus 226 ~V~FWd~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~-----~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 226 TVTFWDSIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDP-----KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred eEEEEcccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCC-----ceEEEEecCCccceeeeccccCCcccceeeee
Confidence 677788766542211110011 11233333 323444556543 455665444 35887653 334455567777
Q ss_pred ECCEEEEEeccc
Q 005735 632 VKEAIYVIGGVK 643 (680)
Q Consensus 632 ~~~~lyV~GG~~ 643 (680)
++. +++-||.+
T Consensus 300 ~~~-~l~sgG~d 310 (691)
T KOG2048|consen 300 IEN-ALISGGRD 310 (691)
T ss_pred ecc-eEEeccee
Confidence 766 77777765
No 186
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=48.56 E-value=4.7e+02 Score=29.93 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=89.0
Q ss_pred eEEEEeCCCCeEEEcCCCCC-CccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCC-cccEEEEE-
Q 005735 415 TLELYLPSCDVIKTLKPMSS-ARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK-GSLAGATI- 491 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~mp~-~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r-~~~a~~v~- 491 (680)
.+.+||..+.. .+..|.. .....++...++.++..|+.++ .+..+|.....=.. ..+..-+ .-++....
T Consensus 240 ~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~~-----~I~~~dvR~~~~~~-~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 240 TVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRDG-----KILNHDVRISQHVV-STLQGHRQEVCGLKWSP 311 (484)
T ss_pred eEEEEehhhcc--ccccccCCcCceeEEEeccCceEEEecCCC-----cEEEEEEecchhhh-hhhhcccceeeeeEECC
Confidence 35555554332 2223333 2333444555777888877653 34455544321000 0011001 11122222
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEE-cccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR-TRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~-i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
+++.++-||.+ +.+.+||.....+.. +..........+-+-+...|+..||...+ ..+..||..++.-..
T Consensus 312 d~~~lASGgnD-----N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D---~~i~fwn~~~g~~i~- 382 (484)
T KOG0305|consen 312 DGNQLASGGND-----NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD---RCIKFWNTNTGARID- 382 (484)
T ss_pred CCCeeccCCCc-----cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc---cEEEEEEcCCCcEec-
Confidence 55566666654 346677773222111 00111111122222336778888886543 356777776554221
Q ss_pred ccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCC--CccceEEEEECCEEEEEecccC
Q 005735 571 ANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL--SRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 571 ~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~--~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
..-..-...+++-. .+.|+.--|+... .|.+|+..+ -..+..+.. .|-.+.+..-++.-++.|+.+.
T Consensus 383 -~vdtgsQVcsL~Wsk~~kEi~sthG~s~n----~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 383 -SVDTGSQVCSLIWSKKYKELLSTHGYSEN----QITLWKYPS--MKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred -ccccCCceeeEEEcCCCCEEEEecCCCCC----cEEEEeccc--cceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 11111111222222 4567777776533 455554433 122222221 2433333333666666666543
No 187
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.02 E-value=4.4e+02 Score=29.49 Aligned_cols=131 Identities=18% Similarity=0.320 Sum_probs=72.0
Q ss_pred ceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeC
Q 005735 438 YASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDL 515 (680)
Q Consensus 438 ~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~ 515 (680)
+++++.. +|-||..|-.+ ..+-+||..+.+ ..+.+|.--+--.+..+ +|-.|+.-+.+. ..+-.||+
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEe
Confidence 4444444 77777766544 357788888765 44555542222222333 333444433221 12678888
Q ss_pred CCccEEEccc--ccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECC
Q 005735 516 DIGKWIRTRS--MLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG 587 (680)
Q Consensus 516 ~t~~W~~i~~--~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~ 587 (680)
...+ ..+. ++... ......+ .|..++++|.+ -.|+.|+-.+.+|+++..++........+.++.
T Consensus 419 RKl~--n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 419 RKLK--NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred hhhc--ccceeeccccc-cceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhhhcccccceeeecc
Confidence 7655 2222 22222 2233333 35666666543 267888889999999987776554555555643
No 188
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=47.99 E-value=2.5e+02 Score=29.21 Aligned_cols=53 Identities=30% Similarity=0.489 Sum_probs=31.7
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE-E--CCEEEEEcCCCCC
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE-L--NGVLYATGGYDGN 551 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~-~--~g~Lyv~GG~~~~ 551 (680)
+..+||+||.+. .++.||..|+.=. .......+++..++ + +|.+|..|-.++.
T Consensus 235 ~k~~fVaGged~-----~~~kfDy~TgeEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 235 KKEFFVAGGEDF-----KVYKFDYNTGEEI--GSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CCceEEecCcce-----EEEEEeccCCcee--eecccCCCCceEEEEECCCCceeeccCCCce
Confidence 446999999653 3567888877632 22222222322222 2 8999999877663
No 189
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=46.77 E-value=22 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=26.8
Q ss_pred CCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCCC
Q 005735 127 PHHFWFELDHSQASKLIALLSSMAIAPRACVPQN 160 (680)
Q Consensus 127 ~~~f~~~l~~~q~~~l~~lf~~~~~~~~~~~~~~ 160 (680)
..-|+-+||.+||+.|-.||.+.+--.+...|+.
T Consensus 45 ds~F~D~lTpDQVrAlHRlvTsSpe~d~~~a~aa 78 (92)
T PHA02681 45 ASSFEDKMTDDQVRAFHALVTSSPEDDPAPAPAA 78 (92)
T ss_pred CchhhccCCHHHHHHHHHHHhCCCCCCCCcCccc
Confidence 4578899999999999999999876554444444
No 190
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=46.69 E-value=3.9e+02 Score=28.49 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=39.5
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEE-EeCCCCeEEEcCCCCCCccceEEEEE-------CCEEEEEecCCCCCccceE
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLEL-YLPSCDVIKTLKPMSSARSYASAAML-------NGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~-yd~~t~~W~~l~~mp~~R~~~s~v~~-------~~~IyV~GG~~~~~~~~~v 463 (680)
.+.+.+++..++.||++.... +|. |.-..|.|..- +|+.|+. ++.||-.|- + .++
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~---LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt-D-----k~v 114 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIV---LWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT-D-----KTV 114 (338)
T ss_pred EEEECCCCCeEeecCCcceEE---EEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC-C-----ceE
Confidence 345566899999999864322 333 55566666654 4444333 344554443 2 468
Q ss_pred EEEeCCCCcE
Q 005735 464 ESYSPANDEW 473 (680)
Q Consensus 464 ~vyD~~t~~W 473 (680)
..+|.++++-
T Consensus 115 ~~wD~~tG~~ 124 (338)
T KOG0265|consen 115 RGWDAETGKR 124 (338)
T ss_pred EEEeccccee
Confidence 8999998864
No 191
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.40 E-value=4e+02 Score=28.49 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
+|.....||.+ ..+-+||+.+++=..++.--.+......+. .+-.+++.|-+++ .+-.||++... .+
T Consensus 83 dgskVf~g~~D-----k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK-----TlKfWD~R~~~--pv 150 (347)
T KOG0647|consen 83 DGSKVFSGGCD-----KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK-----TLKFWDTRSSN--PV 150 (347)
T ss_pred CCceEEeeccC-----CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc-----ceeecccCCCC--ee
Confidence 34333445544 346689999997666542222211111111 1223556666653 56667766432 33
Q ss_pred ccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 571 ANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 571 ~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
..+..|-..+++-+....+++.-+ -..+.+|+++..
T Consensus 151 ~t~~LPeRvYa~Dv~~pm~vVata------~r~i~vynL~n~ 186 (347)
T KOG0647|consen 151 ATLQLPERVYAADVLYPMAVVATA------ERHIAVYNLENP 186 (347)
T ss_pred eeeeccceeeehhccCceeEEEec------CCcEEEEEcCCC
Confidence 333333344444444333333322 234778887553
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.82 E-value=4.9e+02 Score=28.51 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=98.2
Q ss_pred CeEEEEeCCCCe-EEEcCCCCCCccceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEE
Q 005735 414 STLELYLPSCDV-IKTLKPMSSARSYASAAML---NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGA 489 (680)
Q Consensus 414 ~~v~~yd~~t~~-W~~l~~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~ 489 (680)
+.+.+.|..+++ ...++.. ...|..... +.++||.+. + ..+-++|+.+.+- +...+......+.+
T Consensus 16 ~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~--v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKV--VATIKVGGNPRGIA 84 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSE--EEEEE-SSEEEEEE
T ss_pred CEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccE--EEEEecCCCcceEE
Confidence 468888888765 3343332 222444433 568999863 2 3588999998863 22333333333333
Q ss_pred E-ECCEEEEEccCCCCcccceEEEEeCCCccEEE-c--cccc----ccccceEEEEECCEEEEEcCCCCCCcCceeEEEe
Q 005735 490 T-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR-T--RSML----QKRFALAAAELNGVLYATGGYDGNEYMNSAERFD 561 (680)
Q Consensus 490 v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~-i--~~~p----~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD 561 (680)
+ -+|+..+.+. ...+.+.++|.++.+=.. + ..++ .+|...-.+......|++.-.+ ...+++.|
T Consensus 85 ~s~DG~~~~v~n----~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVd 156 (369)
T PF02239_consen 85 VSPDGKYVYVAN----YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVD 156 (369)
T ss_dssp E--TTTEEEEEE----EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEE
T ss_pred EcCCCCEEEEEe----cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEE
Confidence 3 3665444332 234578889988765322 2 2222 2333222222345556654333 24788888
Q ss_pred CCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc---CCCCCCccceEEEEEC-CEE
Q 005735 562 PREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG---EPMKLSRGYLGAAVVK-EAI 636 (680)
Q Consensus 562 ~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v---~~lp~~R~~~s~v~~~-~~l 636 (680)
.....=..+..+...+..|-...- +++-|+.+-. . .+.+-+.|.+++.-..+ +.-|.+.....+...+ +.+
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-~---sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-G---SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-G---GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred eccccccceeeecccccccccccCcccceeeeccc-c---cceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 665432233334445555555444 3443433322 1 34788889887754432 3334443344444333 455
Q ss_pred EEEecc
Q 005735 637 YVIGGV 642 (680)
Q Consensus 637 yV~GG~ 642 (680)
+..+|.
T Consensus 233 w~~~~~ 238 (369)
T PF02239_consen 233 WATSGL 238 (369)
T ss_dssp EEEEBS
T ss_pred Eeeccc
Confidence 555554
No 193
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.62 E-value=4.5e+02 Score=28.11 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc--cceEEEEECCEEEEEcCCCCCCcC
Q 005735 479 LNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR--FALAAAELNGVLYATGGYDGNEYM 554 (680)
Q Consensus 479 lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r--~~~s~~~~~g~Lyv~GG~~~~~~~ 554 (680)
.|.|-..|+.+.. ...+.+|+-..+. -..+||+.+++=...-..+..| ++|++..-+|+++..--.+-..-.
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRPG~----~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRPGT----FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGR 76 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCCCc----EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCc
Q ss_pred ceeEEEeCCCCcEEEeccCC-CCCceeEEEEE-CC--EEEEEeccCCC-----------CCCCeEEEEeCCCCcEEEcCC
Q 005735 555 NSAERFDPREHYWTKIANMN-RRRGCHSLAVL-NG--KLYALGGFDGS-----------AMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 555 ~~v~~yD~~t~~W~~v~~~p-~~r~~~s~v~~-~~--~IyviGG~~~~-----------~~~~~v~~yD~~t~~W~~v~~ 619 (680)
.-|-+||.. ...+++...+ ....-|-+... ++ .++..||.... .+...+...|..+..-...-.
T Consensus 77 G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 77 GVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Q ss_pred CCCCccceEEEEE---CCEEEEEecccCC--CcccceEEEEcCC--CCeEecccCC-CCCcceeEEEEC
Q 005735 620 MKLSRGYLGAAVV---KEAIYVIGGVKNG--SEIVDTVERFKEG--QGWEEINSRA-IGKRCFMSVVTV 680 (680)
Q Consensus 620 lp~~R~~~s~v~~---~~~lyV~GG~~~~--~~~~~~ve~y~~~--~~W~~v~~~p-~~~r~~~sa~~~ 680 (680)
+|......++--+ ++-..++|..... .....-+..++.+ -+....+.-- ...+.|.++|++
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEE
No 194
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=42.56 E-value=4.2e+02 Score=27.71 Aligned_cols=215 Identities=19% Similarity=0.207 Sum_probs=95.3
Q ss_pred hhhhcccccceEEEcC-CCEEEEEecCC--CCcccCeEEEEe---CCCCeEEE--cCCCCC-------CccceEEEEECC
Q 005735 382 MYEKLLESSDELHLDP-SESIYLVGGCD--GDSWLSTLELYL---PSCDVIKT--LKPMSS-------ARSYASAAMLNG 446 (680)
Q Consensus 382 ~~~~p~~~~~~~~v~~-~~~Iyv~GG~~--~~~~~~~v~~yd---~~t~~W~~--l~~mp~-------~R~~~s~v~~~~ 446 (680)
.++.|.-.++|+++.. ++++|.+=-.. ....+.....|+ .....|+. |+..+. ...-|+.+.+++
T Consensus 67 H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~ 146 (367)
T PF12217_consen 67 HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDD 146 (367)
T ss_dssp -TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SS
T ss_pred CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecC
Confidence 3445554555555443 67777654321 122223334443 34566764 445554 456788899988
Q ss_pred EEEEEecCCCCCccceEEE--EeCC----CC-cEEECCC-CCCCCcccEEEEECCEEEEEccC-CCCcccceEEEEeCCC
Q 005735 447 ELYIFGGGDGNSWHNTVES--YSPA----ND-EWTSRPS-LNGTKGSLAGATIDNKIFAIGGG-NGLECFSDVEMLDLDI 517 (680)
Q Consensus 447 ~IyV~GG~~~~~~~~~v~v--yD~~----t~-~W~~l~~-lp~~r~~~a~~v~~gkIyV~GG~-~~~~~~~~ve~yD~~t 517 (680)
.-|.+|=.++......+-+ |... .. .-+.++. ....-+..+.-.++|++|+.--. .....-+.+.+-+...
T Consensus 147 ~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G 226 (367)
T PF12217_consen 147 NQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNG 226 (367)
T ss_dssp S-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTT
T ss_pred CceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccC
Confidence 8888886554333333222 2111 11 1122222 12222334556679999988543 3334456677888888
Q ss_pred ccEEEccccc-ccccceEEEEECCEEEEEcCC------CC----CCc----Ccee-EE-----EeCCCCcEEEeccC---
Q 005735 518 GKWIRTRSML-QKRFALAAAELNGVLYATGGY------DG----NEY----MNSA-ER-----FDPREHYWTKIANM--- 573 (680)
Q Consensus 518 ~~W~~i~~~p-~~r~~~s~~~~~g~Lyv~GG~------~~----~~~----~~~v-~~-----yD~~t~~W~~v~~~--- 573 (680)
..|+.+.-.. .-....-.+..++.||+||-- ++ ..+ ...+ .+ +.++.-+|..+.+-
T Consensus 227 ~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYq 306 (367)
T PF12217_consen 227 QNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQ 306 (367)
T ss_dssp SS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB-
T ss_pred CchhhccccccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceec
Confidence 8998875322 222334456789999999841 11 111 1111 11 35556678777432
Q ss_pred ----CCCCceeEEEEECCEEE-EEeccC
Q 005735 574 ----NRRRGCHSLAVLNGKLY-ALGGFD 596 (680)
Q Consensus 574 ----p~~r~~~s~v~~~~~Iy-viGG~~ 596 (680)
.......++++-++.|| ++||.+
T Consensus 307 G~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 307 GGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp -SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred cccccccccceeEEEECCEEEEEecCcc
Confidence 23334455666688875 556643
No 195
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=42.10 E-value=4.2e+02 Score=30.18 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=44.7
Q ss_pred EEEeCCCc----cEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-
Q 005735 511 EMLDLDIG----KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL- 585 (680)
Q Consensus 511 e~yD~~t~----~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~- 585 (680)
..||.... .|......|.. +-+..-.+..|++--|++. .+++||.....-...-.-..| .+.+.+
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~--gicfspsne~l~vsVG~Dk-----ki~~yD~~s~~s~~~l~y~~P---lstvaf~ 259 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCR--GICFSPSNEALLVSVGYDK-----KINIYDIRSQASTDRLTYSHP---LSTVAFS 259 (673)
T ss_pred EEEeccCCCcccchhhhccCCcC--cceecCCccceEEEecccc-----eEEEeecccccccceeeecCC---cceeeec
Confidence 34555433 24444433332 3334445888888888774 789999875432221111111 122222
Q ss_pred -CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 586 -NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 586 -~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
+|.++++|-. ...++.||++.
T Consensus 260 ~~G~~L~aG~s-----~G~~i~YD~R~ 281 (673)
T KOG4378|consen 260 ECGTYLCAGNS-----KGELIAYDMRS 281 (673)
T ss_pred CCceEEEeecC-----CceEEEEeccc
Confidence 4556666543 34577888754
No 196
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=41.76 E-value=1.6e+02 Score=33.60 Aligned_cols=108 Identities=22% Similarity=0.327 Sum_probs=62.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+.++.+++..+++||.++ .+++|........+...+...|..-+.+.+ ++..++.|-.. ..+-.||.
T Consensus 447 s~vAv~~~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-----rkvv~yd~ 516 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-----RKVVLYDV 516 (603)
T ss_pred ceEEEcCCCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-----CcEEEEEc
Confidence 5677888999999999875 377887776654444444444555555555 45555555433 34666776
Q ss_pred CCC-----cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCC
Q 005735 469 AND-----EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 517 (680)
Q Consensus 469 ~t~-----~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t 517 (680)
.++ .|.-. .+|-...+-.-+++++.-|+.+ ..+.+|+.+.
T Consensus 517 ~s~~~~~~~w~FH----takI~~~aWsP~n~~vATGSlD-----t~Viiysv~k 561 (603)
T KOG0318|consen 517 ASREVKTNRWAFH----TAKINCVAWSPNNKLVATGSLD-----TNVIIYSVKK 561 (603)
T ss_pred ccCceecceeeee----eeeEEEEEeCCCceEEEecccc-----ceEEEEEccC
Confidence 654 34211 2222222222367777777654 3466776654
No 197
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=41.36 E-value=10 Score=28.11 Aligned_cols=29 Identities=3% Similarity=-0.076 Sum_probs=20.9
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHhHhhhHHH
Q 005735 315 ETCSSSRCQSIINELIKEVAELKAFKTEQTLKMK 348 (680)
Q Consensus 315 ~~~~~r~~~~~l~~V~K~wrsl~~~~~i~s~el~ 348 (680)
+...+......++.|||+|+.+ ..++.++
T Consensus 13 f~~L~~~dl~~~~~vcr~w~~~-----~~~~~lW 41 (47)
T PF12937_consen 13 FSYLDPRDLLRLSLVCRRWRRI-----ANDNSLW 41 (47)
T ss_dssp HTTS-HHHHHHHTTSSHHHHHH-----HTCCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHH-----HCChhhh
Confidence 4555666777899999999999 6555443
No 198
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=40.69 E-value=4.4e+02 Score=27.44 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=82.7
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCC
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS 478 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~ 478 (680)
..|++..|++- .+..+...++.....-+-+-...+.-...-+++.++.+|.. .+..||..++.=..+..
T Consensus 10 ~viLvsA~YDh-----TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q------hvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 10 PVILVSAGYDH-----TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ------HVRLYDLNSNNPNPVAT 78 (311)
T ss_pred ceEEEeccCcc-----eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC------eeEEEEccCCCCCceeE
Confidence 35666666531 22333344444333222222222332333356666677753 58889998875111111
Q ss_pred CCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCCCcCc
Q 005735 479 LNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMN 555 (680)
Q Consensus 479 lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~ 555 (680)
.-..+.+-.++- .+|+-..-||.++. +-++|+..-.-...-..+.+ -...+.. +..=++.|-.+ .
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~qR~~~~~sp--Vn~vvlhpnQteLis~dqs-----g 146 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSCQRNYQHNSP--VNTVVLHPNQTELISGDQS-----G 146 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCce-----EEEEeccCcccchhccCCCC--cceEEecCCcceEEeecCC-----C
Confidence 112223333333 37776666776543 33555554221111111111 1112222 22223333333 3
Q ss_pred eeEEEeCCCCcEEEeccCCCCC-ceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 556 SAERFDPREHYWTKIANMNRRR-GCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 556 ~v~~yD~~t~~W~~v~~~p~~r-~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
.|+++|+.++...... +|... ..-++++ .+|+.++.+- + ...++++++-+
T Consensus 147 ~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~n-n----kG~cyvW~l~~ 198 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAAN-N----KGNCYVWRLLN 198 (311)
T ss_pred cEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEec-C----CccEEEEEccC
Confidence 7899999998765543 22222 2223333 3566544432 2 23466766655
No 199
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=40.20 E-value=4.9e+02 Score=27.74 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=90.4
Q ss_pred hhhhhccccc--ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEE---Ec-CCCCCCccceEEEEE-CCEEEEEec
Q 005735 381 CMYEKLLESS--DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIK---TL-KPMSSARSYASAAML-NGELYIFGG 453 (680)
Q Consensus 381 ~~~~~p~~~~--~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~---~l-~~mp~~R~~~s~v~~-~~~IyV~GG 453 (680)
+.+-+|.++. -.++..|.+.....||.+ +.+.+|+..+..=. ++ ..++....+-+++.+ ++.-++.|.
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGS 163 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecC
Confidence 3344444443 234555677888888876 35677877754222 11 234445555555554 433334443
Q ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCCcccEE-------EEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccc
Q 005735 454 GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAG-------ATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM 526 (680)
Q Consensus 454 ~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~-------~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~ 526 (680)
.+ .++-.+|.++..-... + .+|.+ .-.+++.||-||.+... ..+|.....-. ...
T Consensus 164 GD-----~TCalWDie~g~~~~~--f----~GH~gDV~slsl~p~~~ntFvSg~cD~~a-----klWD~R~~~c~--qtF 225 (343)
T KOG0286|consen 164 GD-----MTCALWDIETGQQTQV--F----HGHTGDVMSLSLSPSDGNTFVSGGCDKSA-----KLWDVRSGQCV--QTF 225 (343)
T ss_pred CC-----ceEEEEEcccceEEEE--e----cCCcccEEEEecCCCCCCeEEecccccce-----eeeeccCccee--Eee
Confidence 32 3566778877654322 1 12211 11167899999876442 34555544311 111
Q ss_pred ccccc-ceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEE--ECCEEEEEec
Q 005735 527 LQKRF-ALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV--LNGKLYALGG 594 (680)
Q Consensus 527 p~~r~-~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~--~~~~IyviGG 594 (680)
+.--. -.++..+ +|.-++.|--++ ..-.||++.++=..+-.-+...+....+. .-|+|+..|.
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~-----tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDA-----TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCc-----eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 11111 1112222 455555554332 45678888765444322222222223333 3677777664
No 200
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=39.28 E-value=7.6e+02 Score=29.72 Aligned_cols=159 Identities=15% Similarity=0.234 Sum_probs=81.8
Q ss_pred cceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEe
Q 005735 437 SYASAAMLN--GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLD 514 (680)
Q Consensus 437 ~~~s~v~~~--~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD 514 (680)
..-..++++ |.=+.+|+.. +..+-+|+-.++..-.-..-...+.......-+|.+++.|+.++. |-+||
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK-----VKvWn 378 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK-----VKVWN 378 (893)
T ss_pred ceeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc-----EEEEe
Confidence 333444554 6666677644 334666654444432111111223333333348889999987654 45666
Q ss_pred CCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCc-EEEeccCCCCCceeEEEEEC--CEE
Q 005735 515 LDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHY-WTKIANMNRRRGCHSLAVLN--GKL 589 (680)
Q Consensus 515 ~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~~~p~~r~~~s~v~~~--~~I 589 (680)
..++--... ....-.+.+++.+ .++..+-.-.+| .|-.||..... .+.. ..| .+..++++..+ |.|
T Consensus 379 ~~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTf-t~P-~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 379 TQSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTF-TSP-EPIQFSCVAVDPSGEL 449 (893)
T ss_pred ccCceEEEE--eccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeee-cCC-CceeeeEEEEcCCCCE
Confidence 665432211 1112223333222 455555444443 45566665432 2222 122 34566677776 889
Q ss_pred EEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 590 YALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 590 yviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
+++|+.+. -+|++++.++++-..+
T Consensus 450 V~AG~~d~----F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 450 VCAGAQDS----FEIFVWSVQTGQLLDI 473 (893)
T ss_pred EEeeccce----EEEEEEEeecCeeeeh
Confidence 99998652 3577888888766553
No 201
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=38.90 E-value=5.8e+02 Score=28.42 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=75.5
Q ss_pred cccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEE-EEECCEEEEEecCCCCCccceEEEE
Q 005735 388 ESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASA-AMLNGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 388 ~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~-v~~~~~IyV~GG~~~~~~~~~v~vy 466 (680)
.+...+...+.|+.+..+-++ .+.-.+|..+++--.+-.- ..+.-+.+ ...+|.|.+-||.+.- -.++
T Consensus 262 ~RVs~VafHPsG~~L~TasfD-----~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL~~tGGlD~~-----~RvW 330 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFD-----STWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGSLAATGGLDSL-----GRVW 330 (459)
T ss_pred hhheeeeecCCCceeeecccc-----cchhhcccccchhhHhhcc-cccccceeEecCCCceeeccCccch-----hhee
Confidence 344556666677777766553 1233455555431111111 11222222 3348999999997732 2345
Q ss_pred eCCCCcEEECCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE---ECCEE
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE---LNGVL 542 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~---~~g~L 542 (680)
|.++++=...-.- ..+.-++... -+|...+-||.++. +-++|+...+= +..||--..--+-+- -.|++
T Consensus 331 DlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt-----~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNT-----CKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred ecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCc-----EEEeeeccccc--ceecccccchhhheEecccCCeE
Confidence 6666543221000 1111122222 26677777765533 34566554331 223332111111111 24677
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANM 573 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~ 573 (680)
++.++++. .+-+|. +..|..+..|
T Consensus 403 L~TasyD~-----t~kiWs--~~~~~~~ksL 426 (459)
T KOG0272|consen 403 LVTASYDN-----TVKIWS--TRTWSPLKSL 426 (459)
T ss_pred EEEcccCc-----ceeeec--CCCcccchhh
Confidence 78777764 455563 5567777654
No 202
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=38.09 E-value=2.9e+02 Score=30.61 Aligned_cols=177 Identities=11% Similarity=0.009 Sum_probs=77.2
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCC------------------CCCccceEEEEeCCCCcE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGD------------------GNSWHNTVESYSPANDEW 473 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~------------------~~~~~~~v~vyD~~t~~W 473 (680)
..+...|..+.+=+.+-..|..-..+...++ ++..+ +|=.. .......+...|..+++.
T Consensus 102 ~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 3588888888776666555554433333333 23332 22110 023445677778888776
Q ss_pred EECCCCCCCCcccEEEEE---CCEEEEEccCCCCcc-cceEEEEeCCCccEEEcc-cccccccceEEEEECCE-EEEEcC
Q 005735 474 TSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLEC-FSDVEMLDLDIGKWIRTR-SMLQKRFALAAAELNGV-LYATGG 547 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~-~~~ve~yD~~t~~W~~i~-~~p~~r~~~s~~~~~g~-Lyv~GG 547 (680)
+.+-. .....+.... +..++++--...... ...+|..|.+......+. .++....+|---.-+|. |+..+.
T Consensus 181 ~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 181 KVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred eEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 55422 1111111111 334444422112222 347888888776655553 33333333333333553 444333
Q ss_pred CCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCC
Q 005735 548 YDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDG 597 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~ 597 (680)
..+ ....-+..||+.+..=+.+..|| .+.|-....++++++-.|.+.
T Consensus 258 ~~~-~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 258 TPG-GQDFWIAGYDPDTGERRRLMEMP--WCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp ETT-T--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred cCC-CCceEEEeeCCCCCCceEEEeCC--ceeeeEEcCCCCEEEecCCCC
Confidence 222 22234778999987645555554 477877888999998877653
No 203
>PHA02902 putative IMV membrane protein; Provisional
Probab=37.87 E-value=34 Score=27.45 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=27.6
Q ss_pred eeecCCCCCcchhHHhhcccCCCCCCCCCCHHHHHHHHHhcccC
Q 005735 106 MQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSSM 149 (680)
Q Consensus 106 ~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~~ 149 (680)
.+|-|-|.+.=+. ..+---+..-|+-+||..|+++|-.|+.+.
T Consensus 27 ~kci~sP~~~d~~-~~~~l~~d~~F~D~lTpDQirAlHrlvT~S 69 (70)
T PHA02902 27 YKCIPSPDDRDER-FGDTLEDDPLFKDSLTPDQIKALHRLVSLS 69 (70)
T ss_pred hcCCCCCCCcccc-ccccCCCCchhhccCCHHHHHHHHHHHhcc
Confidence 3566655332222 222112346789999999999999998763
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=37.83 E-value=3.2e+02 Score=29.38 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCc-EEECCCCCCCCcccEEEEECCEE--EEEccCCCCcccceEEEEeC-CCccEEEcccccccccceEE
Q 005735 460 HNTVESYSPANDE-WTSRPSLNGTKGSLAGATIDNKI--FAIGGGNGLECFSDVEMLDL-DIGKWIRTRSMLQKRFALAA 535 (680)
Q Consensus 460 ~~~v~vyD~~t~~-W~~l~~lp~~r~~~a~~v~~gkI--yV~GG~~~~~~~~~ve~yD~-~t~~W~~i~~~p~~r~~~s~ 535 (680)
..++.+|....+. |+....+..--..-.++-..-+. +|-++.+.+.+ ++.. ..++|....-+..--....+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay-----Vw~~~~~~~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY-----VWTQPSGGTWKPTLVLLRINRAATC 105 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc-----ccccCCCCeeccceeEEEeccceee
Q ss_pred EEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 536 AEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 536 ~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
+.. ++..+++|+ ...+-+|+.|+-+++=|..--.-..-|..-.+... ++-+...|+.++.-.+=+.++=+.+.
T Consensus 106 V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vde 182 (361)
T KOG1523|consen 106 VKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDE 182 (361)
T ss_pred EeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeecccc
Q ss_pred C
Q 005735 612 G 612 (680)
Q Consensus 612 ~ 612 (680)
+
T Consensus 183 k 183 (361)
T KOG1523|consen 183 K 183 (361)
T ss_pred C
No 205
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=37.60 E-value=4.4e+02 Score=27.46 Aligned_cols=123 Identities=21% Similarity=0.244 Sum_probs=62.6
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 540 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g 540 (680)
.+|..+|..|++-..--.++.+..+ .-+..+|.|+.+.. -+.+-.+|+.+-.=-+--.||.....+++- =+.
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~------gssV~Fwdaksf~~lKs~k~P~nV~SASL~-P~k 236 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAY------GSSVKFWDAKSFGLLKSYKMPCNVESASLH-PKK 236 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEec------CceeEEeccccccceeeccCcccccccccc-CCC
Confidence 4678888888764332222222221 12334666666532 134445555544322223455443332221 145
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCC--ceeEEEE-ECCEEEEEeccCCC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR--GCHSLAV-LNGKLYALGGFDGS 598 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r--~~~s~v~-~~~~IyviGG~~~~ 598 (680)
.+||.||-+. -+++||-.++. ++......- -.|++-. -+|.+|..|-.++.
T Consensus 237 ~~fVaGged~-----~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 237 EFFVAGGEDF-----KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ceEEecCcce-----EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 7999999654 46778877764 222221111 1222221 28999999877653
No 206
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=37.44 E-value=7.1e+02 Score=30.28 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccc-----cceEEEEECC------------------EEE
Q 005735 489 ATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKR-----FALAAAELNG------------------VLY 543 (680)
Q Consensus 489 ~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r-----~~~s~~~~~g------------------~Ly 543 (680)
++++++||+. ...+.+..+|..|++ |+.-+..+... .+-..+.+++ +||
T Consensus 191 lvvgg~lYv~------t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 191 LKVGDTLYLC------TPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred EEECCEEEEE------CCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE
Q ss_pred EEcCCCCCCcCceeEEEeCCCCc--EE-----------EeccCCCCCceeEE--EEECCEEEEEeccCCC----CCCCeE
Q 005735 544 ATGGYDGNEYMNSAERFDPREHY--WT-----------KIANMNRRRGCHSL--AVLNGKLYALGGFDGS----AMVPSI 604 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~--W~-----------~v~~~p~~r~~~s~--v~~~~~IyviGG~~~~----~~~~~v 604 (680)
+-..-. .++.+|.++++ |. .++..+......++ ++.++.||+-+...+. .....|
T Consensus 265 ~~T~Dg------~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 265 LPTSDA------RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred EecCCC------eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Q ss_pred EEEeCCCCc
Q 005735 605 EVYDPRLGS 613 (680)
Q Consensus 605 ~~yD~~t~~ 613 (680)
..||.++.+
T Consensus 339 ~A~Da~TGk 347 (764)
T TIGR03074 339 RAFDVNTGA 347 (764)
T ss_pred EEEECCCCc
No 207
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=3e+02 Score=27.94 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=65.4
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccc-cccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 487 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM-LQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 487 a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~-p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
+....+|.||.--|.-+ .+.+.++|+.+++=..-.++ |+..++-..+.+++.+|..-=.++ ..++||..+
T Consensus 50 GL~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~~t- 120 (262)
T COG3823 50 GLEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDADT- 120 (262)
T ss_pred ceeeeCCEEEEeccccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc-----eeEEEChHH-
Confidence 45566888888766543 46788999997763332233 345677788889999999853332 356777544
Q ss_pred cEEEeccCCCCCceeEEEEECCEEEEEec
Q 005735 566 YWTKIANMNRRRGCHSLAVLNGKLYALGG 594 (680)
Q Consensus 566 ~W~~v~~~p~~r~~~s~v~~~~~IyviGG 594 (680)
.+++...+.+..+.+++.-+..|++-.|
T Consensus 121 -~~~lg~~~y~GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 121 -LEELGRFSYEGEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred -hhhhcccccCCcceeeecCCcceEeeCC
Confidence 5566666666667777776667776666
No 208
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=35.97 E-value=9.2e+02 Score=30.25 Aligned_cols=167 Identities=10% Similarity=0.068 Sum_probs=91.7
Q ss_pred CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-----CCE-EEEEccCCCCc------ccceEEEEeCCC--ccEEE
Q 005735 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-----DNK-IFAIGGGNGLE------CFSDVEMLDLDI--GKWIR 522 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-----~gk-IyV~GG~~~~~------~~~~ve~yD~~t--~~W~~ 522 (680)
+.|.+.+.++|+.+++=..+-.++..-..++.+.. +.. +...|+..... ....++.|+... ++-+.
T Consensus 849 ~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel 928 (1205)
T KOG1898|consen 849 NGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL 928 (1205)
T ss_pred cCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee
Confidence 44778899999988765554444433333332222 222 44444432111 122366665543 23344
Q ss_pred cccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCC-CCceeEEEEECCEEEEEeccCCCCCC
Q 005735 523 TRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGSAMV 601 (680)
Q Consensus 523 i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~-~r~~~s~v~~~~~IyviGG~~~~~~~ 601 (680)
+.....+-.-++++-+.|++++--| +.+++||+-.++-.+...... +..-.+......+|+|-.-.+ .
T Consensus 929 lh~T~~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qe----S 997 (1205)
T KOG1898|consen 929 LHKTEIPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQE----S 997 (1205)
T ss_pred eeccCCCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccc----e
Confidence 4443444445567777786665333 467889887665443332222 222222333455665532221 1
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCccceEEEEECC
Q 005735 602 PSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 634 (680)
Q Consensus 602 ~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~ 634 (680)
-..+.|+++.+.-..+..-|.+|.-.++..++.
T Consensus 998 V~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 998 VHFVRYRREDNQLIVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred EEEEEEecCCCeEEEEeCCCccceeeEEEEecC
Confidence 235789999999999998899998877777753
No 209
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=35.97 E-value=28 Score=25.53 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=21.5
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHhHhhhHHHH
Q 005735 315 ETCSSSRCQSIINELIKEVAELKAFKTEQTLKMKE 349 (680)
Q Consensus 315 ~~~~~r~~~~~l~~V~K~wrsl~~~~~i~s~el~~ 349 (680)
++..+......++.|||+|+++ +.+..+..
T Consensus 15 l~~l~~~~~~~l~~vsk~~~~~-----~~~~~~~~ 44 (48)
T PF00646_consen 15 LSYLDPKDLLRLSLVSKRWRSL-----VDSPRLWK 44 (48)
T ss_dssp HHTS-HHHHHHHCTT-HHHHHH-----HTTHHHHH
T ss_pred HHHCcHHHHHHHHHHhhHHHHH-----HcCCCccH
Confidence 5566767788999999999999 66665543
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=35.85 E-value=5.8e+02 Score=27.41 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=84.2
Q ss_pred CCEEEEEecCC-CCCccceEEEEeCCCCcEEECCCCC------CCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCC
Q 005735 445 NGELYIFGGGD-GNSWHNTVESYSPANDEWTSRPSLN------GTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 517 (680)
Q Consensus 445 ~~~IyV~GG~~-~~~~~~~v~vyD~~t~~W~~l~~lp------~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t 517 (680)
-+.+-++||.. .....+.+.++|-...+=..-.... .-|..+-.+++.++|||+-=.+. +..+..+|.
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n---~k~l~~~et-- 132 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN---PKLLHVIET-- 132 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC---hhheeeeec--
Confidence 35566667665 5666789999995544321111111 11556677778888888732111 111222222
Q ss_pred ccEEEcccccccccceEEEE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcE---EEeccCCCCCceeEEEEE--CCEEEE
Q 005735 518 GKWIRTRSMLQKRFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYW---TKIANMNRRRGCHSLAVL--NGKLYA 591 (680)
Q Consensus 518 ~~W~~i~~~p~~r~~~s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W---~~v~~~p~~r~~~s~v~~--~~~Iyv 591 (680)
...|...++++- .+..++++=|... ..+.+.|+....- ..+.. --..-+++.+ .|.++.
T Consensus 133 --------~~NPkGlC~~~~~~~k~~LafPg~k~----GqvQi~dL~~~~~~~p~~I~A---H~s~Iacv~Ln~~Gt~vA 197 (346)
T KOG2111|consen 133 --------RSNPKGLCSLCPTSNKSLLAFPGFKT----GQVQIVDLASTKPNAPSIINA---HDSDIACVALNLQGTLVA 197 (346)
T ss_pred --------ccCCCceEeecCCCCceEEEcCCCcc----ceEEEEEhhhcCcCCceEEEc---ccCceeEEEEcCCccEEE
Confidence 122222222222 2456777766543 3566666654332 11111 1111233333 566666
Q ss_pred EeccCCCCCCCeEEEEeCCCCcEEE-cC-----------CCCCCccceEEEEECCEEEEEeccc
Q 005735 592 LGGFDGSAMVPSIEVYDPRLGSWMS-GE-----------PMKLSRGYLGAAVVKEAIYVIGGVK 643 (680)
Q Consensus 592 iGG~~~~~~~~~v~~yD~~t~~W~~-v~-----------~lp~~R~~~s~v~~~~~lyV~GG~~ 643 (680)
-+...| .-|.+||..+++-.. +- .+...-.+.+++.-.++|.||+=.+
T Consensus 198 TaStkG----TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 198 TASTKG----TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeccCc----EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 655433 236778887765432 11 0111222333334478899998544
No 211
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=35.54 E-value=6.9e+02 Score=28.14 Aligned_cols=132 Identities=16% Similarity=0.271 Sum_probs=61.4
Q ss_pred EEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-C--CEEEEEccCCCCcccceEEEEeCCC
Q 005735 441 AAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-D--NKIFAIGGGNGLECFSDVEMLDLDI 517 (680)
Q Consensus 441 ~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~--gkIyV~GG~~~~~~~~~ve~yD~~t 517 (680)
++..+++.+++||.+ ..+.++|+.+..=... +..-|..-++..+ . +.+|..+- -..+-+|+.+.
T Consensus 209 avS~Dgkylatgg~d-----~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~------Drsvkvw~~~~ 275 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRD-----RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA------DRSVKVWSIDQ 275 (479)
T ss_pred EEcCCCcEEEecCCC-----ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec------CCceEEEehhH
Confidence 344489999999976 3466777776532111 2222222222222 2 23666521 11222333332
Q ss_pred ccEEEcccccccccceEEEE------ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEE
Q 005735 518 GKWIRTRSMLQKRFALAAAE------LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYA 591 (680)
Q Consensus 518 ~~W~~i~~~p~~r~~~s~~~------~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~Iyv 591 (680)
... ....++|...+ -.++..-+||.+. ++-+|+..+.+ +.+-. +.....-+++.+++.=|+
T Consensus 276 ~s~------vetlyGHqd~v~~IdaL~reR~vtVGgrDr-----T~rlwKi~ees-qlifr-g~~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 276 LSY------VETLYGHQDGVLGIDALSRERCVTVGGRDR-----TVRLWKIPEES-QLIFR-GGEGSIDCVAFINDEHFV 342 (479)
T ss_pred hHH------HHHHhCCccceeeechhcccceEEeccccc-----eeEEEeccccc-eeeee-CCCCCeeeEEEeccccee
Confidence 221 11223332222 2467888888774 34444442211 11111 112223355667777788
Q ss_pred EeccCCC
Q 005735 592 LGGFDGS 598 (680)
Q Consensus 592 iGG~~~~ 598 (680)
.|..++.
T Consensus 343 sGSdnG~ 349 (479)
T KOG0299|consen 343 SGSDNGS 349 (479)
T ss_pred eccCCce
Confidence 8876654
No 212
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=35.13 E-value=8.3e+02 Score=29.40 Aligned_cols=98 Identities=13% Similarity=0.218 Sum_probs=47.1
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCc
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
+.++.++++.++.|.++ ++-++|..+.+=.+ .++.. +-+++..+ +++.++.|+.+| .+.+||+.+.
T Consensus 378 sl~vS~d~~~~~Sga~~-----SikiWn~~t~kciR--Ti~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS~ 444 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGE-----SIKIWNRDTLKCIR--TITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLASA 444 (888)
T ss_pred EEEeecCceeeeecCCC-----cEEEEEccCcceeE--Eeccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeehh
Confidence 34555667777666442 45566666543211 12211 34444445 556666666543 4678888765
Q ss_pred cEEEcccccccccceEEEEECCEEEEEcCCCC
Q 005735 519 KWIRTRSMLQKRFALAAAELNGVLYATGGYDG 550 (680)
Q Consensus 519 ~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~ 550 (680)
.--...+....-.+.-...-+++=++.||.+.
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 42111111111112222233566666666553
No 213
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.46 E-value=8.1e+02 Score=29.24 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=54.5
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 523 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i 523 (680)
=+.-|+++|... .+|..+|..++.-.++-.-.. +.-.+.+.. .|+..+-|+.++ .+..||+.+++- +
T Consensus 545 PNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~-----~I~iWDl~~~~~--v 612 (707)
T KOG0263|consen 545 PNSNYVATGSSD----RTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDEDG-----LIKIWDLANGSL--V 612 (707)
T ss_pred CcccccccCCCC----ceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccCC-----cEEEEEcCCCcc--h
Confidence 467888888443 356777777765433321111 111122222 566666666443 467888887652 1
Q ss_pred ccccccc--cceEEEEECCEEEEEcCCCCCCcCceeEEEeCCC
Q 005735 524 RSMLQKR--FALAAAELNGVLYATGGYDGNEYMNSAERFDPRE 564 (680)
Q Consensus 524 ~~~p~~r--~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t 564 (680)
..+..-. ...-....+|.++++||.+. ++-.||...
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-----sV~lWD~~~ 650 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGADN-----SVRLWDLTK 650 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCCCC-----eEEEEEchh
Confidence 1111111 11112244899999999774 566667543
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=31.31 E-value=4.6e+02 Score=25.66 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
+.++.++-|.. ...+..||.+ ...+...+........-.-+|+.+++||.++ ...++.+||.++ ++.+.
T Consensus 71 g~~favi~g~~----~~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n--~~G~l~~wd~~~--~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSM----PAKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGN--LNGDLEFWDVRK--KKKIS 139 (194)
T ss_pred CCEEEEEEccC----CcccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccC--CCcEEEEEECCC--CEEee
Confidence 45666664421 2368889886 3333333332222222223778888888653 236789999874 44444
Q ss_pred CC
Q 005735 619 PM 620 (680)
Q Consensus 619 ~l 620 (680)
..
T Consensus 140 ~~ 141 (194)
T PF08662_consen 140 TF 141 (194)
T ss_pred cc
Confidence 33
No 215
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=31.14 E-value=8.8e+02 Score=28.03 Aligned_cols=100 Identities=12% Similarity=0.004 Sum_probs=64.8
Q ss_pred CceeEEEeCCCCcEEEeccC--C-CCCceeEEEEECCEEEEEecc------CCCCCCCeEEEEeCCCCcEEEcCCCCCCc
Q 005735 554 MNSAERFDPREHYWTKIANM--N-RRRGCHSLAVLNGKLYALGGF------DGSAMVPSIEVYDPRLGSWMSGEPMKLSR 624 (680)
Q Consensus 554 ~~~v~~yD~~t~~W~~v~~~--p-~~r~~~s~v~~~~~IyviGG~------~~~~~~~~v~~yD~~t~~W~~v~~lp~~R 624 (680)
...|++|+......+.++.- | .-...+++-.++|.+-|+--. ......+.++++|..-+.--.+..+-..-
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la~gE 326 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLAPGE 326 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccCCCc
Confidence 34688898888777765432 2 223456777778877666432 23355678999997666677777776665
Q ss_pred cceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 625 GYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 625 ~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.-+++-.++++.|++-=. .++.+++.|.+
T Consensus 327 ~IysvRF~Gd~~Y~VTFr-----qvDPLfviDLs 355 (521)
T PF09826_consen 327 RIYSVRFMGDRAYLVTFR-----QVDPLFVIDLS 355 (521)
T ss_pred eEEEEEEeCCeEEEEEEe-----ecCceEEEECC
Confidence 566777789998888522 22446666543
No 216
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=30.96 E-value=8.4e+02 Score=27.77 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=91.5
Q ss_pred cCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCC--CcEEECCCCCCCCcccEE
Q 005735 413 LSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAN--DEWTSRPSLNGTKGSLAG 488 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t--~~W~~l~~lp~~r~~~a~ 488 (680)
..+++.++.+.++-+++.-. .|-..-++-+ ++.|+|.-...... ....+.|-... ..... + +-+-.+.
T Consensus 106 taDly~v~~e~Ge~kRiTyf--Gr~fT~VaG~~~dg~iiV~TD~~tPF-~q~~~lYkv~~dg~~~e~---L--nlGpath 177 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYF--GRRFTRVAGWIPDGEIIVSTDFHTPF-SQWTELYKVNVDGIKTEP---L--NLGPATH 177 (668)
T ss_pred cccEEEEeCCCCcEEEEEEe--ccccceeeccCCCCCEEEEeccCCCc-ccceeeeEEccCCceeee---c--cCCceee
Confidence 45788899898888877644 2333333333 67888876543211 11233333222 21222 1 2222334
Q ss_pred EEECCEEEEEccCCC---------CcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEE
Q 005735 489 ATIDNKIFAIGGGNG---------LECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAER 559 (680)
Q Consensus 489 ~v~~gkIyV~GG~~~---------~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~ 559 (680)
.++.+-+.|+|-... .+....+|+=.-...+++++-+|+....++ +.+++++|.+.-.++- ..++.
T Consensus 178 iv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P--mIV~~RvYFlsD~eG~---GnlYS 252 (668)
T COG4946 178 IVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP--MIVGERVYFLSDHEGV---GNLYS 252 (668)
T ss_pred EEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc--eEEcceEEEEecccCc---cceEE
Confidence 444444666654210 011223444333334566665666544433 4578999998765543 24555
Q ss_pred EeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 560 FDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 560 yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
-|+..+--++-..... +...-+..+|+-+++- ...++|.|||++..-+.+.
T Consensus 253 vdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq------~~GdIylydP~td~lekld 303 (668)
T COG4946 253 VDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQ------NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred eccCCchhhhcCCchh--ccccccCCCCcEEEEe------cCCcEEEeCCCcCcceeee
Confidence 5655433222222111 0111122355544442 1246899999998887754
No 217
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=30.43 E-value=5.9e+02 Score=28.57 Aligned_cols=149 Identities=7% Similarity=-0.049 Sum_probs=71.9
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECC
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN 493 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~g 493 (680)
..++..|..++.=..+...+..-...+..-.+.+|.+..-.++ ..++|++|..+..-.++......-. +-.-.-+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg---~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG---SPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC---CccEEEEcCCCCcceecccCCcccc-CccCCCCC
Confidence 4577777777665444332222222222222334433333332 2478999998876433333322222 22223355
Q ss_pred EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc-EEEec
Q 005735 494 KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY-WTKIA 571 (680)
Q Consensus 494 kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~ 571 (680)
+-+||.- + ..-...++++|++...=+.+..-..... +-...-+|+.+++-+..+.. ..+..+|+.++. |+.+.
T Consensus 294 ~~ivf~S-d-r~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 294 SKIVFTS-D-RGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred CEEEEEe-C-CCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 5334421 1 1123489999999876544432221111 11222244444443332111 568889988777 88774
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.36 E-value=1.1e+03 Score=29.58 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=94.2
Q ss_pred EEEcCC-CCCCccceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCccc----EEEEECCEEEE
Q 005735 426 IKTLKP-MSSARSYASAAML---NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSL----AGATIDNKIFA 497 (680)
Q Consensus 426 W~~l~~-mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~----a~~v~~gkIyV 497 (680)
|..+.. ++.+|..-.++-+ .|++|+.|+. ..+.++|..... .+.++|..-... ++-..+|.+++
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~------r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV------RSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCe------eEEEEEecccce--eEeecccCCCccceeecccccCCceEE
Confidence 555544 4455655433333 6889988873 457777776553 445555442221 22223567888
Q ss_pred EccCCCCcccceEEEEeCC-------CccEEEcccccccccceEEEEECCEE-EEEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 498 IGGGNGLECFSDVEMLDLD-------IGKWIRTRSMLQKRFALAAAELNGVL-YATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 498 ~GG~~~~~~~~~ve~yD~~-------t~~W~~i~~~p~~r~~~s~~~~~g~L-yv~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
.|-.+|. +-+||.. ...|+.-...+. ..+....-+|.- ++.|-.+| +|..+|++...=..
T Consensus 1226 AGfaDGs-----vRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~slq~~G~~elvSgs~~G-----~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1226 AGFADGS-----VRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSLQRQGLGELVSGSQDG-----DIQLLDLRMSSKET 1293 (1387)
T ss_pred EeecCCc-----eEEeecccCCccccceeecccCCccc--ceeEEeecCCCcceeeeccCC-----eEEEEecccCcccc
Confidence 8765554 3456543 223433322211 111111222222 23333333 67888887642111
Q ss_pred eccCCCCC--c--eeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC---CCCCccc--eEEEEECCEEEEE
Q 005735 570 IANMNRRR--G--CHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP---MKLSRGY--LGAAVVKEAIYVI 639 (680)
Q Consensus 570 v~~~p~~r--~--~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~---lp~~R~~--~s~v~~~~~lyV~ 639 (680)
.......+ + ..++.++ ...|+..|+. ..+.+|+...+.-..+.. .-..|.. .+++..--++.+.
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 11222222 1 1233344 4457777663 346778776654444321 1111222 2333344556666
Q ss_pred ecccCCCcccceEEEEcC
Q 005735 640 GGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 640 GG~~~~~~~~~~ve~y~~ 657 (680)
-|..+ ..|-+|..
T Consensus 1368 aG~~D-----s~V~iYs~ 1380 (1387)
T KOG1517|consen 1368 AGSAD-----STVSIYSC 1380 (1387)
T ss_pred hccCC-----ceEEEeec
Confidence 56544 35667754
No 219
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=29.72 E-value=6.5e+02 Score=26.08 Aligned_cols=183 Identities=18% Similarity=0.183 Sum_probs=96.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeC----CCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc-
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLP----SCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE- 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~----~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~- 472 (680)
+++++++.+..+ ..+..|.. ..+.+...-.+|.+-.+..-++.+|.+|.-.+. ...+-+||..+..
T Consensus 30 ~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~-----t~~ivky~l~~~~~ 100 (249)
T KOG3545|consen 30 DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG-----TRNIIKYDLETRTV 100 (249)
T ss_pred cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC-----CcceEEEEeeccee
Confidence 667888855432 33555544 333455555677777778888889888876543 2457788888743
Q ss_pred --EEECCCCCC---------CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCC----ccEEEcccccccccceEEEE
Q 005735 473 --WTSRPSLNG---------TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI----GKWIRTRSMLQKRFALAAAE 537 (680)
Q Consensus 473 --W~~l~~lp~---------~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t----~~W~~i~~~p~~r~~~s~~~ 537 (680)
|..+|.+.. +....-.++-++-++|+=-.........+-.+|+.+ .+|... .+. +....+..
T Consensus 101 ~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~k-~~~~~aF~ 177 (249)
T KOG3545|consen 101 AGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LPK-RSAGNAFM 177 (249)
T ss_pred eeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cCC-CCcCceEE
Confidence 444443211 111223445555577764433333233345677744 345322 222 22222333
Q ss_pred ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCcee-EEEEE---CCEEEEEe
Q 005735 538 LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCH-SLAVL---NGKLYALG 593 (680)
Q Consensus 538 ~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~-s~v~~---~~~IyviG 593 (680)
+=|.||++-....... .--+.||..+++=..+.-.-..+..+ +++-. +.+||+..
T Consensus 178 iCGvLY~v~S~~~~~~-~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 178 ICGVLYVVHSYNCTHT-QISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred EeeeeEEEeccccCCc-eEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEec
Confidence 3467888865443221 12278999887765443222233333 33322 56788874
No 220
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.88 E-value=5e+02 Score=24.51 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=48.0
Q ss_pred EEECCEEEEEccCCCCcccceEEEEeCCCccE-EEcccccccc----cceEE-EEECCEEEEEcCCCCCCcCceeEEEe-
Q 005735 489 ATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW-IRTRSMLQKR----FALAA-AELNGVLYATGGYDGNEYMNSAERFD- 561 (680)
Q Consensus 489 ~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W-~~i~~~p~~r----~~~s~-~~~~g~Lyv~GG~~~~~~~~~v~~yD- 561 (680)
+.++|.+|-++.........-+..||+.+.++ ..++ +|... ....+ ++.+++|-++--.. ....-+||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~-~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCD-ETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEecc-CCccEEEEEEee
Confidence 56788888887654433323689999999999 4443 33222 22333 23367887774211 12224677765
Q ss_pred --CCCCcEEEec
Q 005735 562 --PREHYWTKIA 571 (680)
Q Consensus 562 --~~t~~W~~v~ 571 (680)
-...+|+++-
T Consensus 80 ~~~~~~SWtK~~ 91 (164)
T PF07734_consen 80 YGYGKESWTKLF 91 (164)
T ss_pred eccCcceEEEEE
Confidence 2367899884
No 221
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=28.70 E-value=18 Score=38.03 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCCceEEE--EEeeeecCCCCCcchhHHhhcccCCCCCCCCCCHHHHHHHHHhcccCCC
Q 005735 95 SYPAQVQI--RVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSSMAI 151 (680)
Q Consensus 95 ~~paqv~~--~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~~~~ 151 (680)
+=||||.. .+....-|||-+.=..-|++|+ .-|.|+||.++.++|-.|+.+...
T Consensus 213 ~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~---~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 213 KTPAQVALRWHIQRGVIVIPKSTTPERIRENL---AAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CCHHHHHHHHHHhCCcEEecCCCCHHHHHHHH---hhhcCCCCHHHHHHHHhhccccCc
Confidence 34999855 4555578999999999999995 678899999999999999998754
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=28.59 E-value=8.6e+02 Score=27.10 Aligned_cols=190 Identities=8% Similarity=-0.035 Sum_probs=85.1
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEE--EeCCCC---cEEECCCCCCCCcccEE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVES--YSPAND---EWTSRPSLNGTKGSLAG 488 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~v--yD~~t~---~W~~l~~lp~~r~~~a~ 488 (680)
..+|+.+..+++-+++...+......+..-.+.+|.......+. .++++ ||..+. .-+.+..-.........
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~---~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~ 287 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGN---PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS 287 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCC---cceeEEEeecccCCCCcceEeecCCCCCcCCeE
Confidence 67999999988777776554433222111123455544322221 12333 454432 11112111111111122
Q ss_pred EEECCE-EEEEccCCCCcccceEEEEeCCCc-cE-EEcccccccccceEEEEECC-EEEEEcCCCCCCcCceeEEEeCCC
Q 005735 489 ATIDNK-IFAIGGGNGLECFSDVEMLDLDIG-KW-IRTRSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPRE 564 (680)
Q Consensus 489 ~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~-~W-~~i~~~p~~r~~~s~~~~~g-~Lyv~GG~~~~~~~~~v~~yD~~t 564 (680)
..-+|+ |+.....++ ...++.++.... .. ..+......-..+ ...-+| +|+..+..++ ...+++||+.+
T Consensus 288 wSPDG~~Laf~s~~~g---~~~ly~~~~~~~g~~~~~lt~~~~~~~~p-~wSPDG~~Laf~~~~~g---~~~I~v~dl~~ 360 (428)
T PRK01029 288 FSPDGTRLVFVSNKDG---RPRIYIMQIDPEGQSPRLLTKKYRNSSCP-AWSPDGKKIAFCSVIKG---VRQICVYDLAT 360 (428)
T ss_pred ECCCCCEEEEEECCCC---CceEEEEECcccccceEEeccCCCCccce-eECCCCCEEEEEEcCCC---CcEEEEEECCC
Confidence 223565 443322222 135667766421 11 1121111110111 112244 4554443222 24799999999
Q ss_pred CcEEEeccCCCCCceeEEE-EECCE-EEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 565 HYWTKIANMNRRRGCHSLA-VLNGK-LYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 565 ~~W~~v~~~p~~r~~~s~v-~~~~~-IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
++.+.+...+.. ..... .-+++ |++.....+ ...++.+|+.++....+.
T Consensus 361 g~~~~Lt~~~~~--~~~p~wSpDG~~L~f~~~~~g---~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 361 GRDYQLTTSPEN--KESPSWAIDSLHLVYSAGNSN---ESELYLISLITKKTRKIV 411 (428)
T ss_pred CCeEEccCCCCC--ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 988877543211 11122 22444 444433221 256889999888777664
No 223
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.30 E-value=7.6e+02 Score=26.43 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECC
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~ 477 (680)
+.++| .||.+ ..+-.+|..++.-..++
T Consensus 84 gskVf-~g~~D-----k~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 84 GSKVF-SGGCD-----KQAKLWDLASGQVSQVA 110 (347)
T ss_pred CceEE-eeccC-----CceEEEEccCCCeeeee
Confidence 34454 45554 35778899988765553
No 224
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.56 E-value=6.8e+02 Score=28.09 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=71.2
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEE-ccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAI-GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 539 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~-GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~ 539 (680)
..++++|..++.=..+.+.+..-..++. .-+|+-+++ .-.+ -..+++.+|+.+..=..+......-..++...-+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~f-spDG~~l~f~~~rd---g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAF-SPDGSKLAFSSSRD---GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccC-CCCCCEEEEEECCC---CCccEEEEcCCCCcceecccCCccccCccCCCCC
Confidence 3466677766654444332222122222 223343333 2222 2357888998877622222222111122222234
Q ss_pred CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc-EEEcC
Q 005735 540 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS-WMSGE 618 (680)
Q Consensus 540 g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~-W~~v~ 618 (680)
.+|+..-...+ ...|+++|++..+=+++..-..... +....-+++.+++-+..+.. -++..+|+.++. |+.+.
T Consensus 294 ~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 294 SKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred CEEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 45555533222 2389999998887666642222111 22222244444443333222 568899998777 88764
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.10 E-value=8.8e+02 Score=26.78 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=70.0
Q ss_pred CEEEEEecCCCCCccceEEEEeCCC--CcEEECCC------CCCCCcccEEEEECC---EEEEEccCCCCcccceEEEEe
Q 005735 446 GELYIFGGGDGNSWHNTVESYSPAN--DEWTSRPS------LNGTKGSLAGATIDN---KIFAIGGGNGLECFSDVEMLD 514 (680)
Q Consensus 446 ~~IyV~GG~~~~~~~~~v~vyD~~t--~~W~~l~~------lp~~r~~~a~~v~~g---kIyV~GG~~~~~~~~~ve~yD 514 (680)
..|+.+||... .+.+.+||... ..|+.-.. |-.|.+-..+..+.+ .-|+-+ ..++.+-.||
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-----T~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-----TRYHQVRLYD 232 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-----ecceeEEEec
Confidence 46777888653 34455666554 45643211 112223333333333 222221 2356678899
Q ss_pred CCCccE--EEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECC-EEEE
Q 005735 515 LDIGKW--IRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG-KLYA 591 (680)
Q Consensus 515 ~~t~~W--~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~-~Iyv 591 (680)
+..++= ..++.+..+....+... ++.+.++|- ....+..||.+.+.--...--......-++..+.+ .++.
T Consensus 233 t~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn-----~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la 306 (412)
T KOG3881|consen 233 TRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGN-----TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA 306 (412)
T ss_pred CcccCcceeEeccccCcceeeeecC-CCcEEEEec-----ccchhheecccCceeeccccCCccCCcceEEEcCCCceEE
Confidence 997761 11122222333222222 344444443 33467889988765322211111111122333433 6777
Q ss_pred EeccCCCCCCCeEEEEeCCC
Q 005735 592 LGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 592 iGG~~~~~~~~~v~~yD~~t 611 (680)
.+|.+. -+-+||.++
T Consensus 307 s~GLDR-----yvRIhD~kt 321 (412)
T KOG3881|consen 307 SCGLDR-----YVRIHDIKT 321 (412)
T ss_pred eeccce-----eEEEeeccc
Confidence 788652 367888876
No 226
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=26.66 E-value=5.4e+02 Score=27.61 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=55.1
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE----CCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML----NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~----~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
+.++-+.|..+++|-. .+.+..||..|-+.-.-.. |....--+++.+ .++|||.|..++ .+-.+|
T Consensus 221 siSfHPsGefllvgTd-----Hp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-----~IklwD 289 (430)
T KOG0640|consen 221 SISFHPSGEFLLVGTD-----HPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG-----AIKLWD 289 (430)
T ss_pred eEeecCCCceEEEecC-----CCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC-----cEEeec
Confidence 4556668888888853 4568889998876543322 333332233333 689999998775 366677
Q ss_pred CCCCcEEECCCCCCCCcccEE--EEE--CCEEEEEccCC
Q 005735 468 PANDEWTSRPSLNGTKGSLAG--ATI--DNKIFAIGGGN 502 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~--~v~--~gkIyV~GG~~ 502 (680)
-.+++- +..+..++.+... +++ ++|.++-.|.+
T Consensus 290 GVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 290 GVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred cccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 766642 1122333333322 222 66666655543
No 227
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=25.49 E-value=8.7e+02 Score=26.14 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=30.6
Q ss_pred ceEEEEeCCCccEEEcccccccccceE--EEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcE
Q 005735 508 SDVEMLDLDIGKWIRTRSMLQKRFALA--AAEL--NGVLYATGGYDGNEYMNSAERFDPREHYW 567 (680)
Q Consensus 508 ~~ve~yD~~t~~W~~i~~~p~~r~~~s--~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W 567 (680)
+.+..||..|-+--.-.. |......+ .+-+ .++||+.|..+| .|-+||-.++..
T Consensus 238 p~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-----~IklwDGVS~rC 295 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG-----AIKLWDGVSNRC 295 (430)
T ss_pred CceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC-----cEEeeccccHHH
Confidence 456688888766332222 33221112 2222 689999998776 466777665543
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.30 E-value=1.2e+03 Score=27.75 Aligned_cols=49 Identities=24% Similarity=0.423 Sum_probs=28.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCc--cceEEEEECCEEEEEecCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSAR--SYASAAMLNGELYIFGGGD 455 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R--~~~s~v~~~~~IyV~GG~~ 455 (680)
+..+++..| +.+++||+..+... .++-... .+..+-.-+|+.|.-||.+
T Consensus 24 GsqL~lAAg-------~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 24 GTQLILAAG-------SRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CceEEEecC-------CEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCc
Confidence 445666655 46999999987632 2232222 2222333388888888854
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.02 E-value=8.2e+02 Score=27.01 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=69.5
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCC--CeEEEcCC------CCCCccceEEEEEC---CEEEEEecCCCCCccceEEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSC--DVIKTLKP------MSSARSYASAAMLN---GELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t--~~W~~l~~------mp~~R~~~s~v~~~---~~IyV~GG~~~~~~~~~v~vy 466 (680)
...|+.+||..+ .+.+.+||... ..|.--.. |-.|-....+..+. ...|+.+- .+..+-.|
T Consensus 160 ~p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~Y 231 (412)
T KOG3881|consen 160 DPYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLY 231 (412)
T ss_pred CCceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEe
Confidence 556888899643 34455555544 45654321 11222333333332 23444332 23568899
Q ss_pred eCCCCcEEECCCCCCCCcccEEEE---ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC-CEE
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGAT---IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN-GVL 542 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v---~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~-g~L 542 (680)
|+...+- .+..++..-...++.. -++.||+ |- ....+-.||..+++--...--...-...+...+. ..+
T Consensus 232 Dt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy~-gn-----~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~ 304 (412)
T KOG3881|consen 232 DTRHQRR-PVAQFDFLENPISSTGLTPSGNFIYT-GN-----TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPV 304 (412)
T ss_pred cCcccCc-ceeEeccccCcceeeeecCCCcEEEE-ec-----ccchhheecccCceeeccccCCccCCcceEEEcCCCce
Confidence 9986542 2222222222222222 2444555 32 2345667888877632111000011111222333 357
Q ss_pred EEEcCCCCCCcCceeEEEeCCCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
...+|.+. -+-+||..+.
T Consensus 305 las~GLDR-----yvRIhD~ktr 322 (412)
T KOG3881|consen 305 LASCGLDR-----YVRIHDIKTR 322 (412)
T ss_pred EEeeccce-----eEEEeecccc
Confidence 77777763 4667887774
No 230
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=24.79 E-value=1.1e+03 Score=27.25 Aligned_cols=162 Identities=16% Similarity=0.199 Sum_probs=79.6
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCccc-EEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSL-AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 539 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~-a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~ 539 (680)
.++.+++..++.--.+ ....... -++.+++.+.|.|..++ .+-+||+.+.+- +..+..--..-....++
T Consensus 311 ~tVkVW~v~n~~~l~l---~~~h~~~V~~v~~~~~~lvsgs~d~-----~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNL---LRGHTGPVNCVQLDEPLLVSGSYDG-----TVKVWDPRTGKC--LKSLSGHTGRVYSLIVD 380 (537)
T ss_pred ceEEEEeccCcceEEE---eccccccEEEEEecCCEEEEEecCc-----eEEEEEhhhcee--eeeecCCcceEEEEEec
Confidence 5688888775543222 1111122 23444677777776543 466777775542 22221100011122345
Q ss_pred C-EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 540 G-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 540 g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
+ ..++-|+.+ ..|-++|+.+.. +.+-.+......-....+.+.+++-+..++ .|.++|..++.=..+-
T Consensus 381 ~~~~~~Sgs~D-----~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~-----~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 381 SENRLLSGSLD-----TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG-----TIKLWDAEEGECLRTL 449 (537)
T ss_pred CcceEEeeeec-----cceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccc-----cEEEeecccCceeeee
Confidence 5 555555555 367888887764 233222222222222333566667666553 5777787776655443
Q ss_pred CCCCCccceEEEEECCEEEEEecccC
Q 005735 619 PMKLSRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 619 ~lp~~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
.-+ ......+...+...++..+.++
T Consensus 450 ~~~-~~~~v~~l~~~~~~il~s~~~~ 474 (537)
T KOG0274|consen 450 EGR-HVGGVSALALGKEEILCSSDDG 474 (537)
T ss_pred ccC-CcccEEEeecCcceEEEEecCC
Confidence 222 2233333334446666666554
No 231
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=23.81 E-value=1.5e+03 Score=28.29 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=95.6
Q ss_pred CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE------C-CEEEEEccC----CCCc-ccceEEEEeCCC-ccEEEc
Q 005735 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI------D-NKIFAIGGG----NGLE-CFSDVEMLDLDI-GKWIRT 523 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~------~-gkIyV~GG~----~~~~-~~~~ve~yD~~t-~~W~~i 523 (680)
......+.+||..|- +.+......+.-.+..++ + +..|+.|-. +... ....+.+|.... ++-+.+
T Consensus 746 e~~~s~l~vlD~nTf--~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v 823 (1096)
T KOG1897|consen 746 EYEVSFLRVLDQNTF--EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELV 823 (1096)
T ss_pred cceEEEEEEecCCce--eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeee
Confidence 445566777877654 344333333333332222 2 557777652 1111 223466665555 666666
Q ss_pred ccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEE----EECCEEEEEeccCCCC
Q 005735 524 RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLA----VLNGKLYALGGFDGSA 599 (680)
Q Consensus 524 ~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v----~~~~~IyviGG~~~~~ 599 (680)
..+...-...+++.+||++.+-=| ..+-.|+..+++ ++- +-.....+..+ +.++.|++..=. .
T Consensus 824 ~e~~v~Gav~aL~~fngkllA~In-------~~vrLye~t~~~--eLr-~e~~~~~~~~aL~l~v~gdeI~VgDlm-~-- 890 (1096)
T KOG1897|consen 824 AETVVKGAVYALVEFNGKLLAGIN-------QSVRLYEWTTER--ELR-IECNISNPIIALDLQVKGDEIAVGDLM-R-- 890 (1096)
T ss_pred eeeeeccceeehhhhCCeEEEecC-------cEEEEEEccccc--eeh-hhhcccCCeEEEEEEecCcEEEEeecc-c--
Confidence 666666566677788888766322 467777755541 110 01111222222 336676664321 1
Q ss_pred CCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEec
Q 005735 600 MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGG 641 (680)
Q Consensus 600 ~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG 641 (680)
.-.+..|+...+....++.--.|+...++..+++..|+.+-
T Consensus 891 -Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 891 -SITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAE 931 (1096)
T ss_pred -eEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeec
Confidence 23467899888889999887778887788788888777654
No 232
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=22.07 E-value=7.9e+02 Score=24.46 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=43.7
Q ss_pred cceEEEEeCCCCcEEECCCCCCC-Cccc-EEEEECC-E-EEEEccCCCCc-ccceEEEEeCCCccEEEcccccccccceE
Q 005735 460 HNTVESYSPANDEWTSRPSLNGT-KGSL-AGATIDN-K-IFAIGGGNGLE-CFSDVEMLDLDIGKWIRTRSMLQKRFALA 534 (680)
Q Consensus 460 ~~~v~vyD~~t~~W~~l~~lp~~-r~~~-a~~v~~g-k-IyV~GG~~~~~-~~~~ve~yD~~t~~W~~i~~~p~~r~~~s 534 (680)
...+|++|..++.|..+..-+.. ...+ -+..+++ . ++++|...+.- .-..+++|++.++.-..+.+.....-...
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQVi 166 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQVI 166 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccceeEE
Confidence 45678888887777654221111 1111 2334443 3 55666433222 23568999999999888877665443333
Q ss_pred EEEE
Q 005735 535 AAEL 538 (680)
Q Consensus 535 ~~~~ 538 (680)
.+..
T Consensus 167 s~e~ 170 (200)
T PF15525_consen 167 SAEK 170 (200)
T ss_pred EEEE
Confidence 3333
No 233
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.88 E-value=1.4e+03 Score=26.99 Aligned_cols=76 Identities=26% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCccceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCcEEECC--------CCC-CCCcc-cEEEEE-CCEEEEEc
Q 005735 434 SARSYASAAML---NGELYIFGGGDGNSWHNTVESYSPANDEWTSRP--------SLN-GTKGS-LAGATI-DNKIFAIG 499 (680)
Q Consensus 434 ~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~--------~lp-~~r~~-~a~~v~-~gkIyV~G 499 (680)
..+.|-.+.++ ++.+++-||.+. .++++|..+.+=+.+. +++ .++-. ++.+.- .+.++|-|
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred cccchheeeeecccCceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 33444444433 778888898773 4677776655322211 222 22221 222222 34688888
Q ss_pred cCCCCcccceEEEEeCCCcc
Q 005735 500 GGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 500 G~~~~~~~~~ve~yD~~t~~ 519 (680)
|.+ .++..||+.+.+
T Consensus 190 gte-----k~lr~wDprt~~ 204 (735)
T KOG0308|consen 190 GTE-----KDLRLWDPRTCK 204 (735)
T ss_pred Ccc-----cceEEecccccc
Confidence 754 567789999876
No 234
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.62 E-value=7.3e+02 Score=29.60 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=53.2
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
..+-+.-|+++|... ..+-.||..++.-.++-.- +.+...+++.. .|+-.+.|+.+ ..|.+||+.+.+-
T Consensus 542 ~FHPNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed-----~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSD----RTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDED-----GLIKIWDLANGSL 611 (707)
T ss_pred EECCcccccccCCCC----ceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccC-----CcEEEEEcCCCcc
Confidence 344567888888443 3577888888776666422 22223333332 56655556544 3477888876332
Q ss_pred E-EcCCCCCCccceEEEEECCEEEEEecccCC
Q 005735 615 M-SGEPMKLSRGYLGAAVVKEAIYVIGGVKNG 645 (680)
Q Consensus 615 ~-~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~ 645 (680)
. .+-.- ..-.+.-.-..++.+++.||.+++
T Consensus 612 v~~l~~H-t~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 612 VKQLKGH-TGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred hhhhhcc-cCceeEEEEecCCCEEEecCCCCe
Confidence 1 11111 111111111348899999998764
No 235
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.27 E-value=1.4e+03 Score=27.10 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=41.0
Q ss_pred cCCCEEEEEecCCCCcccCeEEEEeCCCCeE------EEcC--CCC-CCc-cceEEEEE-CCEEEEEecCCCCCccceEE
Q 005735 396 DPSESIYLVGGCDGDSWLSTLELYLPSCDVI------KTLK--PMS-SAR-SYASAAML-NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W------~~l~--~mp-~~R-~~~s~v~~-~~~IyV~GG~~~~~~~~~v~ 464 (680)
..++.+++.||.+. .++.+|..+..= ..++ .++ .++ .-++.++- .+.++|-||.. ..+.
T Consensus 127 ak~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 127 AKNNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred ccCceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 45788999999864 466677665522 1221 233 233 33445444 34688888765 4688
Q ss_pred EEeCCCCc
Q 005735 465 SYSPANDE 472 (680)
Q Consensus 465 vyD~~t~~ 472 (680)
+|||++.+
T Consensus 197 ~wDprt~~ 204 (735)
T KOG0308|consen 197 LWDPRTCK 204 (735)
T ss_pred Eecccccc
Confidence 99999874
Done!