Query 005735
Match_columns 680
No_of_seqs 394 out of 2367
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 3.9E-46 1.3E-50 393.0 37.0 293 385-680 11-308 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 4.6E-45 1.6E-49 382.9 37.5 283 395-680 12-298 (302)
3 2vpj_A Kelch-like protein 12; 100.0 8.8E-45 3E-49 380.2 35.5 282 397-680 13-299 (301)
4 3ii7_A Kelch-like protein 7; p 100.0 7.5E-45 2.6E-49 382.0 34.8 277 398-680 11-293 (306)
5 4asc_A Kelch repeat and BTB do 100.0 1.3E-41 4.5E-46 359.3 29.8 271 398-679 4-295 (315)
6 2woz_A Kelch repeat and BTB do 100.0 8.4E-41 2.9E-45 353.6 29.3 273 398-680 15-306 (318)
7 2xn4_A Kelch-like protein 2; s 100.0 4.4E-40 1.5E-44 345.0 32.8 259 378-636 41-302 (302)
8 2uvk_A YJHT; unknown function, 100.0 4.5E-40 1.5E-44 353.1 29.2 284 382-669 3-353 (357)
9 1zgk_A Kelch-like ECH-associat 100.0 1.9E-39 6.4E-44 342.0 30.8 255 378-632 50-308 (308)
10 3ii7_A Kelch-like protein 7; p 100.0 2.5E-39 8.5E-44 339.9 28.6 256 378-634 35-295 (306)
11 2vpj_A Kelch-like protein 12; 100.0 4.4E-39 1.5E-43 336.9 28.8 256 378-633 42-300 (301)
12 4asc_A Kelch repeat and BTB do 100.0 1E-38 3.4E-43 337.2 25.7 256 386-643 33-307 (315)
13 2woz_A Kelch repeat and BTB do 100.0 4.6E-38 1.6E-42 332.6 27.5 253 387-641 45-315 (318)
14 2uvk_A YJHT; unknown function, 100.0 1.8E-35 6.2E-40 317.3 27.3 247 428-679 2-314 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 9.9E-34 3.4E-38 331.4 27.7 268 383-656 383-691 (695)
16 1k3i_A Galactose oxidase precu 100.0 1.6E-33 5.6E-38 327.5 19.3 295 378-679 177-517 (656)
17 2zwa_A Leucine carboxyl methyl 100.0 2.4E-31 8.4E-36 311.1 26.6 250 424-679 377-662 (695)
18 1k3i_A Galactose oxidase precu 100.0 6.5E-30 2.2E-34 297.2 21.9 275 379-658 231-548 (656)
19 1p22_A F-BOX/WD-repeat protein 98.3 0.00012 4E-09 79.3 25.0 227 392-657 136-363 (435)
20 3dsm_A Uncharacterized protein 98.1 0.0042 1.4E-07 64.8 32.1 218 413-658 16-252 (328)
21 3dsm_A Uncharacterized protein 98.1 0.00062 2.1E-08 71.2 25.6 233 397-658 52-301 (328)
22 3v7d_B Cell division control p 98.1 0.00034 1.2E-08 75.8 22.8 226 396-658 129-380 (464)
23 3jrp_A Fusion protein of prote 98.0 0.00062 2.1E-08 70.7 22.8 248 391-669 15-299 (379)
24 2ovr_B FBW7, F-BOX/WD repeat p 98.0 0.00059 2E-08 73.8 22.8 223 395-658 125-347 (445)
25 3mbr_X Glutamine cyclotransfer 97.7 0.013 4.3E-07 59.0 24.2 188 436-644 21-226 (243)
26 1k8k_C P40, ARP2/3 complex 41 97.6 0.007 2.4E-07 62.6 23.0 246 389-668 10-286 (372)
27 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.053 1.8E-06 56.9 30.0 222 398-664 53-304 (376)
28 4ery_A WD repeat-containing pr 97.5 0.016 5.3E-07 59.0 23.5 231 391-658 27-267 (312)
29 1l0q_A Surface layer protein; 97.5 0.0031 1.1E-07 66.2 18.2 185 399-616 2-194 (391)
30 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.068 2.3E-06 56.1 28.0 204 398-640 143-366 (376)
31 3jro_A Fusion protein of prote 97.4 0.0027 9.4E-08 74.2 18.5 246 393-669 15-297 (753)
32 3nol_A Glutamine cyclotransfer 97.4 0.014 4.7E-07 59.4 20.9 185 439-644 46-247 (262)
33 3mbr_X Glutamine cyclotransfer 97.4 0.028 9.7E-07 56.4 22.8 181 392-594 25-223 (243)
34 1q7f_A NHL, brain tumor CG1071 97.4 0.14 4.9E-06 51.0 29.1 235 391-657 33-278 (286)
35 1l0q_A Surface layer protein; 97.4 0.006 2.1E-07 64.0 18.3 229 391-658 35-274 (391)
36 3dwl_C Actin-related protein 2 97.3 0.0034 1.2E-07 65.6 16.1 247 390-668 14-291 (377)
37 2z2n_A Virginiamycin B lyase; 97.3 0.13 4.4E-06 51.2 27.1 231 390-658 17-254 (299)
38 2pm7_B Protein transport prote 97.3 0.025 8.7E-07 57.4 22.1 244 392-667 14-295 (297)
39 2qc5_A Streptogramin B lactona 97.3 0.16 5.4E-06 50.5 27.8 236 389-662 21-263 (300)
40 3ow8_A WD repeat-containing pr 97.3 0.029 9.9E-07 58.0 22.1 226 393-656 86-318 (321)
41 2z2n_A Virginiamycin B lyase; 97.2 0.18 6.3E-06 50.0 27.1 229 391-658 60-294 (299)
42 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.023 7.8E-07 61.1 21.4 220 400-658 170-390 (445)
43 3bg1_A Protein SEC13 homolog; 97.2 0.009 3.1E-07 61.5 17.4 247 392-671 18-307 (316)
44 4ery_A WD repeat-containing pr 97.2 0.071 2.4E-06 54.0 24.0 192 392-613 70-270 (312)
45 1rwi_B Serine/threonine-protei 97.2 0.047 1.6E-06 53.9 22.1 233 389-658 25-263 (270)
46 1got_B GT-beta; complex (GTP-b 97.2 0.063 2.1E-06 55.6 23.9 230 391-657 59-299 (340)
47 1ri6_A Putative isomerase YBHE 97.2 0.092 3.1E-06 53.2 24.3 249 391-670 41-322 (343)
48 2ynn_A Coatomer subunit beta'; 97.2 0.071 2.4E-06 54.2 23.4 230 391-657 17-257 (304)
49 3nol_A Glutamine cyclotransfer 97.1 0.059 2E-06 54.6 22.0 182 391-594 46-244 (262)
50 3f3f_A Nucleoporin SEH1; struc 97.1 0.052 1.8E-06 54.7 21.8 196 391-611 15-249 (351)
51 3bws_A Protein LP49; two-domai 97.1 0.078 2.7E-06 56.2 24.0 235 392-657 174-430 (433)
52 2qc5_A Streptogramin B lactona 97.1 0.21 7.2E-06 49.5 25.9 218 391-640 65-289 (300)
53 3zwl_B Eukaryotic translation 97.1 0.043 1.5E-06 56.2 21.2 227 391-644 36-281 (369)
54 3vgz_A Uncharacterized protein 97.1 0.22 7.6E-06 50.7 26.6 235 392-658 45-302 (353)
55 3mkq_A Coatomer beta'-subunit; 97.1 0.034 1.1E-06 64.5 22.5 231 390-658 16-258 (814)
56 1p22_A F-BOX/WD-repeat protein 97.1 0.0098 3.4E-07 64.0 16.7 224 395-658 179-413 (435)
57 1got_B GT-beta; complex (GTP-b 97.1 0.12 4.2E-06 53.3 24.6 221 392-644 102-334 (340)
58 3ow8_A WD repeat-containing pr 97.1 0.052 1.8E-06 56.0 21.4 225 399-658 48-278 (321)
59 2iwa_A Glutamine cyclotransfer 97.1 0.11 3.9E-06 52.8 23.3 195 391-611 24-237 (266)
60 3vgz_A Uncharacterized protein 97.0 0.31 1.1E-05 49.6 27.0 221 392-642 93-334 (353)
61 1gxr_A ESG1, transducin-like e 97.0 0.057 2E-06 54.5 21.1 221 391-644 101-328 (337)
62 3vl1_A 26S proteasome regulato 97.0 0.089 3E-06 55.4 23.3 229 394-657 104-363 (420)
63 1k8k_C P40, ARP2/3 complex 41 97.0 0.094 3.2E-06 53.9 23.0 202 391-619 56-284 (372)
64 1gxr_A ESG1, transducin-like e 97.0 0.058 2E-06 54.4 21.0 231 390-658 54-295 (337)
65 4aez_A CDC20, WD repeat-contai 97.0 0.038 1.3E-06 58.6 20.3 231 391-658 138-379 (401)
66 3v7d_B Cell division control p 97.0 0.18 6.1E-06 54.1 25.9 174 444-643 278-453 (464)
67 3fvz_A Peptidyl-glycine alpha- 97.0 0.43 1.5E-05 49.1 31.7 261 377-658 14-321 (329)
68 2iwa_A Glutamine cyclotransfer 96.9 0.094 3.2E-06 53.4 21.2 186 439-644 24-228 (266)
69 1r5m_A SIR4-interacting protei 96.9 0.094 3.2E-06 54.7 22.0 231 390-658 111-360 (425)
70 3fm0_A Protein CIAO1; WDR39,SG 96.9 0.076 2.6E-06 55.2 21.0 193 391-608 20-222 (345)
71 3nok_A Glutaminyl cyclase; bet 96.9 0.069 2.3E-06 54.3 19.6 182 439-644 58-257 (268)
72 3bws_A Protein LP49; two-domai 96.9 0.11 3.6E-06 55.2 22.2 198 392-615 127-338 (433)
73 2pbi_B Guanine nucleotide-bind 96.8 0.12 3.9E-06 54.1 21.8 233 391-657 68-313 (354)
74 2hes_X YDR267CP; beta-propelle 96.8 0.053 1.8E-06 56.0 18.9 236 391-657 62-326 (330)
75 1vyh_C Platelet-activating fac 96.8 0.072 2.5E-06 56.9 20.0 151 392-568 113-269 (410)
76 1r5m_A SIR4-interacting protei 96.8 0.066 2.3E-06 55.9 19.4 192 392-613 154-363 (425)
77 3jrp_A Fusion protein of prote 96.7 0.041 1.4E-06 56.7 17.2 188 445-658 22-239 (379)
78 3odt_A Protein DOA1; ubiquitin 96.7 0.16 5.6E-06 50.5 21.3 233 391-663 63-301 (313)
79 3nok_A Glutaminyl cyclase; bet 96.7 0.042 1.4E-06 55.9 16.3 148 398-569 64-215 (268)
80 3zwl_B Eukaryotic translation 96.7 0.093 3.2E-06 53.6 19.2 238 392-658 79-345 (369)
81 2hqs_A Protein TOLB; TOLB, PAL 96.5 0.21 7.3E-06 53.5 21.4 243 398-665 143-394 (415)
82 3hfq_A Uncharacterized protein 96.5 0.48 1.6E-05 48.5 23.3 186 414-617 18-226 (347)
83 4g56_B MGC81050 protein; prote 96.4 0.077 2.6E-06 55.6 17.2 229 392-657 99-341 (357)
84 2hes_X YDR267CP; beta-propelle 96.4 0.39 1.3E-05 49.3 22.5 232 401-663 26-285 (330)
85 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.39 1.3E-05 51.6 23.2 247 391-662 106-397 (450)
86 1vyh_C Platelet-activating fac 96.4 0.11 3.7E-06 55.5 18.5 218 392-644 155-402 (410)
87 3vl1_A 26S proteasome regulato 96.4 0.11 3.7E-06 54.7 18.3 228 393-658 62-321 (420)
88 4aez_A CDC20, WD repeat-contai 96.4 0.47 1.6E-05 50.0 23.1 180 414-615 113-297 (401)
89 3fm0_A Protein CIAO1; WDR39,SG 96.4 0.11 3.8E-06 53.9 17.7 180 445-644 27-216 (345)
90 1jmx_B Amine dehydrogenase; ox 96.4 0.17 5.9E-06 51.4 18.9 156 396-569 8-180 (349)
91 2ojh_A Uncharacterized protein 96.3 0.072 2.5E-06 52.3 15.5 207 390-618 44-265 (297)
92 4aow_A Guanine nucleotide-bind 96.3 0.59 2E-05 47.1 22.6 230 392-657 91-335 (340)
93 3k26_A Polycomb protein EED; W 96.3 0.22 7.4E-06 50.8 19.3 104 399-519 85-194 (366)
94 2pbi_B Guanine nucleotide-bind 96.3 0.3 1E-05 50.8 20.5 223 391-644 110-348 (354)
95 2hqs_A Protein TOLB; TOLB, PAL 96.2 0.16 5.6E-06 54.4 18.8 207 391-619 182-395 (415)
96 3scy_A Hypothetical bacterial 96.2 1.1 3.7E-05 46.2 24.6 115 398-518 12-130 (361)
97 2aq5_A Coronin-1A; WD40 repeat 96.2 0.42 1.4E-05 50.2 21.8 199 393-612 40-255 (402)
98 2bkl_A Prolyl endopeptidase; m 96.2 0.32 1.1E-05 55.8 22.2 219 390-617 123-357 (695)
99 2z3z_A Dipeptidyl aminopeptida 96.2 0.4 1.4E-05 54.6 23.0 188 460-658 234-434 (706)
100 1pgu_A Actin interacting prote 96.2 0.37 1.3E-05 53.2 21.9 236 390-658 67-327 (615)
101 1erj_A Transcriptional repress 96.2 0.31 1.1E-05 51.4 20.3 223 392-644 128-380 (393)
102 1pjx_A Dfpase, DIISOPROPYLFLUO 96.2 0.63 2.2E-05 46.6 21.7 240 391-658 21-298 (314)
103 3c5m_A Oligogalacturonate lyas 96.1 0.49 1.7E-05 48.9 21.5 245 393-658 41-328 (396)
104 2xdw_A Prolyl endopeptidase; a 96.1 0.81 2.8E-05 52.5 25.2 219 391-617 128-375 (710)
105 3hfq_A Uncharacterized protein 96.1 0.77 2.6E-05 46.9 22.7 245 390-664 42-325 (347)
106 2ojh_A Uncharacterized protein 96.1 0.6 2.1E-05 45.5 21.0 227 412-661 20-261 (297)
107 1sq9_A Antiviral protein SKI8; 96.1 0.3 1E-05 50.7 19.7 200 392-614 67-325 (397)
108 3u4y_A Uncharacterized protein 96.1 0.26 8.9E-06 49.9 18.6 226 398-658 9-251 (331)
109 3ei3_B DNA damage-binding prot 96.1 0.21 7.3E-06 51.9 18.2 192 391-612 77-283 (383)
110 2aq5_A Coronin-1A; WD40 repeat 96.1 0.12 4.2E-06 54.4 16.4 197 392-613 86-301 (402)
111 2z3z_A Dipeptidyl aminopeptida 96.0 1.1 3.6E-05 51.1 25.4 246 392-658 86-390 (706)
112 4gqb_B Methylosome protein 50; 96.0 0.28 9.5E-06 51.2 18.7 219 393-644 88-322 (344)
113 3v9f_A Two-component system se 96.0 0.35 1.2E-05 56.4 21.2 215 393-643 412-647 (781)
114 4a11_B DNA excision repair pro 96.0 0.14 4.9E-06 53.0 16.3 152 390-565 46-219 (408)
115 3odt_A Protein DOA1; ubiquitin 96.0 0.6 2.1E-05 46.3 20.4 187 397-613 27-216 (313)
116 1yfq_A Cell cycle arrest prote 96.0 0.53 1.8E-05 47.6 20.3 223 392-644 61-314 (342)
117 1rwi_B Serine/threonine-protei 95.9 0.41 1.4E-05 46.9 18.7 190 391-611 70-264 (270)
118 3dwl_C Actin-related protein 2 95.9 0.11 3.8E-06 53.8 15.0 202 391-619 59-289 (377)
119 1q7f_A NHL, brain tumor CG1071 95.9 1.5 5.3E-05 43.3 25.4 192 392-610 81-279 (286)
120 2ecf_A Dipeptidyl peptidase IV 95.9 0.2 7E-06 57.4 18.4 213 390-617 39-327 (741)
121 1pgu_A Actin interacting prote 95.8 0.26 8.8E-06 54.5 18.5 235 389-658 20-282 (615)
122 3mkq_A Coatomer beta'-subunit; 95.8 0.24 8.3E-06 57.2 18.9 195 391-615 59-263 (814)
123 2dg1_A DRP35, lactonase; beta 95.8 1.6 5.5E-05 44.2 23.2 207 391-617 48-269 (333)
124 4gqb_B Methylosome protein 50; 95.8 0.3 1E-05 50.9 17.9 189 392-611 132-331 (344)
125 1yfq_A Cell cycle arrest prote 95.8 0.52 1.8E-05 47.6 19.2 192 391-611 15-225 (342)
126 4aow_A Guanine nucleotide-bind 95.8 0.66 2.2E-05 46.7 19.9 195 392-613 43-248 (340)
127 4gga_A P55CDC, cell division c 95.7 0.26 8.8E-06 52.5 17.3 231 391-657 151-393 (420)
128 1ri6_A Putative isomerase YBHE 95.7 1 3.6E-05 45.2 21.1 217 391-631 87-330 (343)
129 1erj_A Transcriptional repress 95.7 0.66 2.3E-05 48.8 20.2 192 391-612 68-288 (393)
130 4g56_B MGC81050 protein; prote 95.7 0.16 5.4E-06 53.2 15.1 190 392-611 144-343 (357)
131 1nir_A Nitrite reductase; hemo 95.7 0.61 2.1E-05 52.1 20.7 239 395-668 145-417 (543)
132 3c5m_A Oligogalacturonate lyas 95.7 0.61 2.1E-05 48.2 19.5 152 460-618 167-336 (396)
133 2pm9_A Protein WEB1, protein t 95.6 0.3 1E-05 51.0 17.2 241 392-658 17-293 (416)
134 1sq9_A Antiviral protein SKI8; 95.6 0.46 1.6E-05 49.3 18.5 228 400-658 27-321 (397)
135 4a2l_A BT_4663, two-component 95.6 0.68 2.3E-05 54.0 21.7 212 393-642 411-649 (795)
136 3dm0_A Maltose-binding peripla 95.6 1.2 4E-05 50.9 23.3 193 392-615 435-636 (694)
137 4gga_A P55CDC, cell division c 95.6 1.6 5.5E-05 46.2 22.9 181 414-616 125-315 (420)
138 3i2n_A WD repeat-containing pr 95.6 0.41 1.4E-05 48.5 17.5 195 391-611 22-243 (357)
139 3jro_A Fusion protein of prote 95.5 0.19 6.4E-06 58.5 16.5 188 445-658 20-237 (753)
140 3mmy_A MRNA export factor; mRN 95.5 0.92 3.2E-05 45.9 20.0 193 390-612 42-248 (368)
141 2xbg_A YCF48-like protein; pho 95.5 2.7 9.1E-05 43.3 26.3 249 378-665 26-286 (327)
142 3sfz_A APAF-1, apoptotic pepti 95.4 0.5 1.7E-05 57.7 20.3 222 391-644 619-862 (1249)
143 3u4y_A Uncharacterized protein 95.3 1 3.4E-05 45.5 19.4 198 392-617 44-258 (331)
144 3iz6_a 40S ribosomal protein R 95.3 0.78 2.7E-05 48.0 19.1 234 391-658 70-328 (380)
145 2p4o_A Hypothetical protein; p 95.3 2.9 0.0001 42.3 24.7 222 390-641 34-277 (306)
146 2vdu_B TRNA (guanine-N(7)-)-me 95.2 1.6 5.3E-05 46.7 21.5 204 391-616 153-398 (450)
147 3azo_A Aminopeptidase; POP fam 95.2 0.99 3.4E-05 50.9 20.8 250 397-663 88-374 (662)
148 2pm9_A Protein WEB1, protein t 95.2 0.64 2.2E-05 48.5 17.9 235 391-658 71-336 (416)
149 1pby_B Quinohemoprotein amine 95.1 0.51 1.7E-05 47.4 16.1 236 390-658 36-309 (337)
150 3iuj_A Prolyl endopeptidase; h 95.1 2.5 8.5E-05 48.5 23.8 217 390-617 131-365 (693)
151 3gre_A Serine/threonine-protei 95.0 0.87 3E-05 48.1 18.6 146 492-658 181-358 (437)
152 3no2_A Uncharacterized protein 95.0 3.3 0.00011 41.6 24.2 207 398-640 4-230 (276)
153 3v9f_A Two-component system se 95.0 1.6 5.4E-05 50.7 22.3 215 392-640 367-600 (781)
154 2ynn_A Coatomer subunit beta'; 95.0 2.4 8.3E-05 42.6 21.2 193 392-615 60-263 (304)
155 3mmy_A MRNA export factor; mRN 95.0 1.3 4.3E-05 44.9 19.0 220 392-643 91-336 (368)
156 3i2n_A WD repeat-containing pr 95.0 0.3 1E-05 49.6 14.2 184 399-611 80-291 (357)
157 1yr2_A Prolyl oligopeptidase; 94.8 2.7 9.2E-05 48.5 23.4 217 391-617 166-401 (741)
158 4ggc_A P55CDC, cell division c 94.7 3.2 0.00011 41.0 20.9 234 391-657 71-313 (318)
159 3lrv_A PRE-mRNA-splicing facto 94.7 3.5 0.00012 42.1 21.7 186 398-613 47-246 (343)
160 2bkl_A Prolyl endopeptidase; m 94.7 2.4 8.4E-05 48.4 22.4 251 398-658 79-350 (695)
161 2xbg_A YCF48-like protein; pho 94.7 3.9 0.00013 42.1 22.0 216 392-640 84-310 (327)
162 3vu4_A KMHSV2; beta-propeller 94.7 4.7 0.00016 41.6 24.0 64 539-612 206-272 (355)
163 2ecf_A Dipeptidyl peptidase IV 94.6 1.1 3.7E-05 51.2 19.1 206 393-618 114-375 (741)
164 3g4e_A Regucalcin; six bladed 94.6 2.3 7.9E-05 42.7 19.6 215 398-643 24-263 (297)
165 3sfz_A APAF-1, apoptotic pepti 94.6 0.13 4.3E-06 63.1 11.7 227 391-656 1007-1246(1249)
166 3frx_A Guanine nucleotide-bind 94.6 4.3 0.00015 41.0 21.8 219 392-644 70-308 (319)
167 1nir_A Nitrite reductase; hemo 94.6 0.76 2.6E-05 51.3 17.2 240 392-658 183-457 (543)
168 3gre_A Serine/threonine-protei 94.6 4.7 0.00016 42.4 22.8 149 445-613 181-361 (437)
169 4e54_B DNA damage-binding prot 94.6 0.26 8.8E-06 52.8 12.9 194 391-612 123-328 (435)
170 3pe7_A Oligogalacturonate lyas 94.5 0.88 3E-05 47.1 16.6 218 394-620 42-282 (388)
171 1pby_B Quinohemoprotein amine 94.4 0.97 3.3E-05 45.3 16.3 149 401-569 3-168 (337)
172 3ei3_B DNA damage-binding prot 94.4 0.76 2.6E-05 47.6 15.9 182 447-658 87-281 (383)
173 2xdw_A Prolyl endopeptidase; a 94.4 3.2 0.00011 47.5 22.5 250 398-657 83-366 (710)
174 1kb0_A Quinohemoprotein alcoho 94.4 8.6 0.0003 44.0 26.0 114 398-523 77-207 (677)
175 2fp8_A Strictosidine synthase; 94.4 4.3 0.00015 41.2 21.2 240 391-658 22-312 (322)
176 2pm7_B Protein transport prote 94.4 1.1 3.6E-05 45.1 16.4 188 445-658 20-237 (297)
177 4a2l_A BT_4663, two-component 94.3 10 0.00035 43.9 27.9 195 391-618 91-298 (795)
178 3pe7_A Oligogalacturonate lyas 94.1 1.9 6.6E-05 44.4 18.3 217 394-619 87-337 (388)
179 2p4o_A Hypothetical protein; p 94.1 5.6 0.00019 40.1 22.6 208 426-663 22-246 (306)
180 3e5z_A Putative gluconolactona 94.1 3.8 0.00013 40.7 19.8 196 392-617 32-252 (296)
181 3b7f_A Glycosyl hydrolase, BNR 94.1 6.4 0.00022 41.4 22.5 204 416-640 33-297 (394)
182 2ad6_A Methanol dehydrogenase 94.1 7.2 0.00024 43.7 24.0 115 398-523 62-193 (571)
183 3iz6_a 40S ribosomal protein R 94.1 0.79 2.7E-05 48.0 15.2 185 446-658 170-374 (380)
184 4e54_B DNA damage-binding prot 94.0 0.29 9.8E-06 52.5 11.7 146 445-612 131-283 (435)
185 3ott_A Two-component system se 93.9 4.2 0.00014 46.9 22.2 213 392-643 377-617 (758)
186 1qks_A Cytochrome CD1 nitrite 93.8 4.2 0.00014 45.6 21.4 239 397-669 165-437 (567)
187 2xzm_R RACK1; ribosome, transl 93.8 4 0.00014 41.7 19.8 69 392-472 81-151 (343)
188 3no2_A Uncharacterized protein 93.7 6.2 0.00021 39.5 22.8 200 390-616 39-259 (276)
189 2mad_H Methylamine dehydrogena 93.7 7.9 0.00027 40.7 26.9 115 398-521 32-160 (373)
190 3scy_A Hypothetical bacterial 93.6 7.1 0.00024 39.8 24.6 250 391-665 53-346 (361)
191 2dg1_A DRP35, lactonase; beta 93.5 2.7 9.1E-05 42.5 17.7 152 445-611 55-213 (333)
192 2ad6_A Methanol dehydrogenase 93.5 5.7 0.0002 44.5 21.9 121 439-570 56-193 (571)
193 4h5i_A Guanine nucleotide-exch 93.5 5.6 0.00019 41.3 20.6 197 392-610 138-342 (365)
194 2gop_A Trilobed protease; beta 93.5 5.2 0.00018 40.4 20.0 236 391-656 62-330 (347)
195 3dm0_A Maltose-binding peripla 93.4 4.2 0.00014 46.2 21.0 189 398-614 394-595 (694)
196 1kb0_A Quinohemoprotein alcoho 93.3 7.1 0.00024 44.7 22.7 120 439-570 71-207 (677)
197 4ggc_A P55CDC, cell division c 93.3 6.8 0.00023 38.5 22.4 152 391-566 29-183 (318)
198 3hrp_A Uncharacterized protein 93.3 10 0.00034 40.4 25.5 224 390-642 133-399 (409)
199 2xyi_A Probable histone-bindin 93.2 0.78 2.7E-05 48.9 13.5 194 391-611 132-353 (430)
200 3azo_A Aminopeptidase; POP fam 93.0 2 6.9E-05 48.3 17.3 213 391-617 133-375 (662)
201 3k26_A Polycomb protein EED; W 93.0 7.2 0.00025 39.1 19.9 70 392-471 120-193 (366)
202 3bg1_A Protein SEC13 homolog; 92.9 1 3.6E-05 45.7 13.4 111 445-570 24-143 (316)
203 2p5d_A UPF0310 protein mjecl36 92.8 0.079 2.7E-06 48.9 4.2 95 22-118 8-113 (147)
204 3f3f_A Nucleoporin SEH1; struc 92.8 4.7 0.00016 39.8 17.9 187 445-657 22-247 (351)
205 1qhu_A Protein (hemopexin); be 92.7 8 0.00028 42.2 20.7 173 398-611 158-385 (460)
206 3o4h_A Acylamino-acid-releasin 92.7 2.7 9.2E-05 46.6 17.5 228 400-659 76-315 (582)
207 2gop_A Trilobed protease; beta 92.7 2.5 8.6E-05 42.8 16.0 185 412-618 41-258 (347)
208 2xyi_A Probable histone-bindin 92.7 2 6.9E-05 45.7 15.8 102 495-611 196-309 (430)
209 1kv9_A Type II quinohemoprotei 92.7 17 0.00058 41.4 25.7 113 398-522 66-194 (668)
210 1nr0_A Actin interacting prote 92.3 17 0.00057 40.5 23.7 199 391-616 63-275 (611)
211 1npe_A Nidogen, entactin; glyc 92.3 9.1 0.00031 37.4 23.1 191 438-658 38-237 (267)
212 3lrv_A PRE-mRNA-splicing facto 92.2 11 0.00037 38.2 20.9 151 445-616 138-299 (343)
213 2oiz_A Aromatic amine dehydrog 92.2 9.6 0.00033 39.6 20.1 73 586-670 265-347 (361)
214 1yiq_A Quinohemoprotein alcoho 92.1 20 0.00068 41.0 26.0 114 398-523 70-200 (689)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 92.1 4.6 0.00016 40.0 16.9 195 391-612 74-300 (314)
216 1qks_A Cytochrome CD1 nitrite 92.1 5.4 0.00018 44.8 18.9 241 391-658 200-476 (567)
217 1nr0_A Actin interacting prote 92.0 14 0.00049 41.1 22.5 197 393-617 153-361 (611)
218 2hd9_A UPF0310 protein PH1033; 91.9 0.42 1.4E-05 43.9 7.8 112 30-144 13-142 (145)
219 3g4e_A Regucalcin; six bladed 91.7 7.5 0.00026 38.8 18.0 187 445-661 24-232 (297)
220 2xzm_R RACK1; ribosome, transl 91.5 13 0.00045 37.6 22.0 184 398-610 38-243 (343)
221 4a11_B DNA excision repair pro 91.4 2.2 7.4E-05 43.9 13.9 105 492-612 111-219 (408)
222 1w6s_A Methanol dehydrogenase 91.2 14 0.00047 41.7 21.2 115 398-523 62-199 (599)
223 1yr2_A Prolyl oligopeptidase; 91.0 20 0.00067 41.1 22.7 249 398-658 118-394 (741)
224 3b7f_A Glycosyl hydrolase, BNR 90.9 17 0.00059 37.9 23.3 252 390-669 57-384 (394)
225 1yiq_A Quinohemoprotein alcoho 90.9 26 0.00089 40.0 24.9 119 440-570 65-200 (689)
226 3c75_H MADH, methylamine dehyd 90.6 4.5 0.00016 43.7 15.7 256 398-670 84-413 (426)
227 2ymu_A WD-40 repeat protein; u 90.5 9.2 0.00032 41.6 18.6 216 392-644 349-571 (577)
228 1jmx_B Amine dehydrogenase; ox 90.3 5.7 0.0002 39.7 15.6 118 391-521 46-179 (349)
229 2fp8_A Strictosidine synthase; 90.3 12 0.00042 37.7 18.2 198 391-612 83-314 (322)
230 1kv9_A Type II quinohemoprotei 90.3 29 0.00099 39.5 24.7 120 439-570 60-195 (668)
231 4h5i_A Guanine nucleotide-exch 90.0 19 0.00066 37.1 22.4 149 492-658 144-299 (365)
232 3v65_B Low-density lipoprotein 89.8 22 0.00074 37.4 24.9 200 414-640 96-305 (386)
233 1k32_A Tricorn protease; prote 89.8 10 0.00035 45.4 19.6 162 390-571 298-468 (1045)
234 3ott_A Two-component system se 89.7 25 0.00084 40.3 22.1 186 393-617 68-266 (758)
235 1w6s_A Methanol dehydrogenase 89.6 27 0.00091 39.3 21.7 121 439-570 56-199 (599)
236 3iuj_A Prolyl endopeptidase; h 89.0 31 0.0011 39.2 22.1 205 445-661 139-361 (693)
237 1npe_A Nidogen, entactin; glyc 88.8 18 0.00062 35.2 26.1 198 390-615 38-242 (267)
238 3dw8_B Serine/threonine-protei 88.5 20 0.00068 37.2 18.7 32 389-425 30-61 (447)
239 3frx_A Guanine nucleotide-bind 88.2 10 0.00034 38.2 15.6 144 445-613 76-229 (319)
240 1flg_A Protein (quinoprotein e 87.5 40 0.0014 37.6 21.6 118 439-569 62-200 (582)
241 3m0c_C LDL receptor, low-densi 87.1 51 0.0018 38.4 23.0 201 415-641 405-620 (791)
242 1k32_A Tricorn protease; prote 87.0 9.7 0.00033 45.7 16.8 199 394-618 251-468 (1045)
243 1ijq_A LDL receptor, low-densi 86.9 28 0.00097 35.2 26.4 199 414-640 10-225 (316)
244 3hxj_A Pyrrolo-quinoline quino 86.7 3.3 0.00011 41.5 10.8 181 392-617 24-211 (330)
245 3o4h_A Acylamino-acid-releasin 86.7 6.9 0.00023 43.2 14.3 203 392-617 26-233 (582)
246 2ymu_A WD-40 repeat protein; u 86.7 31 0.0011 37.3 19.5 224 392-657 308-537 (577)
247 3hxj_A Pyrrolo-quinoline quino 86.3 15 0.00052 36.4 15.6 197 398-642 107-313 (330)
248 3e5z_A Putative gluconolactona 86.2 27 0.00092 34.3 17.7 191 391-613 72-288 (296)
249 1flg_A Protein (quinoprotein e 85.9 48 0.0017 37.0 23.1 114 397-522 67-200 (582)
250 3fvz_A Peptidyl-glycine alpha- 85.9 31 0.0011 34.7 29.4 183 461-658 69-276 (329)
251 1qhu_A Protein (hemopexin); be 85.6 45 0.0015 36.3 23.3 139 390-565 58-216 (460)
252 2ghs_A AGR_C_1268P; regucalcin 85.2 34 0.0012 34.5 20.4 143 445-610 60-209 (326)
253 3v64_C Agrin; beta propeller, 85.0 38 0.0013 34.9 26.0 199 414-641 53-263 (349)
254 3dr2_A Exported gluconolactona 85.0 23 0.00078 35.3 16.2 195 398-617 56-273 (305)
255 1itv_A MMP9; adaptive molecula 84.8 19 0.00064 34.4 14.4 144 440-613 11-176 (195)
256 1xfd_A DIP, dipeptidyl aminope 84.2 17 0.00059 40.9 16.4 80 391-476 64-149 (723)
257 1pex_A Collagenase-3, MMP-13; 84.2 31 0.0011 33.2 17.9 144 440-615 28-196 (207)
258 1xfd_A DIP, dipeptidyl aminope 83.9 5.5 0.00019 45.0 12.1 103 415-523 38-149 (723)
259 2xe4_A Oligopeptidase B; hydro 83.7 56 0.0019 37.5 20.7 206 391-609 177-398 (751)
260 3p5b_L Low density lipoprotein 81.2 58 0.002 34.3 21.8 200 414-640 92-307 (400)
261 2ghs_A AGR_C_1268P; regucalcin 81.1 49 0.0017 33.3 26.7 220 393-643 54-293 (326)
262 2oaj_A Protein SNI1; WD40 repe 81.1 93 0.0032 36.6 26.8 195 391-616 21-247 (902)
263 1n7d_A LDL receptor, low-densi 80.6 17 0.00059 41.7 14.5 210 414-657 386-612 (699)
264 2oiz_A Aromatic amine dehydrog 79.3 60 0.0021 33.3 20.4 82 539-630 265-354 (361)
265 2ece_A 462AA long hypothetical 79.2 76 0.0026 34.4 19.8 212 398-617 25-295 (462)
266 1sqj_A OXG-RCBH, oligoxylogluc 78.9 1E+02 0.0035 35.7 31.5 238 416-665 39-340 (789)
267 1pex_A Collagenase-3, MMP-13; 77.9 50 0.0017 31.7 17.3 146 391-569 27-197 (207)
268 3dr2_A Exported gluconolactona 77.9 36 0.0012 33.8 14.5 163 391-570 89-273 (305)
269 3oyo_A Hemopexin fold protein 76.0 18 0.0006 35.4 11.0 138 445-610 13-197 (225)
270 3sjl_D Methylamine dehydrogena 76.0 82 0.0028 33.3 17.1 115 398-520 44-172 (386)
271 3oyo_A Hemopexin fold protein 75.9 36 0.0012 33.1 13.3 99 444-563 69-197 (225)
272 3c7x_A Matrix metalloproteinas 75.5 56 0.0019 31.0 14.7 144 440-613 10-177 (196)
273 3dw8_B Serine/threonine-protei 75.0 61 0.0021 33.3 15.9 158 391-570 181-379 (447)
274 1ijq_A LDL receptor, low-densi 74.2 76 0.0026 31.9 24.1 193 392-613 34-240 (316)
275 1su3_A Interstitial collagenas 73.5 26 0.0009 38.0 12.6 147 440-616 267-437 (450)
276 3hrp_A Uncharacterized protein 73.3 95 0.0032 32.6 21.4 146 445-612 141-299 (409)
277 2ece_A 462AA long hypothetical 72.7 1.1E+02 0.0038 33.1 20.3 167 398-571 95-296 (462)
278 2mad_H Methylamine dehydrogena 71.8 98 0.0033 32.1 24.5 86 539-632 278-370 (373)
279 3v65_B Low-density lipoprotein 69.9 1.1E+02 0.0037 31.8 23.2 184 398-611 127-318 (386)
280 1z68_A Fibroblast activation p 69.5 33 0.0011 38.6 13.0 76 391-476 63-145 (719)
281 2oit_A Nucleoporin 214KDA; NH2 69.2 1.2E+02 0.0041 32.0 18.3 108 493-612 162-279 (434)
282 2cn3_A Xyloglucanase, beta-1,4 68.8 1.7E+02 0.0057 33.5 31.9 259 389-664 24-343 (737)
283 3c75_H MADH, methylamine dehyd 67.7 51 0.0017 35.4 13.3 115 445-567 84-212 (426)
284 1itv_A MMP9; adaptive molecula 67.2 86 0.0029 29.6 14.3 139 487-658 11-173 (195)
285 3m0c_C LDL receptor, low-densi 66.9 1.9E+02 0.0065 33.5 23.6 184 398-611 435-632 (791)
286 2hz6_A Endoplasmic reticulum t 66.7 2.6 8.9E-05 44.2 2.7 143 442-616 6-156 (369)
287 3lp9_A LS-24; SEED albumin, pl 63.6 21 0.00072 34.9 8.5 142 396-565 13-202 (227)
288 2p9w_A MAL S 1 allergenic prot 62.7 1.5E+02 0.005 30.7 19.3 213 414-643 35-305 (334)
289 3tc9_A Hypothetical hydrolase; 62.1 1E+02 0.0034 32.7 14.4 145 445-610 149-300 (430)
290 1mda_H Methylamine dehydrogena 62.0 1.1E+02 0.0038 31.9 14.4 78 586-671 275-357 (368)
291 2hz6_A Endoplasmic reticulum t 61.0 2.3 8E-05 44.6 1.0 106 489-616 6-118 (369)
292 3v64_C Agrin; beta propeller, 60.8 1.5E+02 0.0051 30.2 24.2 183 398-611 84-275 (349)
293 1n7d_A LDL receptor, low-densi 60.6 78 0.0027 36.1 13.9 149 444-616 463-619 (699)
294 2qe8_A Uncharacterized protein 59.2 1.5E+02 0.0052 29.7 21.1 128 390-523 19-161 (343)
295 1su3_A Interstitial collagenas 59.0 1.1E+02 0.0037 33.0 13.9 147 391-570 266-438 (450)
296 1fwx_A Nitrous oxide reductase 58.1 1.2E+02 0.0042 33.9 14.4 255 398-670 101-443 (595)
297 1fs1_A SKP2 F-BOX, cyclin A/CD 57.2 3 0.0001 30.6 0.8 29 314-347 20-48 (53)
298 2xe4_A Oligopeptidase B; hydro 55.6 2.5E+02 0.0086 32.0 17.2 200 445-657 185-398 (751)
299 3ju4_A Endo-N-acetylneuraminid 53.3 2.4E+02 0.0081 30.2 17.8 173 423-595 269-481 (670)
300 4a0p_A LRP6, LRP-6, low-densit 53.2 2.8E+02 0.0096 31.0 27.0 198 414-640 15-224 (628)
301 1hxn_A Hemopexin, HPX; heme, b 52.2 1.7E+02 0.0058 28.2 14.1 142 390-563 20-196 (219)
302 3ju4_A Endo-N-acetylneuraminid 51.7 2.5E+02 0.0085 30.0 18.1 126 469-594 268-405 (670)
303 3ba0_A Macrophage metalloelast 51.1 2.3E+02 0.0079 29.4 17.0 147 440-616 185-355 (365)
304 1jof_A Carboxy-CIS,CIS-muconat 50.2 2.1E+02 0.0072 28.7 21.4 104 508-616 167-297 (365)
305 1z68_A Fibroblast activation p 49.9 2.5E+02 0.0086 31.1 15.8 193 415-614 225-446 (719)
306 3sov_A LRP-6, low-density lipo 49.3 2.2E+02 0.0075 28.6 19.6 169 445-640 46-225 (318)
307 1hxn_A Hemopexin, HPX; heme, b 46.2 2.1E+02 0.0071 27.5 13.7 135 444-610 27-196 (219)
308 4hw6_A Hypothetical protein, I 45.7 2E+02 0.0069 30.4 13.3 141 446-610 153-303 (433)
309 3p5b_L Low density lipoprotein 45.6 2.8E+02 0.0096 28.8 22.2 185 398-612 123-321 (400)
310 4hvt_A Ritya.17583.B, post-pro 45.0 4E+02 0.014 30.4 21.7 212 395-615 137-385 (711)
311 1sqj_A OXG-RCBH, oligoxylogluc 43.4 4.3E+02 0.015 30.3 29.3 228 424-669 4-280 (789)
312 3ba0_A Macrophage metalloelast 42.8 3.1E+02 0.011 28.5 14.3 120 382-522 220-355 (365)
313 1gen_A Gelatinase A; hydrolase 42.7 2.3E+02 0.008 27.1 14.2 133 487-642 35-193 (218)
314 3tc9_A Hypothetical hydrolase; 41.5 1.3E+02 0.0043 31.9 10.9 107 492-617 149-263 (430)
315 3lp9_A LS-24; SEED albumin, pl 40.0 98 0.0033 30.0 8.9 102 396-518 70-202 (227)
316 2oaj_A Protein SNI1; WD40 repe 39.5 5.1E+02 0.018 30.1 21.2 182 445-658 28-241 (902)
317 2ar1_A Hypothetical protein; s 38.9 36 0.0012 31.7 5.1 40 47-88 54-95 (172)
318 2qe8_A Uncharacterized protein 37.3 3.2E+02 0.011 27.2 16.7 85 390-476 69-161 (343)
319 2cn3_A Xyloglucanase, beta-1,4 35.9 5.3E+02 0.018 29.2 28.1 232 423-669 10-294 (737)
320 3qhy_B Beta-lactamase inhibito 35.7 2.6E+02 0.0089 27.6 11.6 215 387-644 31-247 (282)
321 3a0f_A Xyloglucanase; beta-pro 33.8 5.8E+02 0.02 29.0 27.4 196 416-622 45-295 (763)
322 1gen_A Gelatinase A; hydrolase 32.3 3.4E+02 0.012 25.9 13.0 104 395-519 84-204 (218)
323 3ei3_A DNA damage-binding prot 31.3 7.7E+02 0.026 29.8 17.4 115 507-633 863-979 (1158)
324 1fwx_A Nitrous oxide reductase 31.0 5.7E+02 0.019 28.5 14.1 158 445-612 101-309 (595)
325 3c7x_A Matrix metalloproteinas 29.1 3.6E+02 0.012 25.2 13.0 115 382-519 46-177 (196)
326 3vu4_A KMHSV2; beta-propeller 28.3 4.5E+02 0.015 26.1 22.6 63 492-565 206-272 (355)
327 3sov_A LRP-6, low-density lipo 28.0 4.6E+02 0.016 26.1 21.4 184 398-613 46-240 (318)
328 4a5s_A Dipeptidyl peptidase 4 25.5 7.4E+02 0.025 27.6 20.3 75 393-476 67-147 (740)
329 4hvt_A Ritya.17583.B, post-pro 24.9 6E+02 0.02 28.9 13.4 149 460-619 268-437 (711)
330 2eve_A Hypothetical protein ps 23.7 53 0.0018 30.2 3.3 40 47-88 36-77 (157)
331 4a0p_A LRP6, LRP-6, low-densit 23.4 7.9E+02 0.027 27.2 22.5 178 398-609 48-235 (628)
332 1ck7_A Protein (gelatinase A); 22.3 1.9E+02 0.0064 32.7 8.2 143 439-612 447-616 (631)
333 4hw6_A Hypothetical protein, I 21.7 7E+02 0.024 26.0 23.7 150 391-563 142-303 (433)
334 2p9w_A MAL S 1 allergenic prot 21.2 6.8E+02 0.023 25.6 18.4 186 461-663 35-268 (334)
335 4a5s_A Dipeptidyl peptidase 4 21.1 8.8E+02 0.03 26.9 15.0 80 392-478 21-109 (740)
336 2j04_A TAU60, YPL007P, hypothe 20.6 9E+02 0.031 26.8 20.0 172 445-642 96-287 (588)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.9e-46 Score=393.05 Aligned_cols=293 Identities=31% Similarity=0.546 Sum_probs=265.6
Q ss_pred hcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecC----CCCCcc
Q 005735 385 KLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGG----DGNSWH 460 (680)
Q Consensus 385 ~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~----~~~~~~ 460 (680)
-+..+..+..+..++.||++||. ....++++++||+.+++|..++++|.+|.+|++++++++|||+||. .+....
T Consensus 11 ~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 89 (308)
T 1zgk_A 11 SGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDS 89 (308)
T ss_dssp ----------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEEC
T ss_pred CCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeec
Confidence 34556667777779999999998 4567789999999999999999999999999999999999999998 555667
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECC
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 540 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g 540 (680)
+++++||+.+++|+.++++|.+|..|++++++++||++||.+....++++++||+.+++|+.++++|.+|..++++.+++
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 169 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR 169 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECC
Confidence 89999999999999999999999999999999999999998777778999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM 620 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~l 620 (680)
+||++||.++...++++++||+.+++|+.++++|.+|..|++++++++||++||.++.....++++||+.+++|+.++++
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 99999999887778999999999999999999999999999999999999999998777788999999999999999999
Q ss_pred CCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC-CCeEecccCCCCCcceeEEEEC
Q 005735 621 KLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 680 (680)
Q Consensus 621 p~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~~ 680 (680)
|.+|..+++++++++|||+||.+.. ..++++++|++. ++|+.++++|.+ |+.|++++|
T Consensus 250 p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~l 308 (308)
T 1zgk_A 250 KHRRSALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTRMTSG-RSGVGVAVT 308 (308)
T ss_dssp SSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSC-CBSCEEEEC
T ss_pred CCCccceEEEEECCEEEEEcCcCCC-cccceEEEEcCCCCEEeecCCCCCC-cccceeEeC
Confidence 9999999999999999999998753 577899999999 999999999997 999999886
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=382.91 Aligned_cols=283 Identities=28% Similarity=0.553 Sum_probs=260.4
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
+..++.||++||.+. ..++++++||+.+++|..+++||.+|..|++++++++|||+||..+....+++++||+.+++|+
T Consensus 12 ~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 12 MNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp ---CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred cCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 344789999999865 4568899999999999999999999999999999999999999987777899999999999999
Q ss_pred ECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCC--C
Q 005735 475 SRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGN--E 552 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~--~ 552 (680)
.++++|.+|..|++++++++||++||.++...++++++||+.+++|+.++++|.+|..++++.++++||++||.+.. .
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred eCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 99999999999999999999999999887777899999999999999999999999999999999999999998765 3
Q ss_pred cCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE
Q 005735 553 YMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV 632 (680)
Q Consensus 553 ~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~ 632 (680)
..+++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|..++.+|.+|..++++.+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 250 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV 250 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE
Confidence 57899999999999999999999999999999999999999998777788999999999999999999999999999999
Q ss_pred CCEEEEEecccCCCcccceEEEEcCC-CCeEecc-cCCCCCcceeEEEEC
Q 005735 633 KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEIN-SRAIGKRCFMSVVTV 680 (680)
Q Consensus 633 ~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~-~~p~~~r~~~sa~~~ 680 (680)
+++|||+||.+.. ..+.++++|++. ++|+.++ .+|.+ |+.|+++++
T Consensus 251 ~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~~-r~~~~~~~~ 298 (302)
T 2xn4_A 251 NGLLYVVGGDDGS-CNLASVEYYNPTTDKWTVVSSCMSTG-RSYAGVTVI 298 (302)
T ss_dssp TTEEEEECCBCSS-SBCCCEEEEETTTTEEEECSSCCSSC-CBSCEEEEE
T ss_pred CCEEEEECCcCCC-cccccEEEEcCCCCeEEECCcccCcc-cccceEEEe
Confidence 9999999998654 467889999999 9999997 78886 889988874
No 3
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-45 Score=380.23 Aligned_cols=282 Identities=30% Similarity=0.582 Sum_probs=264.6
Q ss_pred CCCEEEEEec-CCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc---
Q 005735 397 PSESIYLVGG-CDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE--- 472 (680)
Q Consensus 397 ~~~~Iyv~GG-~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~--- 472 (680)
.++.||++|| .++....+++++||+.+++|..++++|.+|.+|+++.++++|||+||..+....+++++||+.+++
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 4789999999 566677899999999999999999999999999999999999999999877778999999999999
Q ss_pred EEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCC
Q 005735 473 WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNE 552 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~ 552 (680)
|+.++++|.+|..|++++++++||++||..+...++++++||+.+++|+.++++|.+|..++++.++++||++||.++..
T Consensus 93 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN 172 (301)
T ss_dssp CEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred eEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCc
Confidence 99999999999999999999999999998877778999999999999999999999999999999999999999998877
Q ss_pred cCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE
Q 005735 553 YMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV 632 (680)
Q Consensus 553 ~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~ 632 (680)
..+++++||+.+++|+.++++|.+|..|+++.++++||++||.++....+++++||+.+++|..++.+|.+|..++++++
T Consensus 173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 252 (301)
T 2vpj_A 173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE
Confidence 88999999999999999999999999999999999999999998776688999999999999999999999999999999
Q ss_pred CCEEEEEecccCCCcccceEEEEcCC-CCeEecccCCCCCcceeEEEEC
Q 005735 633 KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 680 (680)
Q Consensus 633 ~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~~ 680 (680)
+++||++||.+.. ..+.++++|++. ++|+.++++|.. |+.|++++|
T Consensus 253 ~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~ 299 (301)
T 2vpj_A 253 RGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTSMGTQ-RCDAGVCVL 299 (301)
T ss_dssp TTEEEEECCBCSS-SBEEEEEEEETTTTEEEEEEEEEEE-EESCEEEEE
T ss_pred CCEEEEEcCcCCC-cccccEEEEcCCCCeEEEcCCCCcc-cccceEEEe
Confidence 9999999998754 467899999999 999999999996 999998875
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=7.5e-45 Score=382.01 Aligned_cols=277 Identities=23% Similarity=0.396 Sum_probs=257.8
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~ 477 (680)
.+.||++||.+. .+++++||+.+++|..+++||.+|.+|++++++++|||+||.. ....+++++||+.+++|+.++
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECC
Confidence 578999999765 7889999999999999999999999999999999999999988 667899999999999999999
Q ss_pred CCCCCCcccEEEEECCEEEEEccCC-CCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCc---
Q 005735 478 SLNGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY--- 553 (680)
Q Consensus 478 ~lp~~r~~~a~~v~~gkIyV~GG~~-~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~--- 553 (680)
++|.+|..|++++++++||++||.+ ....++++++||+.+++|+.++++|.+|..++++.++++||++||.+....
T Consensus 87 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 87 GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence 9999999999999999999999987 556789999999999999999999999999999999999999999876654
Q ss_pred -CceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE
Q 005735 554 -MNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV 632 (680)
Q Consensus 554 -~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~ 632 (680)
.+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.....+++++||+.+++|+.++++|.+|..++++++
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 8899999999999999999999999999999999999999987766678899999999999999999999999999999
Q ss_pred CCEEEEEecccCCCcccceEEEEcCC-CCeEecccCCCCCcceeEEEEC
Q 005735 633 KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 680 (680)
Q Consensus 633 ~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~~ 680 (680)
+++|||+||.+.. ..++++++|++. ++|+.++++|.+ |..|+++++
T Consensus 247 ~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~ 293 (306)
T 3ii7_A 247 GSIVYVLAGFQGV-GRLGHILEYNTETDKWVANSKVRAF-PVTSCLICV 293 (306)
T ss_dssp TTEEEEEECBCSS-SBCCEEEEEETTTTEEEEEEEEECC-SCTTCEEEE
T ss_pred CCEEEEEeCcCCC-eeeeeEEEEcCCCCeEEeCCCcccc-cceeEEEEE
Confidence 9999999998754 477899999999 999999999986 888887764
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=359.34 Aligned_cols=271 Identities=18% Similarity=0.339 Sum_probs=241.1
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCC--CCCccceEEEEECCEEEEEecCC------CCCccceEEEEeCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPM--SSARSYASAAMLNGELYIFGGGD------GNSWHNTVESYSPA 469 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~m--p~~R~~~s~v~~~~~IyV~GG~~------~~~~~~~v~vyD~~ 469 (680)
.+.||++|| +++++||+.+++|.. +++ |.+|..|++++++++|||+||.. .....+++++||+.
T Consensus 4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~ 75 (315)
T 4asc_A 4 QDLIFMISE-------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL 75 (315)
T ss_dssp EEEEEEEET-------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred ceEEEEEcC-------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCC
Confidence 457999999 579999999999987 555 45899999999999999999952 23345669999999
Q ss_pred CCcEEECCCCCCCCcccEEEEECCEEEEEccCC---CCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEc
Q 005735 470 NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN---GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATG 546 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~---~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~G 546 (680)
+++|+.++++|.+|..|++++++++||++||.+ +...++++++||+.+++|+.++++|.+|..++++.++++||++|
T Consensus 76 ~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 155 (315)
T 4asc_A 76 DSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIG 155 (315)
T ss_dssp TTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEe
Confidence 999999999999999999999999999999964 35678999999999999999999999999999999999999999
Q ss_pred CC-CCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCcc
Q 005735 547 GY-DGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG 625 (680)
Q Consensus 547 G~-~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~ 625 (680)
|. +....++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+|.
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 98 55577889999999999999999999999999999999999999998877677899999999999999999999999
Q ss_pred ceEEEEECCEEEEEecccCC----C----cccceEEEEcCC-CCeEecccCCCCCcceeEEEE
Q 005735 626 YLGAAVVKEAIYVIGGVKNG----S----EIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVT 679 (680)
Q Consensus 626 ~~s~v~~~~~lyV~GG~~~~----~----~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~ 679 (680)
.|++++++++|||+||.... + ..++++++|++. ++|+.+ +|.. |..|++++
T Consensus 236 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~-r~~~~~~~ 295 (315)
T 4asc_A 236 SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREI-AYAAGATF 295 (315)
T ss_dssp SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCS-SCCSSCEE
T ss_pred ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCC-cCccceEE
Confidence 99999999999999998631 1 356889999999 999999 3443 66666665
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=8.4e-41 Score=353.62 Aligned_cols=273 Identities=19% Similarity=0.351 Sum_probs=240.3
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcC-CCCCCccceEEEEECCEEEEEecCC----C--CCccceEEEEeCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLK-PMSSARSYASAAMLNGELYIFGGGD----G--NSWHNTVESYSPAN 470 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~-~mp~~R~~~s~v~~~~~IyV~GG~~----~--~~~~~~v~vyD~~t 470 (680)
.+.||++||. .++.||+.+++|...+ +.+.+|..|++++.+++|||+||.. + ....+.+++||+.+
T Consensus 15 ~~~i~~~GG~-------~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 87 (318)
T 2woz_A 15 KDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS 87 (318)
T ss_dssp EEEEEEECSS-------EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT
T ss_pred cchhhhcccc-------ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC
Confidence 4589999994 4899999999999843 2347899999999999999999953 1 12345699999999
Q ss_pred CcEEECCCCCCCCcccEEEEECCEEEEEccCC--CCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCC
Q 005735 471 DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN--GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGY 548 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~--~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~ 548 (680)
++|+.++++|.+|..|++++++++||++||.. +...++++++||+.+++|+.++++|.+|..++++.++++||++||.
T Consensus 88 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 88 SEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp TEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred CcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 99999999999999999999999999999975 4556889999999999999999999999999999999999999997
Q ss_pred C-CCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccce
Q 005735 549 D-GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYL 627 (680)
Q Consensus 549 ~-~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~ 627 (680)
+ .....+++++||+.+++|+.++++|.+|..|++++++++||++||.+.....+++++||+.+++|+.++++|.+|..|
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 4 345688999999999999999999999999999999999999999877666788999999999999999999999999
Q ss_pred EEEEECCEEEEEecccCC--------CcccceEEEEcCC-CCeEecccCCCCCcceeEEEEC
Q 005735 628 GAAVVKEAIYVIGGVKNG--------SEIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 680 (680)
Q Consensus 628 s~v~~~~~lyV~GG~~~~--------~~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~~ 680 (680)
++++++++|||+||.... .....++++|++. ++|+.+ +|.. |..|+++++
T Consensus 248 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~-r~~~~~~~~ 306 (318)
T 2woz_A 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEI-RYASGASCL 306 (318)
T ss_dssp EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCC-GGGTTCEEE
T ss_pred EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccc-cccccceee
Confidence 999999999999998652 1356889999999 999998 5665 777777653
No 7
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=344.99 Aligned_cols=259 Identities=30% Similarity=0.500 Sum_probs=239.8
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCC
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGN 457 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~ 457 (680)
.|..+..+|.++..+..+..++.||++||.++....+++++||+.+++|..+++||.+|..|++++++++|||+||..+.
T Consensus 41 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 120 (302)
T 2xn4_A 41 RWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS
T ss_pred cEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC
Confidence 47777778888888777777999999999987778899999999999999999999999999999999999999999877
Q ss_pred CccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCC--cccceEEEEeCCCccEEEcccccccccceEE
Q 005735 458 SWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGL--ECFSDVEMLDLDIGKWIRTRSMLQKRFALAA 535 (680)
Q Consensus 458 ~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~--~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~ 535 (680)
...+++++||+.+++|+.++++|.+|..|++++++++||++||.+.. ..++++++||+.+++|+.++++|.+|..+++
T Consensus 121 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 200 (302)
T 2xn4_A 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV 200 (302)
T ss_dssp CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE
Confidence 77899999999999999999999999999999999999999997654 3578999999999999999999999999999
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
+.++++||++||.++....+++++||+.+++|+.++.+|.+|..|+++.++++||++||.++.....++++||+++++|+
T Consensus 201 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 201 GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 99999999999998877788999999999999999999999999999999999999999887777889999999999999
Q ss_pred EcC-CCCCCccceEEEEECCEE
Q 005735 616 SGE-PMKLSRGYLGAAVVKEAI 636 (680)
Q Consensus 616 ~v~-~lp~~R~~~s~v~~~~~l 636 (680)
.++ .+|.+|..|++++++++|
T Consensus 281 ~~~~~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 281 VVSSCMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp ECSSCCSSCCBSCEEEEEEC--
T ss_pred ECCcccCcccccceEEEecccC
Confidence 997 899999999999998875
No 8
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4.5e-40 Score=353.10 Aligned_cols=284 Identities=17% Similarity=0.173 Sum_probs=237.4
Q ss_pred hhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCC--CCeEEEcCCCC-CCccceEEEEECCEEEEEecC-C--
Q 005735 382 MYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPS--CDVIKTLKPMS-SARSYASAAMLNGELYIFGGG-D-- 455 (680)
Q Consensus 382 ~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~--t~~W~~l~~mp-~~R~~~s~v~~~~~IyV~GG~-~-- 455 (680)
++.+|.++..++++..++.||++||.++ +++++||+. +++|..+++|| .+|..|++++++++|||+||. .
T Consensus 3 l~~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~ 78 (357)
T 2uvk_A 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNS 78 (357)
T ss_dssp SCCCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECT
T ss_pred CCCCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCC
Confidence 3456777777777777999999999764 479999998 49999999999 899999999999999999998 2
Q ss_pred --CCCccceEEEEeCCCCcEEECCCCC-CCCcccEEEEECCEEEEEccCCCCc---------------------------
Q 005735 456 --GNSWHNTVESYSPANDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGGNGLE--------------------------- 505 (680)
Q Consensus 456 --~~~~~~~v~vyD~~t~~W~~l~~lp-~~r~~~a~~v~~gkIyV~GG~~~~~--------------------------- 505 (680)
....++++++||+.+++|+.+++++ .+|..|++++++++||++||.+...
T Consensus 79 ~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp TSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 2456789999999999999999998 8999999999999999999986432
Q ss_pred -------ccceEEEEeCCCccEEEcccccccccc-eEEEEECCEEEEEcCCCCC-CcCceeEEEeC--CCCcEEEeccCC
Q 005735 506 -------CFSDVEMLDLDIGKWIRTRSMLQKRFA-LAAAELNGVLYATGGYDGN-EYMNSAERFDP--REHYWTKIANMN 574 (680)
Q Consensus 506 -------~~~~ve~yD~~t~~W~~i~~~p~~r~~-~s~~~~~g~Lyv~GG~~~~-~~~~~v~~yD~--~t~~W~~v~~~p 574 (680)
.++++++||+.+++|+.++++|.++.. ++++.++++||++||.++. ...+.+++||+ .+++|+.++.+|
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS
T ss_pred ccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC
Confidence 358999999999999999999976554 9999999999999997644 35678999976 899999999887
Q ss_pred CCC--ceeEEEEECCEEEEEeccCCC-----------------CCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCE
Q 005735 575 RRR--GCHSLAVLNGKLYALGGFDGS-----------------AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA 635 (680)
Q Consensus 575 ~~r--~~~s~v~~~~~IyviGG~~~~-----------------~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~ 635 (680)
.+| ..|++++++++||++||.+.. ....++++||+.+++|+.++.+|.+|..|+++.++++
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 318 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNS 318 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTE
T ss_pred CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCE
Confidence 664 467789999999999996421 2235789999999999999999999999999999999
Q ss_pred EEEEecccCCCcccceEEEEcCC-CCeEecccCCC
Q 005735 636 IYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAI 669 (680)
Q Consensus 636 lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p~ 669 (680)
||||||.+.++..++++++|+.. ++|....++|.
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 99999998877778999999988 99999877664
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.9e-39 Score=341.98 Aligned_cols=255 Identities=30% Similarity=0.537 Sum_probs=238.6
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecC----CCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEec
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGC----DGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGG 453 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~----~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG 453 (680)
.|..+..+|.++..+..+..++.||++||. .+...++++++||+.+++|+.+++||.+|..|++++++++|||+||
T Consensus 50 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 129 (308)
T 1zgk_A 50 TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECC
T ss_pred eEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcC
Confidence 377777788888888777789999999998 5666788999999999999999999999999999999999999999
Q ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccce
Q 005735 454 GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFAL 533 (680)
Q Consensus 454 ~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~ 533 (680)
..+....+++++||+.+++|+.++++|.+|..|++++++++||++||.++...++++++||+.+++|+.++++|.+|..+
T Consensus 130 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 209 (308)
T 1zgk_A 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA 209 (308)
T ss_dssp EETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred CCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc
Confidence 88777788999999999999999999999999999999999999999887777899999999999999999999999999
Q ss_pred EEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 534 AAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 534 s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+++.++++||++||.++....+++++||+.+++|+.++++|.+|..+++++++++||++||.++.....++++||+++++
T Consensus 210 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 210 GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 99999999999999988777899999999999999999999999999999999999999999887778999999999999
Q ss_pred EEEcCCCCCCccceEEEEE
Q 005735 614 WMSGEPMKLSRGYLGAAVV 632 (680)
Q Consensus 614 W~~v~~lp~~R~~~s~v~~ 632 (680)
|+.++.+|.+|..++++++
T Consensus 290 W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 290 WSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp EEEEEECSSCCBSCEEEEC
T ss_pred EeecCCCCCCcccceeEeC
Confidence 9999999999999998864
No 10
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=339.91 Aligned_cols=256 Identities=19% Similarity=0.309 Sum_probs=238.9
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCC-C
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGD-G 456 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~-~ 456 (680)
.|..+..+|.++..+..+..++.||++||.+ ...++++++||+.+++|..+++||.+|..|++++++++|||+||.+ +
T Consensus 35 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 113 (306)
T 3ii7_A 35 SWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVG 113 (306)
T ss_dssp EEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTT
T ss_pred CEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCC
Confidence 4777788888888888888899999999988 6778999999999999999999999999999999999999999987 6
Q ss_pred CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcc----cceEEEEeCCCccEEEcccccccccc
Q 005735 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLEC----FSDVEMLDLDIGKWIRTRSMLQKRFA 532 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~----~~~ve~yD~~t~~W~~i~~~p~~r~~ 532 (680)
....+++++||+.+++|+.++++|.+|..|++++++++||++||...... .+++++||+.+++|+.++++|.+|..
T Consensus 114 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 193 (306)
T 3ii7_A 114 NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN 193 (306)
T ss_dssp BSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc
Confidence 66789999999999999999999999999999999999999999765544 88999999999999999999999999
Q ss_pred eEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 533 LAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 533 ~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++++.++++||++||.+.....+++++||+.+++|+.++++|.+|..+++++++++||++||.++....+++++||+.++
T Consensus 194 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 194 HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 99999999999999988777788999999999999999999999999999999999999999988778889999999999
Q ss_pred cEEEcCCCCCCccceEEEEECC
Q 005735 613 SWMSGEPMKLSRGYLGAAVVKE 634 (680)
Q Consensus 613 ~W~~v~~lp~~R~~~s~v~~~~ 634 (680)
+|..++.+|.+|..++++++.+
T Consensus 274 ~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 274 KWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp EEEEEEEEECCSCTTCEEEEEE
T ss_pred eEEeCCCcccccceeEEEEECC
Confidence 9999999999999999988744
No 11
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=336.94 Aligned_cols=256 Identities=30% Similarity=0.539 Sum_probs=239.7
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe---EEEcCCCCCCccceEEEEECCEEEEEecC
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV---IKTLKPMSSARSYASAAMLNGELYIFGGG 454 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~---W~~l~~mp~~R~~~s~v~~~~~IyV~GG~ 454 (680)
.|..+..+|.++..+..+..++.||++||.++....+++++||+.+++ |+.++++|.+|..|++++++++|||+||.
T Consensus 42 ~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 121 (301)
T 2vpj_A 42 EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGF 121 (301)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred eEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEccc
Confidence 477777778788888777789999999999877788999999999999 99999999999999999999999999999
Q ss_pred CCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceE
Q 005735 455 DGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALA 534 (680)
Q Consensus 455 ~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s 534 (680)
.+....+++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+|..++
T Consensus 122 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 201 (301)
T 2vpj_A 122 DGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG 201 (301)
T ss_dssp CSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccce
Confidence 87777899999999999999999999999999999999999999998877788999999999999999999999999999
Q ss_pred EEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 535 AAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 535 ~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
++.++++||++||.++....+++++||+.+++|+.++.+|.+|..|+++.++++||++||.++.....++++||+++++|
T Consensus 202 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 202 VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 99999999999999887778899999999999999999999999999999999999999988776678999999999999
Q ss_pred EEcCCCCCCccceEEEEEC
Q 005735 615 MSGEPMKLSRGYLGAAVVK 633 (680)
Q Consensus 615 ~~v~~lp~~R~~~s~v~~~ 633 (680)
+.++.+|.+|..|++++++
T Consensus 282 ~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 282 EVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp EEEEEEEEEEESCEEEEEE
T ss_pred EEcCCCCcccccceEEEeC
Confidence 9999999999999999874
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=337.23 Aligned_cols=256 Identities=18% Similarity=0.287 Sum_probs=231.4
Q ss_pred cccccceEEEcCCCEEEEEecCC------CCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCC---C
Q 005735 386 LLESSDELHLDPSESIYLVGGCD------GDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGD---G 456 (680)
Q Consensus 386 p~~~~~~~~v~~~~~Iyv~GG~~------~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~---~ 456 (680)
|.++..+..+..++.||++||.. .....+++++||+.+++|+.+++||.+|..|++++++++|||+||.. +
T Consensus 33 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 112 (315)
T 4asc_A 33 QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDG 112 (315)
T ss_dssp CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTT
T ss_pred CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCC
Confidence 34688888888899999999962 22334569999999999999999999999999999999999999964 3
Q ss_pred CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccC-CCCcccceEEEEeCCCccEEEcccccccccceEE
Q 005735 457 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGG-NGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAA 535 (680)
Q Consensus 457 ~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~-~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~ 535 (680)
....+++++||+.+++|+.++++|.+|..|++++++++||++||. .....++++++||+.+++|+.++++|.+|..+++
T Consensus 113 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 113 ERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192 (315)
T ss_dssp CCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred CcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence 667899999999999999999999999999999999999999998 5566789999999999999999999999999999
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCC---------CCCCeEEE
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS---------AMVPSIEV 606 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~---------~~~~~v~~ 606 (680)
+.++++||++||.++....+++++||+.+++|+.++++|.+|..|+++.++++||++||.++. ...+++++
T Consensus 193 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~ 272 (315)
T 4asc_A 193 TVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWR 272 (315)
T ss_dssp EEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEE
Confidence 999999999999988778889999999999999999999999999999999999999997531 24578999
Q ss_pred EeCCCCcEEEcCCCCCCccceEEEEECCEEEEEeccc
Q 005735 607 YDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVK 643 (680)
Q Consensus 607 yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~ 643 (680)
||+++++|+.+ ++.+|..+++++++++||++....
T Consensus 273 yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~v~~~~~ 307 (315)
T 4asc_A 273 YNEEEKKWEGV--LREIAYAAGATFLPVRLNVLRLTK 307 (315)
T ss_dssp EETTTTEEEEE--ESCSSCCSSCEEEEEEECGGGSEE
T ss_pred ecCCCChhhhh--ccCCcCccceEEeCCEEEEEEehh
Confidence 99999999999 677899999999999999997543
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=4.6e-38 Score=332.58 Aligned_cols=253 Identities=22% Similarity=0.346 Sum_probs=228.4
Q ss_pred ccccceEEEcCCCEEEEEecCC----C--CcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCC--CCC
Q 005735 387 LESSDELHLDPSESIYLVGGCD----G--DSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGD--GNS 458 (680)
Q Consensus 387 ~~~~~~~~v~~~~~Iyv~GG~~----~--~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~--~~~ 458 (680)
.++..+..+..++.||++||.. + ....+++++||+.+++|..+++||.+|..|++++++++|||+||.. +..
T Consensus 45 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 124 (318)
T 2woz_A 45 IPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEA 124 (318)
T ss_dssp SCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCC
T ss_pred CCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCc
Confidence 5677788888899999999963 1 1223459999999999999999999999999999999999999986 456
Q ss_pred ccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCC-CCcccceEEEEeCCCccEEEcccccccccceEEEE
Q 005735 459 WHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE 537 (680)
Q Consensus 459 ~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~-~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~ 537 (680)
..+++++||+.+++|+.++++|.+|..|++++++++||++||.. ....++++++||+.+++|+.++++|.+|..+++++
T Consensus 125 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 204 (318)
T 2woz_A 125 SLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI 204 (318)
T ss_dssp EEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred ccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE
Confidence 78899999999999999999999999999999999999999974 44568899999999999999999999999999999
Q ss_pred ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCC---------CCCCeEEEEe
Q 005735 538 LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS---------AMVPSIEVYD 608 (680)
Q Consensus 538 ~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~---------~~~~~v~~yD 608 (680)
++++||++||.+.....+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.. ....++++||
T Consensus 205 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 9999999999887777889999999999999999999999999999999999999997642 3467899999
Q ss_pred CCCCcEEEcCCCCCCccceEEEEECCEEEEEec
Q 005735 609 PRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGG 641 (680)
Q Consensus 609 ~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG 641 (680)
+.+++|+.+ +|.+|..|++++++++|||+..
T Consensus 285 ~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 285 DDKKEWAGM--LKEIRYASGASCLATRLNLFKL 315 (318)
T ss_dssp TTTTEEEEE--ESCCGGGTTCEEEEEEEEGGGC
T ss_pred CCCCEehhh--cccccccccceeeCCEEEEEEe
Confidence 999999999 7889999999999999999853
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.8e-35 Score=317.27 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=210.8
Q ss_pred EcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCC--CCcEEECCCCC-CCCcccEEEEECCEEEEEccC-C-
Q 005735 428 TLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA--NDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGG-N- 502 (680)
Q Consensus 428 ~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~--t~~W~~l~~lp-~~r~~~a~~v~~gkIyV~GG~-~- 502 (680)
.+++||.+|..+++++++++|||+||... +++++||+. +++|+.+++|| .+|..|++++++++|||+||. .
T Consensus 2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~ 77 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKN 77 (357)
T ss_dssp CSCCCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEEC
T ss_pred CCCCCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCC
Confidence 47889999999999999999999999764 479999998 49999999999 899999999999999999997 2
Q ss_pred ---CCcccceEEEEeCCCccEEEccccc-ccccceEEEEECCEEEEEcCCCCC---------------------------
Q 005735 503 ---GLECFSDVEMLDLDIGKWIRTRSML-QKRFALAAAELNGVLYATGGYDGN--------------------------- 551 (680)
Q Consensus 503 ---~~~~~~~ve~yD~~t~~W~~i~~~p-~~r~~~s~~~~~g~Lyv~GG~~~~--------------------------- 551 (680)
....++++++||+.+++|+.+++|+ .+|..++++.++++||++||.+..
T Consensus 78 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (357)
T 2uvk_A 78 SEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYF 157 (357)
T ss_dssp TTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhc
Confidence 2346789999999999999999888 899999999999999999998653
Q ss_pred -------CcCceeEEEeCCCCcEEEeccCCCCCce-eEEEEECCEEEEEeccCCC-CCCCeEEEEeC--CCCcEEEcCCC
Q 005735 552 -------EYMNSAERFDPREHYWTKIANMNRRRGC-HSLAVLNGKLYALGGFDGS-AMVPSIEVYDP--RLGSWMSGEPM 620 (680)
Q Consensus 552 -------~~~~~v~~yD~~t~~W~~v~~~p~~r~~-~s~v~~~~~IyviGG~~~~-~~~~~v~~yD~--~t~~W~~v~~l 620 (680)
..++++++||+.+++|+.++++|.++.. +++++++++||++||.+.. ....++++||+ .+++|+.++.+
T Consensus 158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~ 237 (357)
T 2uvk_A 158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237 (357)
T ss_dssp SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred cccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence 2468999999999999999999987665 9999999999999997543 34678999986 89999999988
Q ss_pred CCC--ccceEEEEECCEEEEEecccCCC----------------cccceEEEEcCC-CCeEecccCCCCCcceeEEEE
Q 005735 621 KLS--RGYLGAAVVKEAIYVIGGVKNGS----------------EIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVT 679 (680)
Q Consensus 621 p~~--R~~~s~v~~~~~lyV~GG~~~~~----------------~~~~~ve~y~~~-~~W~~v~~~p~~~r~~~sa~~ 679 (680)
+.+ |..+++++++++|||+||....+ ..+.++++|++. ++|+.++++|.+ |..|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 314 (357)
T 2uvk_A 238 SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLP 314 (357)
T ss_dssp STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBSSEEEE
T ss_pred CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-cccceeEE
Confidence 776 44777999999999999975432 234679999999 999999999987 88888775
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9.9e-34 Score=331.39 Aligned_cols=268 Identities=16% Similarity=0.169 Sum_probs=226.4
Q ss_pred hhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcC-C-----CCCCccceEEEEE--CCEEEEEecC
Q 005735 383 YEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLK-P-----MSSARSYASAAML--NGELYIFGGG 454 (680)
Q Consensus 383 ~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~-~-----mp~~R~~~s~v~~--~~~IyV~GG~ 454 (680)
+..|.++++++.+ .++.||++||.++ ..++++++||+.+++|..++ + ||.+|.+|+++++ +++|||+||.
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~ 460 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR 460 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCC
Confidence 4456677777665 6899999999977 77899999999999999998 5 7899999999999 9999999998
Q ss_pred CCCC-ccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEccc---cccc
Q 005735 455 DGNS-WHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS---MLQK 529 (680)
Q Consensus 455 ~~~~-~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~---~p~~ 529 (680)
.... .++++|+||+.+++|+.++++|.+|..|+++++ +++|||+||.+... ++++||+.+++|+.+++ +|.+
T Consensus 461 ~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~ 537 (695)
T 2zwa_A 461 KAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQN 537 (695)
T ss_dssp SSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGS
T ss_pred CCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCc
Confidence 8543 788999999999999999999999999999997 99999999987654 89999999999999986 8999
Q ss_pred ccceEEEEEC---CEEEEEcCCCCC--CcCceeEEEeCCCCc------EEEeccC-CCCCceeEEEEEC-CEEEEEeccC
Q 005735 530 RFALAAAELN---GVLYATGGYDGN--EYMNSAERFDPREHY------WTKIANM-NRRRGCHSLAVLN-GKLYALGGFD 596 (680)
Q Consensus 530 r~~~s~~~~~---g~Lyv~GG~~~~--~~~~~v~~yD~~t~~------W~~v~~~-p~~r~~~s~v~~~-~~IyviGG~~ 596 (680)
|..+++++++ ++||++||.... ..++++++||+.+++ |+.+..+ +.+|..|++++++ ++||++||.+
T Consensus 538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCcc
Confidence 9999988877 899999998543 678899999999999 9999886 5889999999998 9999999986
Q ss_pred CCC---CCCeEEEEeCCCCcEEEcCCCC--------CCccceEEEEECC-EEEEEecccCC---CcccceEEEEc
Q 005735 597 GSA---MVPSIEVYDPRLGSWMSGEPMK--------LSRGYLGAAVVKE-AIYVIGGVKNG---SEIVDTVERFK 656 (680)
Q Consensus 597 ~~~---~~~~v~~yD~~t~~W~~v~~lp--------~~R~~~s~v~~~~-~lyV~GG~~~~---~~~~~~ve~y~ 656 (680)
... ..+++++||+.+++|..+. +| ..+..|+++.+++ +|||+||.... +...+.++.++
T Consensus 618 ~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ld 691 (695)
T 2zwa_A 618 PSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLI 691 (695)
T ss_dssp SSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEE
T ss_pred CCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEE
Confidence 543 5788999999999999653 22 2356688888766 99999996432 33344555554
No 16
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.6e-33 Score=327.54 Aligned_cols=295 Identities=18% Similarity=0.273 Sum_probs=234.9
Q ss_pred hhhhhhhhcccccceEEEcC-CCEEEEEecCCCCc------ccCeEEEEeCCCCeEEEcCCCCCCccceE--EEE-ECCE
Q 005735 378 TKECMYEKLLESSDELHLDP-SESIYLVGGCDGDS------WLSTLELYLPSCDVIKTLKPMSSARSYAS--AAM-LNGE 447 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~-~~~Iyv~GG~~~~~------~~~~v~~yd~~t~~W~~l~~mp~~R~~~s--~v~-~~~~ 447 (680)
.|..+..+|.. ..+.++.+ +++||++||.+... ....+++||+.+++|..++.|+.+|..++ +++ .+++
T Consensus 177 ~W~~~~~~P~~-~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~ 255 (656)
T 1k3i_A 177 RWGPTIDLPIV-PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ 255 (656)
T ss_dssp EEEEEEECSSC-CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC
T ss_pred eeeeeccCCCC-ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC
Confidence 37666666653 34555555 99999999985422 34579999999999999998888776553 343 4899
Q ss_pred EEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEcc-CCCCcccceEEEEeCCCccEEEc--
Q 005735 448 LYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGG-GNGLECFSDVEMLDLDIGKWIRT-- 523 (680)
Q Consensus 448 IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG-~~~~~~~~~ve~yD~~t~~W~~i-- 523 (680)
|||+||.... ++++||+.+++|+.+++|+.+|..|+++++ +++|||+|| .++...++++++||+.+++|+.+
T Consensus 256 lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~ 331 (656)
T 1k3i_A 256 IVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN 331 (656)
T ss_dssp EEEECSSSTT----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred EEEeCCCCCC----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCC
Confidence 9999997643 799999999999999999999999999999 999999999 46666788999999999999997
Q ss_pred ---ccccccccceEEEEECCEEEEEcCCCCC----CcCceeEEEeCCCCcEEEecc-CCC------CCceeEEEE---EC
Q 005735 524 ---RSMLQKRFALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHYWTKIAN-MNR------RRGCHSLAV---LN 586 (680)
Q Consensus 524 ---~~~p~~r~~~s~~~~~g~Lyv~GG~~~~----~~~~~v~~yD~~t~~W~~v~~-~p~------~r~~~s~v~---~~ 586 (680)
.+|+..+.. +++..++++|++||.++. ...+.+++||+.++.|..... .+. .+..++++. .+
T Consensus 332 ~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~ 410 (656)
T 1k3i_A 332 AKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK 410 (656)
T ss_dssp SCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred cccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC
Confidence 456666543 555679999999998765 246789999999999875432 211 233455553 48
Q ss_pred CEEEEEeccCC---CCCCC---eEEEEeCCCCcEEEcC--CCCCCccceEEEEE-CCEEEEEecccCC-----CcccceE
Q 005735 587 GKLYALGGFDG---SAMVP---SIEVYDPRLGSWMSGE--PMKLSRGYLGAAVV-KEAIYVIGGVKNG-----SEIVDTV 652 (680)
Q Consensus 587 ~~IyviGG~~~---~~~~~---~v~~yD~~t~~W~~v~--~lp~~R~~~s~v~~-~~~lyV~GG~~~~-----~~~~~~v 652 (680)
++||++||.+. ..... .+++||+.+++|..+. .||.+|..++++++ +++|||+||.... ...+.++
T Consensus 411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v 490 (656)
T 1k3i_A 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 490 (656)
T ss_dssp TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence 99999999642 23344 7899999999999986 99999999999988 9999999997632 2467889
Q ss_pred EEEcCC-CCeEecccCCCCCcceeEEEE
Q 005735 653 ERFKEG-QGWEEINSRAIGKRCFMSVVT 679 (680)
Q Consensus 653 e~y~~~-~~W~~v~~~p~~~r~~~sa~~ 679 (680)
++||+. ++|+.+++++.+ |.+|++++
T Consensus 491 ~~ydp~t~~W~~~~~~~~~-R~~hs~a~ 517 (656)
T 1k3i_A 491 EIYVPEQDTFYKQNPNSIV-RVYHSISL 517 (656)
T ss_dssp EEEEGGGTEEEECCCCSSC-CCTTEEEE
T ss_pred EEEcCCCCceeecCCCCCc-cccccHhh
Confidence 999999 999999999987 99988765
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.98 E-value=2.4e-31 Score=311.15 Aligned_cols=250 Identities=13% Similarity=0.152 Sum_probs=213.9
Q ss_pred CeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECC-C-----CCCCCcccEEEEE--CCEE
Q 005735 424 DVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRP-S-----LNGTKGSLAGATI--DNKI 495 (680)
Q Consensus 424 ~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~-~-----lp~~r~~~a~~v~--~gkI 495 (680)
.+|...+..|..|++++++ ++++|||+||... ...+++++||+.+++|+.++ + +|.+|..|+++++ +++|
T Consensus 377 ~~~~~~~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 377 YQLLECECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp EEEEECCCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred eeEeccCCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 3456666667777766544 8999999999877 77889999999999999987 5 7899999999999 9999
Q ss_pred EEEccCCCCc-ccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc-
Q 005735 496 FAIGGGNGLE-CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN- 572 (680)
Q Consensus 496 yV~GG~~~~~-~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~- 572 (680)
||+||.+... .++++++||+.+++|+.+++||.+|..|+++.+ +++||++||.+... ++++||+.+++|+.++.
T Consensus 455 yv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 455 LLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp EEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCS
T ss_pred EEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCC
Confidence 9999987654 688999999999999999999999999999997 99999999987655 89999999999999986
Q ss_pred --CCCCCceeEEEEEC---CEEEEEeccCCC--CCCCeEEEEeCCCCc------EEEcCCC-CCCccceEEEEEC-CEEE
Q 005735 573 --MNRRRGCHSLAVLN---GKLYALGGFDGS--AMVPSIEVYDPRLGS------WMSGEPM-KLSRGYLGAAVVK-EAIY 637 (680)
Q Consensus 573 --~p~~r~~~s~v~~~---~~IyviGG~~~~--~~~~~v~~yD~~t~~------W~~v~~l-p~~R~~~s~v~~~-~~ly 637 (680)
+|.+|..|++++++ ++||++||.... ...+++++||+.+++ |+.+..+ +.+|..|++++++ ++||
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy 611 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL 611 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence 89999999988876 899999998543 567899999999999 8998876 4889999999999 9999
Q ss_pred EEecccCCC--cccceEEEEcCC-CCeEecccCCC-------CCcceeEEEE
Q 005735 638 VIGGVKNGS--EIVDTVERFKEG-QGWEEINSRAI-------GKRCFMSVVT 679 (680)
Q Consensus 638 V~GG~~~~~--~~~~~ve~y~~~-~~W~~v~~~p~-------~~r~~~sa~~ 679 (680)
|+||....+ ...+++++|++. ++|+.+. +|. +.+..|++++
T Consensus 612 v~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~ 662 (695)
T 2zwa_A 612 IVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVS 662 (695)
T ss_dssp EECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEEC
T ss_pred EECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEE
Confidence 999987554 367899999999 9999653 221 2355677664
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=6.5e-30 Score=297.24 Aligned_cols=275 Identities=20% Similarity=0.266 Sum_probs=218.2
Q ss_pred hhhhhhhccccc---ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEec-
Q 005735 379 KECMYEKLLESS---DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGG- 453 (680)
Q Consensus 379 ~~~~~~~p~~~~---~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG- 453 (680)
|..+..++.++. ...++..++.||++||.+.. ++++||+.+++|..+++|+.+|.+|+++++ +++|||+||
T Consensus 231 w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 231 VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCC
T ss_pred EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCc
Confidence 655555554432 23455679999999998643 699999999999999999999999999999 999999999
Q ss_pred CCCCCccceEEEEeCCCCcEEEC-----CCCCCCCcccEEEEECCEEEEEccCCCCc----ccceEEEEeCCCccEEEcc
Q 005735 454 GDGNSWHNTVESYSPANDEWTSR-----PSLNGTKGSLAGATIDNKIFAIGGGNGLE----CFSDVEMLDLDIGKWIRTR 524 (680)
Q Consensus 454 ~~~~~~~~~v~vyD~~t~~W~~l-----~~lp~~r~~~a~~v~~gkIyV~GG~~~~~----~~~~ve~yD~~t~~W~~i~ 524 (680)
.++....+++++||+.+++|+.+ .+|+..+.. +++..++++|++||.++.. ..+.++.||+.++.|....
T Consensus 307 ~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~ 385 (656)
T 1k3i_A 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 385 (656)
T ss_dssp CCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred ccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence 45566788999999999999997 445555543 5556799999999976542 3678999999999987542
Q ss_pred c-ccc------cccceEEEE---ECCEEEEEcCCCC---CCcCc---eeEEEeCCCCcEEEec--cCCCCCceeEEEEE-
Q 005735 525 S-MLQ------KRFALAAAE---LNGVLYATGGYDG---NEYMN---SAERFDPREHYWTKIA--NMNRRRGCHSLAVL- 585 (680)
Q Consensus 525 ~-~p~------~r~~~s~~~---~~g~Lyv~GG~~~---~~~~~---~v~~yD~~t~~W~~v~--~~p~~r~~~s~v~~- 585 (680)
. .+. .+..++++. .+++||++||.+. ...++ .+++||+.+++|..+. .||.+|..|+++++
T Consensus 386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~ 465 (656)
T 1k3i_A 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP 465 (656)
T ss_dssp EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT
T ss_pred CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC
Confidence 2 221 233444443 4899999999643 33444 7899999999999996 99999999998888
Q ss_pred CCEEEEEeccCC------CCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEecccCCC--cccceEEEE
Q 005735 586 NGKLYALGGFDG------SAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGS--EIVDTVERF 655 (680)
Q Consensus 586 ~~~IyviGG~~~------~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~--~~~~~ve~y 655 (680)
+++||++||.+. .....++++||+.+++|+.+++++.+|.+|+++++ +++|||+||..... ...-++|+|
T Consensus 466 ~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~ 545 (656)
T 1k3i_A 466 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 545 (656)
T ss_dssp TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEE
T ss_pred CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEE
Confidence 999999999652 24567899999999999999999999999999888 99999999964332 233468899
Q ss_pred cCC
Q 005735 656 KEG 658 (680)
Q Consensus 656 ~~~ 658 (680)
.|.
T Consensus 546 ~Pp 548 (656)
T 1k3i_A 546 TPN 548 (656)
T ss_dssp ECG
T ss_pred eCh
Confidence 876
No 19
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.29 E-value=0.00012 Score=79.34 Aligned_cols=227 Identities=12% Similarity=0.168 Sum_probs=124.3
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
..++..++..++.|+.+ ..+.+||..+.+.... +........+...++.+++.|+.++ .+.+||..++
T Consensus 136 v~~~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~ 203 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRD-----NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS-----TVRVWDVNTG 203 (435)
T ss_dssp EEEEECCSSEEEEEESS-----SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS-----CEEEEESSSC
T ss_pred EEEEEECCCEEEEEeCC-----CeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCCC-----eEEEEECCCC
Confidence 34555677788888765 3588889887654332 1122222233344778888888663 5888998877
Q ss_pred cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEc-ccccccccceEEEEECCEEEEEcCCCC
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT-RSMLQKRFALAAAELNGVLYATGGYDG 550 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~~~p~~r~~~s~~~~~g~Lyv~GG~~~ 550 (680)
+-... +........+..+++..++.|+.++ .+.+||+.+..-... ..+........++..++..++.|+.++
T Consensus 204 ~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 276 (435)
T 1p22_A 204 EMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276 (435)
T ss_dssp CEEEE--ECCCCSCEEEEECCTTEEEEEETTS-----CEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred cEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC
Confidence 54322 1112222333444566677776543 477888877652211 111111122223344666677776653
Q ss_pred CCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEE
Q 005735 551 NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAA 630 (680)
Q Consensus 551 ~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v 630 (680)
.+.+||..+.+-...- ........++..++.+++.|+.+ ..+.+||..+..-.. .+........++
T Consensus 277 -----~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~~ 342 (435)
T 1p22_A 277 -----TIKVWNTSTCEFVRTL--NGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLR--VLEGHEELVRCI 342 (435)
T ss_dssp -----EEEEEETTTCCEEEEE--ECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEE--EECCCSSCEEEE
T ss_pred -----eEEEEECCcCcEEEEE--cCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCCCCEEE--EEeCCcCcEEEE
Confidence 6889998876543221 11111223334456677777755 358899998754322 111122223344
Q ss_pred EECCEEEEEecccCCCcccceEEEEcC
Q 005735 631 VVKEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 631 ~~~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.+++..++.|+.++ .+.+|+.
T Consensus 343 ~~~~~~l~sg~~dg------~i~vwd~ 363 (435)
T 1p22_A 343 RFDNKRIVSGAYDG------KIKVWDL 363 (435)
T ss_dssp ECCSSEEEEEETTS------CEEEEEH
T ss_pred EecCCEEEEEeCCC------cEEEEEC
Confidence 44777888887654 3556653
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.14 E-value=0.0042 Score=64.79 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=132.0
Q ss_pred cCeEEEEeCCCCeEEEcC-----CCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcE-EECCCCCCCCccc
Q 005735 413 LSTLELYLPSCDVIKTLK-----PMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW-TSRPSLNGTKGSL 486 (680)
Q Consensus 413 ~~~v~~yd~~t~~W~~l~-----~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W-~~l~~lp~~r~~~ 486 (680)
...+..||+.++++...- ..+.......++..++++|+.... .+.+.++|+.+.+- ..++... .-.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~---~p~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFT---SPR 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCS---SEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCC---CCc
Confidence 467999999999876531 223334456677789999998763 25799999998876 3343222 222
Q ss_pred EEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccc----cccceEEEEECCEEEEEcCCCCCCcCceeEEEe
Q 005735 487 AGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ----KRFALAAAELNGVLYATGGYDGNEYMNSAERFD 561 (680)
Q Consensus 487 a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~----~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD 561 (680)
..+. -++++|+.... ...+.++|+.+++-...-+.+. ......++..++++|+..- ...+.+.++|
T Consensus 88 ~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~----~~~~~v~viD 158 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW----SYQNRILKID 158 (328)
T ss_dssp EEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC----TTCCEEEEEE
T ss_pred EEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC----CCCCEEEEEE
Confidence 3333 68899998632 3578899999887543211111 0022234447899999842 1134799999
Q ss_pred CCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCC-----CCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--C
Q 005735 562 PREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAM-----VPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--K 633 (680)
Q Consensus 562 ~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~-----~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~ 633 (680)
+.+++....-... ...+.++.. ++++|+....+.... ...++++|+.+.+....-.++.......++.. +
T Consensus 159 ~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 159 TETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp TTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred CCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 9988765432221 111233332 688887753211111 36799999998876543233333334455555 5
Q ss_pred CEEEEEecccCCCcccceEEEEcCC
Q 005735 634 EAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 634 ~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+.+|+..+ .+++|++.
T Consensus 237 ~~lyv~~~---------~v~~~d~~ 252 (328)
T 3dsm_A 237 DTLYWINN---------DIWRMPVE 252 (328)
T ss_dssp CEEEEESS---------SEEEEETT
T ss_pred CEEEEEcc---------EEEEEECC
Confidence 67888654 57888876
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.14 E-value=0.00062 Score=71.18 Aligned_cols=233 Identities=9% Similarity=-0.017 Sum_probs=138.5
Q ss_pred CCCEEEEEecCCCCcccCeEEEEeCCCCeE-EEcCCCCCCccceEEEE-ECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 397 PSESIYLVGGCDGDSWLSTLELYLPSCDVI-KTLKPMSSARSYASAAM-LNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 397 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W-~~l~~mp~~R~~~s~v~-~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
.++.+|+.... .+.+.++|+.+.+. ..++.. ...+.++. -++++||.... ...+.++|+.+++-.
T Consensus 52 ~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 52 RDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGF---TSPRYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEIT 118 (328)
T ss_dssp ETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECC---SSEEEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEE
T ss_pred ECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCC---CCCcEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEE
Confidence 47888888753 25699999998875 444332 23344444 68899998753 257999999998754
Q ss_pred ECCCCCCC----CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE-ECCEEEEEcCCC
Q 005735 475 SRPSLNGT----KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE-LNGVLYATGGYD 549 (680)
Q Consensus 475 ~l~~lp~~----r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~-~~g~Lyv~GG~~ 549 (680)
..-+.... ..-...+..++++||..-. ..+.+.++|+.+++....-+... ....++. -+|++|+....+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~----~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQYGKYVYVNCWS----YQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEEETTEEEEEECT----TCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCB
T ss_pred EEEEcCCccccCCCcceEEEECCEEEEEcCC----CCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCC
Confidence 22111110 0222344478899998421 23578999999987644322211 1112222 268888876432
Q ss_pred CCCc-----CceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCC
Q 005735 550 GNEY-----MNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL 622 (680)
Q Consensus 550 ~~~~-----~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~ 622 (680)
.... ...++++|+.+.+....-.++.......++.. ++.||+..+ .+++||+.+.+.....-.+.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~~~~ 264 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPFLEF 264 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCSBCC
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeeeecC
Confidence 1111 25799999998876644344433334455554 567888643 68999998876532222222
Q ss_pred -CccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 623 -SRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 623 -~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.....++++- ++.|||....+.. ....|.+|++.
T Consensus 265 ~~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d~~ 301 (328)
T 3dsm_A 265 RDTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYSPQ 301 (328)
T ss_dssp CSSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEECTT
T ss_pred CCCceEEEEEcCCCCeEEEEcccccc--cCCEEEEECCC
Confidence 2344455553 6889998732111 12578999987
No 22
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.07 E-value=0.00034 Score=75.85 Aligned_cols=226 Identities=12% Similarity=0.137 Sum_probs=115.2
Q ss_pred cCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCcc-ceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 396 DPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARS-YASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~-~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
..++.+++.|+.+ ..+.+||..+++-... +..... -.+++...+.+++.|+.++ .+.++|..+++-.
T Consensus 129 ~~~~~~l~sgs~d-----g~i~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~ 196 (464)
T 3v7d_B 129 QFEDNYVITGADD-----KMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGGILVSGSTDR-----TVRVWDIKKGCCT 196 (464)
T ss_dssp EEETTEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECSTTEEEEEETTS-----CEEEEETTTTEEE
T ss_pred EECCCEEEEEcCC-----CcEEEEECCCCcEEEE--EeCCCcCEEEEEEcCCCEEEEEeCCC-----CEEEEECCCCcEE
Confidence 3345567777654 3588899887763322 111222 2233333333667777653 5888998877543
Q ss_pred ECCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEcc---------------------cccccc
Q 005735 475 SRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR---------------------SMLQKR 530 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~---------------------~~p~~r 530 (680)
..-.-.. ..-.+.... ++..++.|+.++ .+.+||+.+..-.... .+....
T Consensus 197 ~~~~~h~-~~v~~l~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 197 HVFEGHN-STVRCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp EEECCCS-SCEEEEEEEESSSCEEEEEEETTS-----CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred EEECCCC-CccEEEEEecCCCCCEEEEEcCCC-----cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 2211111 111122222 557777777553 4667777765421100 000011
Q ss_pred cceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeC
Q 005735 531 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDP 609 (680)
Q Consensus 531 ~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~ 609 (680)
....++..++.+++.|+.++ .+.+||..+.+-...-.. ......+++.. ++..++.|+.+ ..+.+||+
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~ 339 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDN-----TLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMD-----TTIRIWDL 339 (464)
T ss_dssp SCEEEEEEETTEEEEEETTS-----CEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETT-----SCEEEEET
T ss_pred ceEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEEC
Confidence 11122234556667776654 688999887654332211 12222333333 55667777755 34889999
Q ss_pred CCCcEEEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 610 RLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 610 ~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.+.+-.. .+.........+.+++..++.|+.++ .+.+|+..
T Consensus 340 ~~~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~dg------~v~vwd~~ 380 (464)
T 3v7d_B 340 ENGELMY--TLQGHTALVGLLRLSDKFLVSAAADG------SIRGWDAN 380 (464)
T ss_dssp TTTEEEE--EECCCSSCEEEEEECSSEEEEEETTS------EEEEEETT
T ss_pred CCCcEEE--EEeCCCCcEEEEEEcCCEEEEEeCCC------cEEEEECC
Confidence 8765332 22222233344455677777777654 36677655
No 23
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00062 Score=70.66 Aligned_cols=248 Identities=12% Similarity=0.114 Sum_probs=135.0
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--C--CEEEEEecCCCCCccceEEEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--N--GELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~--~~IyV~GG~~~~~~~~~v~vy 466 (680)
.+..+.+++.+++.|+.++ .+.+||.....+..+..+.........+.+ + +.+++.|+.++ .+.+|
T Consensus 15 ~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iw 84 (379)
T 3jrp_A 15 HDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIW 84 (379)
T ss_dssp EEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----CEEEE
T ss_pred EEEEEcCCCCEEEEEECCC-----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC-----EEEEE
Confidence 3455666777888887653 477788776666655444433333333333 2 67777777653 58889
Q ss_pred eCCCCcEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc-cceEEEEE---
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR-FALAAAEL--- 538 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r-~~~s~~~~--- 538 (680)
|..+++|.....+........++.+ + +.+++.|+.+ ..+.+||+.+..-.....+.... ...+++..
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 9999887665544433333333333 3 5677777654 35778888776321111111111 11112211
Q ss_pred -----------CCEEEEEcCCCCCCcCceeEEEeCCCC--cEEEeccCCCCCc-eeEEEEE-C---CEEEEEeccCCCCC
Q 005735 539 -----------NGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANMNRRRG-CHSLAVL-N---GKLYALGGFDGSAM 600 (680)
Q Consensus 539 -----------~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~p~~r~-~~s~v~~-~---~~IyviGG~~~~~~ 600 (680)
++.+++.|+.++ .+.+||..+. .|..+..+..... ..+++.. + +.+++.|+.++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg--- 231 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR--- 231 (379)
T ss_dssp ----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS---
T ss_pred ccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC---
Confidence 467778887664 5777887554 3555544432222 2233332 4 68888888654
Q ss_pred CCeEEEEeCCCCc----EEEcCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC--CCeEecccCCC
Q 005735 601 VPSIEVYDPRLGS----WMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINSRAI 669 (680)
Q Consensus 601 ~~~v~~yD~~t~~----W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~--~~W~~v~~~p~ 669 (680)
.+.+||..+.. ..............+++.. ++.++++|+.++ .+.+|+.. ..|..+.....
T Consensus 232 --~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 232 --TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------KVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp --CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS------SEEEEEEEETTEEEEEEEEC-
T ss_pred --EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC------cEEEEeCCCCCccccccceec
Confidence 47788887652 2222221122222222222 677777777654 36666654 77877665444
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.00 E-value=0.00059 Score=73.77 Aligned_cols=223 Identities=17% Similarity=0.266 Sum_probs=119.9
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
+..++..++.|+.+ ..+.+||..++..... +......-......+.+++.|+.++ .+.+||..+++-.
T Consensus 125 ~~~~g~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~ 192 (445)
T 2ovr_B 125 LQFCGNRIVSGSDD-----NTLKVWSAVTGKCLRT--LVGHTGGVWSSQMRDNIIISGSTDR-----TLKVWNAETGECI 192 (445)
T ss_dssp EEEETTEEEEEETT-----SCEEEEETTTCCEEEE--CCCCSSCEEEEEEETTEEEEEETTS-----CEEEEETTTTEEE
T ss_pred EEEcCCEEEEEECC-----CcEEEEECCCCcEEEE--EcCCCCCEEEEEecCCEEEEEeCCC-----eEEEEECCcCcEE
Confidence 34456667777754 3588899887654322 2222222222333455666777653 5888998877542
Q ss_pred ECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcC
Q 005735 475 SRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYM 554 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~ 554 (680)
.. +........+..+++..++.|+.+ ..+.+||+.+++-... +........++..++..++.|+.++
T Consensus 193 ~~--~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg---- 259 (445)
T 2ovr_B 193 HT--LYGHTSTVRCMHLHEKRVVSGSRD-----ATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAYDF---- 259 (445)
T ss_dssp EE--ECCCSSCEEEEEEETTEEEEEETT-----SEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEEEETTS----
T ss_pred EE--ECCCCCcEEEEEecCCEEEEEeCC-----CEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEEEcCCC----
Confidence 21 111122223334455566666654 3577899887653221 1111122233444778888887664
Q ss_pred ceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECC
Q 005735 555 NSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 634 (680)
Q Consensus 555 ~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~ 634 (680)
.+.+||..+.+-.. .+.........+.+++..++.|+.+ ..+.+||..+..-... +............++
T Consensus 260 -~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~ 329 (445)
T 2ovr_B 260 -MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLD-----TSIRVWDVETGNCIHT--LTGHQSLTSGMELKD 329 (445)
T ss_dssp -CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCCSCEEEEEEET
T ss_pred -EEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCC-----CeEEEEECCCCCEEEE--EcCCcccEEEEEEeC
Confidence 67889987764322 2221122223334477777777765 3588999887653321 111122223334456
Q ss_pred EEEEEecccCCCcccceEEEEcCC
Q 005735 635 AIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 635 ~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
..++.|+.++ .+.+|+..
T Consensus 330 ~~l~~~~~dg------~i~vwd~~ 347 (445)
T 2ovr_B 330 NILVSGNADS------TVKIWDIK 347 (445)
T ss_dssp TEEEEEETTS------CEEEEETT
T ss_pred CEEEEEeCCC------eEEEEECC
Confidence 6777777554 36677754
No 25
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.66 E-value=0.013 Score=59.01 Aligned_cols=188 Identities=16% Similarity=0.112 Sum_probs=121.5
Q ss_pred ccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeC
Q 005735 436 RSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDL 515 (680)
Q Consensus 436 R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~ 515 (680)
-+-.++...++.||+-.|..+. +.+.++|+.+++-...-+++......+.+..+++||+.... .+.+.+||+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEET
T ss_pred cccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEEC
Confidence 3344677779999999887543 46899999999876655666555666778889999998543 467899999
Q ss_pred CCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe---ccCCCCC-ceeEEEEECCEEEE
Q 005735 516 DIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI---ANMNRRR-GCHSLAVLNGKLYA 591 (680)
Q Consensus 516 ~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v---~~~p~~r-~~~s~v~~~~~Iyv 591 (680)
.+.+-... ++.+..+.+++.-+++||+.-| .+.++++|+.+.+-..- ...+.+. ....+...+++||+
T Consensus 93 ~tl~~~~t--i~~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lya 164 (243)
T 3mbr_X 93 ATLTPRAR--FRYPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLA 164 (243)
T ss_dssp TTTEEEEE--EECSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred CcCcEEEE--EeCCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEE
Confidence 98764332 2222345556655778999755 24799999998654322 1222221 11234445899886
Q ss_pred EeccCCCCCCCeEEEEeCCCCcE---EEcCCCCC---------CccceEEEEE--CCEEEEEecccC
Q 005735 592 LGGFDGSAMVPSIEVYDPRLGSW---MSGEPMKL---------SRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 592 iGG~~~~~~~~~v~~yD~~t~~W---~~v~~lp~---------~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
--- ..+.|.+.|+++++= ..++.+.. .-...+++.. ++++||.|=...
T Consensus 165 nvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 165 NVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp EET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred EEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 532 246899999998753 34443311 1122445554 588999997765
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.64 E-value=0.007 Score=62.62 Aligned_cols=246 Identities=11% Similarity=0.129 Sum_probs=126.9
Q ss_pred ccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccc-eEEEEE-CCEEEEEecCCCCCccceEEEE
Q 005735 389 SSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSY-ASAAML-NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~-~s~v~~-~~~IyV~GG~~~~~~~~~v~vy 466 (680)
...+..+.+++.++++|+.+ ..+.+||..++.+..+..+...... .+++.. ++.+++.|+.++ .+.+|
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw 79 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR-----NAYVW 79 (372)
T ss_dssp CCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS-----CEEEE
T ss_pred CeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC-----eEEEE
Confidence 34566677788888888764 3688899988876655444333222 233333 566777777553 58888
Q ss_pred eCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc-EEEccccccc-ccceEEEEE--CC
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK-WIRTRSMLQK-RFALAAAEL--NG 540 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~i~~~p~~-r~~~s~~~~--~g 540 (680)
|..+.++.....+........++.+ +++.++.|+.++ .+.+||..+.. |........+ ......+.+ ++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 9888876554332222222223333 566777776543 35667766554 3332222111 111222222 56
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCC----------------cEEEeccCCC-CCceeEEEEE-CCEEEEEeccCCCCCCC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREH----------------YWTKIANMNR-RRGCHSLAVL-NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~----------------~W~~v~~~p~-~r~~~s~v~~-~~~IyviGG~~~~~~~~ 602 (680)
.+++.|+.++ .+.+||.... .-..+..+.. .....+++.. ++..++.|+.+ .
T Consensus 155 ~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~ 224 (372)
T 1k8k_C 155 VLLAAGSCDF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----S 224 (372)
T ss_dssp SEEEEEETTS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----T
T ss_pred CEEEEEcCCC-----CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----C
Confidence 6777777654 5778885411 1112222221 1112222222 55566667654 4
Q ss_pred eEEEEeCCCCcEEEcCCCCCCc-cceEEEEE-CCEEEEEecccCCCcccceEEEEcCC---CCeEecccCC
Q 005735 603 SIEVYDPRLGSWMSGEPMKLSR-GYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG---QGWEEINSRA 668 (680)
Q Consensus 603 ~v~~yD~~t~~W~~v~~lp~~R-~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~---~~W~~v~~~p 668 (680)
.+.+||..+..-... +.... ...+++.. ++.+++.| .++ .+.+|+.. +.|..+..+.
T Consensus 225 ~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~d~------~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 225 TVCLADADKKMAVAT--LASETLPLLAVTFITESSLVAAG-HDC------FPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp EEEEEEGGGTTEEEE--EECSSCCEEEEEEEETTEEEEEE-TTS------SCEEEEEETTTTEEEECCCCC
T ss_pred EEEEEECCCCceeEE--EccCCCCeEEEEEecCCCEEEEE-eCC------eEEEEEccCcCceEEEeeccC
Confidence 588999876653322 11111 11222222 67766655 332 24555532 5687765543
No 27
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.62 E-value=0.053 Score=56.89 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=129.1
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCC-------CCccceEEEEECCEEEEEecCCCCCccceEEEEeC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMS-------SARSYASAAMLNGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp-------~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
++.||+.... ..++.||..+++ |+.-.... ........+..++.||+.... ..++.+|.
T Consensus 53 ~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~------g~l~a~d~ 120 (376)
T 3q7m_A 53 DNVVYAADRA------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK------AQVYALNT 120 (376)
T ss_dssp TTEEEEECTT------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT------SEEEEEET
T ss_pred CCEEEEEcCC------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC------CEEEEEEC
Confidence 7888886542 368999998764 76543211 122334456668999986532 36899999
Q ss_pred CCCc--EEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccc--cccceEEEEECCEE
Q 005735 469 ANDE--WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQ--KRFALAAAELNGVL 542 (680)
Q Consensus 469 ~t~~--W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~--~r~~~s~~~~~g~L 542 (680)
.+++ |+.-..- . ...+.++.++.+|+..+ ...+..||+.+++ |+.-...+. .+.....+..++.+
T Consensus 121 ~tG~~~W~~~~~~--~-~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v 191 (376)
T 3q7m_A 121 SDGTVAWQTKVAG--E-ALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAA 191 (376)
T ss_dssp TTCCEEEEEECSS--C-CCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEE
T ss_pred CCCCEEEEEeCCC--c-eEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEE
Confidence 8764 7653221 1 12223456888888543 2368899998875 876432221 12223344558887
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCC--------ceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRR--------GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r--------~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
|+ |..+ ..+..||+.+++ |+.-...+... .....+..++.+|+.+. ...+..+|+.+.
T Consensus 192 ~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d~~tG 259 (376)
T 3q7m_A 192 VV-GGDN-----GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLTALDLRSG 259 (376)
T ss_dssp EE-CCTT-----TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT------TSCEEEEETTTC
T ss_pred EE-EcCC-----CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec------CcEEEEEECCCC
Confidence 77 3222 368899987764 76543322111 11233456888887642 235889999776
Q ss_pred --cEEEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC---CCeEec
Q 005735 613 --SWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG---QGWEEI 664 (680)
Q Consensus 613 --~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~---~~W~~v 664 (680)
.|..- .+ .....+..++.||+.... ..+..|++. -.|+.-
T Consensus 260 ~~~w~~~--~~---~~~~~~~~~~~l~~~~~~-------g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 260 QIMWKRE--LG---SVNDFIVDGNRIYLVDQN-------DRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CEEEEEC--CC---CEEEEEEETTEEEEEETT-------CCEEEEETTTCCEEEEEC
T ss_pred cEEeecc--CC---CCCCceEECCEEEEEcCC-------CeEEEEECCCCcEEEeec
Confidence 46643 11 133455668888887531 247788865 347653
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.53 E-value=0.016 Score=58.99 Aligned_cols=231 Identities=15% Similarity=0.201 Sum_probs=119.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++..++.|+.++ .+.++|..++.....-. ........+.+ ++.+++.|+.+ ..+.+||.
T Consensus 27 ~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~ 94 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDD-----KTLKIWDV 94 (312)
T ss_dssp EEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred EEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhc--cCCCceEEEEEcCCCCEEEEECCC-----CEEEEEEC
Confidence 4556667788888888653 47788887776544321 11112222222 56777777765 36888998
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYA 544 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv 544 (680)
.+.+-... +........++.+ ++.+++.|+.++ .+.+||+.+++-... ++........+.+ ++.+++
T Consensus 95 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 95 SSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEE
Confidence 87653221 1111111122222 556777776553 477899887653221 1111111222223 566777
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCCcEEE-cCCCCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-GEPMKL 622 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~-v~~lp~ 622 (680)
.|+.++ .+.+||..+.+....-..........++. .++..++.|+.+ ..+.+||..+..-.. +.....
T Consensus 166 ~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 166 SSSYDG-----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp EEETTS-----CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECSSCC
T ss_pred EEeCCC-----cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEecCC
Confidence 777664 68899988766433211111111112222 256666677654 468899998765332 221111
Q ss_pred Ccc-ceEE-EEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 623 SRG-YLGA-AVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 623 ~R~-~~s~-v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
... .... ...++.+++.||.++. +.+|+..
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~------i~vwd~~ 267 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNL------VYIWNLQ 267 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSC------EEEEETT
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCE------EEEEECC
Confidence 111 1111 1235667777776542 5555543
No 29
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.50 E-value=0.0031 Score=66.24 Aligned_cols=185 Identities=15% Similarity=0.153 Sum_probs=102.9
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
+.+|+.|+.+ ..+.++|..+++....-... ....+++.. +..||+.|+.+ ..+.++|..+++....
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~ 69 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIAT 69 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEE
Confidence 3567777654 36889999888654432211 122333332 44677777644 4689999988865443
Q ss_pred CCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCC
Q 005735 477 PSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNE 552 (680)
Q Consensus 477 ~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~ 552 (680)
-.... .-.+.+.. ++ .||+.+..+ ..+.+||+.+++....-.... ....++.. +..||+.++.+
T Consensus 70 ~~~~~--~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~--- 137 (391)
T 1l0q_A 70 VPAGS--SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGD--- 137 (391)
T ss_dssp EECSS--SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTT---
T ss_pred EECCC--CccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCC---
Confidence 22222 21222222 34 466665432 468899999887543322211 12222222 33577776544
Q ss_pred cCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 553 YMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 553 ~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
..+.+||+.+.+....-... .....++.. +..||+.++.+ ..+.+||+.+.....
T Consensus 138 --~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 138 --KTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID 194 (391)
T ss_dssp --TEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred --CEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEE
Confidence 37899999888765543322 222333333 34666766543 468999998876544
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.46 E-value=0.068 Score=56.06 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=117.6
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCC--CccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSS--ARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND-- 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~--~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~-- 471 (680)
++.||+..+ ...++.||+.+++ |+.-...+. .+...+.+..++.||+. ... ..+..||+.++
T Consensus 143 ~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~~-----g~l~~~d~~tG~~ 210 (376)
T 3q7m_A 143 DGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GDN-----GRVSAVLMEQGQM 210 (376)
T ss_dssp TTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CTT-----TEEEEEETTTCCE
T ss_pred CCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cCC-----CEEEEEECCCCcE
Confidence 667776443 1369999998875 765533221 12234445568887763 222 35889998866
Q ss_pred cEEECCCCCCCC--------cccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccccceEEEEECCE
Q 005735 472 EWTSRPSLNGTK--------GSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALAAAELNGV 541 (680)
Q Consensus 472 ~W~~l~~lp~~r--------~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r~~~s~~~~~g~ 541 (680)
.|+.-...+... .....+..++.+|+.+. ...+..+|+.+++ |+.-.. . ....+..++.
T Consensus 211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d~~tG~~~w~~~~~--~---~~~~~~~~~~ 279 (376)
T 3q7m_A 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLTALDLRSGQIMWKRELG--S---VNDFIVDGNR 279 (376)
T ss_dssp EEEEECCC-----------CCCCCCEEETTEEEEECT------TSCEEEEETTTCCEEEEECCC--C---EEEEEEETTE
T ss_pred EEEEecccCCCCcccccccccCCCcEEECCEEEEEec------CcEEEEEECCCCcEEeeccCC--C---CCCceEECCE
Confidence 476543222111 22333556888888642 2357899998774 765321 1 2235566899
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc--EEEc
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS--WMSG 617 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~--W~~v 617 (680)
||+.... ..++.||+.+++ |+.-. +. .+...+.+..++.||+... ...+++||+.+.+ |+.
T Consensus 280 l~~~~~~------g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~~~~~- 344 (376)
T 3q7m_A 280 IYLVDQN------DRVMALTIDGGVTLWTQSD-LL-HRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRFVAQQ- 344 (376)
T ss_dssp EEEEETT------CCEEEEETTTCCEEEEECT-TT-TSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEE-
T ss_pred EEEEcCC------CeEEEEECCCCcEEEeecc-cC-CCcccCCEEECCEEEEEeC------CCeEEEEECCCCcEEEEE-
Confidence 9987531 368899998775 66431 11 2222334556888887642 2468999998875 543
Q ss_pred CCCCCCccceEEEEECCEEEEEe
Q 005735 618 EPMKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 618 ~~lp~~R~~~s~v~~~~~lyV~G 640 (680)
.+.........+..++.||+..
T Consensus 345 -~~~~~~~~~~~~~~~~~l~v~~ 366 (376)
T 3q7m_A 345 -KVDSSGFQTEPVAADGKLLIQA 366 (376)
T ss_dssp -ECCTTCBCSCCEEETTEEEEEB
T ss_pred -ecCCCcceeCCEEECCEEEEEe
Confidence 2211222334455688888754
No 31
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0027 Score=74.19 Aligned_cols=246 Identities=13% Similarity=0.156 Sum_probs=134.0
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--C--CEEEEEecCCCCCccceEEEEeC
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--N--GELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~--~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
..+.+++..++.||.++ .+.+||...+++..+..+......-..+.+ + +..++.|+.++ .+.+||.
T Consensus 15 l~~s~dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~ 84 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKE 84 (753)
T ss_dssp ECCCSSSCCEEEEETTT-----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEE
T ss_pred EEECCCCCeEEEEECCC-----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEEC
Confidence 33445677788887653 578888877777766555444333333333 3 67777787653 5888999
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE------
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL------ 538 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~------ 538 (680)
.+++|.....+........++.+ + +.+++.|+.++ .+.+||+.+..-.....+........++.+
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 88887665544433333333333 3 66777777553 577888876632111111110111111111
Q ss_pred ---------CCEEEEEcCCCCCCcCceeEEEeCCCC--cEEEeccCCCCCc-eeEEEEE-C---CEEEEEeccCCCCCCC
Q 005735 539 ---------NGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANMNRRRG-CHSLAVL-N---GKLYALGGFDGSAMVP 602 (680)
Q Consensus 539 ---------~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~p~~r~-~~s~v~~-~---~~IyviGG~~~~~~~~ 602 (680)
++.+++.|+.++ .+.+||..+. .+..+..+..... ..+++.. + +.+++.||.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg----- 229 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR----- 229 (753)
T ss_dssp -------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-----
T ss_pred cccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-----
Confidence 356777777664 4777776554 4454443332222 2233322 4 78888888653
Q ss_pred eEEEEeCCCCc--EEE-cCCCC-CCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC--CCeEecccCCC
Q 005735 603 SIEVYDPRLGS--WMS-GEPMK-LSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINSRAI 669 (680)
Q Consensus 603 ~v~~yD~~t~~--W~~-v~~lp-~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~--~~W~~v~~~p~ 669 (680)
.+.+||+.+.. +.. +.... ......+++.. ++..++.||.++ .+.+|+.. ..|........
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg------~I~vwd~~~~~~~~~~~~~~~ 297 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------KVTLWKENLEGKWEPAGEVHQ 297 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS------CEECCBCCSSSCCBCCCCBC-
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC------EEEEEecCCCCCccccccccc
Confidence 47788877642 111 11111 11112222222 677788887654 37777765 77877765544
No 32
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.43 E-value=0.014 Score=59.36 Aligned_cols=185 Identities=13% Similarity=0.074 Sum_probs=115.5
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
.++...++.||+..|..+ .+.+.++|+.+++-..--+++..-...+.+..+++||+... ..+.+.+||+.+.
T Consensus 46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw-----~~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW-----KNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES-----SSSEEEEEETTTC
T ss_pred ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe-----eCCEEEEEECccC
Confidence 445555899999988654 24689999999986554455544444557778999999854 2367899999987
Q ss_pred cEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe-c--cCCCCCce-eEEEEECCEEEEEec
Q 005735 519 KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI-A--NMNRRRGC-HSLAVLNGKLYALGG 594 (680)
Q Consensus 519 ~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v-~--~~p~~r~~-~s~v~~~~~IyviGG 594 (680)
+-... ++.+-.+.+++.-+++||+.-| .+.++.+|+.+.+-..- . ..+.+... ..+...+++||+--
T Consensus 118 ~~~~t--i~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~- 188 (262)
T 3nol_A 118 RQVRS--FNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV- 188 (262)
T ss_dssp CEEEE--EECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEEEE--EECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE-
Confidence 74322 2222244455555677888654 24799999998654332 2 11111111 12344589988643
Q ss_pred cCCCCCCCeEEEEeCCCCcE---EEcCCCCC--------CccceEEEEE--CCEEEEEecccC
Q 005735 595 FDGSAMVPSIEVYDPRLGSW---MSGEPMKL--------SRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~~W---~~v~~lp~--------~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
+ ..+.|.+.|+++.+- ..++.+.. .-...++|.. ++++||.|-...
T Consensus 189 w----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 189 W----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp T----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred c----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 2 246899999998754 33433321 1122455555 578999997765
No 33
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.40 E-value=0.028 Score=56.44 Aligned_cols=181 Identities=14% Similarity=0.069 Sum_probs=116.6
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
...+. ++.+|...|..+ .+.+.++|+.+++-...-+++......+++..+++||+..... +.+++||+.+.
T Consensus 25 GL~~~-~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----~~v~v~D~~tl 95 (243)
T 3mbr_X 25 GLFYL-RGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----HEGFVYDLATL 95 (243)
T ss_dssp EEEEE-TTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTT
T ss_pred cEEEE-CCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----CEEEEEECCcC
Confidence 33443 689999998754 3468999999998776666666667778888999999986543 57999999887
Q ss_pred cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEc---ccccccc-cceEEEEECCEEEEEcC
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT---RSMLQKR-FALAAAELNGVLYATGG 547 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i---~~~p~~r-~~~s~~~~~g~Lyv~GG 547 (680)
+-.. .++.+..+.+++.-++++|+.-| .+.+..+|+.+.+-... ..-+.+. ....+...+|+||+--
T Consensus 96 ~~~~--ti~~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv- 166 (243)
T 3mbr_X 96 TPRA--RFRYPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV- 166 (243)
T ss_dssp EEEE--EEECSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEEE--EEeCCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE-
Confidence 6433 22223345566655677888754 35688999999764321 2222221 2223445589999642
Q ss_pred CCCCCcCceeEEEeCCCCcEE---EeccCCC---------CCceeEEEEE--CCEEEEEec
Q 005735 548 YDGNEYMNSAERFDPREHYWT---KIANMNR---------RRGCHSLAVL--NGKLYALGG 594 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~---~v~~~p~---------~r~~~s~v~~--~~~IyviGG 594 (680)
+ ..+.|.+.|+.+++-. .++.+.. .-...+++.. +++|||.|-
T Consensus 167 w----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 W----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp T----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred C----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2 2358999999998743 3333311 1122444544 578888875
No 34
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.37 E-value=0.14 Score=51.03 Aligned_cols=235 Identities=6% Similarity=0.049 Sum_probs=124.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC---C-CccceEEEEE--CCEEEEEecCCCCCccceEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS---S-ARSYASAAML--NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp---~-~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~ 464 (680)
....+.+++.+|+.+..+ ..+.+||+.......++... . ......+++. ++.|||.+... ...+.
T Consensus 33 ~~v~~~~~g~l~v~~~~~-----~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~ 103 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNN-----HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQ 103 (286)
T ss_dssp EEEEECTTCCEEEEEGGG-----TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEE
T ss_pred ceEEECCCCCEEEEECCC-----CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEE
Confidence 455666778888876432 45889998866555543211 1 1233455553 68999987421 24688
Q ss_pred EEeCCCCcEEECCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCE
Q 005735 465 SYSPANDEWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGV 541 (680)
Q Consensus 465 vyD~~t~~W~~l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~ 541 (680)
+||........+..... ..-.+.++ -++++|+.... ...+.+||+.......+..... ...+....+ ++.
T Consensus 104 ~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~-~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKH-LEFPNGVVVNDKQE 176 (286)
T ss_dssp EECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTT-CSSEEEEEECSSSE
T ss_pred EECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCc-cCCcEEEEECCCCC
Confidence 99965444333322111 11122222 26789887542 2468889977654443321111 112223333 578
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM 620 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~l 620 (680)
+|+....+ ..+.+||+.......+..-........++.- ++.||+.+..++ ..|.+||+....-..+..-
T Consensus 177 l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~ 247 (286)
T 1q7f_A 177 IFISDNRA-----HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALESK 247 (286)
T ss_dssp EEEEEGGG-----TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEES
T ss_pred EEEEECCC-----CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEccc
Confidence 99875432 4789999866554444321111122333332 678888764321 2689999876544443221
Q ss_pred CCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcC
Q 005735 621 KLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 621 p~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.......+++.- ++++|+.. .+ ..+.+|+.
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs~-~~------~~v~v~~~ 278 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLAS-KD------YRLYIYRY 278 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEEE-TT------TEEEEEEC
T ss_pred CCCCcceeEEECCCCcEEEEC-CC------CeEEEEEc
Confidence 111112334433 68888884 22 35666654
No 35
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.36 E-value=0.006 Score=64.02 Aligned_cols=229 Identities=16% Similarity=0.180 Sum_probs=120.0
Q ss_pred ceEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 391 DELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 391 ~~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
.+..+.+++ .||+.|+.+ ..+.++|..+++....-.... ...+++.. +..||+.|..+ ..+.+||
T Consensus 35 ~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~-----~~v~v~d 102 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMAS-----STLSVID 102 (391)
T ss_dssp EEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred ceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence 345566555 466666543 468999998887654322222 22333333 44576665433 4689999
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLY 543 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Ly 543 (680)
..+++....-.. ...-.+.+.. ++ .+|+.++.+ ..+.+||+.+++....-.... ....++.. +..||
T Consensus 103 ~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 103 TTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVY 173 (391)
T ss_dssp TTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEEE
Confidence 998865433221 1112223332 44 476776543 468899999887644322211 11222222 34677
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
+.++.+ ..+.+||+.+.+....-.. ......++.. ++ .|++.+. +. ....+.+||+.+..-... ++
T Consensus 174 ~~~~~~-----~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~-~~--~~~~v~~~d~~~~~~~~~--~~ 241 (391)
T 1l0q_A 174 VANFDS-----MSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNV-DK--YFNTVSMIDTGTNKITAR--IP 241 (391)
T ss_dssp EEETTT-----TEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEE-CS--SCCEEEEEETTTTEEEEE--EE
T ss_pred EEeCCC-----CEEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEec-Cc--CCCcEEEEECCCCeEEEE--Ee
Confidence 776544 3689999988765444322 2222233332 44 4555442 11 135789999987654322 22
Q ss_pred CCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 622 LSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 622 ~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
......+++.. +..||+.++.+ ..+.+|+..
T Consensus 242 ~~~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~ 274 (391)
T 1l0q_A 242 VGPDPAGIAVTPDGKKVYVALSFX------NTVSVIDTA 274 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTT------TEEEEEETT
T ss_pred cCCCccEEEEccCCCEEEEEcCCC------CEEEEEECC
Confidence 22222233333 33566666543 246777754
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.35 E-value=0.0034 Score=65.62 Aligned_cols=247 Identities=17% Similarity=0.184 Sum_probs=119.9
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
..+..+.+++.+++.|+.++ .+.+||..++.|..+..+.........+.+ ++.+++.|+.++ .+.+||
T Consensus 14 v~~~~~s~~g~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~vwd 83 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATN-----QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYVYE 83 (377)
T ss_dssp CSCCEECSSSSEEECCCSSS-----CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEEC-
T ss_pred EEEEEECCCCCEEEEecCCC-----EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEEEE
Confidence 34556666788888887643 467788888888877766554443333333 567777777653 578888
Q ss_pred CCCCc-EEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc-EEEcccccc-cccceEEEEE--CC
Q 005735 468 PANDE-WTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK-WIRTRSMLQ-KRFALAAAEL--NG 540 (680)
Q Consensus 468 ~~t~~-W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~i~~~p~-~r~~~s~~~~--~g 540 (680)
..+.. |.....+........++.+ ++++++.|+.++ .+.+||+.+.+ |.....+.. .......+.+ ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-----VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-----CEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-----eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 88765 4332222221222222222 566666666543 46678887764 433332222 1112222223 56
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCc----------------EEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCe
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHY----------------WTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPS 603 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~----------------W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~ 603 (680)
.+++.|+.++ .+.+||..+.. -..+..+.......+++.. ++++++.|+.+ ..
T Consensus 159 ~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~ 228 (377)
T 3dwl_C 159 VLLAAGCADR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD-----SS 228 (377)
T ss_dssp SEEEEEESSS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT-----TE
T ss_pred CEEEEEeCCC-----EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC-----Cc
Confidence 6777777664 57778875332 2222222222222222222 56677777754 35
Q ss_pred EEEEeCCCCcE--EEcCCCCCCccc-eEEEE-ECCEEEEEecccCCCcccceEEEEcCC-CCeEecccCC
Q 005735 604 IEVYDPRLGSW--MSGEPMKLSRGY-LGAAV-VKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRA 668 (680)
Q Consensus 604 v~~yD~~t~~W--~~v~~lp~~R~~-~s~v~-~~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~~p 668 (680)
+.+||..+..- ..+..+...... .+++. -++++++.|+.+ .+.+|+.. ..|.....+.
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY-------SPILLQGNESGWAHTRDLD 291 (377)
T ss_dssp EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS-------SEEEECCCC---CCSBCCC
T ss_pred EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC-------cEEEEEeCCCceEEEeeec
Confidence 67788766532 223222222222 22222 277777766422 24466655 6676655544
No 37
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.33 E-value=0.13 Score=51.15 Aligned_cols=231 Identities=9% Similarity=0.018 Sum_probs=123.6
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.....+.+++.||+....+ ..+.+||+. +.+............++++.. ++.+|+..... ..+.+||+
T Consensus 17 ~~~i~~d~~g~l~v~~~~~-----~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~ 85 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKA-----NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRITK 85 (299)
T ss_dssp EEEEEECTTSCEEEEETTT-----TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred ccceEECCCCCEEEEecCC-----CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEECC
Confidence 3456667788888865321 358999998 777655422122233344443 67888875432 35888988
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYAT 545 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~ 545 (680)
. ++++... ++..........+ ++++|+.... ...+.+||+ +++...............++.. ++++|+.
T Consensus 86 ~-g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 86 K-GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp T-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred C-CcEEEEe-CCCcCCCceeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 6 4454432 2211122222333 5788887532 246788998 6665543211111222233333 5788886
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCC-
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLS- 623 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~- 623 (680)
... ...+++||+ +++...+...........++.. ++.||+.... ...+.+||+ +..+..+. .+..
T Consensus 158 ~~~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~ 224 (299)
T 2z2n_A 158 ENQ-----NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFK-IPTPN 224 (299)
T ss_dssp ETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTT
T ss_pred eCC-----CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEE-CCCCC
Confidence 432 246899999 7777665211111222333333 5678876532 246899999 77766542 1211
Q ss_pred ccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC
Q 005735 624 RGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 624 R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
....+++.- ++.||+..... ..+.+|++.
T Consensus 225 ~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~~ 254 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEWGA------NKIGRLTSN 254 (299)
T ss_dssp CCEEEEEECSTTCEEEEETTT------TEEEEEETT
T ss_pred CCceeEEECCCCCEEEeccCC------ceEEEECCC
Confidence 222333333 56787764221 246677664
No 38
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.33 E-value=0.025 Score=57.41 Aligned_cols=244 Identities=12% Similarity=0.154 Sum_probs=119.4
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE----CCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML----NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~----~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
+..+.+++..++.|+.++ .+.+||......+.+..+......-..+.+ ++.+++.|+.+ ..+.++|
T Consensus 14 ~~~~s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v~iWd 83 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVMIWK 83 (297)
T ss_dssp EEEECTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEEEEEE
T ss_pred EEEECCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEEEEEE
Confidence 455667788888888653 467777765432222222222222222222 25677777765 3688899
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCcc-EEEcccccccccceEEEEE----
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGK-WIRTRSMLQKRFALAAAEL---- 538 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~i~~~p~~r~~~s~~~~---- 538 (680)
..+++|..+..+........++.+ + +.+++.|+.+ ..+.+||+.+.. +.... +.........+.+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~~~~~~-~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPAT 157 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSCBCCEE-EECCSSCEEEEEECCCC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCceeeee-eecccCccceEeecCCc
Confidence 888776544322211122222333 2 5566666654 346677776542 21000 0000000011111
Q ss_pred -----------CCEEEEEcCCCCCCcCceeEEEeCCCC--cEEEeccCCC-CCceeEEEEE-C---CEEEEEeccCCCCC
Q 005735 539 -----------NGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANMNR-RRGCHSLAVL-N---GKLYALGGFDGSAM 600 (680)
Q Consensus 539 -----------~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~p~-~r~~~s~v~~-~---~~IyviGG~~~~~~ 600 (680)
++++++.|+.++ .+.+||..+. .|..+..+.. .....+++.. + +.+++.|+.++
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~--- 229 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR--- 229 (297)
T ss_dssp ------------CCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS---
T ss_pred ccccccCCCCCCcceEEEEcCCC-----cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC---
Confidence 245777777664 4666776543 3655544432 2222233322 2 36777777653
Q ss_pred CCeEEEEeCCC--CcEEE--cCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC--CCeEecccC
Q 005735 601 VPSIEVYDPRL--GSWMS--GEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINSR 667 (680)
Q Consensus 601 ~~~v~~yD~~t--~~W~~--v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~--~~W~~v~~~ 667 (680)
.+.++|+.+ ..|.. +..........+++.. ++++++.||.++ .+.+|+.. +.|..+..+
T Consensus 230 --~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~------~v~lw~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 230 --TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------KVTLWKENLEGKWEPAGEV 295 (297)
T ss_dssp --CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS------CEEEEEECTTSCEEEC---
T ss_pred --cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC------cEEEEEECCCCcEEecccc
Confidence 467777655 33543 2111111112222222 677888887654 36667654 789877654
No 39
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.32 E-value=0.16 Score=50.46 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=125.4
Q ss_pred ccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEe
Q 005735 389 SSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
......+..++.||+.... ...+.+||+. +.+............++++.. ++.||+..... ..+.+||
T Consensus 21 ~p~~i~~d~~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d 89 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLS 89 (300)
T ss_dssp CEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred CcceeeECCCCCEEEEcCC-----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC-----CeEEEEC
Confidence 3345666778889887642 2458899988 666654321111223344433 57888875422 3588999
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEccccccc-ccceEEEEE-CCEEE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK-RFALAAAEL-NGVLY 543 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~-r~~~s~~~~-~g~Ly 543 (680)
+. +++..... +..........+ ++++|+.... ...+..||+. ++..... ++.. .....++.. +++||
T Consensus 90 ~~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 90 KK-GGFTEYPL-PQPDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp TT-SCEEEEEC-SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEE
T ss_pred CC-CCeEEecC-CCCCCCCccceECCCCCEEEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEE
Confidence 88 66654422 211122223333 6788887532 2467889988 6655432 2211 122223322 57788
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCC
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL 622 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~ 622 (680)
+....+ ..+++||+ +++...+...........++.. ++.||+.... ...+.+||+ +..+........
T Consensus 161 v~~~~~-----~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~ 228 (300)
T 2qc5_A 161 FTENQN-----NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDIPTP 228 (300)
T ss_dssp EEETTT-----TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSST
T ss_pred EEecCC-----CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEECCCC
Confidence 864322 36899998 6666655321111222333332 5678876532 246899998 556655421111
Q ss_pred CccceEEEEE-CCEEEEEecccCCCcccceEEEEcCCCCeE
Q 005735 623 SRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEGQGWE 662 (680)
Q Consensus 623 ~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~~~W~ 662 (680)
.....+++.- +++||+..... ..+..|++..+..
T Consensus 229 ~~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~~g~~~ 263 (300)
T 2qc5_A 229 NARPHAITAGKNSEIWFTEWGA------NQIGRITNDNTIQ 263 (300)
T ss_dssp TCCEEEEEECSTTCEEEEETTT------TEEEEECTTSCEE
T ss_pred CCCceEEEECCCCCEEEeccCC------CeEEEECCCCcEE
Confidence 1222333333 56788775321 3466777654443
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.27 E-value=0.029 Score=57.96 Aligned_cols=226 Identities=12% Similarity=0.141 Sum_probs=115.9
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
..+.+++.+++.|+.+ ..+.++|..+++....-.............-++..++.|+.+ ..+.+||..+.+
T Consensus 86 ~~~~~~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~ 155 (321)
T 3ow8_A 86 VDISHTLPIAASSSLD-----AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGK 155 (321)
T ss_dssp EEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCS
T ss_pred EEECCCCCEEEEEeCC-----CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCc
Confidence 3444566677777765 357888988775432211111111111112256677777654 357888887664
Q ss_pred EEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCC
Q 005735 473 WTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGY 548 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~ 548 (680)
-... +........++.+ +++.++.|+.++ .+.+||+.+++-... +.........+.+ ++.+++.|+.
T Consensus 156 ~~~~--~~~~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 156 KEYS--LDTRGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp EEEE--EECSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECT
T ss_pred eeEE--ecCCCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcC
Confidence 3221 1111111122222 677777777553 477899988763221 1111111112222 6777888876
Q ss_pred CCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccce
Q 005735 549 DGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYL 627 (680)
Q Consensus 549 ~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~ 627 (680)
++ .+.+||..+......-. ........++.. ++..++.|+.++ .+.+||+.+..-... +.......
T Consensus 227 dg-----~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~--~~~h~~~v 293 (321)
T 3ow8_A 227 DG-----YIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDK-----SVKVWDVGTRTCVHT--FFDHQDQV 293 (321)
T ss_dssp TS-----CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCE
T ss_pred CC-----eEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCEEEEE--EcCCCCcE
Confidence 64 58889988765433211 111112222222 566777777653 588999877653321 11112222
Q ss_pred EEEEE--CCEEEEEecccCCCcccceEEEEc
Q 005735 628 GAAVV--KEAIYVIGGVKNGSEIVDTVERFK 656 (680)
Q Consensus 628 s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~ 656 (680)
..+.+ ++..++.||.++ .+.+|+
T Consensus 294 ~~v~~s~~g~~l~s~~~d~------~i~vwd 318 (321)
T 3ow8_A 294 WGVKYNGNGSKIVSVGDDQ------EIHIYD 318 (321)
T ss_dssp EEEEECTTSSEEEEEETTC------CEEEEE
T ss_pred EEEEECCCCCEEEEEeCCC------eEEEEe
Confidence 22333 566777777654 366665
No 41
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.24 E-value=0.18 Score=49.96 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=120.8
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
....+..++.+|+..... ..+++||+. +.+............++++.. ++.||+..... ..+.+||+
T Consensus 60 ~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~- 127 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAA-----NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD- 127 (299)
T ss_dssp EEEEECTTSCEEEEETTT-----TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT-
T ss_pred eeEEECCCCCEEEeCCCC-----CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEECC-
Confidence 445566678888875432 358889986 455444321122233444444 57888875432 36889998
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccce-EEEEE-CCEEEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFAL-AAAEL-NGVLYAT 545 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~-s~~~~-~g~Lyv~ 545 (680)
+++...... +..........+ ++++|+.... ...+.+||+ +++..... .+...... .++.. ++.||+.
T Consensus 128 ~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~ 199 (299)
T 2z2n_A 128 DGKIREYEL-PNKGSYPSFITLGSDNALWFTENQ-----NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFV 199 (299)
T ss_dssp TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEE
T ss_pred CCCEEEecC-CCCCCCCceEEEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEE
Confidence 665554321 111112222223 5788886421 246889999 77766542 11111122 23332 5778886
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCc
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSR 624 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R 624 (680)
... ...+.+||+ ++.+..+..........+++.. ++.||+.... ...+.+||+ +.....+.......
T Consensus 200 ~~~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~ 267 (299)
T 2z2n_A 200 EII-----GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQIKSA 267 (299)
T ss_dssp ETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEECSSSSC
T ss_pred ccC-----CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeCCCCCC
Confidence 532 246899999 7777665321111222333333 5678876522 256899998 44544432111112
Q ss_pred cceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 625 GYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 625 ~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
...+++.-++.||+... . +.+..|++.
T Consensus 268 ~~~~i~~~~g~l~v~~~-~------~~l~~~~~~ 294 (299)
T 2z2n_A 268 EPHGICFDGETIWFAME-C------DKIGKLTLI 294 (299)
T ss_dssp CEEEEEECSSCEEEEET-T------TEEEEEEEC
T ss_pred ccceEEecCCCEEEEec-C------CcEEEEEcC
Confidence 23344445677777653 1 236666654
No 42
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.23 E-value=0.023 Score=61.12 Aligned_cols=220 Identities=13% Similarity=0.181 Sum_probs=117.1
Q ss_pred EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCC
Q 005735 400 SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL 479 (680)
Q Consensus 400 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~l 479 (680)
.+++.|+.+ ..+.+||..++..... +............++..++.|+.+ ..+.+||..+.+-... +
T Consensus 170 ~~l~s~~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~ 235 (445)
T 2ovr_B 170 NIIISGSTD-----RTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRD-----ATLRVWDIETGQCLHV--L 235 (445)
T ss_dssp TEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETT-----SEEEEEESSSCCEEEE--E
T ss_pred CEEEEEeCC-----CeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeCC-----CEEEEEECCCCcEEEE--E
Confidence 345555543 3578888887754322 111222222333345556667655 3688899887653221 1
Q ss_pred CCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEE
Q 005735 480 NGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAER 559 (680)
Q Consensus 480 p~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~ 559 (680)
........++..++..++.|+.++ .+.+||+.+.+-.. .+........++.+++..++.|+.++ .+.+
T Consensus 236 ~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~i 303 (445)
T 2ovr_B 236 MGHVAAVRCVQYDGRRVVSGAYDF-----MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT-----SIRV 303 (445)
T ss_dssp ECCSSCEEEEEECSSCEEEEETTS-----CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS-----CEEE
T ss_pred cCCcccEEEEEECCCEEEEEcCCC-----EEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCCC-----eEEE
Confidence 111222334445777777777553 46788887765322 12211122233444777778887664 6889
Q ss_pred EeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEE-cCCCCCCccceEEEEECCEEEE
Q 005735 560 FDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-GEPMKLSRGYLGAAVVKEAIYV 638 (680)
Q Consensus 560 yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~-v~~lp~~R~~~s~v~~~~~lyV 638 (680)
||..+.+-... +............++..++.|+.+ ..+.+||+.+..-.. +............+..++.+++
T Consensus 304 ~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 376 (445)
T 2ovr_B 304 WDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 376 (445)
T ss_dssp EETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEE
T ss_pred EECCCCCEEEE--EcCCcccEEEEEEeCCEEEEEeCC-----CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEE
Confidence 99887654322 111111222333445566667654 358899987765332 2221112233344455777788
Q ss_pred EecccCCCcccceEEEEcCC
Q 005735 639 IGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 639 ~GG~~~~~~~~~~ve~y~~~ 658 (680)
.||.++ .+.+|+..
T Consensus 377 s~~~dg------~v~iwd~~ 390 (445)
T 2ovr_B 377 TSSDDG------TVKLWDLK 390 (445)
T ss_dssp EEETTS------EEEEEETT
T ss_pred EEeCCC------eEEEEECC
Confidence 887654 46777755
No 43
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=97.23 E-value=0.009 Score=61.52 Aligned_cols=247 Identities=14% Similarity=0.195 Sum_probs=124.1
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE----CCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML----NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~----~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
+..+.+++..++.|+.++ .+.+||..++....+..+......-..+.+ ++.+++.|+.+ ..+.++|
T Consensus 18 ~v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iWd 87 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RKVIIWR 87 (316)
T ss_dssp EEEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SCEEEEC
T ss_pred EeeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CEEEEEE
Confidence 445556777888888653 577788776654333222222222222233 25677777765 3588899
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCc-cEEEcccccccccceEEEEE----
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIG-KWIRTRSMLQKRFALAAAEL---- 538 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i~~~p~~r~~~s~~~~---- 538 (680)
..+.+|.....+......-.++.+ + +.+++.|+.++ .+.+||..+. .|.....+.........+.+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 888766443222211111122222 2 56777776553 4567777665 46543221110000000111
Q ss_pred ---------------CCEEEEEcCCCCCCcCceeEEEeCCC-CcEEEeccCCCCCc-eeEEEEE-C----CEEEEEeccC
Q 005735 539 ---------------NGVLYATGGYDGNEYMNSAERFDPRE-HYWTKIANMNRRRG-CHSLAVL-N----GKLYALGGFD 596 (680)
Q Consensus 539 ---------------~g~Lyv~GG~~~~~~~~~v~~yD~~t-~~W~~v~~~p~~r~-~~s~v~~-~----~~IyviGG~~ 596 (680)
.+++++.|+.++ .+.+||..+ ..|..+..+..... ..+++.. + +.+++.|+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDN-----LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTS-----BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred CCccccccccccCccccceEEEecCCC-----eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 134667776654 466777653 45776654432221 2222221 2 2567777765
Q ss_pred CCCCCCeEEEEeCCC---CcEEE--cCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC--CCeEecccCC
Q 005735 597 GSAMVPSIEVYDPRL---GSWMS--GEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINSRA 668 (680)
Q Consensus 597 ~~~~~~~v~~yD~~t---~~W~~--v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~--~~W~~v~~~p 668 (680)
..+.+||..+ ..|.. +... .....+++.. ++.+++.||.++ .+.+|+.. ..|..+..+.
T Consensus 238 -----~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~------~v~lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 238 -----GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDN------KVTLWKESVDGQWVCISDVN 304 (316)
T ss_dssp -----CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSS------CEEEEEECTTSCEEEEEECC
T ss_pred -----CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCC------eEEEEEECCCCcEEEeeecc
Confidence 3577888765 23321 1111 1111222222 577888887654 36777754 7899888777
Q ss_pred CCC
Q 005735 669 IGK 671 (680)
Q Consensus 669 ~~~ 671 (680)
.+.
T Consensus 305 ~~~ 307 (316)
T 3bg1_A 305 KGQ 307 (316)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.22 E-value=0.071 Score=53.97 Aligned_cols=192 Identities=13% Similarity=0.185 Sum_probs=101.9
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+....+++.+++.|+.+ ..+.+||..++..... +......-..+.+ ++.+++.|+.++ .+.+||..
T Consensus 70 ~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~ 137 (312)
T 4ery_A 70 DVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVK 137 (312)
T ss_dssp EEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETT
T ss_pred EEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECC
Confidence 45556677788888765 3578888887653322 1111111122222 556777777653 58889988
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
+.+-... ++.......+..+ ++++++.|+.++ .+.+||+.+++-...-..... .....+.+ ++..++.
T Consensus 138 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 138 TGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILA 209 (312)
T ss_dssp TCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCSSC-CCEEEEEECTTSSEEEE
T ss_pred CCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeEEeccCC-CceEEEEECCCCCEEEE
Confidence 7653221 1111112222223 566777777553 477899887764322111111 11112222 5666677
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEe-ccCCCCCcee-EEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKI-ANMNRRRGCH-SLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v-~~~p~~r~~~-s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
|+.++ .+.+||..+..-... .......... .... .++.+++.|+.++ .+.+||+.+..
T Consensus 210 ~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~ 270 (312)
T 4ery_A 210 ATLDN-----TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN-----LVYIWNLQTKE 270 (312)
T ss_dssp EETTT-----EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS-----CEEEEETTTCC
T ss_pred EcCCC-----eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC-----EEEEEECCCch
Confidence 76553 688999887754332 1111111211 2222 2566777777553 48899988764
No 45
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.21 E-value=0.047 Score=53.85 Aligned_cols=233 Identities=13% Similarity=0.042 Sum_probs=120.2
Q ss_pred ccceEEEcCCCEEEE-EecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEE
Q 005735 389 SSDELHLDPSESIYL-VGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv-~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vy 466 (680)
......+.+++.+|+ .... ...+.+||+.+.......... ....++++.. ++.|||... . ..+.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDF-N-----NRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSS-----SCEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEET-T-----TEEEEE
T ss_pred CccceEECCCCCEEEEccCC-----CCcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcC-C-----CEEEEE
Confidence 334566667788888 4332 245888998776655443211 1223344443 567888765 2 368999
Q ss_pred eCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEE
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYA 544 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv 544 (680)
|+.+........... ..-.+.+.- ++++|+.... ...+.+||..+.......... ......++.. ++++|+
T Consensus 93 d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v 165 (270)
T 1rwi_B 93 AAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYV 165 (270)
T ss_dssp CTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEE
T ss_pred eCCCceEeeeecCCc-CCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEE
Confidence 988776544422111 111222332 6789887432 245778877666544332111 1111223333 578888
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLS 623 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~ 623 (680)
....+ ..+.+||+....-........ .....++.. ++.||+.... ...+.+||+....-..... ...
T Consensus 166 ~~~~~-----~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~-----~~~v~~~~~~~~~~~~~~~-~~~ 233 (270)
T 1rwi_B 166 TDTDN-----NRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHN-----TNQVVKLLAGSTTSTVLPF-TGL 233 (270)
T ss_dssp EEGGG-----TEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETT-----TSCEEEECTTCSCCEECCC-CSC
T ss_pred EECCC-----CEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECC-----CCcEEEEcCCCCcceeecc-CCC
Confidence 75432 378999988765443321111 222333333 4578887542 2458899987654333221 111
Q ss_pred ccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC
Q 005735 624 RGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 624 R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
....+++.- +++||+....++ .|.+|+..
T Consensus 234 ~~p~~i~~~~~g~l~v~~~~~~------~v~~~~~~ 263 (270)
T 1rwi_B 234 NTPLAVAVDSDRTVYVADRGND------RVVKLTSL 263 (270)
T ss_dssp SCEEEEEECTTCCEEEEEGGGT------EEEEECCC
T ss_pred CCceeEEECCCCCEEEEECCCC------EEEEEcCC
Confidence 222334333 567888865433 57777653
No 46
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.21 E-value=0.063 Score=55.61 Aligned_cols=230 Identities=18% Similarity=0.253 Sum_probs=115.5
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++.+++.|+.++ .+.++|..+..-...-+. .......+.+ ++..++.||.+ ..+.+||.
T Consensus 59 ~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~ 126 (340)
T 1got_B 59 YAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLD-----NICSIYNL 126 (340)
T ss_dssp EEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEEC--SSSCEEEEEECTTSSEEEEEETT-----CEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeec--CCccEEEEEECCCCCEEEEEeCC-----CeEEEEEC
Confidence 3455666788888888653 578888877653322111 1111122222 56677777765 35788887
Q ss_pred CCCc--EEECCCCCCCCcccE-EEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEE
Q 005735 469 ANDE--WTSRPSLNGTKGSLA-GAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVL 542 (680)
Q Consensus 469 ~t~~--W~~l~~lp~~r~~~a-~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~L 542 (680)
.+.. ......+........ +.. -+++ ++.|+.+ ..+.+||+.+++-... +........++.+ ++.+
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCE
Confidence 6642 111111111111111 222 2555 4445443 3477899888764322 1111111112222 5677
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
++.|+.++ .+.+||..+..-...-. .......+++.. ++.+++.|+.++ .+.+||+.+..-...-..+
T Consensus 199 l~sg~~d~-----~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 199 FVSGACDA-----SAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EEEEETTS-----CEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCT
T ss_pred EEEEeCCC-----cEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEccC
Confidence 88887664 67889988765432211 111112222322 567777787653 4789998876533221111
Q ss_pred CCccceEEEEE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 622 LSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 622 ~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
........+.+ ++++++.|+.++ .+.+|+.
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~------~i~vwd~ 299 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDF------NCNVWDA 299 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTS------EEEEEET
T ss_pred CcccceEEEEECCCCCEEEEECCCC------eEEEEEc
Confidence 11112222223 567777776543 3666664
No 47
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.17 E-value=0.092 Score=53.21 Aligned_cols=249 Identities=11% Similarity=0.093 Sum_probs=121.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCC--CCeEEEcCCCCCCccceEEEEE-C-CEEEEEecCCCCCccceEEEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPS--CDVIKTLKPMSSARSYASAAML-N-GELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~--t~~W~~l~~mp~~R~~~s~v~~-~-~~IyV~GG~~~~~~~~~v~vy 466 (680)
....+.+++..+++++..+ ..+.+|+.. ++++..+..++.......++.. + ..||+.+... ..+.+|
T Consensus 41 ~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~ 111 (343)
T 1ri6_A 41 QPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA-----GNVSVT 111 (343)
T ss_dssp CCEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT-----TEEEEE
T ss_pred ceEEECCCCCEEEEeecCC----CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC-----CeEEEE
Confidence 4466666666444554432 346666655 7777766443322233333333 3 4566655422 357777
Q ss_pred eCCCC-cEEECCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCC-ccEEEcc--c--ccccccceEEEEE
Q 005735 467 SPAND-EWTSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDI-GKWIRTR--S--MLQKRFALAAAEL 538 (680)
Q Consensus 467 D~~t~-~W~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t-~~W~~i~--~--~p~~r~~~s~~~~ 538 (680)
|.... +......++....-.+.+.. ++ .+|+.+.. ...+.+||+.+ ++...+. . .+.. .....+.+
T Consensus 112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-----QDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVF 185 (343)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEE
T ss_pred ECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-----CCEEEEEEecCCCceeeecccccccCCC-CCcceEEE
Confidence 77322 12222222211122222232 44 57776422 24588999987 6665432 1 1111 12222333
Q ss_pred --CC-EEEEEcCCCCCCcCceeEEEeCC--CCcEEE---eccCCCC----CceeEEEEE-CC-EEEEEeccCCCCCCCeE
Q 005735 539 --NG-VLYATGGYDGNEYMNSAERFDPR--EHYWTK---IANMNRR----RGCHSLAVL-NG-KLYALGGFDGSAMVPSI 604 (680)
Q Consensus 539 --~g-~Lyv~GG~~~~~~~~~v~~yD~~--t~~W~~---v~~~p~~----r~~~s~v~~-~~-~IyviGG~~~~~~~~~v 604 (680)
++ .+|+.+..+ ..+.+||.. ++.+.. +..++.. .....++.. ++ .||+.+.. -..+
T Consensus 186 ~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i 255 (343)
T 1ri6_A 186 HPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLI 255 (343)
T ss_dssp CTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEE
T ss_pred CCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEE
Confidence 34 477765433 367888874 444433 2333322 111223332 34 56665532 2467
Q ss_pred EEEeCC--CCcEEEcCCCCCCccceEEEEE-CCE-EEEEecccCCCcccceEEEE--cCC-CCeEecccCCCC
Q 005735 605 EVYDPR--LGSWMSGEPMKLSRGYLGAAVV-KEA-IYVIGGVKNGSEIVDTVERF--KEG-QGWEEINSRAIG 670 (680)
Q Consensus 605 ~~yD~~--t~~W~~v~~lp~~R~~~s~v~~-~~~-lyV~GG~~~~~~~~~~ve~y--~~~-~~W~~v~~~p~~ 670 (680)
.+||+. +.++..+..++.......++.. +++ ||+.++.+ ..+.+| ++. ..++.+...+++
T Consensus 256 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~v~~~d~~~g~~~~~~~~~~g 322 (343)
T 1ri6_A 256 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS------HHISVYEIVGEQGLLHEKGRYAVG 322 (343)
T ss_dssp EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT------CEEEEEEEETTTTEEEEEEEEECS
T ss_pred EEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC------CeEEEEEEcCCCceeeEccccccC
Confidence 888887 5567766544433332233333 444 55544322 235555 665 678888777776
No 48
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.16 E-value=0.071 Score=54.24 Aligned_cols=230 Identities=11% Similarity=0.160 Sum_probs=113.8
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.+..+.+++.+++.|+.++ .+.++|..++.....-...... -.++... ++.+++.|+.+ ..+.+||..
T Consensus 17 ~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~ 85 (304)
T 2ynn_A 17 KGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDD-----FRIRVFNYN 85 (304)
T ss_dssp EEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC-EEEEEEEGGGTEEEEEETT-----SEEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeeccCCc-EEEEEEeCCCCEEEEECCC-----CEEEEEECC
Confidence 4566777888888888653 5788898877543221111111 1122222 56667777765 368889988
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE---CCEEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL---NGVLYA 544 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~---~g~Lyv 544 (680)
+++-... +..-...-.++.+ ++.+++.|+.++ .+.+||..++. .....+........++.+ ++.+++
T Consensus 86 ~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 86 TGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp TCCEEEE--EECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred CCcEEEE--EeCCCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEE
Confidence 7653211 1111111112222 566777776553 46678876542 111111111111122233 456777
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE---CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL---NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~---~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
.|+.++ .+.+||..+..-...-.....+....+... ++.+++.|+.+ ..|.+||..+..-.. .+.
T Consensus 158 sgs~D~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~--~~~ 225 (304)
T 2ynn_A 158 SGCLDR-----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVA--TLE 225 (304)
T ss_dssp EEETTS-----EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEE--EEE
T ss_pred EEeCCC-----eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccce--eeC
Confidence 887764 678888765431111111111111122221 45566777654 358899988764322 121
Q ss_pred CCccceEEEEE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 622 LSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 622 ~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
........+.+ ++.+++.|+.++. +.+|+.
T Consensus 226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~------i~iWd~ 257 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIIISGSEDGT------LKIWNS 257 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSC------EEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCCe------EEEEEC
Confidence 11122222333 5567777776542 555554
No 49
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.15 E-value=0.059 Score=54.65 Aligned_cols=182 Identities=13% Similarity=0.047 Sum_probs=113.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
....+. ++.+|+..|..+ .+.+.++|+.+++-..--+++......+++..+++||+..... +.+++||+.+
T Consensus 46 qGL~~~-~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v~D~~t 116 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVWNIRN 116 (262)
T ss_dssp EEEEEE-TTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTT
T ss_pred ceEEEE-CCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEEEECcc
Confidence 344444 789999998654 3468899999998665545555455566788899999996543 5799999998
Q ss_pred CcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEc-c--cccccccc-eEEEEECCEEEEEc
Q 005735 471 DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT-R--SMLQKRFA-LAAAELNGVLYATG 546 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~--~~p~~r~~-~s~~~~~g~Lyv~G 546 (680)
.+-..- ++.+..+.+.+.-++.+|+.-| .+.+..+|+.+.+-... . .-+.+... ..+...+|+||+--
T Consensus 117 ~~~~~t--i~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~ 188 (262)
T 3nol_A 117 LRQVRS--FNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV 188 (262)
T ss_dssp CCEEEE--EECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred CcEEEE--EECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE
Confidence 765322 2222244455555666888644 35689999998764322 1 11122111 12344589999642
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEe---ccCCC--------CCceeEEEEE--CCEEEEEec
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKI---ANMNR--------RRGCHSLAVL--NGKLYALGG 594 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v---~~~p~--------~r~~~s~v~~--~~~IyviGG 594 (680)
+ ..+.|.+.|+.+++-... +.+.. .-...++|.. ++++||.|-
T Consensus 189 -w----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 189 -W----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -T----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -c----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 2 235899999999875443 32211 1122445554 567888875
No 50
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.13 E-value=0.052 Score=54.66 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=99.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC--eEEEcCCCCCCccceEEEEE----CCEEEEEecCCCCCccceEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD--VIKTLKPMSSARSYASAAML----NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~mp~~R~~~s~v~~----~~~IyV~GG~~~~~~~~~v~ 464 (680)
.+..+.+++.+++.|+.++ .+.+||..++ .++.+..+......-..+.+ ++.+++.|+.++ .+.
T Consensus 15 ~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~ 84 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK-----TVK 84 (351)
T ss_dssp EEEEECSSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS-----CEE
T ss_pred eEEEEcCCCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC-----eEE
Confidence 4556666788888887653 4666766643 34443333222222223333 367777787653 477
Q ss_pred EEeCCCC-------cEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCcc----EEEcc-----
Q 005735 465 SYSPAND-------EWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGK----WIRTR----- 524 (680)
Q Consensus 465 vyD~~t~-------~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~----W~~i~----- 524 (680)
+||..+. .|+.+..+........++.+ + +.+++.|+.+ ..+.+||+.+.+ |....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhcccccccccccc
Confidence 7777654 33333222222222223333 3 6677777654 357788887654 32111
Q ss_pred cc-cc-cccceEEEEE-----CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCc-eeEEEEE-CC----EEEE
Q 005735 525 SM-LQ-KRFALAAAEL-----NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRG-CHSLAVL-NG----KLYA 591 (680)
Q Consensus 525 ~~-p~-~r~~~s~~~~-----~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~-~~s~v~~-~~----~Iyv 591 (680)
.. +. ......+..+ ++.++++|+.++ .+..++........+..+..... ..+++.. ++ .+++
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 01 10 1111112222 366777776553 34555666666655554443222 2333333 33 7788
Q ss_pred EeccCCCCCCCeEEEEeCCC
Q 005735 592 LGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 592 iGG~~~~~~~~~v~~yD~~t 611 (680)
.|+.++ .+.+||..+
T Consensus 235 s~~~dg-----~i~iwd~~~ 249 (351)
T 3f3f_A 235 TGCKDG-----RIRIFKITE 249 (351)
T ss_dssp EEETTS-----CEEEEEEEE
T ss_pred EEcCCC-----eEEEEeCCC
Confidence 887654 366776654
No 51
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.11 E-value=0.078 Score=56.23 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=118.6
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
...+.+++.+++.|+.+ ..+.+||..+.+....-.. ......+++.. +..+|+.++.+ ..+.+||..
T Consensus 174 ~~~~~~~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~ 242 (433)
T 3bws_A 174 TISIPEHNELWVSQMQA-----NAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRK 242 (433)
T ss_dssp EEEEGGGTEEEEEEGGG-----TEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred EEEEcCCCEEEEEECCC-----CEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECC
Confidence 34556688888888753 4688999887654322111 11122233333 45677776544 368999998
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCc---ccceEEEEeCCCccEEEcccccccccceEEEEE--CC-E
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLE---CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NG-V 541 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~---~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g-~ 541 (680)
+.+....-.. .. ....+.+ +++.+++++..... ....+.+||+.+++-......+. ....+.+ ++ .
T Consensus 243 ~~~~~~~~~~--~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~ 316 (433)
T 3bws_A 243 TKLEIRKTDK--IG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENK 316 (433)
T ss_dssp TTEEEEECCC--CS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTE
T ss_pred CCcEEEEecC--CC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCE
Confidence 8866443222 11 1222333 45444444322111 12468899998876433321111 1112222 33 6
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCC----------CCCeEEEEeCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSA----------MVPSIEVYDPR 610 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~----------~~~~v~~yD~~ 610 (680)
+|+.++.+ ..+.+||+.+.+-... ++.......++.. +++.+++++.+... .-..+++||+.
T Consensus 317 l~~~~~~~-----~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 317 IYVSDMCC-----SKIEVYDLKEKKVQKS--IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEETTT-----TEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEecCC-----CEEEEEECCCCcEEEE--ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 88876654 3789999987654332 2222223333333 44433344332111 12379999998
Q ss_pred CCcEEEcCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcC
Q 005735 611 LGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 611 t~~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
+.+....-. ......+++.. +++.+++++... ..+.+|+.
T Consensus 390 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~~~ 430 (433)
T 3bws_A 390 TDTVKEFWE--AGNQPTGLDVSPDNRYLVISDFLD-----HQIRVYRR 430 (433)
T ss_dssp TTEEEEEEE--CSSSEEEEEECTTSCEEEEEETTT-----TEEEEEEE
T ss_pred CCcEEEEec--CCCCCceEEEcCCCCEEEEEECCC-----CeEEEEEe
Confidence 876544321 12222233332 555555554322 24667764
No 52
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.11 E-value=0.21 Score=49.54 Aligned_cols=218 Identities=9% Similarity=-0.002 Sum_probs=115.5
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
....+..++.+|+....+ ..+.+||+. +.+............++++.. ++.+|+..... ..+.+||+.
T Consensus 65 ~~i~~~~~g~l~v~~~~~-----~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~ 133 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGA-----NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTAD 133 (300)
T ss_dssp EEEEECTTSCEEEEETTT-----TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-----TEEEEECTT
T ss_pred eeEEECCCCCEEEEecCC-----CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC-----CeEEEECCC
Confidence 345566678888865422 358899988 666544322122333444444 67888875432 368889987
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
++..... ++..........+ ++++|+.... ...+.+||+ ++++.... ++..........+ ++.||+.
T Consensus 134 -g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 134 -GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-----NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp -SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEE
T ss_pred -CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-----CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEE
Confidence 6554332 2211122222333 5778886431 246888998 66665542 2222122223333 5788886
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCc
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSR 624 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R 624 (680)
... ...+.+||+ ++.+.............+++.- ++.||+.... ...+..||+ +.............
T Consensus 205 ~~~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~~~ 272 (300)
T 2qc5_A 205 EIM-----GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEYQLQTENA 272 (300)
T ss_dssp ETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEEECCSTTC
T ss_pred ccC-----CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEEECCccCC
Confidence 432 236889998 6666655321111222333332 5678887532 356889998 45555432111111
Q ss_pred cceEEEEE-CCEEEEEe
Q 005735 625 GYLGAAVV-KEAIYVIG 640 (680)
Q Consensus 625 ~~~s~v~~-~~~lyV~G 640 (680)
...+++.- +++||+.+
T Consensus 273 ~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 273 EPHGITFGKDGSVWFAL 289 (300)
T ss_dssp CCCCEEECTTSCEEEEC
T ss_pred ccceeEeCCCCCEEEEc
Confidence 22344443 57777765
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.043 Score=56.15 Aligned_cols=227 Identities=8% Similarity=0.068 Sum_probs=112.6
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++.+++.|+.++ .+.+||..++..... +.........+.+ ++..++.|+.+ ..+.+||.
T Consensus 36 ~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~ 103 (369)
T 3zwl_B 36 TQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDV 103 (369)
T ss_dssp EEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEET
T ss_pred EEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Confidence 4566667888888887653 578888877654322 1111222222223 46667777765 36889998
Q ss_pred CCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCcc----EEEccccc-----ccc--cceEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGK----WIRTRSML-----QKR--FALAAA 536 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~----W~~i~~~p-----~~r--~~~s~~ 536 (680)
.+.+....-..+ ..-.+.+.. +++.++.++.+.......+.+||+.+.. +......+ ... .....+
T Consensus 104 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 104 SNGQCVATWKSP--VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTCCEEEEEECS--SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCcEEEEeecC--CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 877653332211 111122222 5566666654422233467777776542 21111101 000 022222
Q ss_pred EE--CCEEEEEcCCCCCCcCceeEEEeCCC-CcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 537 EL--NGVLYATGGYDGNEYMNSAERFDPRE-HYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 537 ~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t-~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
.+ ++..+++|+.++ .+.+||..+ ..-...-.. ......+++.. ++..++.|+.+ ..+.+||..+.
T Consensus 182 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~ 250 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDG-----KISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTL 250 (369)
T ss_dssp EECGGGCEEEEEETTS-----EEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred EEcCCCCEEEEEcCCC-----EEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCC
Confidence 22 566667776553 688999887 332222111 11122223322 56666777654 36889999876
Q ss_pred cEEEcCCCCCCccceEEEEE-CCEEEEEecccC
Q 005735 613 SWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKN 644 (680)
Q Consensus 613 ~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~ 644 (680)
.....-. .......++.. ++..+++|+.++
T Consensus 251 ~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 251 QVLKKYE--TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp CEEEEEE--CSSCEEEEEECSSSSEEEEEECCC
T ss_pred ceeeeec--CCCCceeEEecCCCceEEEeecCC
Confidence 5443322 11111222222 456666665443
No 54
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.10 E-value=0.22 Score=50.70 Aligned_cols=235 Identities=13% Similarity=0.066 Sum_probs=119.5
Q ss_pred eEEEcCC-CEEEEEecCCC-CcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDPS-ESIYLVGGCDG-DSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~~-~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
...+.++ +.+|+...... ......++++|+.+.+....-+.. ...+.++.. ++.+|+.++.. ..+++||
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d 117 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN-----SAVTAID 117 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT-----TEEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC-----CEEEEEe
Confidence 3444554 56766553211 112457999999887644332211 112233333 45688877643 3789999
Q ss_pred CCCCcEEECCCCCCCC--------cccEEEEE-C-CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE
Q 005735 468 PANDEWTSRPSLNGTK--------GSLAGATI-D-NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE 537 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r--------~~~a~~v~-~-gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~ 537 (680)
+.+.+-...-..+... .-...+.. + +.+|+.+... ...+.+||+.+.+-...-+.. ......++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 192 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNT-GKMSTGLAL 192 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCC-CTTCCCCEE
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCC-CCccceEEE
Confidence 9887643221111111 11223332 3 4577765221 245889999887643322211 111122222
Q ss_pred E--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC---CCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 538 L--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN---RRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 538 ~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p---~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
. ++.+|+... + ..+.+||+.+.+-...-..+ .......++.. ++.+|+.+.. ...+.+||+.
T Consensus 193 s~dg~~l~~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~ 261 (353)
T 3vgz_A 193 DSEGKRLYTTNA-D-----GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTR 261 (353)
T ss_dssp ETTTTEEEEECT-T-----SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETT
T ss_pred CCCCCEEEEEcC-C-----CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECC
Confidence 2 345666543 2 47889999887644332221 11222233443 4567766532 3578999998
Q ss_pred CCcEEEcCCCCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 611 LGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 611 t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+.+....-..+.+ ..++.. ++.+|+.+..+ ..+.+|+..
T Consensus 262 ~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~------~~v~~~d~~ 302 (353)
T 3vgz_A 262 NGNILAKVAAPES---LAVLFNPARNEAYVTHRQA------GKVSVIDAK 302 (353)
T ss_dssp TCCEEEEEECSSC---CCEEEETTTTEEEEEETTT------TEEEEEETT
T ss_pred CCcEEEEEEcCCC---ceEEECCCCCEEEEEECCC------CeEEEEECC
Confidence 8765543333333 123332 34577765433 257777764
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.10 E-value=0.034 Score=64.51 Aligned_cols=231 Identities=12% Similarity=0.159 Sum_probs=120.0
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
..+..+.+++..+++|+.+ ..+.+||..++.....-...... -.+++.. ++..++.|+.+ ..+.+||.
T Consensus 16 v~~i~~sp~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 84 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYS-----GRVEIWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDD-----FRIRVFNY 84 (814)
T ss_dssp EEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSC-EEEEEEEGGGTEEEEEETT-----SEEEEEET
T ss_pred eEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceEEEEecCCCc-EEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence 3456677788888888754 36889998887643321111111 1222222 56667777754 36889998
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCc-cEEEcccccc-cccceEEEEE--CCEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIG-KWIRTRSMLQ-KRFALAAAEL--NGVL 542 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i~~~p~-~r~~~s~~~~--~g~L 542 (680)
.+++....-. .......+..+ ++..++.|+.+ ..+.+||..++ ..... +.. .....+++.. ++.+
T Consensus 85 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 85 NTGEKVVDFE--AHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp TTCCEEEEEE--CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEE
T ss_pred CCCcEEEEEe--cCCCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCE
Confidence 8876533211 11111222222 56566666644 35778888765 22221 111 1112222333 4567
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE---CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL---NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~---~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
+++|+.++ .+.+||..+..-..............++.. ++.+++.|+.+ ..+.+||..+..-...
T Consensus 156 l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~-- 223 (814)
T 3mkq_A 156 FASGCLDR-----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVAT-- 223 (814)
T ss_dssp EEEEETTS-----EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEE--
T ss_pred EEEEeCCC-----eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEE--
Confidence 77777654 688899866542222111111222222222 56677777754 3688999877653321
Q ss_pred CCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 620 MKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 620 lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+.........+.+ ++.+++.||.++ .+.+|+..
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg------~v~vwd~~ 258 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDG------TLKIWNSS 258 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTS------CEEEEETT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCC------eEEEEECC
Confidence 1111122222223 566777777654 36666654
No 56
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.09 E-value=0.0098 Score=63.99 Aligned_cols=224 Identities=14% Similarity=0.176 Sum_probs=116.2
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
+..++.+++.|+.+ ..+.+||..+++.... +.........+..++..++.|+.++ .+.+||..+..-.
T Consensus 179 l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~~~~ 246 (435)
T 1p22_A 179 LQYDERVIITGSSD-----STVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDMASPTDI 246 (435)
T ss_dssp EECCSSEEEEEETT-----SCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS-----CEEEEECSSSSCC
T ss_pred EEECCCEEEEEcCC-----CeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeCCCCCCc
Confidence 33355566666654 3578888887754322 1112222233334555677777653 5788888765421
Q ss_pred EC-CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCc
Q 005735 475 SR-PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY 553 (680)
Q Consensus 475 ~l-~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~ 553 (680)
.. ..+........+...++..++.|+.+ ..+.+||+.+++-... +........++..++.+++.|+.++
T Consensus 247 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg--- 316 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDFDDKYIVSASGD-----RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN--- 316 (435)
T ss_dssp EEEEEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTS---
T ss_pred eeeeEecCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCC---
Confidence 10 11111122223344466666776654 3577899887753221 1111122233444667777777664
Q ss_pred CceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc----------EEEcCCCCCC
Q 005735 554 MNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS----------WMSGEPMKLS 623 (680)
Q Consensus 554 ~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~----------W~~v~~lp~~ 623 (680)
.+.+||..++.-... +........++.+++..++.|+.++ .+.+||+.+.. -..+..-.
T Consensus 317 --~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~h~-- 385 (435)
T 1p22_A 317 --TIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDG-----KIKVWDLVAALDPRAPAGTLCLRTLVEHS-- 385 (435)
T ss_dssp --CEEEEETTTCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS-----CEEEEEHHHHTSTTSCTTTTEEEEECCCS--
T ss_pred --eEEEEECCCCCEEEE--EeCCcCcEEEEEecCCEEEEEeCCC-----cEEEEECCCCCCccccccchheeeccCCC--
Confidence 688999887653322 2211122233344777788887653 47788875432 11221111
Q ss_pred ccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 624 RGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 624 R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.....+..++..++.||.++ .+.+|+..
T Consensus 386 -~~v~~l~~~~~~l~s~s~Dg------~i~iwd~~ 413 (435)
T 1p22_A 386 -GRVFRLQFDEFQIVSSSHDD------TILIWDFL 413 (435)
T ss_dssp -SCCCCEEECSSCEEECCSSS------EEEEEC--
T ss_pred -CCeEEEEeCCCEEEEEeCCC------EEEEEECC
Confidence 11122233777788887654 47788765
No 57
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.08 E-value=0.12 Score=53.33 Aligned_cols=221 Identities=16% Similarity=0.226 Sum_probs=110.0
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCcc-ceEEEE-ECCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARS-YASAAM-LNGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~-~~s~v~-~~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
+..+.+++.+++.||.+ ..+.+||..+.. ......+..... ..++.. -++. ++.|+.+ ..+.+||
T Consensus 102 ~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd 170 (340)
T 1got_B 102 TCAYAPSGNYVACGGLD-----NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWD 170 (340)
T ss_dssp EEEECTTSSEEEEEETT-----CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEE
T ss_pred EEEECCCCCEEEEEeCC-----CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcEEEEE
Confidence 44556677778888765 356778876542 111111111111 112222 2555 4555544 3588899
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLY 543 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Ly 543 (680)
..+.+-... +........++.+ ++.+++.|+.++ .+.+||+.++.-... +.........+.+ ++.++
T Consensus 171 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 171 IETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp TTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEE
Confidence 888754322 1111111122222 567888877653 467888887653221 1111111122222 56777
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
+.|+.++ .+.+||..+..-...-..+........+.+ ++.+++.|+.+ ..+.+||..+..-. ..+.
T Consensus 242 ~s~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----~~i~vwd~~~~~~~--~~~~ 309 (340)
T 1got_B 242 ATGSDDA-----TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----FNCNVWDALKADRA--GVLA 309 (340)
T ss_dssp EEEETTS-----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEE--EEEE
T ss_pred EEEcCCC-----cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC-----CeEEEEEcccCcEe--eEee
Confidence 8887664 678899887653322111111112222223 67777777754 35889998664322 1111
Q ss_pred CCccceEEEEE--CCEEEEEecccC
Q 005735 622 LSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 622 ~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
........+.+ ++..++.||.++
T Consensus 310 ~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 310 GHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTS
T ss_pred cCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 11111222222 566777777654
No 58
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.052 Score=56.03 Aligned_cols=225 Identities=14% Similarity=0.151 Sum_probs=110.8
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
+.+++.|+.++ .+.++|...........+.........+.+ ++.+++.|+.+ ..+.++|..+.+-...
T Consensus 48 ~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D-----~~i~lWd~~~~~~~~~ 117 (321)
T 3ow8_A 48 SETVVTGSLDD-----LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD-----AHIRLWDLENGKQIKS 117 (321)
T ss_dssp -CEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred CCEEEEEcCCC-----CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCEEEE
Confidence 45778888654 345555544443322222222222222222 45566677765 3688899887754321
Q ss_pred CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCCCcCc
Q 005735 477 PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMN 555 (680)
Q Consensus 477 ~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~ 555 (680)
-..........+..-+++.++.|+.+ ..+.+||..+++-...-... .....+++.. ++++++.|+.++
T Consensus 118 ~~~~~~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~lasg~~dg----- 186 (321)
T 3ow8_A 118 IDAGPVDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGAIDG----- 186 (321)
T ss_dssp EECCTTCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEEEcCCC-----
Confidence 11111111112222266777777654 34678888776532211111 1111122222 677777887664
Q ss_pred eeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--
Q 005735 556 SAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-- 632 (680)
Q Consensus 556 ~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-- 632 (680)
.+.+||..+++-...-.. ......+++.. ++.+++.|+.++ .+.+||..+...... +.........+.+
T Consensus 187 ~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDG-----YIKIYDVQHANLAGT--LSGHASWVLNVAFCP 258 (321)
T ss_dssp CEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECT
T ss_pred eEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCC-----eEEEEECCCcceeEE--EcCCCCceEEEEECC
Confidence 688999987754322111 11111222222 667777777653 488999887654321 1111122222233
Q ss_pred CCEEEEEecccCCCcccceEEEEcCC
Q 005735 633 KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 633 ~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
++..++.|+.++ .+.+|+..
T Consensus 259 ~~~~l~s~s~D~------~v~iwd~~ 278 (321)
T 3ow8_A 259 DDTHFVSSSSDK------SVKVWDVG 278 (321)
T ss_dssp TSSEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------cEEEEeCC
Confidence 566777777654 25555543
No 59
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.06 E-value=0.11 Score=52.79 Aligned_cols=195 Identities=15% Similarity=0.107 Sum_probs=118.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
....+..++.+|+..|..+ .+.+.++|+.+++-...-+++......+++..+++||+..-.. +.+++||+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~-----~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK-----NIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC-----SEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC-----CEEEEEECCC
Confidence 4666766689999887422 3569999999998655444444445567777899999986533 5799999998
Q ss_pred CcEEECCCCCCC-CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEE-cc--cccccc-cceEEEEECCEEEEE
Q 005735 471 DEWTSRPSLNGT-KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR-TR--SMLQKR-FALAAAELNGVLYAT 545 (680)
Q Consensus 471 ~~W~~l~~lp~~-r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~-i~--~~p~~r-~~~s~~~~~g~Lyv~ 545 (680)
.+-.. .++.. ....+.+.-++++|+..| .+.+..+|+.+.+-.. ++ ..+.+. ....+...++++|+-
T Consensus 96 ~~v~~--~i~~g~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 96 LSNIK--NFTHQMKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp TEEEE--EEECCSSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred CcEEE--EEECCCCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 75422 22222 223344443566888743 3578899999876432 21 111221 122333448899975
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEE---eccC---------CCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTK---IANM---------NRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~---v~~~---------p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
-.. .+.|.+.|+.+++-.. ++.+ +..-.-.+++.. ++++||.|+.. +.+++.++..
T Consensus 168 ~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 168 IWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW-----PKLFEIKLHL 237 (266)
T ss_dssp ETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-----SEEEEEEEEE
T ss_pred cCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC-----CeEEEEEEec
Confidence 322 3589999999876433 3211 011122455555 46899988753 5566666543
No 60
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.04 E-value=0.31 Score=49.62 Aligned_cols=221 Identities=10% Similarity=0.074 Sum_probs=115.1
Q ss_pred eEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC--------ccceEEEEE--CCEEEEEecCCCCCcc
Q 005735 392 ELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA--------RSYASAAML--NGELYIFGGGDGNSWH 460 (680)
Q Consensus 392 ~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~--------R~~~s~v~~--~~~IyV~GG~~~~~~~ 460 (680)
...+.+++ .+|+.++.+ ..+.++|+.+++....-..... ...+.++.. ++.+|+.+... .
T Consensus 93 ~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~ 163 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----E 163 (353)
T ss_dssp SEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----S
T ss_pred eEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----C
Confidence 44455544 477766533 3689999988764332212111 112334443 46788876322 2
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEEC-CEEEEEccCCCCcccceEEEEeCCCccEEEccccc---ccccceEEE
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATID-NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML---QKRFALAAA 536 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~-gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p---~~r~~~s~~ 536 (680)
..++++|+.+.+-...-+.........+..-+ +.+|+... ...+.+||+.+++-...-..+ .......++
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE
T ss_pred ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEE
Confidence 46899999887643322211111111222224 45666543 246789999887643322221 111222233
Q ss_pred EE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 537 EL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 537 ~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
.. ++.+|+.... ...+.+||+.+.+....-..+.+ ..++.. ++.+|+.+..+ ..+.+||+.+.
T Consensus 238 ~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~ 304 (353)
T 3vgz_A 238 LDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQA-----GKVSVIDAKSY 304 (353)
T ss_dssp EETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTT-----TEEEEEETTTT
T ss_pred ECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCC-----CeEEEEECCCC
Confidence 33 4567776532 24789999988776544444333 223333 44577766432 57899999887
Q ss_pred cEEEcCCCCCCccceEEEEE-CC-EEEEEecc
Q 005735 613 SWMSGEPMKLSRGYLGAAVV-KE-AIYVIGGV 642 (680)
Q Consensus 613 ~W~~v~~lp~~R~~~s~v~~-~~-~lyV~GG~ 642 (680)
+.... ++.+....+++.. ++ .||+.+..
T Consensus 305 ~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 305 KVVKT--FDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEE--EECCSEEEEEEECTTSCEEEEEEEC
T ss_pred eEEEE--EecCCCCCeEEEcCCCCEEEEEEcc
Confidence 65432 2222233333333 44 47776543
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.04 E-value=0.057 Score=54.50 Aligned_cols=221 Identities=17% Similarity=0.208 Sum_probs=116.8
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++..++.|+.+ ..+..||..++.......+.........+.+ ++..++.|+.++ .+.+||.
T Consensus 101 ~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~~~d~ 170 (337)
T 1gxr_A 101 RSCKLLPDGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG-----NIAVWDL 170 (337)
T ss_dssp EEEEECTTSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred EEEEEcCCCCEEEEEcCC-----CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeC
Confidence 345555677777777754 3688899988775443332222222222222 566677777553 5889999
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYAT 545 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~ 545 (680)
.+.+....- ........+..+ +++.++.|+.+ ..+.+||+.+.+-......+.. ..+++.. ++.++++
T Consensus 171 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 171 HNQTLVRQF--QGHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAV 241 (337)
T ss_dssp TTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEE
T ss_pred CCCceeeee--ecccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeeecCCCc--eEEEEECCCCCEEEE
Confidence 887643321 111122222223 56666766644 3578899987764332222111 1222222 5667777
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCc
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSR 624 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R 624 (680)
|+.++ .+.+||..+..-..+.. .......++.. ++++++.|+.+ ..+.+||..+..-..... ...
T Consensus 242 ~~~~~-----~i~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~--~~~ 307 (337)
T 1gxr_A 242 GMESS-----NVEVLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSK--ESS 307 (337)
T ss_dssp EETTS-----CEEEEETTSSCEEEECC--CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE--CSS
T ss_pred EcCCC-----cEEEEECCCCCeEEEcC--CccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEec--CCC
Confidence 76553 58889988765443322 12222233332 56667777654 468899988766543211 112
Q ss_pred cceEEEEE-CCEEEEEecccC
Q 005735 625 GYLGAAVV-KEAIYVIGGVKN 644 (680)
Q Consensus 625 ~~~s~v~~-~~~lyV~GG~~~ 644 (680)
...+++.. +++.++.|+.++
T Consensus 308 ~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 308 SVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp CEEEEEECTTSCEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEecCCC
Confidence 22222222 567777777554
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.03 E-value=0.089 Score=55.42 Aligned_cols=229 Identities=14% Similarity=0.102 Sum_probs=116.9
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
...+++.+++.|+.++ .+.+||..++.-...-.... ..-.+++.. ++.+++.|+.+ ..+.+||..+.+
T Consensus 104 ~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 172 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEG-----DIKVLDSNFNLQREIDQAHV-SEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGS 172 (420)
T ss_dssp EECSSSCEEEEEETTS-----CEEEECTTSCEEEEETTSSS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCC
T ss_pred EEecCCCEEEEEECCC-----CEEEEeCCCcceeeeccccc-CccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCc
Confidence 3455777888887643 57889988776544321111 112222222 56677777765 368889987653
Q ss_pred EEECCCCCCCCccc-EEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEccccc-cc-ccceEEEE-----------
Q 005735 473 WTSRPSLNGTKGSL-AGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML-QK-RFALAAAE----------- 537 (680)
Q Consensus 473 W~~l~~lp~~r~~~-a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p-~~-r~~~s~~~----------- 537 (680)
-.. .+....... +.+.. +++.++.|+.++ .+.+||+.+++-...-... .. ....+++.
T Consensus 173 ~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 173 NPR--TLIGHRATVTDIAIIDRGRNVLSASLDG-----TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp CCE--EEECCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred Cce--EEcCCCCcEEEEEEcCCCCEEEEEcCCC-----cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 111 111111111 22222 566666776553 4778888876532221110 01 11111111
Q ss_pred -----------ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeE
Q 005735 538 -----------LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSI 604 (680)
Q Consensus 538 -----------~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v 604 (680)
-++.+++.|+.++ .+.+||..+..-...-.........+++.. ++. +++.|+.+ ..+
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i 315 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN-----GML 315 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT-----SEE
T ss_pred ccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC-----CeE
Confidence 1567777777654 588999887653322222222222333332 444 77777754 468
Q ss_pred EEEeCCCCcE--EEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcC
Q 005735 605 EVYDPRLGSW--MSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 605 ~~yD~~t~~W--~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.+||+.+..- ..+..- ......++...++++++.||.++ .+.+|+.
T Consensus 316 ~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~d~------~v~iw~~ 363 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLIN-EGTPINNVYFAAGALFVSSGFDT------SIKLDII 363 (420)
T ss_dssp EEEETTCTTSCSEEEEES-TTSCEEEEEEETTEEEEEETTTE------EEEEEEE
T ss_pred EEEEcCCCcCchhhhhcc-CCCCceEEEeCCCCEEEEecCCc------cEEEEec
Confidence 8999987531 222110 11122233344788888887653 3555553
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.02 E-value=0.094 Score=53.91 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=101.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++.+++.|+.++ .+.+||..++.+.....+.........+.+ ++..++.|+.++ .+.+||.
T Consensus 56 ~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~ 125 (372)
T 1k8k_C 56 TGVDWAPDSNRIVTCGTDR-----NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYF 125 (372)
T ss_dssp EEEEEETTTTEEEEEETTS-----CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEE
T ss_pred cEEEEeCCCCEEEEEcCCC-----eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEe
Confidence 3455566777777887543 578888888876655333222222222333 566777777553 3566665
Q ss_pred CCCc-EEECCCCCCC-CcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc---------E-------EEcccccc
Q 005735 469 ANDE-WTSRPSLNGT-KGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK---------W-------IRTRSMLQ 528 (680)
Q Consensus 469 ~t~~-W~~l~~lp~~-r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~---------W-------~~i~~~p~ 528 (680)
.+.. |.....+..+ .....+..+ +++.++.|+.++ .+.+||..... | ..+..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC-----CEEEEEcccccccccccccccccccchhhheEecCC
Confidence 5443 3222222122 111222222 566777776543 46678854211 1 11111111
Q ss_pred cccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEE
Q 005735 529 KRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIE 605 (680)
Q Consensus 529 ~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~ 605 (680)
.......+.+ ++..++.|+.++ .+.+||..+.+-...-..... ...+++. -++.+++.| .+ ..+.
T Consensus 201 ~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d-----~~i~ 268 (372)
T 1k8k_C 201 SCGWVHGVCFSANGSRVAWVSHDS-----TVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HD-----CFPV 268 (372)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTT-----EEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TT-----SSCE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eC-----CeEE
Confidence 1111222233 556667776553 688899877653332211111 1222332 367766655 43 2356
Q ss_pred EEeCCC--CcEEEcCC
Q 005735 606 VYDPRL--GSWMSGEP 619 (680)
Q Consensus 606 ~yD~~t--~~W~~v~~ 619 (680)
+||..+ +.|..+..
T Consensus 269 i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 269 LFTYDSAAGKLSFGGR 284 (372)
T ss_dssp EEEEETTTTEEEECCC
T ss_pred EEEccCcCceEEEeec
Confidence 777777 88877643
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.02 E-value=0.058 Score=54.44 Aligned_cols=231 Identities=16% Similarity=0.182 Sum_probs=120.8
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeE----EEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEE
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVI----KTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W----~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~ 464 (680)
..+..+.+++.+++.|+ + ..+.+||..++.. ..+..........+++.. ++..++.|+.+ ..+.
T Consensus 54 v~~~~~~~~~~~l~~~~-d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 122 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-K-----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLS 122 (337)
T ss_dssp CCEEEECSSSSEEEEEC-B-----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred eEEEEEecCCcEEEEcC-C-----CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEE
Confidence 34566677888888887 3 3578888876532 111111111122222222 56666677654 3688
Q ss_pred EEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CC
Q 005735 465 SYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NG 540 (680)
Q Consensus 465 vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g 540 (680)
+||..+.+......+...........+ +++.++.|+.+ ..+.+||+.+++....-... ......+.+ ++
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDG 195 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCC--SSCEEEEEECTTS
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeecc--cCceEEEEECCCC
Confidence 999988775433322222222222222 56677777654 34778999887643321111 111222223 56
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
..++.|+.++ .+.+||..+.+-...-..+ .....++.. ++.++++|+.+ ..+.+||..+..-..+..
T Consensus 196 ~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 196 TKLWTGGLDN-----TVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp SEEEEEETTS-----EEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEECC
T ss_pred CEEEEEecCC-----cEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEcC
Confidence 6777776553 6889998877544332222 222233332 56677777654 358899998765443322
Q ss_pred CCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC
Q 005735 620 MKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 620 lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.. ....+++.. ++++++.|+.++ .+.+|+..
T Consensus 264 ~~--~~v~~~~~~~~~~~l~~~~~dg------~i~~~~~~ 295 (337)
T 1gxr_A 264 HE--SCVLSLKFAYCGKWFVSTGKDN------LLNAWRTP 295 (337)
T ss_dssp CS--SCEEEEEECTTSSEEEEEETTS------EEEEEETT
T ss_pred Cc--cceeEEEECCCCCEEEEecCCC------cEEEEECC
Confidence 11 112222222 466777776543 46666654
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.01 E-value=0.038 Score=58.62 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=120.4
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+..+.+++.++++|+.++ .+.+||..++.....-. ........+..++.+++.|+.+ ..+.+||..+
T Consensus 138 ~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 205 (401)
T 4aez_A 138 ASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLSSGSRS-----GAIHHHDVRI 205 (401)
T ss_dssp EEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEEEEETT-----SEEEEEETTS
T ss_pred EEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEEec--CCCCceEEEEECCCEEEEEcCC-----CCEEEEeccc
Confidence 3455666777888887643 57889988765433211 2222233334466677777765 3688888874
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEc-ccccccccceEEEEE--CCEEEEE
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT-RSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
..-... .+........+..+ ++.+++.|+.++ .+.+||+.+.+-... ..... ...+++.. +..+++.
T Consensus 206 ~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 206 ANHQIG-TLQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDARSSIPKFTKTNHNA--AVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp SSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCSSEEEEECCCSS--CCCEEEECTTSTTEEEE
T ss_pred Ccceee-EEcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccCCCCCccEEecCCcc--eEEEEEECCCCCCEEEE
Confidence 321110 01111112222222 667777777553 577899887653221 11111 11222222 4467777
Q ss_pred cC--CCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC
Q 005735 546 GG--YDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 621 (680)
Q Consensus 546 GG--~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp 621 (680)
|| .+ ..+.+||..+......-.. .....+++.. ++ .+++.+|.. -..+.+||..+.....+..++
T Consensus 278 ~~gs~d-----~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~----dg~i~v~~~~~~~~~~~~~~~ 346 (401)
T 4aez_A 278 GGGTMD-----KQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFP----DNNLSIWSYSSSGLTKQVDIP 346 (401)
T ss_dssp ECCTTT-----CEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTT----TCEEEEEEEETTEEEEEEEEE
T ss_pred ecCCCC-----CEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecC----CCcEEEEecCCccceeEEEec
Confidence 64 33 3688999887654433221 2222222222 34 455554532 246889998887766654333
Q ss_pred CCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 622 LSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 622 ~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
........+.+ ++.+++.||.++ .+.+|+..
T Consensus 347 ~h~~~v~~~~~s~dg~~l~s~~~dg------~i~iw~~~ 379 (401)
T 4aez_A 347 AHDTRVLYSALSPDGRILSTAASDE------NLKFWRVY 379 (401)
T ss_dssp CCSSCCCEEEECTTSSEEEEECTTS------EEEEEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCC------cEEEEECC
Confidence 22222222222 677777777654 47777765
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.00 E-value=0.18 Score=54.07 Aligned_cols=174 Identities=12% Similarity=0.156 Sum_probs=93.2
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCccc-EEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSL-AGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~-a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
.++.+++.|+.++ .+.+||..+.+-... +....... +.+.. ++..++.|+.++ .+.+||+.+++-.
T Consensus 278 ~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 278 GHGNIVVSGSYDN-----TLIVWDVAQMKCLYI--LSGHTDRIYSTIYDHERKRCISASMDT-----TIRIWDLENGELM 345 (464)
T ss_dssp EETTEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCcEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEE
Confidence 3455666676553 588999887654322 11111111 22222 566677776543 4778999877532
Q ss_pred EcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCC
Q 005735 522 RTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMV 601 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~ 601 (680)
. .+........++.+++..++.|+.++ .+.+||..+..-....... ......+...++.+++.|+ +
T Consensus 346 ~--~~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-d----- 411 (464)
T 3v7d_B 346 Y--TLQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHHT-NLSAITTFYVSDNILVSGS-E----- 411 (464)
T ss_dssp E--EECCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEECT-TCCCEEEEEECSSEEEEEE-T-----
T ss_pred E--EEeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecCC-CCccEEEEEeCCCEEEEec-C-----
Confidence 2 22222222334455677777777664 6889998876533222211 1122233345777777776 3
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEeccc
Q 005735 602 PSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVK 643 (680)
Q Consensus 602 ~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~ 643 (680)
+.+.+||..+++-......+....-.+++..++.+++.|+.+
T Consensus 412 g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~ 453 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 453 (464)
T ss_dssp TEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEET
T ss_pred CeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeC
Confidence 468999998876654322222222333333455555555443
No 67
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.97 E-value=0.43 Score=49.07 Aligned_cols=261 Identities=12% Similarity=0.050 Sum_probs=140.1
Q ss_pred ChhhhhhhhcccccceEEEcCCCEEEEEecCCCCc-------------------ccCeEEEEeCCCCeEEEcCCCCCCcc
Q 005735 377 DTKECMYEKLLESSDELHLDPSESIYLVGGCDGDS-------------------WLSTLELYLPSCDVIKTLKPMSSARS 437 (680)
Q Consensus 377 p~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~-------------------~~~~v~~yd~~t~~W~~l~~mp~~R~ 437 (680)
+.|+.... -.......++.+++.||+.+..+..- ....+.++|+.+++.........-..
T Consensus 14 ~~wp~~~~-~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 92 (329)
T 3fvz_A 14 LDWPGVYL-LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYL 92 (329)
T ss_dssp TTCGGGGC-CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSS
T ss_pred cCCchhce-ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCC
Confidence 34544322 23444567788889999887654210 11369999998777544321111122
Q ss_pred ceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCC--cEEECCC-C-----CCCCcccEEEEE---CCEEEEEccCCCCc
Q 005735 438 YASAAML-NGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPS-L-----NGTKGSLAGATI---DNKIFAIGGGNGLE 505 (680)
Q Consensus 438 ~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~-l-----p~~r~~~a~~v~---~gkIyV~GG~~~~~ 505 (680)
.+.+++. ++.|||..... ..+.+||+... .-..+.. . .........+.+ ++.|||..+.
T Consensus 93 p~gia~d~~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~---- 163 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY---- 163 (329)
T ss_dssp EEEEEECTTSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----
T ss_pred ceEEEECCCCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----
Confidence 3344443 67799887543 46889998754 1222211 0 111122333333 5789998752
Q ss_pred ccceEEEEeCCCccEEEcccc-------cccccce-EEEEE-C-CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC-C
Q 005735 506 CFSDVEMLDLDIGKWIRTRSM-------LQKRFAL-AAAEL-N-GVLYATGGYDGNEYMNSAERFDPREHYWTKIANM-N 574 (680)
Q Consensus 506 ~~~~ve~yD~~t~~W~~i~~~-------p~~r~~~-s~~~~-~-g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~-p 574 (680)
....+.+||+....-..+... +.....+ .+++- + +.||+....+ ..|.+||+.+++....-.. .
T Consensus 164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN-----GRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEECCTT
T ss_pred CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC-----CEEEEEECCCCcEEEEEeccc
Confidence 124688999654433333211 1111223 33333 3 8999986543 4789999987666544222 2
Q ss_pred CCCceeEEEEECCEEEEEeccCC--CCCCCeEEEEeCCCCcEEEc-CCCCCC-ccceEEEEE-CCEEEEEecccCCCccc
Q 005735 575 RRRGCHSLAVLNGKLYALGGFDG--SAMVPSIEVYDPRLGSWMSG-EPMKLS-RGYLGAAVV-KEAIYVIGGVKNGSEIV 649 (680)
Q Consensus 575 ~~r~~~s~v~~~~~IyviGG~~~--~~~~~~v~~yD~~t~~W~~v-~~lp~~-R~~~s~v~~-~~~lyV~GG~~~~~~~~ 649 (680)
......+++...+.+|...|..- ......+.++|..+...... ...+.. ....++++- ++.|||....+.
T Consensus 239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~----- 313 (329)
T 3fvz_A 239 FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN----- 313 (329)
T ss_dssp TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-----
T ss_pred cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-----
Confidence 22233344444577777766321 12335789999887766543 221221 222344443 568999875433
Q ss_pred ceEEEEcCC
Q 005735 650 DTVERFKEG 658 (680)
Q Consensus 650 ~~ve~y~~~ 658 (680)
.|.+|++.
T Consensus 314 -~I~~~~~~ 321 (329)
T 3fvz_A 314 -TVWKFTLT 321 (329)
T ss_dssp -CEEEEEEE
T ss_pred -EEEEEeCC
Confidence 47777653
No 68
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.92 E-value=0.094 Score=53.37 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=110.1
Q ss_pred eEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCC
Q 005735 439 ASAAMLN-GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 517 (680)
Q Consensus 439 ~s~v~~~-~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t 517 (680)
+.++..+ +.||+..|..+ .+.+.++|+.+++-...-+++......+.+..++++|+..- ..+.+.+||+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~-----~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW-----LKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET-----TCSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe-----cCCEEEEEECCC
Confidence 5666655 89999877432 25799999999876543334333344456667889999853 346789999997
Q ss_pred ccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-ec--cCCCCC-ceeEEEEECCEEEEEe
Q 005735 518 GKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTK-IA--NMNRRR-GCHSLAVLNGKLYALG 593 (680)
Q Consensus 518 ~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-v~--~~p~~r-~~~s~v~~~~~IyviG 593 (680)
.+=...-+.+ ...+.+++.-++++|+.-| .+.+.++|+.+.+-.. ++ ..+.+. ....+...+++||+--
T Consensus 96 ~~v~~~i~~g-~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 96 LSNIKNFTHQ-MKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp TEEEEEEECC-SSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEECC-CCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 6532211112 1223334444567888654 3589999998865332 22 111111 1123334488888764
Q ss_pred ccCCCCCCCeEEEEeCCCCcE---EEcCCC---------CCCccceEEEEE--CCEEEEEecccC
Q 005735 594 GFDGSAMVPSIEVYDPRLGSW---MSGEPM---------KLSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 594 G~~~~~~~~~v~~yD~~t~~W---~~v~~l---------p~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
.. .++|.+.|+.+.+= ..++.+ +..-...+++.. ++++||.|+...
T Consensus 169 ~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 169 WQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp TT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred CC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 32 46899999988743 333211 000122455555 568999998765
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.094 Score=54.74 Aligned_cols=231 Identities=11% Similarity=0.040 Sum_probs=114.2
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
..+..+.+++.+++.|+.++ .+.+||........+.... ..-.+++.. ++..++.|+.+ ..+.+||.
T Consensus 111 v~~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~ 178 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENG-----ELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVE-----NVTILWNV 178 (425)
T ss_dssp EEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETT-----CCEEEEET
T ss_pred eEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecC-----CeEEEEEC
Confidence 34555666777888887653 4778885554444443211 112222222 55566666654 35788888
Q ss_pred CCCcEEECCCCCCCC--------------cccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceE
Q 005735 469 ANDEWTSRPSLNGTK--------------GSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALA 534 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r--------------~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s 534 (680)
.+.+....-...... ...+.+...+..++.|+.+ ..+.+||+.+.+-...-.... ....+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~~~~~-~~i~~ 252 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKLIGHH-GPISV 252 (425)
T ss_dssp TTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEEECCCS-SCEEE
T ss_pred CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeeeeccCC-CceEE
Confidence 877654322221111 0222233333345555533 457889988764221111111 11122
Q ss_pred EEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 535 AAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 535 ~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++.. ++.+++.|+.++ .+.+||..+......-. ........++.. ++ +++.|+.+ ..+.+||+.+.
T Consensus 253 ~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~ 320 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDG-----TLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQN 320 (425)
T ss_dssp EEEETTTTEEEEEETTS-----CEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTT
T ss_pred EEECCCCCEEEEEcCCC-----EEEEEECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCC
Confidence 2222 566677776553 57888887654222211 112222334444 45 66666654 46889999776
Q ss_pred cEEEcCCCCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 613 SWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 613 ~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.-...-. ........+.+ ++.+++.|+.++ .+.+|+..
T Consensus 321 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg------~i~i~~~~ 360 (425)
T 1r5m_A 321 TLLALSI--VDGVPIFAGRISQDGQKYAVAFMDG------QVNVYDLK 360 (425)
T ss_dssp EEEEEEE--CTTCCEEEEEECTTSSEEEEEETTS------CEEEEECH
T ss_pred cEeEecc--cCCccEEEEEEcCCCCEEEEEECCC------eEEEEECC
Confidence 5333211 11112222233 566777776543 35666644
No 70
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.90 E-value=0.076 Score=55.18 Aligned_cols=193 Identities=15% Similarity=0.195 Sum_probs=105.0
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC-CccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS-ARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~-~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
......+++.+++.||.++ .+.++|..++.|.....+.. .......+.+ ++..++.|+.++ .+.++|
T Consensus 20 ~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~ 89 (345)
T 3fm0_A 20 WFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWK 89 (345)
T ss_dssp EEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred EEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEE
Confidence 3566777888888888753 47778888777653322211 1122222233 567777787653 467777
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc-EEEcccccccccceEEEEE--CCEE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK-WIRTRSMLQKRFALAAAEL--NGVL 542 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~i~~~p~~r~~~s~~~~--~g~L 542 (680)
..+..+..+..+........++.+ ++++++.|+.++ .+.+||+.+.. +..+..+.........+.+ ++.+
T Consensus 90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 777666544333222222222333 567777777653 46678876643 3322222211111222222 5667
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCC-ceeEEEEE-CCEEEEEeccCCCCCCCeEEEEe
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR-GCHSLAVL-NGKLYALGGFDGSAMVPSIEVYD 608 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r-~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD 608 (680)
++.|+.++ .+.+||..+..|..+..+.... ...+++.. ++..++.|+.++ .|.+||
T Consensus 165 l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-----~v~iW~ 222 (345)
T 3fm0_A 165 LASASYDD-----TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR-----TVRIWR 222 (345)
T ss_dssp EEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred EEEEeCCC-----cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC-----eEEEec
Confidence 77777664 5788898888887665443222 22233322 566777777654 355555
No 71
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.88 E-value=0.069 Score=54.31 Aligned_cols=182 Identities=15% Similarity=0.081 Sum_probs=112.1
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
.++...++.||+..|..+ .+.++|+.+++-..-- ++..-...+.+..+++||+.... .+.+.+||+.+.
T Consensus 58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl 126 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTT
T ss_pred ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcC
Confidence 455666899999998764 3889999988653322 44433444567778999998542 367899999987
Q ss_pred cEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe-c--cCCCCCc-eeEEEEECCEEEEEec
Q 005735 519 KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI-A--NMNRRRG-CHSLAVLNGKLYALGG 594 (680)
Q Consensus 519 ~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v-~--~~p~~r~-~~s~v~~~~~IyviGG 594 (680)
+-... ++.+..+.+++.-+++||+.-| .+.++.+|+.+.+-..- . .-+.+.. ...+...+++||+--
T Consensus 127 ~~~~t--i~~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv- 197 (268)
T 3nok_A 127 QRERT--TRYSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI- 197 (268)
T ss_dssp EEEEE--EECSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEEEE--EeCCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE-
Confidence 74332 2222234556666889999865 24799999998654332 1 1111111 122334588988643
Q ss_pred cCCCCCCCeEEEEeCCCCcE---EEcCCCC---------CCccceEEEEE--CCEEEEEecccC
Q 005735 595 FDGSAMVPSIEVYDPRLGSW---MSGEPMK---------LSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~~W---~~v~~lp---------~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
+ ..++|.+.|+++++- ..++.+. ..-.-.++|.. ++++||.|=...
T Consensus 198 w----~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 198 W----HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp T----TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred C----CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 2 246899999998753 3333221 11122344444 578999987664
No 72
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.86 E-value=0.11 Score=55.19 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=106.3
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC---CCccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS---SARSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp---~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
+..+.+++.+++.|+.+ ..+.++|..+++........ .+......+.+ ++.+|+.|+.+ ..+.+|
T Consensus 127 ~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~ 196 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVF 196 (433)
T ss_dssp CCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred EEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence 44555578888887653 34899999988766543321 11112222333 68888888754 468999
Q ss_pred eCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEE
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVL 542 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~L 542 (680)
|..+.+....-... ...-.+.+.. +..+|+.++.+ ..+.+||+.+++....-... .. ...+.+ +++.
T Consensus 197 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~--~~-~~~~~~~~~g~~ 267 (433)
T 3bws_A 197 DLKTLAYKATVDLT-GKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKTDKI--GL-PRGLLLSKDGKE 267 (433)
T ss_dssp ETTTCCEEEEEECS-SSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEECCCC--SE-EEEEEECTTSSE
T ss_pred ECCCceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEecCC--CC-ceEEEEcCCCCE
Confidence 98876543221111 1111222222 34577766433 36889999888754432221 11 222333 4544
Q ss_pred EEEcCCCCCC---cCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 543 YATGGYDGNE---YMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 543 yv~GG~~~~~---~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
+++++..... .-..+.+||+.+++.......+. ....++.. ++.+|+.++.+ ..+.+||+.+..-.
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQ 338 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEE
Confidence 4444432211 12478899998876443321111 11222222 34677776543 46899999876543
No 73
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.82 E-value=0.12 Score=54.09 Aligned_cols=233 Identities=14% Similarity=0.153 Sum_probs=116.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.++.+.+++..++.||.++ .+.++|..+......-..+..........-++..++.||.++ .+.+|+...
T Consensus 68 ~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~-----~i~v~~~~~ 137 (354)
T 2pbi_B 68 LCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN-----KCSVYPLTF 137 (354)
T ss_dssp EEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS-----EEEEEECCC
T ss_pred EEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC-----CEEEEEEec
Confidence 4556666788888888753 577888777654433222222222222222677778888663 566776643
Q ss_pred CcEEECCC----CCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE----CC
Q 005735 471 DEWTSRPS----LNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL----NG 540 (680)
Q Consensus 471 ~~W~~l~~----lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~----~g 540 (680)
..-..... +........++.+ ++..++.|+.+ ..+.+||+.+++-... +........++.+ ++
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-----~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-----GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSC
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCC
Confidence 21000000 0000111122222 44455555543 3577889888764322 1110011111222 35
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
.+++.|+.++ .+.+||..+.+....-.. ......+++.. ++.+++.|+.++ .+.+||+.+..-..+-.
T Consensus 211 ~~l~sgs~Dg-----~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 211 NTFVSGGCDK-----KAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYS 279 (354)
T ss_dssp CEEEEEETTS-----CEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCC-----eEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEc
Confidence 6777887764 688999988765433211 11112222222 566777777653 47889988764332211
Q ss_pred CCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 620 MKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 620 lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
..........+.+ ++.+++.|+.++ .+.+|+.
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~------~i~vwd~ 313 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDY------TINVWDV 313 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTS------CEEEEET
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCC------cEEEEEC
Confidence 1111112223333 567777776553 3566664
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.053 Score=56.00 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=116.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC-----eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD-----VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v 463 (680)
.+....+++.+++.|+.++ .+.++|.... .+..+..+......-..+.+ ++..++.|+.++ .+
T Consensus 62 ~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~-----~v 131 (330)
T 2hes_X 62 RSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK-----SV 131 (330)
T ss_dssp EEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS-----CE
T ss_pred EEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-----EE
Confidence 3455666778888888653 4666766432 12222111111111222223 567777777653 57
Q ss_pred EEEeCCC--CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-
Q 005735 464 ESYSPAN--DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL- 538 (680)
Q Consensus 464 ~vyD~~t--~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~- 538 (680)
.+||... ..++.+..+........++.+ ++.+++.|+.++ .+.++|..++.|..+..+.........+.+
T Consensus 132 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp EEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred EEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCCCcEEEEEec
Confidence 7888743 233332222211122222233 566777777653 466788777777655443322111122222
Q ss_pred -C--CEEEEEcCCCCCCcCceeEEEeCCC------CcEEEeccCC--CCCceeEEEEECCEEEEEeccCCCCCCCeEEEE
Q 005735 539 -N--GVLYATGGYDGNEYMNSAERFDPRE------HYWTKIANMN--RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVY 607 (680)
Q Consensus 539 -~--g~Lyv~GG~~~~~~~~~v~~yD~~t------~~W~~v~~~p--~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~y 607 (680)
+ +..++.|+.++ .+.+||..+ ..|..+..++ ......+++...+.+++.||.++ .+.+|
T Consensus 207 ~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg-----~v~iw 276 (330)
T 2hes_X 207 KTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG-----VLAVY 276 (330)
T ss_dssp CSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTS-----CEEEE
T ss_pred CCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCC-----EEEEE
Confidence 2 34566666654 455565532 2466555443 22333334333445666777553 57889
Q ss_pred eCCCCcEEEcCCCCCC-cc-ceEEEEE----CCEEEEEecccCCCcccceEEEEcC
Q 005735 608 DPRLGSWMSGEPMKLS-RG-YLGAAVV----KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 608 D~~t~~W~~v~~lp~~-R~-~~s~v~~----~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
|..++.|..+...... .. ....+.+ ++++++.||.++ .+.+|+.
T Consensus 277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg------~v~~W~~ 326 (330)
T 2hes_X 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG------IVNFWSL 326 (330)
T ss_dssp EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS------EEEEEEC
T ss_pred EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC------cEEEEEe
Confidence 9888888665332211 11 1222222 466788887654 4666654
No 75
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.76 E-value=0.072 Score=56.91 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=81.5
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++.+++.|+.++ .+.+||..++..... +......-..+.+ ++.+++.|+.++ .+.+||..
T Consensus 113 ~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~ 180 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQ 180 (410)
T ss_dssp EEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CCCEEETT
T ss_pred EEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCC
Confidence 456666778888888653 578888887653222 1111111122222 567777887663 46678877
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
+.+-.. .+........++.+ ++..++.|+.+ ..+.+||+.++.-... +.........+.+ ++.+++.
T Consensus 181 ~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 181 GFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp SSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEE
T ss_pred CCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEE
Confidence 654322 22211122222333 56667777654 3577899887753221 1111111112222 5677777
Q ss_pred cCCCCCCcCceeEEEeCCCCcEE
Q 005735 546 GGYDGNEYMNSAERFDPREHYWT 568 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~ 568 (680)
|+.++ .+.+||..+....
T Consensus 252 ~s~D~-----~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 252 CSNDQ-----TVRVWVVATKECK 269 (410)
T ss_dssp EETTS-----CEEEEETTTCCEE
T ss_pred EcCCC-----eEEEEECCCCcee
Confidence 77664 5778888776543
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.066 Score=55.93 Aligned_cols=192 Identities=11% Similarity=0.139 Sum_probs=96.5
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCc--------------cceEEEEECCEEEEEecCCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSAR--------------SYASAAMLNGELYIFGGGDGN 457 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R--------------~~~s~v~~~~~IyV~GG~~~~ 457 (680)
+..+.+++..++.|+.+ ..+.+||..++.....-...... ...+++...+..++.|+.+
T Consensus 154 ~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 226 (425)
T 1r5m_A 154 SVKWNKDGTHIISMDVE-----NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-- 226 (425)
T ss_dssp EEEECTTSSEEEEEETT-----CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG--
T ss_pred EEEECCCCCEEEEEecC-----CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--
Confidence 45555567677777654 34788888877654332222111 0222333333345566644
Q ss_pred CccceEEEEeCCCCcEEECCCCCCCCcc-cEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEE
Q 005735 458 SWHNTVESYSPANDEWTSRPSLNGTKGS-LAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAA 535 (680)
Q Consensus 458 ~~~~~v~vyD~~t~~W~~l~~lp~~r~~-~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~ 535 (680)
..+.+||..+.+-... +...... .+.+.. ++++++.|+.++ .+.+||+.+.+....-.. ......++
T Consensus 227 ---g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-~~~~i~~~ 295 (425)
T 1r5m_A 227 ---GAIFVYQITEKTPTGK--LIGHHGPISVLEFNDTNKLLLSASDDG-----TLRIWHGGNGNSQNCFYG-HSQSIVSA 295 (425)
T ss_dssp ---GCEEEEETTCSSCSEE--ECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEECSSSBSCSEEECC-CSSCEEEE
T ss_pred ---CeEEEEEcCCCceeee--eccCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCccceEecC-CCccEEEE
Confidence 3588999887532111 1111111 122222 566677766443 477888877643211110 11112223
Q ss_pred EEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 536 AEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 536 ~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+.. ++ +++.|+.++ .+.+||..+.+-...-... ......++.. ++.+++.|+.+ ..+.+||..+..
T Consensus 296 ~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 296 SWVGDD-KVISCSMDG-----SVRLWSLKQNTLLALSIVD-GVPIFAGRISQDGQKYAVAFMD-----GQVNVYDLKKLN 363 (425)
T ss_dssp EEETTT-EEEEEETTS-----EEEEEETTTTEEEEEEECT-TCCEEEEEECTTSSEEEEEETT-----SCEEEEECHHHH
T ss_pred EECCCC-EEEEEeCCC-----cEEEEECCCCcEeEecccC-CccEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCc
Confidence 333 45 666666553 7889998876543332211 1112222222 56677777754 357888887654
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.041 Score=56.66 Aligned_cols=188 Identities=12% Similarity=0.182 Sum_probs=103.1
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCccE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGKW 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W 520 (680)
++..++.|+.++ .+.+||....++.....+........+..+ + +.+++.|+.++ .+.+||+.+++|
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~ 91 (379)
T 3jrp_A 22 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEENGRW 91 (379)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEEETTEE
T ss_pred CCCEEEEEECCC-----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC-----EEEEEEcCCCce
Confidence 456666776553 477888776666655444332233333333 2 66777777553 477899999988
Q ss_pred EEcccccccccceEEEEE--C--CEEEEEcCCCCCCcCceeEEEeCCCCcE-EEeccCCCCCceeEEEEE----------
Q 005735 521 IRTRSMLQKRFALAAAEL--N--GVLYATGGYDGNEYMNSAERFDPREHYW-TKIANMNRRRGCHSLAVL---------- 585 (680)
Q Consensus 521 ~~i~~~p~~r~~~s~~~~--~--g~Lyv~GG~~~~~~~~~v~~yD~~t~~W-~~v~~~p~~r~~~s~v~~---------- 585 (680)
..+..+........++.+ + +.++++|+.++ .+.+||..+... .............+++..
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC-----cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 776544433223333333 3 56777777654 678888876532 111111111112222222
Q ss_pred ----CCEEEEEeccCCCCCCCeEEEEeCCCC--cEEEcCCCCCCccceEEEEE--C---CEEEEEecccCCCcccceEEE
Q 005735 586 ----NGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSGEPMKLSRGYLGAAVV--K---EAIYVIGGVKNGSEIVDTVER 654 (680)
Q Consensus 586 ----~~~IyviGG~~~~~~~~~v~~yD~~t~--~W~~v~~lp~~R~~~s~v~~--~---~~lyV~GG~~~~~~~~~~ve~ 654 (680)
++.+++.|+.++ .+.+||+.+. .|..+..+.........+.+ + +.+++.|+.++. +.+
T Consensus 167 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~------i~i 235 (379)
T 3jrp_A 167 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT------CII 235 (379)
T ss_dssp ---CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC------EEE
T ss_pred cCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE------EEE
Confidence 367778887653 4778877543 45554443332333333333 3 688888876643 556
Q ss_pred EcCC
Q 005735 655 FKEG 658 (680)
Q Consensus 655 y~~~ 658 (680)
|+..
T Consensus 236 wd~~ 239 (379)
T 3jrp_A 236 WTQD 239 (379)
T ss_dssp EEES
T ss_pred EeCC
Confidence 6544
No 78
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.16 Score=50.55 Aligned_cols=233 Identities=13% Similarity=0.152 Sum_probs=109.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe-EEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV-IKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~-W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.+..+.+++.+++.|+.++ .+..++..... ...+..+............++..++.|+.+ ..+.+||..
T Consensus 63 ~~~~~~~~~~~l~~~~~dg-----~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~~~d~~ 132 (313)
T 3odt_A 63 NSVCYDSEKELLLFGGKDT-----MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWD-----KTAKVWKEG 132 (313)
T ss_dssp EEEEEETTTTEEEEEETTS-----CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEETT
T ss_pred EEEEECCCCCEEEEecCCC-----eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCC-----CCEEEEcCC
Confidence 3455566777777787653 35555544321 111111122222222333355666677655 357778733
Q ss_pred CCcEEECCCCCCCCcccEEEE-E-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcC
Q 005735 470 NDEWTSRPSLNGTKGSLAGAT-I-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG 547 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v-~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG 547 (680)
....... ... ..-.+.+. - ++..++.|+.++ .+..||.....-. ...............-++. ++.|+
T Consensus 133 ~~~~~~~-~~~--~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~-~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 133 SLVYNLQ-AHN--ASVWDAKVVSFSENKFLTASADK-----TIKLWQNDKVIKT-FSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp EEEEEEE-CCS--SCEEEEEEEETTTTEEEEEETTS-----CEEEEETTEEEEE-ECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred cEEEecc-cCC--CceeEEEEccCCCCEEEEEECCC-----CEEEEecCceEEE-EeccCcccEEEEEEcCCCe-EEEcc
Confidence 2222211 111 11112222 2 566667766543 4667773322211 1111111122222233667 66666
Q ss_pred CCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccc
Q 005735 548 YDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGY 626 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~ 626 (680)
.++ .+.+||..+.+-...-.. ......+++.. +++ ++.|+.+ ..+.+||+.+......-..+.. ..
T Consensus 203 ~dg-----~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~-~i 269 (313)
T 3odt_A 203 NDG-----LIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNGD-IVSCGED-----RTVRIWSKENGSLKQVITLPAI-SI 269 (313)
T ss_dssp TTS-----EEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSC-EEEEETT-----SEEEEECTTTCCEEEEEECSSS-CE
T ss_pred CCC-----eEEEEECCchhhhhhhhc-CCceEEEEEEecCCC-EEEEecC-----CEEEEEECCCCceeEEEeccCc-eE
Confidence 553 688999887653322111 11122233333 444 5566644 4689999988765443222221 12
Q ss_pred eEEEEE-CCEEEEEecccCCCcccceEEEEcCC-CCeEe
Q 005735 627 LGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEE 663 (680)
Q Consensus 627 ~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~ 663 (680)
.+++.. +++ ++.|+.++ .+.+|+.. ..|..
T Consensus 270 ~~~~~~~~~~-~~~~~~dg------~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 270 WSVDCMSNGD-IIVGSSDN------LVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEEECTTSC-EEEEETTS------CEEEEESCGGGCCC
T ss_pred EEEEEccCCC-EEEEeCCC------cEEEEeCCCCceee
Confidence 223322 555 55566554 48888877 55544
No 79
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.70 E-value=0.042 Score=55.85 Aligned_cols=148 Identities=12% Similarity=0.020 Sum_probs=96.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEECC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~ 477 (680)
++.+|+..|..+. +.++|+.+++-..-- ++......+++..+++||+..... +.+++||+.+.+-..-
T Consensus 64 ~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-----~~v~V~D~~Tl~~~~t- 131 (268)
T 3nok_A 64 QGHFFESTGHQGT-----LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-----GLLFTWSGMPPQRERT- 131 (268)
T ss_dssp TTEEEEEETTTTE-----EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-----CEEEEEETTTTEEEEE-
T ss_pred CCEEEEEcCCCCE-----EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-----CEEEEEECCcCcEEEE-
Confidence 7899999997543 889999988653333 444444556787899999986543 5799999998765322
Q ss_pred CCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEc---ccccccc-cceEEEEECCEEEEEcCCCCCCc
Q 005735 478 SLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT---RSMLQKR-FALAAAELNGVLYATGGYDGNEY 553 (680)
Q Consensus 478 ~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i---~~~p~~r-~~~s~~~~~g~Lyv~GG~~~~~~ 553 (680)
++.+..+.+++.-++.+|+.-| .+.+..+|+++.+-... ..-+.+. ....+...+|+||+-- + .
T Consensus 132 -i~~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv-w----~ 199 (268)
T 3nok_A 132 -TRYSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI-W----H 199 (268)
T ss_dssp -EECSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-T----T
T ss_pred -EeCCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE-C----C
Confidence 2223334566666778999854 35788999999764322 1222221 1122344589999632 2 2
Q ss_pred CceeEEEeCCCCcEEE
Q 005735 554 MNSAERFDPREHYWTK 569 (680)
Q Consensus 554 ~~~v~~yD~~t~~W~~ 569 (680)
.+.|.+.|+.+++-..
T Consensus 200 s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 200 SSDVLEIDPATGTVVG 215 (268)
T ss_dssp CSEEEEECTTTCBEEE
T ss_pred CCeEEEEeCCCCcEEE
Confidence 3589999999987443
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.093 Score=53.59 Aligned_cols=238 Identities=11% Similarity=0.091 Sum_probs=114.2
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
+..+.+++..++.|+.+ ..+.+||..++.....-.. .....+++.. ++..++.++.+.......+.+||..+
T Consensus 79 ~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 79 SIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVATWKS--PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp EEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeec--CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 44555667777777764 3588899887764433221 1112222222 55566666544222234577777654
Q ss_pred Cc----EEECCCCC-----CCCc--ccEEEEE--CCEEEEEccCCCCcccceEEEEeCCC-ccEEEcccccccccceEEE
Q 005735 471 DE----WTSRPSLN-----GTKG--SLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDI-GKWIRTRSMLQKRFALAAA 536 (680)
Q Consensus 471 ~~----W~~l~~lp-----~~r~--~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t-~~W~~i~~~p~~r~~~s~~ 536 (680)
.. +......+ .... ...+..+ +++.++.|+.+ ..+.+||+.+ ..-... +.........+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~~~~v~~~ 224 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDS--IDLHEKSISDM 224 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEE--EECCSSCEEEE
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEE--EecCCCceeEE
Confidence 32 21111100 0000 2222222 55666666644 3578999987 332211 11111111222
Q ss_pred EE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCC---------CCCeE
Q 005735 537 EL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSA---------MVPSI 604 (680)
Q Consensus 537 ~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~---------~~~~v 604 (680)
.+ ++.+++.|+.++ .+.+||..+......-.. ......++.. ++..+++|+.++.. ....+
T Consensus 225 ~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 297 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDT-----NSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEA 297 (369)
T ss_dssp EECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEE
T ss_pred EECCCCCEEEEecCCc-----eEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCccee
Confidence 22 566667776553 688999887665443321 1112222222 45555565543321 11257
Q ss_pred EEEeCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 605 EVYDPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 605 ~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.+||..+..=... +.........+.+ ++++++.||.++ .+.+|+..
T Consensus 298 ~~~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg------~v~iw~~~ 345 (369)
T 3zwl_B 298 RFYHKIFEEEIGR--VQGHFGPLNTVAISPQGTSYASGGEDG------FIRLHHFE 345 (369)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTS------EEEEEEEC
T ss_pred EEEecCCCcchhh--eecccCcEEEEEECCCCCEEEEEcCCC------eEEEEECc
Confidence 8888776543221 1111122222333 677888887654 46666654
No 81
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.47 E-value=0.21 Score=53.50 Aligned_cols=243 Identities=10% Similarity=-0.005 Sum_probs=125.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
+..|+..+...+......++++|........+.... ....+++.. +++.+++++..+. ...++++|..+++...+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES--SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC--CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEe
Confidence 344444443322222357888998765544442211 111222222 5666666665432 25799999999887665
Q ss_pred CCCCCCCcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCC
Q 005735 477 PSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGN 551 (680)
Q Consensus 477 ~~lp~~r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~ 551 (680)
...+. ...+..+ +|+ |++.+..++ ...++.+|+.+++...+..... ......+ +++.+++++...
T Consensus 219 ~~~~~---~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~~- 288 (415)
T 2hqs_A 219 ASFPR---HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQA- 288 (415)
T ss_dssp ECCSS---CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECTT-
T ss_pred ecCCC---cccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECCC-
Confidence 43321 2222223 555 544443332 2468999999888765543221 1122233 555444443211
Q ss_pred CcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEE
Q 005735 552 EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAA 630 (680)
Q Consensus 552 ~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v 630 (680)
-...++++|..++....+... ......++.. +++.+++++.++. ...++++|+.+.....+..-. ...+.+
T Consensus 289 -g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~~---~~~~~~ 360 (415)
T 2hqs_A 289 -GRPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSSTF---LDETPS 360 (415)
T ss_dssp -SSCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCSS---SCEEEE
T ss_pred -CCcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCCC---CcCCeE
Confidence 124789999988775554321 1222222222 5554445443321 346899999998887664332 222222
Q ss_pred EE-CCEEEEEecccCCCcccceEEEEcCC-CCeEecc
Q 005735 631 VV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEIN 665 (680)
Q Consensus 631 ~~-~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~ 665 (680)
.. +++.+++++.+.+ ...+++++.. .....+.
T Consensus 361 ~spdg~~l~~~s~~~~---~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp ECTTSSEEEEEEEETT---EEEEEEEETTSCCEEECC
T ss_pred EcCCCCEEEEEEcCCC---ccEEEEEECCCCcEEEee
Confidence 22 6677777765442 2468888876 4445543
No 82
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.46 E-value=0.48 Score=48.53 Aligned_cols=186 Identities=9% Similarity=0.085 Sum_probs=92.3
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcc-cEEEE-
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGS-LAGAT- 490 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~-~a~~v- 490 (680)
-.++.+|..++++..+...........++.. +++||+.+.... ...+++||..+++++.+..+...... ...+.
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~---~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD---EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT---EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC---CceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 3478889988888765322222222223322 677887764211 24688999988887665442211111 22222
Q ss_pred ECCE-EEEEccCCCCcccceEEEEeCC-CccEEEcccccc------cc---cceEEEEE--CCEEEEEcCCCCCCcCcee
Q 005735 491 IDNK-IFAIGGGNGLECFSDVEMLDLD-IGKWIRTRSMLQ------KR---FALAAAEL--NGVLYATGGYDGNEYMNSA 557 (680)
Q Consensus 491 ~~gk-IyV~GG~~~~~~~~~ve~yD~~-t~~W~~i~~~p~------~r---~~~s~~~~--~g~Lyv~GG~~~~~~~~~v 557 (680)
-+++ +|+.+..+ ..+.+||+. +++...+..... .| .....+.+ ++++|+.+..+ ..+
T Consensus 95 pdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-----~~v 164 (347)
T 3hfq_A 95 EARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-----DKV 164 (347)
T ss_dssp TTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-----TEE
T ss_pred CCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-----CEE
Confidence 2454 66664322 356778874 334433321111 11 11222333 56777765332 368
Q ss_pred EEEeCC-CCcEEEecc--CCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCC--CCcEEEc
Q 005735 558 ERFDPR-EHYWTKIAN--MNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPR--LGSWMSG 617 (680)
Q Consensus 558 ~~yD~~-t~~W~~v~~--~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~--t~~W~~v 617 (680)
.+||.. ++....+.. .+.......++.. +++ +|+.+..+ ..+.+|+.. +..+..+
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEe
Confidence 888887 566655432 2222122223332 454 77765432 345555544 5666543
No 83
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.44 E-value=0.077 Score=55.61 Aligned_cols=229 Identities=12% Similarity=0.118 Sum_probs=109.8
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC--CC-ccceEEEEE-CCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS--SA-RSYASAAML-NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp--~~-R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
+....+++.+++ |+.+ ..+.+||..++.-....... .. ..-.+++.. +++.++.|+.++ .+.+||
T Consensus 99 ~~~~s~d~~~l~-~s~d-----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd 167 (357)
T 4g56_B 99 DVAWVSEKGILV-ASDS-----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWD 167 (357)
T ss_dssp EEEEETTTEEEE-EETT-----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEE
T ss_pred EEEEcCCCCEEE-EECC-----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEE
Confidence 345556777665 4433 24777887765432221111 11 111222222 667777787653 588899
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE---CCE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL---NGV 541 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~---~g~ 541 (680)
..+++-... +........++.+ ++ .+++.||.++ .+.+||+.+.+-..............++.+ ++.
T Consensus 168 ~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 168 LSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGEDG-----RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp TTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETTS-----CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred CCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccCC-----ceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 888764322 1111111122222 33 4666666543 467888887653222222212222223333 456
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-C-CEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-N-GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~-~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
+++.|+.++ .+.+||..+.+-...-.. ......+++.. + +++++.|+.++ .|.+||.++.+-...-
T Consensus 241 ~la~g~~d~-----~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~-----~i~iwd~~~~~~~~~~- 308 (357)
T 4g56_B 241 TFACGDETG-----NVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDC-----TVAVLDADFSEVFRDL- 308 (357)
T ss_dssp EEEEEESSS-----CEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTS-----CEEEECTTSCEEEEEC-
T ss_pred eEEEeeccc-----ceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCC-----EEEEEECCCCcEeEEC-
Confidence 777777654 578899876542211111 11112222222 3 45666676553 4889999887654432
Q ss_pred CCCCccceEEEE--ECCEEEEEecccCCCcccceEEEEcC
Q 005735 620 MKLSRGYLGAAV--VKEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 620 lp~~R~~~s~v~--~~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.....-.+++. .++.+++.||.++. |.+|+.
T Consensus 309 -~H~~~V~~vafsP~d~~~l~s~s~Dg~------v~iW~~ 341 (357)
T 4g56_B 309 -SHRDFVTGVAWSPLDHSKFTTVGWDHK------VLHHHL 341 (357)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSC------EEEEEC
T ss_pred -CCCCCEEEEEEeCCCCCEEEEEcCCCe------EEEEEC
Confidence 11112223332 25778888887653 667764
No 84
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.39 Score=49.28 Aligned_cols=232 Identities=15% Similarity=0.192 Sum_probs=112.4
Q ss_pred EEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC-C-CccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC-----
Q 005735 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS-S-ARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND----- 471 (680)
Q Consensus 401 Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp-~-~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~----- 471 (680)
+++.||.+ ..+.+||..++.+..+..+. . ....-..+.+ ++.+++.|+.++ .+.+||....
T Consensus 26 ~las~~~D-----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 26 ILATGSTD-----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTF 95 (330)
T ss_dssp EEEEEESS-----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------C
T ss_pred EEEEEcCC-----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccc
Confidence 67777754 34777888775443332221 1 1112222223 567777787653 4677776432
Q ss_pred cEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCC--ccEEEcccccccccceEEEEE--CCEEEEE
Q 005735 472 EWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDI--GKWIRTRSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t--~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
.+..+..+..-...-.++.+ +++.++.|+.++ .+.+||+.. ..+..+..+.........+.+ ++.+++.
T Consensus 96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~-----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK-----SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp CCEEEEEEC----CEEEEEECTTSCEEEEEETTS-----CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 12211111111111112222 567777776553 466888743 234433322221112222333 5677777
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCC-ceeEEEEE-C--CEEEEEeccCCCCCCCeEEEEeCCC------CcEE
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRR-GCHSLAVL-N--GKLYALGGFDGSAMVPSIEVYDPRL------GSWM 615 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r-~~~s~v~~-~--~~IyviGG~~~~~~~~~v~~yD~~t------~~W~ 615 (680)
|+.++ .+.+||..+..|..+..+.... ...++... + +..++.|+.++ .+.+||+.. ..|.
T Consensus 171 ~s~D~-----~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 171 SSYDD-----TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp EETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEE
T ss_pred EcCCC-----eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeE
Confidence 87764 5778888777777665543222 22222222 2 34566676553 355666532 2465
Q ss_pred EcCCCCC--CccceEEEEECCEEEEEecccCCCcccceEEEEcCC-CCeEe
Q 005735 616 SGEPMKL--SRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEE 663 (680)
Q Consensus 616 ~v~~lp~--~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~ 663 (680)
.+..++. ...-.+++...+.+++.||.++ .+.+|+.. ..|..
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~ 285 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKV 285 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEE
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEE
Confidence 5444432 1222233333455667777554 36666654 45643
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.39 Score=51.59 Aligned_cols=247 Identities=10% Similarity=0.027 Sum_probs=119.5
Q ss_pred ceEEEcCCCEE-EEEecCCCCcccCeEEEEeCC--CCeE-EEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEE
Q 005735 391 DELHLDPSESI-YLVGGCDGDSWLSTLELYLPS--CDVI-KTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 391 ~~~~v~~~~~I-yv~GG~~~~~~~~~v~~yd~~--t~~W-~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~v 465 (680)
.+..+.+++.. ++.|+.+ ..+.+||.. ++.. ..+.....+....+++.. ++..++.|+.+ ..++.
T Consensus 106 ~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-----g~v~~ 175 (450)
T 2vdu_B 106 RNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-----GDVYS 175 (450)
T ss_dssp EEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-----CcEEE
Confidence 34555566655 5777754 346777766 4432 222110111111222222 56666667653 35788
Q ss_pred EeCCCCcEEE--CCCCCCCCccc-EE-EEEC---CEEEEEccCCCCcccceEEEEeCCCccEEEc-ccccccccceEEEE
Q 005735 466 YSPANDEWTS--RPSLNGTKGSL-AG-ATID---NKIFAIGGGNGLECFSDVEMLDLDIGKWIRT-RSMLQKRFALAAAE 537 (680)
Q Consensus 466 yD~~t~~W~~--l~~lp~~r~~~-a~-~v~~---gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~~~p~~r~~~s~~~ 537 (680)
++..+..... ...+....... ++ ..-+ +++++.|+.+ ..+.+||+.+++.... ..-........+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence 8876654321 00111111111 22 2226 7788887755 3577888887654322 10011111111222
Q ss_pred ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC------------------------CCCCceeEEEEE-CCEEEEE
Q 005735 538 LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM------------------------NRRRGCHSLAVL-NGKLYAL 592 (680)
Q Consensus 538 ~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~------------------------p~~r~~~s~v~~-~~~Iyvi 592 (680)
++.+++.|+.++ .+.+||..+++....-.. ........++.. ++..+++
T Consensus 251 -d~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 251 -KDYLLLSAGGDD-----KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp -STTEEEEEESSS-----EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred -CCCEEEEEeCCC-----eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 777778887653 788999988764433211 001111222222 3444444
Q ss_pred eccCCCCCCCeEEEEeC--C-CCcEEEcCCCCCCccceEEEEECCEEEEEecccCC-C--cccceEEEEcCC-CCeE
Q 005735 593 GGFDGSAMVPSIEVYDP--R-LGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNG-S--EIVDTVERFKEG-QGWE 662 (680)
Q Consensus 593 GG~~~~~~~~~v~~yD~--~-t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~-~--~~~~~ve~y~~~-~~W~ 662 (680)
++.. -..+.+||. . ...+..+..+.......+++...+.+++..+.... + ...-.++.++.. +.|.
T Consensus 325 ~~~~----d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 325 FVEA----TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EETT----CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EECC----CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 4321 245788887 3 34566555444443344555566777777654321 1 222345555655 6674
No 86
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.42 E-value=0.11 Score=55.52 Aligned_cols=218 Identities=13% Similarity=0.133 Sum_probs=106.7
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++.+++.||.++ .+.+||..+..... .+.........+.+ ++..++.|+.+ ..+.+||..
T Consensus 155 ~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~ 222 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADM-----TIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQ 222 (410)
T ss_dssp EEEECTTSSEEEEEETTS-----CCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECC
Confidence 445556777888888653 35667776654322 22222222223333 56667777765 368889988
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE----------
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE---------- 537 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~---------- 537 (680)
+..-... +........++.+ ++.+++.|+.++ .+.+||..+......- ........++.
T Consensus 223 ~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~-----~v~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 223 TGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQ-----TVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp TCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGG
T ss_pred CCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCceeeEe--cCCCceEEEEEEcCcccccch
Confidence 7653221 1111111122222 567777777553 4667787766543210 00000000111
Q ss_pred ------------ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeE
Q 005735 538 ------------LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSI 604 (680)
Q Consensus 538 ------------~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v 604 (680)
..+.+++.|+.++ .+.+||..++.-...-. .......+++.. ++..++.||.+ ..|
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D~-----~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D-----~~i 362 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRDK-----TIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADD-----KTL 362 (410)
T ss_dssp GGCCSCC-------CCEEEEEETTS-----EEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETT-----TEE
T ss_pred hhhccccccccCCCCCEEEEEeCCC-----eEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCC-----CeE
Confidence 1255677777654 68899988765322111 111122222222 56666677754 357
Q ss_pred EEEeCCCCc-EEEcCCCCCCccceEEEEE--CCEEEEEecccC
Q 005735 605 EVYDPRLGS-WMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 605 ~~yD~~t~~-W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
.+||..+.. ...+. ........+.+ ++.+++.|+.++
T Consensus 363 ~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 363 RVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp EEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETTS
T ss_pred EEEECCCCceEEEEc---CCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 888886543 22221 11111222223 455677777654
No 87
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.41 E-value=0.11 Score=54.72 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=113.4
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
..+.+++..++.|+.+ ..+.+||..+... ...+... ....+... ++.+++.|+.++ .+.+||..+
T Consensus 62 ~~~s~~g~~l~~~~~d-----~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 128 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLD-----GHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKLQMRRFILGTTEG-----DIKVLDSNF 128 (420)
T ss_dssp CEEEEEETTEEEEEET-----TEEEEEECCSEET--TTTSCSC-CEEEEEEECSSSCEEEEEETTS-----CEEEECTTS
T ss_pred eeeeecCCeEEEEEcC-----CcEEEEEecccce--eeEEecC-CceEEEEEecCCCEEEEEECCC-----CEEEEeCCC
Confidence 3344455566666654 3678888765432 2222222 22222222 677788887653 588899887
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc-cceEEEEE-CCEEEEEc
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR-FALAAAEL-NGVLYATG 546 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r-~~~s~~~~-~g~Lyv~G 546 (680)
.+-...- ........++.+ ++++++.|+.+ ..+.+||+.+.+-. ..+.... ...+++.. ++..++.|
T Consensus 129 ~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 129 NLQREID--QAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGSNP--RTLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp CEEEEET--TSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCCC--EEEECCSSCEEEEEEETTTTEEEEE
T ss_pred cceeeec--ccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCcCc--eEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 6543321 111112222222 56677777654 35788998876421 1111111 11222222 56666777
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEeccCC--CCCceeEEEE----------------------ECCEEEEEeccCCCCCCC
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKIANMN--RRRGCHSLAV----------------------LNGKLYALGGFDGSAMVP 602 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v~~~p--~~r~~~s~v~----------------------~~~~IyviGG~~~~~~~~ 602 (680)
+.++ .+.+||..+.+-...-... .......++. -++.+++.|+.++
T Consensus 200 ~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 269 (420)
T 3vl1_A 200 SLDG-----TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG----- 269 (420)
T ss_dssp ETTS-----CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----
T ss_pred cCCC-----cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----
Confidence 7654 5788998876543332111 1111111111 1567777777543
Q ss_pred eEEEEeCCCCcEEEcCCCCCCccceEEEEE-CCE-EEEEecccCCCcccceEEEEcCC
Q 005735 603 SIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEA-IYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 603 ~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~~-lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.+.+||+.+..-...-.........+++.. ++. +++.|+.++ .+.+|+..
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg------~i~vwd~~ 321 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG------MLAQWDLR 321 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS------EEEEEETT
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC------eEEEEEcC
Confidence 488999987653322111111112222222 344 677776543 36666654
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.38 E-value=0.47 Score=49.99 Aligned_cols=180 Identities=16% Similarity=0.266 Sum_probs=95.9
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEEC
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATID 492 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~ 492 (680)
..+.+||..++.............-.+++.. ++.+++.|+.++ .+.+||..+.+.... +........+..++
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRT--MAGHQARVGCLSWN 185 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEEE
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEE--ecCCCCceEEEEEC
Confidence 3589999998887655443322222333332 566777777653 588899887754322 11222223334446
Q ss_pred CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 493 NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 493 gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
+.+++.|+.+ ..+.+||+....-.. ..+.........+.+ ++.+++.|+.++ .+.+||..+..-...
T Consensus 186 ~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~ 254 (401)
T 4aez_A 186 RHVLSSGSRS-----GAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDARSSIPKFT 254 (401)
T ss_dssp TTEEEEEETT-----SEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCSSEEEE
T ss_pred CCEEEEEcCC-----CCEEEEecccCccee-eEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccCCCCCccEE
Confidence 6777777655 357788887433111 111111111122222 667778887664 688999887543322
Q ss_pred ccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 571 ANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 571 ~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
-. .......+++.. +..+++.||.. .-..+.+||..+..-.
T Consensus 255 ~~-~~~~~v~~~~~~p~~~~ll~~~~gs---~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 255 KT-NHNAAVKAVAWCPWQSNLLATGGGT---MDKQIHFWNAATGARV 297 (401)
T ss_dssp EC-CCSSCCCEEEECTTSTTEEEEECCT---TTCEEEEEETTTCCEE
T ss_pred ec-CCcceEEEEEECCCCCCEEEEecCC---CCCEEEEEECCCCCEE
Confidence 11 111222233333 44677776411 1246889998876543
No 89
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.35 E-value=0.11 Score=53.90 Aligned_cols=180 Identities=13% Similarity=0.184 Sum_probs=97.3
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCc-ccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKG-SLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~-~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
++.+++.||.++ .+.+||..+++|.....+..... ...++.+ +++.++.|+.++ .+.+||..+..+.
T Consensus 27 ~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 27 AGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDFE 96 (345)
T ss_dssp TSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-EE
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCeE
Confidence 677777887653 57788888887753322211111 1222222 677777777653 3567887777665
Q ss_pred EcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCC-cEEEeccCCCCCceeEEEEE--CCEEEEEeccC
Q 005735 522 RTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREH-YWTKIANMNRRRGCHSLAVL--NGKLYALGGFD 596 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~-~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~ 596 (680)
.+..+.........+.+ ++.+++.|+.++ .+.+||..+. .+..+..+.........+.+ ++.+++.|+.+
T Consensus 97 ~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 54433322222222333 567778887664 5778887654 34433332221111222222 56677777765
Q ss_pred CCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEecccC
Q 005735 597 GSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 597 ~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
+ .+.+||..+..|..+..+.........+.+ +++.++.|+.++
T Consensus 172 ~-----~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 172 D-----TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp S-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred C-----cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 3 478899888888754433322222222233 566677776554
No 90
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.35 E-value=0.17 Score=51.36 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=79.9
Q ss_pred cCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-C-CEEEEEecCCCCCccceEEEEeCCCCcE
Q 005735 396 DPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-N-GELYIFGGGDGNSWHNTVESYSPANDEW 473 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~-~~IyV~GG~~~~~~~~~v~vyD~~t~~W 473 (680)
..++.+|+.++.+ ..++++|+.+++....-..+.....+.++.. + ..+|+.+... ..+++||+.+++.
T Consensus 8 ~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 8 KAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN 77 (349)
T ss_dssp CTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred cCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcE
Confidence 3477888888753 4689999998876543222221122334333 3 4678776433 4689999998765
Q ss_pred EECCCCCCC-----CcccEEEEE-CCE-EEEEccC---CCCc---ccceEEEEeCCCccEEE-cccccccccceEEEE-E
Q 005735 474 TSRPSLNGT-----KGSLAGATI-DNK-IFAIGGG---NGLE---CFSDVEMLDLDIGKWIR-TRSMLQKRFALAAAE-L 538 (680)
Q Consensus 474 ~~l~~lp~~-----r~~~a~~v~-~gk-IyV~GG~---~~~~---~~~~ve~yD~~t~~W~~-i~~~p~~r~~~s~~~-~ 538 (680)
...-..+.. ..-...+.. +++ +|+.+.. .... ....+.+||+.+++-.. +.....+....+++. -
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 432222110 111222332 554 5554321 0000 12578899998754211 111111222222222 2
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
++++|+.++ .+++||+.+.+...
T Consensus 158 dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 158 DGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp TSCEEEESS--------SEEEECTTTCCEEE
T ss_pred CCcEEEccC--------cEEEEeCCCCceec
Confidence 566777432 38888887766443
No 91
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.34 E-value=0.072 Score=52.31 Aligned_cols=207 Identities=12% Similarity=0.039 Sum_probs=108.7
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCC-CeEEEcCCCCCCccceEEEE-ECCEEEEEecCCCCCccceEEEEe
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSC-DVIKTLKPMSSARSYASAAM-LNGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t-~~W~~l~~mp~~R~~~s~v~-~~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
..+..+.+++..+++++. ..++++|..+ +....+...........++. -+++.+++++.... ....++.++
T Consensus 44 v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~ 116 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF-GKSAIYLLP 116 (297)
T ss_dssp CEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEE
T ss_pred eEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC-CcceEEEEE
Confidence 445677777877777752 3699999998 77766654332222222222 25555555553321 235788999
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE-CCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCE-E
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI-DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGV-L 542 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~-~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~-L 542 (680)
..+.....+..... ....+.. +++ |++.++.++ ...++.+|..++....+...+... ....+ +++ |
T Consensus 117 ~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~l 187 (297)
T 2ojh_A 117 STGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLTHGEGRN---DGPDYSPDGRWI 187 (297)
T ss_dssp TTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECCCSSSCE---EEEEECTTSSEE
T ss_pred CCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcccCCCcc---ccceECCCCCEE
Confidence 88776555533221 2222222 454 544444332 135677778777766554332211 22222 454 4
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCC------CCCeEEEEeCCCCcE
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSA------MVPSIEVYDPRLGSW 614 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~------~~~~v~~yD~~t~~W 614 (680)
++.+..++ ...+|.++........+.... .....+.+ +++.+++++.++.. ....++++|+.++..
T Consensus 188 ~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 188 YFNSSRTG---QMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEECTTS---SCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred EEEecCCC---CccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 44443332 246788887777766654322 12222222 55544444433211 124689999988776
Q ss_pred EEcC
Q 005735 615 MSGE 618 (680)
Q Consensus 615 ~~v~ 618 (680)
..+.
T Consensus 262 ~~~~ 265 (297)
T 2ojh_A 262 ETLF 265 (297)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5543
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.31 E-value=0.59 Score=47.10 Aligned_cols=230 Identities=16% Similarity=0.118 Sum_probs=112.9
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
+..+.+++.+++.|+.++ .+..++.........................+..++.|+.++ .+.++|....
T Consensus 91 ~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~ 160 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGV 160 (340)
T ss_dssp EEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSC
T ss_pred EEEECCCCCEEEEEcccc-----cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCC
Confidence 455666778888888653 466777777665444322222222222222455666676553 4667776654
Q ss_pred cEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEE
Q 005735 472 EWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
.-...... ........+.+ .+.+++.|+.++ .+.+||..+.+....-.-.. ....++.+ ++.+++.
T Consensus 161 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 161 CKYTVQDE-SHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EEEEECSS-SCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEE
T ss_pred ceEEEEec-cccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEE
Confidence 32222111 11111122222 234566665442 46788888776433211111 11122222 5677888
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEE-cCCC--C-
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-GEPM--K- 621 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~-v~~l--p- 621 (680)
|+.++ .+.+||..+..-... +........++...+..++.++.+ ..+.+||.++..-.. +... .
T Consensus 233 ~s~Dg-----~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 233 GGKDG-----QAMLWDLNEGKHLYT--LDGGDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EETTC-----EEEEEETTTTEEEEE--EECSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCC----
T ss_pred EeCCC-----eEEEEEeccCceeee--ecCCceEEeeecCCCCceeeccCC-----CEEEEEECCCCeEEEeccccceee
Confidence 87764 678899877543322 222222223333334445555543 457888987765432 1110 0
Q ss_pred ---CCccceEEEEE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 622 ---LSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 622 ---~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
........+.+ +++.++.||.++ .|.+|+.
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg------~v~iW~~ 335 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTDN------LVRVWQV 335 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTS------CEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCCC------EEEEEeC
Confidence 01111122223 567778887664 3666654
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.29 E-value=0.22 Score=50.82 Aligned_cols=104 Identities=10% Similarity=0.143 Sum_probs=58.2
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCcc-ceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARS-YASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~-~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
+.+++.|+.++ .+.+||..++.-... +..... -.+++.. ++.+++.|+.++ .+.+||..+.+-..
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVA 152 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred CCEEEEecCCC-----EEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEE
Confidence 67888888653 688899887653322 111111 2222222 567777787653 58899998876433
Q ss_pred C-CCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 476 R-PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 476 l-~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
. ..+........++.+ ++..++.|+.+ ..+.+||+.+.+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 194 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR 194 (366)
T ss_dssp EECSTTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred EecccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence 2 111222222222333 46666777654 357788888654
No 94
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.25 E-value=0.3 Score=50.83 Aligned_cols=223 Identities=17% Similarity=0.222 Sum_probs=108.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcC----CCCCCccceEEEEE--CCEEEEEecCCCCCccceEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLK----PMSSARSYASAAML--NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~----~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~ 464 (680)
..+...+++..++.||.++ .+.+|+.....-.... .+.........+.+ ++..++.|+.+ ..+.
T Consensus 110 ~~~~~sp~g~~lasg~~d~-----~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-----~~v~ 179 (354)
T 2pbi_B 110 MACAYAPSGCAIACGGLDN-----KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-----GTCA 179 (354)
T ss_dssp CEEEECTTSSEEEEESTTS-----EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-----SEEE
T ss_pred EEEEECCCCCEEEEeeCCC-----CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-----CcEE
Confidence 3455666777777777653 4555655432100000 00001111122222 44455566554 3688
Q ss_pred EEeCCCCcEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--
Q 005735 465 SYSPANDEWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-- 538 (680)
Q Consensus 465 vyD~~t~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-- 538 (680)
++|..+.+-... +........+..+ ++..++.|+.++ .+..||+.+++....-... .....++.+
T Consensus 180 lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p 250 (354)
T 2pbi_B 180 LWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSGQCVQAFETH--ESDVNSVRYYP 250 (354)
T ss_dssp EEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTCCEEEEECCC--SSCEEEEEECT
T ss_pred EEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCcEEEEecCC--CCCeEEEEEeC
Confidence 899887754221 1100111111222 356777777653 4778998887643321111 111122233
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
++.+++.|+.++ .+.+||..+..-..+-...........+.+ ++.+++.|+.+ ..+.+||..+..-.
T Consensus 251 ~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----~~i~vwd~~~~~~~- 319 (354)
T 2pbi_B 251 SGDAFASGSDDA-----TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-----YTINVWDVLKGSRV- 319 (354)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEE-
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCceE-
Confidence 567777787664 578899887653332221111122223333 56777777754 35889998665422
Q ss_pred cCCCCCCccceEEEEE--CCEEEEEecccC
Q 005735 617 GEPMKLSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 617 v~~lp~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
..+.........+.+ +++.++.|+.++
T Consensus 320 -~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 320 -SILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp -EEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -EEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 112111122222233 667777777654
No 95
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.25 E-value=0.16 Score=54.40 Aligned_cols=207 Identities=11% Similarity=0.025 Sum_probs=114.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCE-EEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGE-LYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~-IyV~GG~~~~~~~~~v~vyD~ 468 (680)
....+.+++..+++++.++. ...++++|..+++...+...+. ...+++.. +++ |++.+..++ ...++++|.
T Consensus 182 ~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~ 254 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDL 254 (415)
T ss_dssp EEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS---SCEEEEEET
T ss_pred eeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC---CceEEEEEC
Confidence 34566667777777765432 2579999999988776654322 22222222 444 554554332 246999999
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYA 544 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv 544 (680)
.+.+...+.... .......+ +++.+++++... ....++.+|+.+++-..+.... ... ..+.+ +++.++
T Consensus 255 ~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~~~--~~~-~~~~~spdG~~l~ 326 (415)
T 2hqs_A 255 ASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITWEG--SQN-QDADVSSDGKFMV 326 (415)
T ss_dssp TTCCEEECCCCS---SCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCCSS--SEE-EEEEECTTSSEEE
T ss_pred CCCCEEeCcCCC---CcccceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEecCC--Ccc-cCeEECCCCCEEE
Confidence 998876664422 12222233 566444444211 1246888999887754443211 111 12222 555444
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
+++.+.. ...++++|+.+++...+.... .....+.. +++.+++++.++. ...++++|+..+....+..
T Consensus 327 ~~~~~~g--~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 327 MVSSNGG--QQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEECSS--CEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECCC
T ss_pred EEECcCC--ceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEeeC
Confidence 4443211 347899999998887664332 22222222 5666666654322 2368999998777766643
No 96
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.24 E-value=1.1 Score=46.18 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=58.1
Q ss_pred CCEEEEEecCCC-CcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEE
Q 005735 398 SESIYLVGGCDG-DSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWT 474 (680)
Q Consensus 398 ~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~ 474 (680)
+...+++|.+.. ....-.++.+|+.++++..+... .......++.. +..||+.+........-.+|.++..+++.+
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 344566777653 22223466678888888776544 22222222222 345777665321111223456666667776
Q ss_pred ECCCCCCCCcccEEEEECCE-EEEEccCCCCcccceEEEEeCCCc
Q 005735 475 SRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~~gk-IyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
.+...+..........++++ +|+.+.. ...+.+|++...
T Consensus 91 ~~~~~~~~~~~p~~~~~dg~~l~~~~~~-----~~~v~~~~~~~~ 130 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTTNGKNIVTANYS-----GGSITVFPIGQD 130 (361)
T ss_dssp EEEEEECSSSCEEEEEECSSEEEEEETT-----TTEEEEEEBCTT
T ss_pred EeeEeccCCCCcEEEEECCCEEEEEECC-----CCEEEEEEeCCC
Confidence 66544322222222223665 6665432 245778887643
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.24 E-value=0.42 Score=50.22 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=97.0
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEE--EcCCCCCCccceEEEEE---CCEEEEEecCCCCCccceEEEEe
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIK--TLKPMSSARSYASAAML---NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~--~l~~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
....++...+++.|..+ ..+.+||.....-. .+..+......-..+.+ ++.+++.|+.+ ..+.+||
T Consensus 40 ~~~~~~~~~~~~~~~~~----g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG----GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-----CTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSS----CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-----SEEEEEE
T ss_pred EEECCCeEEEEEEEcCC----CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEEE
Confidence 44444444455433221 34788887543211 11112122222222333 56778888765 3588888
Q ss_pred CCCCcEEE-----CCCCCCCCcccEEEEE--CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-
Q 005735 468 PANDEWTS-----RPSLNGTKGSLAGATI--DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL- 538 (680)
Q Consensus 468 ~~t~~W~~-----l~~lp~~r~~~a~~v~--~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~- 538 (680)
..++.... +..+........++.+ ++ .+++.|+.++ .+.+||+.+++....-..........++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN-----VILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS-----CEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC-----EEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 88764311 1111111111122222 33 4777776553 477999988765432210111111222233
Q ss_pred -CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec-cCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 539 -NGVLYATGGYDGNEYMNSAERFDPREHYWTKIA-NMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 539 -~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++.+++.|+.++ .+.+||+.+.+-...- ..........++. -++.+++.|.... .-..+.+||+.+.
T Consensus 186 ~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 186 RDGALICTSCRDK-----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHL 255 (402)
T ss_dssp TTSSCEEEEETTS-----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBC
T ss_pred CCCCEEEEEecCC-----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccc
Confidence 667777777653 6899999887644332 1111111222222 3677777762110 1246889998764
No 98
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=96.22 E-value=0.32 Score=55.81 Aligned_cols=219 Identities=9% Similarity=0.012 Sum_probs=117.6
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCC--------Ccc
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGN--------SWH 460 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~--------~~~ 460 (680)
.....+.++++.++++...+......++++|..++.......++.... ..++.. +++.++++..+.. ...
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 345566777777776654333334679999999987641112222221 222222 6666666655432 234
Q ss_pred ceEEEEeCCCCcE--EECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEE
Q 005735 461 NTVESYSPANDEW--TSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAA 536 (680)
Q Consensus 461 ~~v~vyD~~t~~W--~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~ 536 (680)
..+++++..+..- ..+...+..........+ +|+.++++..... ..+.++.+|..++.|..+..-..... ..+
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~ 278 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGVGAKY--EVH 278 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECSSCCE--EEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCCCceE--EEE
Confidence 5689999887652 222222221112222222 5664444432221 34577888887778877654322222 222
Q ss_pred EECCEEEEEcCCCCCCcCceeEEEeCCCCc---EEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 537 ELNGVLYATGGYDGNEYMNSAERFDPREHY---WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~---W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
..+|.+|+....+ .....++++|+.+.. |+.+-..........+...++.|++....++ ...++++++..+.
T Consensus 279 ~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 279 AWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDA---TSEVRVATLKGKP 353 (695)
T ss_dssp EETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETT---EEEEEEEETTCCE
T ss_pred ecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECC---EEEEEEEeCCCCe
Confidence 3566666654432 223578999987754 8877543222222334445888888776543 3468888876554
Q ss_pred EEEc
Q 005735 614 WMSG 617 (680)
Q Consensus 614 W~~v 617 (680)
-..+
T Consensus 354 ~~~l 357 (695)
T 2bkl_A 354 VRTV 357 (695)
T ss_dssp EEEC
T ss_pred eEEe
Confidence 4444
No 99
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.21 E-value=0.4 Score=54.59 Aligned_cols=188 Identities=15% Similarity=0.081 Sum_probs=95.2
Q ss_pred cceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCc-cEEEccccccccc----c
Q 005735 460 HNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIG-KWIRTRSMLQKRF----A 532 (680)
Q Consensus 460 ~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i~~~p~~r~----~ 532 (680)
...++++|..+.+-..+............+.+ +++.++++..+.......+..+|+.++ .+..+........ .
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 35799999998876665432111222223333 666444444333334457899999998 6655432111110 1
Q ss_pred eEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CC-EEEEEeccCCCCCCCeEEEE
Q 005735 533 LAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NG-KLYALGGFDGSAMVPSIEVY 607 (680)
Q Consensus 533 ~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~-~IyviGG~~~~~~~~~v~~y 607 (680)
.....- ++++++.+..++ ...+|.+|........+..-... ......+ ++ .||+.+..+ ......++.+
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~~~~--v~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~ 387 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKGEWE--VTNFAGFDPKGTRLYFESTEA-SPLERHFYCI 387 (706)
T ss_dssp CCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCSSSC--EEEEEEECTTSSEEEEEESSS-CTTCBEEEEE
T ss_pred CceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCCCeE--EEeeeEEcCCCCEEEEEecCC-CCceEEEEEE
Confidence 112222 677666665443 35788888777666666432111 1221233 34 566555432 2223578999
Q ss_pred eCCCCcEEEcCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC
Q 005735 608 DPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 608 D~~t~~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
|..+.....+.. ....+.++.- +++.+++...+. .....+++++..
T Consensus 388 d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~ 434 (706)
T 2z3z_A 388 DIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIG 434 (706)
T ss_dssp ETTCCCCEESCC---SSSEEEEEECTTSSEEEEEEECS--SCSCEEEEEESS
T ss_pred EcCCCCceeccC---CCceEEEEECCCCCEEEEEecCC--CCCcEEEEEECC
Confidence 998877666642 2222332222 455555543322 112345666544
No 100
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.19 E-value=0.37 Score=53.23 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=117.9
Q ss_pred cceEEEcC--CCEEEEEecCCCCcccCeEEEEeCCCC------eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCc
Q 005735 390 SDELHLDP--SESIYLVGGCDGDSWLSTLELYLPSCD------VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSW 459 (680)
Q Consensus 390 ~~~~~v~~--~~~Iyv~GG~~~~~~~~~v~~yd~~t~------~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~ 459 (680)
..+..+.+ ++.+++.|+.++ .+.+||..++ ....+..+.........+.+ +++.++.+|.+.. .
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~ 140 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESG-----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-N 140 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTS-----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-C
T ss_pred EEEEEECcCCCCCEEEEecCCC-----EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-C
Confidence 34567777 788888888653 4777777544 33332222211112222222 5566666664421 1
Q ss_pred cceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCCCccEEEccccccccc---ce
Q 005735 460 HNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRF---AL 533 (680)
Q Consensus 460 ~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~---~~ 533 (680)
...++++|... .-..+ ........++.+ ++. +++.|+.+ ..+.+||..+.+-... +..... ..
T Consensus 141 ~~~v~~~d~~~-~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v 209 (615)
T 1pgu_A 141 FGVFISWDSGN-SLGEV---SGHSQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFV 209 (615)
T ss_dssp SEEEEETTTCC-EEEEC---CSCSSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCE
T ss_pred ccEEEEEECCC-cceee---ecCCccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceeee--ecccCCCCceE
Confidence 34577777322 11222 111112222222 343 66666644 4577888877653322 211111 12
Q ss_pred EEEEE--C-CEEEEEcCCCCCCcCceeEEEeCCCCcEEEec-cC--CCCCceeEEEEECCEEEEEeccCCCCCCCeEEEE
Q 005735 534 AAAEL--N-GVLYATGGYDGNEYMNSAERFDPREHYWTKIA-NM--NRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVY 607 (680)
Q Consensus 534 s~~~~--~-g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~-~~--p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~y 607 (680)
.++.+ + +.+++.|+.++ .+.+||..+.+....- .. .......+++..++..++.|+.+ ..+.+|
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~~w 279 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVW 279 (615)
T ss_dssp EEEEECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCC-----CcEEEE
Confidence 22233 4 67777777654 6889998877654432 10 22222222222267777777754 458899
Q ss_pred eCCCCcEEEcCCCC---CCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 608 DPRLGSWMSGEPMK---LSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 608 D~~t~~W~~v~~lp---~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
|+.+......-..+ ......+++..++..++.|+.++ .+.+|+..
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------~i~~~d~~ 327 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG------TLNFYELG 327 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS------CEEEEETT
T ss_pred ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC------CEEEEECC
Confidence 99876554322221 11122223333666777776554 36666654
No 101
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.17 E-value=0.31 Score=51.44 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=109.2
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
+..+.+++..++.|+.++ .+.+||..+++....-.... ..-.+++.. ++..++.|+.+ ..+.+||..+
T Consensus 128 ~v~~s~dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~ 196 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRT 196 (393)
T ss_dssp EEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred EEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEccCC-CCEEEEEEcCCCCEEEEecCC-----CcEEEEECCC
Confidence 455666778888887653 57889988876433211111 112222222 55566667655 3688899988
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEc-cccc---cc-ccceEEEEE--CCE
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT-RSML---QK-RFALAAAEL--NGV 541 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~~~p---~~-r~~~s~~~~--~g~ 541 (680)
.+....-... ..-.+.+.. ++++++.|+.++ .+.+||+.++.-... .... .. ......+.+ ++.
T Consensus 197 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 197 GQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp TEEEEEEECS--SCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred CeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 7653321111 111122222 567888877653 477889887754321 1100 11 111122222 566
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccC-----------CCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANM-----------NRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDP 609 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~-----------p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~ 609 (680)
+++.|+.++ .+.+||..+..-...... .......+++.. ++..++.|+.+ ..+.+||.
T Consensus 270 ~l~s~s~d~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~iwd~ 339 (393)
T 1erj_A 270 SVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDK 339 (393)
T ss_dssp EEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEET
T ss_pred EEEEEeCCC-----EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----CeEEEEEC
Confidence 777777664 677888765321111000 011111122222 45666667654 35888998
Q ss_pred CCCcEEEcCCCCCCccc-eEEEEE-------CCEEEEEecccC
Q 005735 610 RLGSWMSGEPMKLSRGY-LGAAVV-------KEAIYVIGGVKN 644 (680)
Q Consensus 610 ~t~~W~~v~~lp~~R~~-~s~v~~-------~~~lyV~GG~~~ 644 (680)
.+..-... +...... .+++.. ++.+++.||.++
T Consensus 340 ~~~~~~~~--l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 340 KSGNPLLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp TTCCEEEE--EECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred CCCeEEEE--ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 77543221 1111111 222222 357888887664
No 102
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.16 E-value=0.63 Score=46.60 Aligned_cols=240 Identities=10% Similarity=0.039 Sum_probs=121.1
Q ss_pred ceEEEcCCCEEEEEecCC--CCcccCeEEEEeCCCCeEEEcCCC---CCCccceEEEEE-C-CEEEEEecCCCCCccceE
Q 005735 391 DELHLDPSESIYLVGGCD--GDSWLSTLELYLPSCDVIKTLKPM---SSARSYASAAML-N-GELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~--~~~~~~~v~~yd~~t~~W~~l~~m---p~~R~~~s~v~~-~-~~IyV~GG~~~~~~~~~v 463 (680)
....+..++.+|+.+... .......+++||+.++++..+... .......+++.. + +.|||.+.. ..+
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l 94 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGL 94 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCE
Confidence 345556678888872110 011224689999988888765421 011222334333 4 789987642 258
Q ss_pred EEEeCCCCcEEEC-CCCCCC--CcccEEEEE--CCEEEEEccCCC----------CcccceEEEEeCCCccEEEcc-ccc
Q 005735 464 ESYSPANDEWTSR-PSLNGT--KGSLAGATI--DNKIFAIGGGNG----------LECFSDVEMLDLDIGKWIRTR-SML 527 (680)
Q Consensus 464 ~vyD~~t~~W~~l-~~lp~~--r~~~a~~v~--~gkIyV~GG~~~----------~~~~~~ve~yD~~t~~W~~i~-~~p 527 (680)
++||+. ++...+ ...... ........+ +|++|+...... ......++.||+. ++...+. ...
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 999998 777665 332211 111222223 678888754221 1112468889887 6554432 111
Q ss_pred ccccceEEEEE-----CC-EEEEEcCCCCCCcCceeEEEeCC-CCcEEE---eccCCCC--CceeEEEEE-CCEEEEEec
Q 005735 528 QKRFALAAAEL-----NG-VLYATGGYDGNEYMNSAERFDPR-EHYWTK---IANMNRR--RGCHSLAVL-NGKLYALGG 594 (680)
Q Consensus 528 ~~r~~~s~~~~-----~g-~Lyv~GG~~~~~~~~~v~~yD~~-t~~W~~---v~~~p~~--r~~~s~v~~-~~~IyviGG 594 (680)
. ...++.. ++ .||+....+ ..+++||+. ++++.. +..++.. .....++.. ++.||+...
T Consensus 173 ~---~~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 173 F---PNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp S---EEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred C---cceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 1 1223333 34 577764322 468888875 444322 1222222 122233332 577888753
Q ss_pred cCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CCE-EEEEecccCCCcccceEEEEcCC
Q 005735 595 FDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEA-IYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~~-lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
. ...+.+||+++......-..+. ....+++.- +++ ||+.+... ..+.+|++.
T Consensus 245 ~-----~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~------~~l~~~~~~ 298 (314)
T 1pjx_A 245 G-----SSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHEN------NAVWKFEWQ 298 (314)
T ss_dssp T-----TTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTT------TEEEEEECS
T ss_pred C-----CCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCC------CeEEEEeCC
Confidence 2 2468999998443211111221 222333332 444 77665432 358888876
No 103
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.15 E-value=0.49 Score=48.93 Aligned_cols=245 Identities=7% Similarity=-0.119 Sum_probs=119.1
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccce-EEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYA-SAAMLNGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~-s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
..+.+++..+++....+ ....++++|..++....+..... .... ....-+++.+++.... ..++++|..+.
T Consensus 41 ~~~SpdG~~l~~~~~~~--g~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFD--GNRNYYLLNLETQQAVQLTEGKG-DNTFGGFISTDERAFFYVKNE-----LNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTT--SSCEEEEEETTTTEEEECCCSSC-BCTTTCEECTTSSEEEEEETT-----TEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecC--CCceEEEEECCCCcEEEeecCCC-CccccceECCCCCEEEEEEcC-----CcEEEEECCCC
Confidence 34555665555544321 12368999999998877754332 1111 1112244444444432 25889998887
Q ss_pred cEEECCCCCCCCcccEEEEECCEEEEEccC---------------CCC----------cccceEEEEeCCCccEEEcccc
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNKIFAIGGG---------------NGL----------ECFSDVEMLDLDIGKWIRTRSM 526 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~---------------~~~----------~~~~~ve~yD~~t~~W~~i~~~ 526 (680)
+-+.+...+.. ...+++.+++... ++. .....++.+|+.+++...+..-
T Consensus 113 ~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~ 186 (396)
T 3c5m_A 113 EEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD 186 (396)
T ss_dssp CEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE
T ss_pred CcEEEEecccc------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC
Confidence 65554332221 1112222222110 010 1234688999998887665421
Q ss_pred cccccceEEEEE--CCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCE-EEEEeccCCCCC
Q 005735 527 LQKRFALAAAEL--NGV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGK-LYALGGFDGSAM 600 (680)
Q Consensus 527 p~~r~~~s~~~~--~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~-IyviGG~~~~~~ 600 (680)
+ ......... ++. |+++...........++++|..+..++.+.. ..+........+ +++ |+.. .......
T Consensus 187 ~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~-~~~~~~~ 262 (396)
T 3c5m_A 187 T--AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYV-SYFKGQT 262 (396)
T ss_dssp S--SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEE-EEETTTC
T ss_pred C--cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEE-ecCCCCc
Confidence 1 111122222 243 5544321111223579999998888777654 211212222222 454 4444 3222222
Q ss_pred CCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CCEEEEEecccCC----------CcccceEEEEcCC
Q 005735 601 VPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNG----------SEIVDTVERFKEG 658 (680)
Q Consensus 601 ~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~----------~~~~~~ve~y~~~ 658 (680)
...++++|+.++....+...+. .. ....- +++++++++.... ......+++++..
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 263 DRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp CEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred cceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 2349999999888777654432 11 11222 6666666543210 0122467888865
No 104
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.15 E-value=0.81 Score=52.51 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=117.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCC-----------C
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGN-----------S 458 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~-----------~ 458 (680)
....+.++++.++++...+......++++|..+++...... .... ...++.. +++.++++..... .
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 45566777777777654333333479999999998765421 1111 1122222 5544444443322 2
Q ss_pred ccceEEEEeCCCCcEE--ECCCCC-CCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCC------c--cEEEcccc
Q 005735 459 WHNTVESYSPANDEWT--SRPSLN-GTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDI------G--KWIRTRSM 526 (680)
Q Consensus 459 ~~~~v~vyD~~t~~W~--~l~~lp-~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t------~--~W~~i~~~ 526 (680)
....+++++..+.... .+...+ .+....+... -+|+.++++...+....+.++.+|+.+ + .+..+..-
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence 2456888998876521 221111 1222222222 256644444322222246789999876 4 57666432
Q ss_pred cccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC---cEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCC
Q 005735 527 LQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH---YWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 527 p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~---~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~ 602 (680)
..... .....-++.||+.+..+. ....++++|+.+. .|+.+-.-........++.. ++.+++....++ ..
T Consensus 286 ~~~~~-~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g---~~ 359 (710)
T 2xdw_A 286 FEGEY-DYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV---KN 359 (710)
T ss_dssp SSSCE-EEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT---EE
T ss_pred CCcEE-EEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC---EE
Confidence 22221 122334678888865432 2357899998875 58887543222223344455 778877765443 34
Q ss_pred eEEEEeCCCCc-EEEc
Q 005735 603 SIEVYDPRLGS-WMSG 617 (680)
Q Consensus 603 ~v~~yD~~t~~-W~~v 617 (680)
.++++|+.++. ...+
T Consensus 360 ~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 360 TLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEEEec
Confidence 68999985544 4444
No 105
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.14 E-value=0.77 Score=46.92 Aligned_cols=245 Identities=14% Similarity=0.163 Sum_probs=118.7
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC-CccceEEEEE-C-CEEEEEecCCCCCccceEEEE
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS-ARSYASAAML-N-GELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~-~R~~~s~v~~-~-~~IyV~GG~~~~~~~~~v~vy 466 (680)
.....+.++++||+.+... ....+++||..+++++.+..... ......++.. + ..||+.+... ..+.+|
T Consensus 42 p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~v~ 113 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK-----GTAEVM 113 (347)
T ss_dssp CCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT-----TEEEEE
T ss_pred cceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC-----CEEEEE
Confidence 3456677788877766421 12458889988888776654221 2222333333 3 4577665322 356777
Q ss_pred eCC-CCcEEECCCC------CCCCc---ccEEEEE--CCEEEEEccCCCCcccceEEEEeCC-CccEEEccc--cccccc
Q 005735 467 SPA-NDEWTSRPSL------NGTKG---SLAGATI--DNKIFAIGGGNGLECFSDVEMLDLD-IGKWIRTRS--MLQKRF 531 (680)
Q Consensus 467 D~~-t~~W~~l~~l------p~~r~---~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~-t~~W~~i~~--~p~~r~ 531 (680)
|.. +.+.+.+..+ |.+|. ....+.+ ++++|+.+..+ ..+.+||+. +++...+.. .+.. .
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g-~ 187 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTMEAG-F 187 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCTT-C
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcCCC-C
Confidence 764 3333322111 11111 1112223 67777765422 367889988 566554332 1111 1
Q ss_pred ceEEEEE--CCE-EEEEcCCCCCCcCceeEEEe--CCCCcEEEec---cCCCC----CceeEEEEE-CC-EEEEEeccCC
Q 005735 532 ALAAAEL--NGV-LYATGGYDGNEYMNSAERFD--PREHYWTKIA---NMNRR----RGCHSLAVL-NG-KLYALGGFDG 597 (680)
Q Consensus 532 ~~s~~~~--~g~-Lyv~GG~~~~~~~~~v~~yD--~~t~~W~~v~---~~p~~----r~~~s~v~~-~~-~IyviGG~~~ 597 (680)
....+.+ +++ +|+.+..+ ..+.+|+ ..++.+..+. ..+.. .....++.. ++ .||+.+..
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-- 260 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-- 260 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET--
T ss_pred CCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC--
Confidence 1222233 454 77765433 2445554 4456765543 23321 112223332 45 47776542
Q ss_pred CCCCCeEEEEeCCC-CcEEEcCCCCCC-ccceEEEEE-CCE-EEEEecccCCCcccceEEEE--cCC-CCeEec
Q 005735 598 SAMVPSIEVYDPRL-GSWMSGEPMKLS-RGYLGAAVV-KEA-IYVIGGVKNGSEIVDTVERF--KEG-QGWEEI 664 (680)
Q Consensus 598 ~~~~~~v~~yD~~t-~~W~~v~~lp~~-R~~~s~v~~-~~~-lyV~GG~~~~~~~~~~ve~y--~~~-~~W~~v 664 (680)
.+.+.+||+.. ..+..+..++.. .....++.- +++ ||+.+. .. ..+.+| ++. ..-..+
T Consensus 261 ---~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~-----~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 261 ---YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ-NT-----DNATLYARDLTSGKLSLL 325 (347)
T ss_dssp ---TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET-TT-----TEEEEEEECTTTCCEEEE
T ss_pred ---CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc-CC-----CcEEEEEEeCCCCeEEec
Confidence 24688888763 356555444431 222233333 454 555443 22 245666 654 555443
No 106
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.14 E-value=0.6 Score=45.49 Aligned_cols=227 Identities=12% Similarity=-0.026 Sum_probs=117.7
Q ss_pred ccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC-CcEEECCCCCCCCc-ccEE
Q 005735 412 WLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN-DEWTSRPSLNGTKG-SLAG 488 (680)
Q Consensus 412 ~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t-~~W~~l~~lp~~r~-~~a~ 488 (680)
....++++|..++....+... .....+++.. +++.+++++. ..++++|..+ .+...+........ ....
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT--PELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE--SSCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred cceeEEEEeCCCCceeeeccC--CcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccceE
Confidence 446789999999887665432 1122223222 5666666642 3699999998 77666543332111 2222
Q ss_pred EEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CC-EEEEEcCCCCCCcCceeEEEeCCCCc
Q 005735 489 ATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NG-VLYATGGYDGNEYMNSAERFDPREHY 566 (680)
Q Consensus 489 ~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~ 566 (680)
..-+++.+++++.... ....++.+|..++....+..... ...++.. ++ .|++.++.++. ..+|.+|..+..
T Consensus 92 ~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~---~~l~~~~~~~~~ 164 (297)
T 2ojh_A 92 ISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQV---FDIYSMDIDSGV 164 (297)
T ss_dssp ECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETTE---EEEEEEETTTCC
T ss_pred ECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCCc---eEEEEEECCCCc
Confidence 2236666666553221 24568888888776555433221 1122222 34 45545544322 367778787777
Q ss_pred EEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEecc
Q 005735 567 WTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGV 642 (680)
Q Consensus 567 W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~ 642 (680)
...+...+.. ...++.. +++ |++.+..++ ...+|.+++.......+.... .....+.+ +++.+++++.
T Consensus 165 ~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 165 ETRLTHGEGR--NDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp EEECCCSSSC--EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEE
T ss_pred ceEcccCCCc--cccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEc
Confidence 7665443221 1222222 454 444433332 356888888777776664322 12222233 5555555554
Q ss_pred cCCCc-----ccceEEEEcCC-CCe
Q 005735 643 KNGSE-----IVDTVERFKEG-QGW 661 (680)
Q Consensus 643 ~~~~~-----~~~~ve~y~~~-~~W 661 (680)
+.... ....+++|+.. ...
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCCCCcccccCceEEEEEecCCCCc
Confidence 43211 22457788766 443
No 107
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.13 E-value=0.3 Score=50.70 Aligned_cols=200 Identities=12% Similarity=0.123 Sum_probs=99.1
Q ss_pred eEEEcCC----C---EEEEEecCCCCcccCeEEEEeCCCCe------EEEcCCCCCC---ccceEEEEE-----CCEE-E
Q 005735 392 ELHLDPS----E---SIYLVGGCDGDSWLSTLELYLPSCDV------IKTLKPMSSA---RSYASAAML-----NGEL-Y 449 (680)
Q Consensus 392 ~~~v~~~----~---~Iyv~GG~~~~~~~~~v~~yd~~t~~------W~~l~~mp~~---R~~~s~v~~-----~~~I-y 449 (680)
+..+.++ + .+++.|+.++ .+.+||..++. +..+...+.. ..-.+++.. ++.. +
T Consensus 67 ~~~~~~~~~~~g~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 67 HVDVLQAIERDAFELCLVATTSFSG-----DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTS-----CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred EEEEecccccCCccccEEEEEcCCC-----CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence 3444555 7 7888887653 47777776665 6666544311 222333333 4555 7
Q ss_pred EEecCCCCCccceEEEEeCCC------Cc---EEECCCC--------CCCCcccEEEEE-CCEEEEEccCCCCcccceEE
Q 005735 450 IFGGGDGNSWHNTVESYSPAN------DE---WTSRPSL--------NGTKGSLAGATI-DNKIFAIGGGNGLECFSDVE 511 (680)
Q Consensus 450 V~GG~~~~~~~~~v~vyD~~t------~~---W~~l~~l--------p~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve 511 (680)
+.|+.++ .+.+||..+ .+ |.....+ .....-.+++.. ++ +++.|+.+ ..+.
T Consensus 142 ~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~ 210 (397)
T 1sq9_A 142 VATDVKG-----TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQ 210 (397)
T ss_dssp EEEETTS-----CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEE
T ss_pred EEEeCCC-----cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEE
Confidence 7777653 467777655 21 1100011 011111222333 45 66666644 3578
Q ss_pred EEeCCCccEEEcccc---c-ccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC-----------
Q 005735 512 MLDLDIGKWIRTRSM---L-QKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN----------- 574 (680)
Q Consensus 512 ~yD~~t~~W~~i~~~---p-~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p----------- 574 (680)
+||+.+.+-...-.. . ........+.+ ++.+++.|+.++ ....+.+||..+.+-...-..+
T Consensus 211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCccccccccccc
Confidence 899987654322111 1 00111222233 566777776541 0136889998876533221111
Q ss_pred -CCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 575 -RRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 575 -~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
......+++.. ++.+++.|+.+ ..+.+||+.+..-
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKER 325 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred ccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCce
Confidence 11222223322 56677777754 3688999987643
No 108
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.10 E-value=0.26 Score=49.93 Aligned_cols=226 Identities=11% Similarity=0.011 Sum_probs=111.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-C-CEEEEEecCCCCCccceEEEEeCCCCcE--
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-N-GELYIFGGGDGNSWHNTVESYSPANDEW-- 473 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~-~~IyV~GG~~~~~~~~~v~vyD~~t~~W-- 473 (680)
.+.+|+.++.+ ..+.+||+.+++....-..+. ....++.. + ..+|+.+... ..++++|..+++.
T Consensus 9 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 9 SNFGIVVEQHL-----RRISFFSTDTLEILNQITLGY--DFVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKV 76 (331)
T ss_dssp CCEEEEEEGGG-----TEEEEEETTTCCEEEEEECCC--CEEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEE
T ss_pred CCEEEEEecCC-----CeEEEEeCcccceeeeEEccC--CcceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeE
Confidence 67788877643 478999999988765433322 12233322 3 4577776543 3789999988764
Q ss_pred EECCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CC-EEEEEcCCC
Q 005735 474 TSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NG-VLYATGGYD 549 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g-~Lyv~GG~~ 549 (680)
..+..-..+ .++.+.. ++ .+| .+... .....+.+||+.+++....-+. ......++.. ++ .+|+.+..+
T Consensus 77 ~~~~~~~~~--~~~~~~s~dg~~l~-~~~~~--~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 77 VAIQEGQSS--MADVDITPDDQFAV-TVTGL--NHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp EEEEECSSC--CCCEEECTTSSEEE-ECCCS--SSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETT
T ss_pred EecccCCCC--ccceEECCCCCEEE-EecCC--CCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCC
Confidence 222211111 1212222 44 466 33221 1123788999998875443222 1112233333 44 477765432
Q ss_pred CCCcCce-eEEEeCCCCc-EEEe--ccCCCCCceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCCcE-EEcCCCCC
Q 005735 550 GNEYMNS-AERFDPREHY-WTKI--ANMNRRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLGSW-MSGEPMKL 622 (680)
Q Consensus 550 ~~~~~~~-v~~yD~~t~~-W~~v--~~~p~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~~W-~~v~~lp~ 622 (680)
.. +.+|+...+. .... ..++.......++.. ++ .+|+.+.. ...+.+||+.+.+. ..+..++.
T Consensus 150 -----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 150 -----ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAVGT 219 (331)
T ss_dssp -----TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEEEC
T ss_pred -----CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeeccC
Confidence 23 6666654322 1111 111222222333333 44 47776543 25689999987664 11222222
Q ss_pred CccceEEEEE-CCE-EEEEecccCCCcccceEEEEcCC
Q 005735 623 SRGYLGAAVV-KEA-IYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 623 ~R~~~s~v~~-~~~-lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
......++.. +++ +|+..+.. ..+.+|+..
T Consensus 220 ~~~~~~~~~spdg~~l~v~~~~~------~~i~~~d~~ 251 (331)
T 3u4y_A 220 NNLPGTIVVSRDGSTVYVLTEST------VDVFNFNQL 251 (331)
T ss_dssp SSCCCCEEECTTSSEEEEECSSE------EEEEEEETT
T ss_pred CCCCceEEECCCCCEEEEEEcCC------CEEEEEECC
Confidence 2222233333 444 66654422 246777765
No 109
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.07 E-value=0.21 Score=51.94 Aligned_cols=192 Identities=12% Similarity=0.098 Sum_probs=104.4
Q ss_pred ceEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC-ccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 391 DELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA-RSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~-R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
.+..+.+++ .+++.|+.++ .+.+||..+......-..... ..-.+++.. ++.+++.|+.+ ..+.++
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iw 146 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLR 146 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEE
T ss_pred EEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEE
Confidence 345556666 7888887643 588899987766554333222 222333333 34677777765 368889
Q ss_pred eCCCCcEEECCCCCCCCccc-EEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCE-
Q 005735 467 SPANDEWTSRPSLNGTKGSL-AGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGV- 541 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~-a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~- 541 (680)
|..+.....+.......... +.+. -++++++.|+.+ ..+.+||+....-..+.. .......+.+ ++.
T Consensus 147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDW 218 (383)
T ss_dssp ETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTT
T ss_pred ECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCC
Confidence 99877665554322211112 2222 256677777654 357788885443222221 1111222223 344
Q ss_pred EEEEcCCCCCCcCceeEEEeCCC----CcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPRE----HYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t----~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
+++.|+.++ .+.+||..+ ....... .......+++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 219 ~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 219 LMATSSVDA-----TVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW 283 (383)
T ss_dssp EEEEEETTS-----EEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred EEEEEeCCC-----EEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence 777777654 688898876 3333222 222222333332 55677777654 46888888654
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.05 E-value=0.12 Score=54.41 Aligned_cols=197 Identities=11% Similarity=0.131 Sum_probs=100.8
Q ss_pred eEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEE-----cCCCCCCccceEEEEE--CC-EEEEEecCCCCCccce
Q 005735 392 ELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKT-----LKPMSSARSYASAAML--NG-ELYIFGGGDGNSWHNT 462 (680)
Q Consensus 392 ~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~-----l~~mp~~R~~~s~v~~--~~-~IyV~GG~~~~~~~~~ 462 (680)
+..+.+ ++.+++.|+.+ ..+.+||..++.... +..+.........+.+ ++ .+++.|+.++ .
T Consensus 86 ~~~~~p~~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg-----~ 155 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN-----V 155 (402)
T ss_dssp EEEECTTCTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS-----C
T ss_pred EEEeCCCCCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC-----E
Confidence 455555 67788888765 357888887764311 1111111112222223 33 5777777653 5
Q ss_pred EEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcc-cccc-cccceEEEEE
Q 005735 463 VESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR-SMLQ-KRFALAAAEL 538 (680)
Q Consensus 463 v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~-~~p~-~r~~~s~~~~ 538 (680)
+.+||..+.+....-..........++.+ ++..++.|+.+ ..+.+||+.+++-...- .... .+.......-
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence 88999988765432110111112222223 66677777654 35789999887643321 1111 1112222223
Q ss_pred CCEEEEEc---CCCCCCcCceeEEEeCCCCcE-EEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 539 NGVLYATG---GYDGNEYMNSAERFDPREHYW-TKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 539 ~g~Lyv~G---G~~~~~~~~~v~~yD~~t~~W-~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++++++.| +.+ ..+.+||..+..- .....+........++.. +..|++.|+.+ ..+.+||..+.
T Consensus 231 ~~~~l~~g~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d-----g~i~i~d~~~~ 300 (402)
T 2aq5_A 231 EGKILTTGFSRMSE-----RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD-----SSIRYFEITSE 300 (402)
T ss_dssp TTEEEEEEECTTCC-----EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC-----SCEEEEEECSS
T ss_pred CCcEEEEeccCCCC-----ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC-----CeEEEEEecCC
Confidence 67777776 332 4788999876432 111122222223333333 34566666544 35788888776
Q ss_pred c
Q 005735 613 S 613 (680)
Q Consensus 613 ~ 613 (680)
.
T Consensus 301 ~ 301 (402)
T 2aq5_A 301 A 301 (402)
T ss_dssp T
T ss_pred C
Confidence 5
No 111
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.04 E-value=1.1 Score=51.05 Aligned_cols=246 Identities=9% Similarity=-0.045 Sum_probs=121.7
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC-
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN- 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t- 470 (680)
...+.+++.+++..+ ..++++|..++....+...... .......-+++.+++.. + ..++++|..+
T Consensus 86 ~~~~spd~~~~~~~~-------~~i~~~d~~~~~~~~l~~~~~~-~~~~~~SpdG~~la~~~-~-----~~i~v~~~~~~ 151 (706)
T 2z3z_A 86 RTLDAGRGLVVLFTQ-------GGLVGFDMLARKVTYLFDTNEE-TASLDFSPVGDRVAYVR-N-----HNLYIARGGKL 151 (706)
T ss_dssp EEEETTTTEEEEEET-------TEEEEEETTTTEEEEEECCTTC-CTTCEECTTSSEEEEEE-T-----TEEEEEECBCT
T ss_pred eEEECCCCeEEEEEC-------CEEEEEECCCCceEEccCCccc-ccCCcCCCCCCEEEEEE-C-----CeEEEEecCcc
Confidence 445555655544432 5799999999887666433221 11111112443333332 1 4688888877
Q ss_pred ----CcEEECCCCCCCC--------------cccEEEEECCEEEEEccCCC----------------------------C
Q 005735 471 ----DEWTSRPSLNGTK--------------GSLAGATIDNKIFAIGGGNG----------------------------L 504 (680)
Q Consensus 471 ----~~W~~l~~lp~~r--------------~~~a~~v~~gkIyV~GG~~~----------------------------~ 504 (680)
++...+....... .......-+|+.++++..+. .
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 6655543322211 11122222666555544211 1
Q ss_pred cccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCC-cEEEeccCCCCCce--
Q 005735 505 ECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREH-YWTKIANMNRRRGC-- 579 (680)
Q Consensus 505 ~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~-~W~~v~~~p~~r~~-- 579 (680)
.....+.++|+.+++-..+............+.+ +++.++++..+.......++++|+.++ .+..+.........
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 1235688999998876554422111112222333 565444444443333457899999988 77666422111110
Q ss_pred -eE-EEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--C-CEEEEEecccCCCcccceE
Q 005735 580 -HS-LAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--K-EAIYVIGGVKNGSEIVDTV 652 (680)
Q Consensus 580 -~s-~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~-~~lyV~GG~~~~~~~~~~v 652 (680)
.. ...- ++++++.+..++ ...+|.+|........+..-... ......+ + +.||+.+..+. .....+
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~~~~--v~~~~~~spdg~~l~~~~~~~~--~~~~~l 384 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKGEWE--VTNFAGFDPKGTRLYFESTEAS--PLERHF 384 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCSSSC--EEEEEEECTTSSEEEEEESSSC--TTCBEE
T ss_pred cCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCCCeE--EEeeeEEcCCCCEEEEEecCCC--CceEEE
Confidence 11 2222 677666554432 35688899777777776432211 1121233 3 45655554322 122456
Q ss_pred EEEcCC
Q 005735 653 ERFKEG 658 (680)
Q Consensus 653 e~y~~~ 658 (680)
+.++..
T Consensus 385 ~~~d~~ 390 (706)
T 2z3z_A 385 YCIDIK 390 (706)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 777654
No 112
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.00 E-value=0.28 Score=51.23 Aligned_cols=219 Identities=13% Similarity=0.145 Sum_probs=106.7
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcC--CCCCCcc-ceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLK--PMSSARS-YASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~--~mp~~R~-~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
....+++.| +.|+.+ ..+.+||..++.-.... .+..... -.+++.. +++.++.|+.++ .+.++|.
T Consensus 88 ~~~s~d~~l-~~~s~d-----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~ 156 (344)
T 4gqb_B 88 LTWVGERGI-LVASDS-----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-----CIKVWDL 156 (344)
T ss_dssp EEEETTTEE-EEEETT-----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred EEEeCCCeE-EEEECC-----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEEC
Confidence 444456654 456544 35777887765421111 0111111 1222222 677777787653 5888998
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE---CCEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL---NGVL 542 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~---~g~L 542 (680)
.+++-... +..-...-.++.+ ++ .+++.|+.++ .+.+||+.+.+-...-..........++.+ ++.+
T Consensus 157 ~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 157 AQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp TTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred CCCcEEEE--EcCcCCceEEEEecCCCCCceeeecccc-----ccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 88753221 1111111112222 33 4777776553 477899987764332111111111122222 5567
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCC-CCCceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p-~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
++.|+.++ .|.+||..+.+- +..+. ......+++.. ++ ++++.|+.++ .|.+||..+++-..+..
T Consensus 230 l~sg~~dg-----~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-----~i~vwd~~~~~~~~~~~ 297 (344)
T 4gqb_B 230 FVFGDENG-----TVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-----SLAVLDSSLSELFRSQA 297 (344)
T ss_dssp EEEEETTS-----EEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTS-----CEEEECTTCCEEEEECC
T ss_pred eEEeccCC-----cEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCcEEEEcC
Confidence 88887664 688899876542 21111 11122233322 33 5666677653 47889988876443321
Q ss_pred CCCCccceEEEEE---CCEEEEEecccC
Q 005735 620 MKLSRGYLGAAVV---KEAIYVIGGVKN 644 (680)
Q Consensus 620 lp~~R~~~s~v~~---~~~lyV~GG~~~ 644 (680)
. ......+.+ +..+++.||.++
T Consensus 298 --H-~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 298 --H-RDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp --C-SSCEEEEEECSSSTTEEEEEETTS
T ss_pred --C-CCCEEEEEEeCCCCeEEEEEcCCC
Confidence 1 112222333 345777788765
No 113
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.98 E-value=0.35 Score=56.37 Aligned_cols=215 Identities=10% Similarity=0.074 Sum_probs=120.8
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC-CCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS-SARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp-~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.....++.|++ |... .-+++||+.+++++...... ....-.+++.. ++.|++... .-+++||+.+
T Consensus 412 i~~d~~g~lWi-gt~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~ 478 (781)
T 3v9f_A 412 SLKDSEGNLWF-GTYL-----GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-------AGVFVIDLAS 478 (781)
T ss_dssp EEECTTSCEEE-EETT-----EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-------TEEEEEESSS
T ss_pred EEECCCCCEEE-Eecc-----CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-------CceEEEeCCC
Confidence 33444677776 3221 24899999999998875321 11222333333 577877432 2488999999
Q ss_pred CcEEECCCCCC-C-CcccE-EEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEccc---ccccccceEEEE-ECCE
Q 005735 471 DEWTSRPSLNG-T-KGSLA-GATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS---MLQKRFALAAAE-LNGV 541 (680)
Q Consensus 471 ~~W~~l~~lp~-~-r~~~a-~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~---~p~~r~~~s~~~-~~g~ 541 (680)
++|+.....+. . ..... +... +|.||+... ...+.+||+.++++..... ++... ..+++. -+|.
T Consensus 479 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------~~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~ 551 (781)
T 3v9f_A 479 KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------GGGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQ 551 (781)
T ss_dssp SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------SSCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSC
T ss_pred CeEEecccCcccccccceeEEEEEcCCCCEEEEEc------CCCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCC
Confidence 88866543221 0 01112 2222 567877531 1347789999998887642 22211 122222 2677
Q ss_pred EEEEcCCCCCCcCcee-EEEeCCCCcEEEec---cCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 542 LYATGGYDGNEYMNSA-ERFDPREHYWTKIA---NMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v-~~yD~~t~~W~~v~---~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
||+... ..+ .+||+.+++++... .+|.... .+++.- ++.|++.+. ..+..||+.+.++..
T Consensus 552 lWi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~ 616 (781)
T 3v9f_A 552 MWLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYT 616 (781)
T ss_dssp EEEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEE
T ss_pred EEEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEE
Confidence 887532 245 88999988887764 2333222 333333 577877642 348899999998887
Q ss_pred cC---CCCCCccceEEE-EE-CCEEEEEeccc
Q 005735 617 GE---PMKLSRGYLGAA-VV-KEAIYVIGGVK 643 (680)
Q Consensus 617 v~---~lp~~R~~~s~v-~~-~~~lyV~GG~~ 643 (680)
.. .++.......++ .. ++.|| |||..
T Consensus 617 ~~~~dGl~~~~f~~~~~~~~~~G~l~-~g~~~ 647 (781)
T 3v9f_A 617 YDHSNNIPQGSFISGCVTKDHNGLIY-FGSIN 647 (781)
T ss_dssp ECGGGTCCSSCEEEEEEEECTTSCEE-EEETT
T ss_pred ecccCCccccccccCceEECCCCEEE-EECCC
Confidence 53 344443332333 33 45555 46543
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.98 E-value=0.14 Score=53.05 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=78.6
Q ss_pred cceEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcC---------C-C-CCCccceEEEEE---CCEEEEEecC
Q 005735 390 SDELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLK---------P-M-SSARSYASAAML---NGELYIFGGG 454 (680)
Q Consensus 390 ~~~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~---------~-m-p~~R~~~s~v~~---~~~IyV~GG~ 454 (680)
..+..+.+ ++.+++.|+.++ .+.+||..+....... . . .........+.+ ++.+++.|+.
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred EEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 34566676 788888888653 4778887765421110 0 0 111222222223 4557777775
Q ss_pred CCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc
Q 005735 455 DGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR 530 (680)
Q Consensus 455 ~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r 530 (680)
+ ..+.+||..+.+-...-..+... .+.... ++.+++.|+.+ ..+.+||+.+.+-... +....
T Consensus 121 d-----~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~ 186 (408)
T 4a11_B 121 D-----KTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHR 186 (408)
T ss_dssp T-----SEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCC
T ss_pred C-----CeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCC
Confidence 5 36888998887654432222211 112221 33466776654 3577888887643211 11111
Q ss_pred cceEEEEE--CCE-EEEEcCCCCCCcCceeEEEeCCCC
Q 005735 531 FALAAAEL--NGV-LYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 531 ~~~s~~~~--~g~-Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
....++.+ ++. +++.|+.++ .+.+||..+.
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred CcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 11122222 333 677777654 5778887654
No 115
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.6 Score=46.29 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=88.0
Q ss_pred CCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCc-EE
Q 005735 397 PSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDE-WT 474 (680)
Q Consensus 397 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~-W~ 474 (680)
+++..++.|+.+ ..+.+||..+......-.... ..-.+++.. ++.+++.|+.++ .+.+|+..... .+
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-----~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTGQ-GFLNSVCYDSEKELLLFGGKDT-----MINGVPLFATSGED 95 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEECS-SCEEEEEEETTTTEEEEEETTS-----CEEEEETTCCTTSC
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecCC-ccEEEEEECCCCCEEEEecCCC-----eEEEEEeeecCCCC
Confidence 455566777654 357888887765433321111 112222222 566777777653 35666654421 11
Q ss_pred ECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcC
Q 005735 475 SRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYM 554 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~ 554 (680)
....+........+...++..++.|+.+ ..+.+||.......... ...+.........++..++.|+.++
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~---- 165 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSFQDGVVISGSWD-----KTAKVWKEGSLVYNLQA-HNASVWDAKVVSFSENKFLTASADK---- 165 (313)
T ss_dssp C-CEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTEEEEEEEC-CSSCEEEEEEEETTTTEEEEEETTS----
T ss_pred cccchhhcccCEEEEEecCCEEEEEeCC-----CCEEEEcCCcEEEeccc-CCCceeEEEEccCCCCEEEEEECCC----
Confidence 1111122222223334466666666654 34667773322222111 1111111111121566677776654
Q ss_pred ceeEEEeCCCCcEEEeccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 555 NSAERFDPREHYWTKIANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 555 ~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
.+.+||... .-..+. .........++. -++. ++.|+.+ ..+.+||..+..
T Consensus 166 -~i~i~d~~~-~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~ 216 (313)
T 3odt_A 166 -TIKLWQNDK-VIKTFS-GIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGD 216 (313)
T ss_dssp -CEEEEETTE-EEEEEC-SSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCC
T ss_pred -CEEEEecCc-eEEEEe-ccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchh
Confidence 577888322 112222 212222233333 3667 6666654 468899987654
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.98 E-value=0.53 Score=47.59 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=110.3
Q ss_pred eEEEcCCCE-EEEEecCCCCcccCeEEEEeC-CCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSES-IYLVGGCDGDSWLSTLELYLP-SCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~-Iyv~GG~~~~~~~~~v~~yd~-~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++. .++.|+.+ ..+.+||. .++....+........-.+++...+.+++.|+.+ ..+.+||..
T Consensus 61 ~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~ 130 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD-----GLIEVIDPR 130 (342)
T ss_dssp EEEEEESSSEEEEEEETT-----SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHH
T ss_pred EEEECCCCCcEEEEEcCC-----CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEccc
Confidence 445555677 77777754 35889999 8887766644212222223333335556666654 357778766
Q ss_pred CCc-------EEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCC-cc--EEEcccccccccceEEEEE-
Q 005735 470 NDE-------WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI-GK--WIRTRSMLQKRFALAAAEL- 538 (680)
Q Consensus 470 t~~-------W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t-~~--W~~i~~~p~~r~~~s~~~~- 538 (680)
+.. .+.+..+.....-.+++...+. ++.|+.+ ..+.+||+.+ .. ...... +......+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLP 203 (342)
T ss_dssp HHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECS
T ss_pred ccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-CCCCceeEEEECC
Confidence 400 2222223322222233333455 4555433 3578899887 43 221111 111112222233
Q ss_pred -CCEEEEEcCCCCCCcCceeEEEeCCCC-------cEEEeccCCC-------CCceeEEEEE-CCEEEEEeccCCCCCCC
Q 005735 539 -NGVLYATGGYDGNEYMNSAERFDPREH-------YWTKIANMNR-------RRGCHSLAVL-NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 539 -~g~Lyv~GG~~~~~~~~~v~~yD~~t~-------~W~~v~~~p~-------~r~~~s~v~~-~~~IyviGG~~~~~~~~ 602 (680)
++.++++|+.++ .+.+||.... .-..+..... .....+++.. ++++++.|+.+ .
T Consensus 204 ~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g 273 (342)
T 1yfq_A 204 KEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-----G 273 (342)
T ss_dssp GGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-----S
T ss_pred CCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-----c
Confidence 467777777654 4555554432 1111111110 0112222222 56667777754 3
Q ss_pred eEEEEeCCCCcEEEcCCCCC--CccceEEEEECCEEEEEecccC
Q 005735 603 SIEVYDPRLGSWMSGEPMKL--SRGYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 603 ~v~~yD~~t~~W~~v~~lp~--~R~~~s~v~~~~~lyV~GG~~~ 644 (680)
.+.+||..+.+-... +.. .....+++ .++.+++.||.++
T Consensus 274 ~i~vwd~~~~~~~~~--~~~~h~~~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 274 IISCWNLQTRKKIKN--FAKFNEDSVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp CEEEEETTTTEEEEE--CCCCSSSEEEEEE-ECSSEEEEEEECT
T ss_pred eEEEEcCccHhHhhh--hhcccCCCceEec-CCCCeEEEEecCC
Confidence 588999987654332 222 22223444 7788888887654
No 117
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.93 E-value=0.41 Score=46.88 Aligned_cols=190 Identities=13% Similarity=0.064 Sum_probs=103.0
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
....+.+++.||+... + ..+.+||+.......+... ......+++.. ++.||+..... ..+.+|+..
T Consensus 70 ~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~ 137 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-N-----NRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGN-----NRVVKLAAG 137 (270)
T ss_dssp CCEEECTTCCEEEEET-T-----TEEEEECTTCSCCEECCCC-SCSSEEEEEECTTCCEEEEEGGG-----TEEEEECTT
T ss_pred ceeEECCCCCEEEEcC-C-----CEEEEEeCCCceEeeeecC-CcCCCcceEECCCCCEEEEECCC-----CEEEEEECC
Confidence 4456666777888765 2 3589999987765544321 11223344444 67899875432 358888877
Q ss_pred CCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEc
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATG 546 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~G 546 (680)
+........... ..-.+.+.- ++++|+.... ...+.+||+.+..-....... ...+....+ +|.||+..
T Consensus 138 ~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v~~ 209 (270)
T 1rwi_B 138 SKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTE 209 (270)
T ss_dssp CCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEE
T ss_pred CceeEeeccccC-CCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecccC--CCCceEEEECCCCCEEEEE
Confidence 665443321111 111223332 5788887532 246889998876644332111 122223333 56888875
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
..+ ..+.+||+....-..... .......+++.. ++.||+....+ +.|.+|++..
T Consensus 210 ~~~-----~~v~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~-----~~v~~~~~~~ 264 (270)
T 1rwi_B 210 HNT-----NQVVKLLAGSTTSTVLPF-TGLNTPLAVAVDSDRTVYVADRGN-----DRVVKLTSLE 264 (270)
T ss_dssp TTT-----SCEEEECTTCSCCEECCC-CSCSCEEEEEECTTCCEEEEEGGG-----TEEEEECCCG
T ss_pred CCC-----CcEEEEcCCCCcceeecc-CCCCCceeEEECCCCCEEEEECCC-----CEEEEEcCCC
Confidence 432 368899987654333221 111222333332 56788886532 4678887654
No 118
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.90 E-value=0.11 Score=53.83 Aligned_cols=202 Identities=14% Similarity=0.110 Sum_probs=91.5
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe-EEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV-IKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~-W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
.+..+.+++.+++.|+.++ .+.+||..++. |.....+.........+.+ ++.+++.|+.++ .+.+||
T Consensus 59 ~~~~~s~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd 128 (377)
T 3dwl_C 59 TCVDWAPKSNRIVTCSQDR-----NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-----VISVCY 128 (377)
T ss_dssp EEEEECTTTCCEEEEETTS-----SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-----CEEECC
T ss_pred EEEEEeCCCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-----eEEEEE
Confidence 3455666777888887653 47788887765 4333222222222222222 566777777653 477888
Q ss_pred CCCCc-EEECCCCCCC-CcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccE----------------EEccccc
Q 005735 468 PANDE-WTSRPSLNGT-KGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKW----------------IRTRSML 527 (680)
Q Consensus 468 ~~t~~-W~~l~~lp~~-r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W----------------~~i~~~p 527 (680)
..+.+ |.....+..+ .....++.+ ++++++.|+.++ .+.+||+.+... ..+..+
T Consensus 129 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (377)
T 3dwl_C 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY- 202 (377)
T ss_dssp C-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred ECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC-----EEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence 77654 3222222221 112222222 566777777553 466788754331 111112
Q ss_pred ccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcE--EEeccCCCCC-ceeEEE-EECCEEEEEeccCCCCCC
Q 005735 528 QKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYW--TKIANMNRRR-GCHSLA-VLNGKLYALGGFDGSAMV 601 (680)
Q Consensus 528 ~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W--~~v~~~p~~r-~~~s~v-~~~~~IyviGG~~~~~~~ 601 (680)
........+.+ ++++++.|+.++ .+.+||..+..- ..+..+.... ...+++ .-++++++.|+.
T Consensus 203 ~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------ 271 (377)
T 3dwl_C 203 PSGGWVHAVGFSPSGNALAYAGHDS-----SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN------ 271 (377)
T ss_dssp CCSSSEEEEEECTTSSCEEEEETTT-----EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS------
T ss_pred cCCceEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC------
Confidence 11111122223 566777776654 567788776543 2122222111 122222 237787766642
Q ss_pred CeEEEEeCCCCcEEEcCC
Q 005735 602 PSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 602 ~~v~~yD~~t~~W~~v~~ 619 (680)
+.+.+|+.....|.....
T Consensus 272 ~~~~~~~~~~~~~~~~~~ 289 (377)
T 3dwl_C 272 YSPILLQGNESGWAHTRD 289 (377)
T ss_dssp SSEEEECCCC---CCSBC
T ss_pred CcEEEEEeCCCceEEEee
Confidence 235577777666765443
No 119
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.89 E-value=1.5 Score=43.27 Aligned_cols=192 Identities=9% Similarity=0.096 Sum_probs=102.6
Q ss_pred eEEE-cCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHL-DPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v-~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
...+ ..++.||+.+.. ....+.+||+.......+... .......+++. ++.+||..... ..+.+||+.
T Consensus 81 ~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~ 150 (286)
T 1q7f_A 81 RVAVVRNSGDIIVTERS----PTHQIQIYNQYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQN 150 (286)
T ss_dssp EEEEETTTTEEEEEECG----GGCEEEEECTTSCEEEEECTT-TCSCEEEEEECTTSCEEEEETTT-----TEEEEECTT
T ss_pred EEEEEcCCCeEEEEcCC----CCCEEEEECCCCcEEEEecCc-cCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCC
Confidence 4455 468899988742 124588999665554444321 11222344433 57888876432 468899987
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYAT 545 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~ 545 (680)
........... .........+ ++++|+.+.. ...+.+||+.......+..-.. ...+....+ +|.||+.
T Consensus 151 g~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~-~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 151 GNVLHKFGCSK-HLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGI-TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp SCEEEEEECTT-TCSSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTT-SCSEEEEEECTTCCEEEE
T ss_pred CCEEEEeCCCC-ccCCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCc-cCCCcEEEECCCCCEEEE
Confidence 65444432111 1112223333 5789987532 3568899986654443332111 112223333 6788887
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
...++ ..+.+||+....-..+..-.......+++.. ++.||+... + +.|.+|+..
T Consensus 224 ~~~~~----~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~-~-----~~v~v~~~~ 279 (286)
T 1q7f_A 224 DNHNN----FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK-D-----YRLYIYRYV 279 (286)
T ss_dssp ECSSS----CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-T-----TEEEEEECS
T ss_pred eCCCC----EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC-C-----CeEEEEEcc
Confidence 64331 2688999765544444321111122344443 678888742 2 467777754
No 120
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.87 E-value=0.2 Score=57.39 Aligned_cols=213 Identities=10% Similarity=-0.029 Sum_probs=110.3
Q ss_pred cceEEEcCCCEEEEEecC-CCCcccCeEEEEeCCCCeEEEcCCCCCCc----------------------c-ceEEEE-E
Q 005735 390 SDELHLDPSESIYLVGGC-DGDSWLSTLELYLPSCDVIKTLKPMSSAR----------------------S-YASAAM-L 444 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~-~~~~~~~~v~~yd~~t~~W~~l~~mp~~R----------------------~-~~s~v~-~ 444 (680)
.....+.+++..+++++. ++......++++|..+++...+....... . ...++. -
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 445677778877777776 44344457999999998877664321110 0 111222 2
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCC---cEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPAND---EWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~---~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
+++.+++++. ..++++|..++ .-..+... ........+ +|+.++++.. ..++++|+.+++
T Consensus 119 Dg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~---~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~~g~ 183 (741)
T 2ecf_A 119 DAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHG---EGFATDAKLSPKGGFVSFIRG------RNLWVIDLASGR 183 (741)
T ss_dssp TSSEEEEEET------TEEEEEESSSCSTTSCCBCCCS---SSCEEEEEECTTSSEEEEEET------TEEEEEETTTTE
T ss_pred CCCEEEEEeC------CcEEEEECCCCCcceEEEcccC---CcccccccCCCCCCEEEEEeC------CcEEEEecCCCC
Confidence 5555555543 57999999877 43333221 111222222 6665555431 378999999887
Q ss_pred EEEccccccccc--------------ceEEEEE--CCEEEEEcCCCCC----------------------------CcCc
Q 005735 520 WIRTRSMLQKRF--------------ALAAAEL--NGVLYATGGYDGN----------------------------EYMN 555 (680)
Q Consensus 520 W~~i~~~p~~r~--------------~~s~~~~--~g~Lyv~GG~~~~----------------------------~~~~ 555 (680)
...+........ ......+ +|+.++++..++. ....
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 766543221100 0011222 4543444332221 1122
Q ss_pred eeEEEeCCC-CcEEEeccC-CCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 556 SAERFDPRE-HYWTKIANM-NRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 556 ~v~~yD~~t-~~W~~v~~~-p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.++++|..+ ++-..+... ........++.-+++.++++..+.......++++|+.+.....+
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~ 327 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL 327 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEE
Confidence 788899888 775555322 11111111111444444443332222345789999998877665
No 121
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.84 E-value=0.26 Score=54.50 Aligned_cols=235 Identities=11% Similarity=0.109 Sum_probs=115.1
Q ss_pred ccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC----e-EEEcCCCCCCccceEEEE-E--CCEEEEEecCCCCCcc
Q 005735 389 SSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD----V-IKTLKPMSSARSYASAAM-L--NGELYIFGGGDGNSWH 460 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~----~-W~~l~~mp~~R~~~s~v~-~--~~~IyV~GG~~~~~~~ 460 (680)
...+..+.+++..+++|+- ..+.+||..+. . -..+.... ...-.+++. - ++++++.|+.+
T Consensus 20 ~v~~~~~spdg~~l~~~~~------~~v~v~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~~~d----- 87 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCG------KSAFVRCLDDGDSKVPPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDES----- 87 (615)
T ss_dssp CCCCCEEETTTTEEEEEET------TEEEEEECCSSCCSSCSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETT-----
T ss_pred ceeEEEECCCCCEEEEecC------CeEEEEECCCCCCccccceEEecCC-CceEEEEEECcCCCCCEEEEecCC-----
Confidence 3455667777877777762 36888998865 2 22322111 110122222 2 56777777765
Q ss_pred ceEEEEeCCCC------cEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccc
Q 005735 461 NTVESYSPAND------EWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFA 532 (680)
Q Consensus 461 ~~v~vyD~~t~------~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~ 532 (680)
..+.+||..+. .......+........+..+ +++.++.+|.+.. ....+..+|.. +- +..+......
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~--~~--~~~~~~~~~~ 162 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSG--NS--LGEVSGHSQR 162 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTC--CE--EEECCSCSSC
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEECC--Cc--ceeeecCCcc
Confidence 35777777544 33332222211122222222 5666666654322 13456666632 21 1111111111
Q ss_pred eEEEEE--CCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCC----ceeEEEEE-C-CEEEEEeccCCCCCCCe
Q 005735 533 LAAAEL--NGV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR----GCHSLAVL-N-GKLYALGGFDGSAMVPS 603 (680)
Q Consensus 533 ~s~~~~--~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r----~~~s~v~~-~-~~IyviGG~~~~~~~~~ 603 (680)
...+.+ ++. +++.|+.++ .+.+||..+.+-... +.... ...+++.. + +..++.|+.+ ..
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~ 230 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDG-----SVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----RK 230 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTT-----EEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT-----CC
T ss_pred EEEEEECCCCCcEEEEEeCCC-----cEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC-----Ce
Confidence 122222 333 667776553 688899776543322 22111 22233332 5 6777777754 35
Q ss_pred EEEEeCCCCcEEEcC-CC--CCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 604 IEVYDPRLGSWMSGE-PM--KLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 604 v~~yD~~t~~W~~v~-~l--p~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+.+||+.+......- .. .......+++..++..++.|+.++ .+.+|+..
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~------~i~~wd~~ 282 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA------TIRVWDVT 282 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS------EEEEEETT
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCC------cEEEEECC
Confidence 889998876654322 10 111122222222777777777553 46677754
No 122
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.24 Score=57.17 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=99.9
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+....+++..+++|+.+ ..+.+||..++.....-. ........+.+ ++..++.|+.+ ..+.+||.
T Consensus 59 ~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 126 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVVDFE--AHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNW 126 (814)
T ss_dssp EEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEe--cCCCCEEEEEEeCCCCEEEEEcCC-----CEEEEEEC
Confidence 345556677777777754 368889988876543211 11111222222 55556666654 35788888
Q ss_pred CCC-cEEECCCCCCCCcc-cEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE---CCE
Q 005735 469 AND-EWTSRPSLNGTKGS-LAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL---NGV 541 (680)
Q Consensus 469 ~t~-~W~~l~~lp~~r~~-~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~---~g~ 541 (680)
.++ ..... +...... .+++.. ++.+++.|+.+ ..+.+||+.+..-..............++.. ++.
T Consensus 127 ~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 127 ENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp GGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC
T ss_pred CCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC
Confidence 765 22211 1111111 222232 45677777654 3577888876542111111111111222222 667
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
++++|+.++ .+.+||..+..-...-... .....+++.. ++.+++.|+.++ .+.+||+.+..-.
T Consensus 200 ~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 200 YMITASDDL-----TIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDG-----TLKIWNSSTYKVE 263 (814)
T ss_dssp EEEEECTTS-----EEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCSEE
T ss_pred EEEEEeCCC-----EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEE
Confidence 777777654 6889998876533221111 1111222222 566777777543 4788888775433
No 123
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.81 E-value=1.6 Score=44.18 Aligned_cols=207 Identities=14% Similarity=0.075 Sum_probs=108.0
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
....+.+++.||+.+..+ ..+++||+.++++..+.... .....+++.. ++++|+.+.... .....+++||+.
T Consensus 48 ~~~~~~~~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~ 120 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATEN 120 (333)
T ss_dssp EEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTT
T ss_pred cCcEECCCCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCC
Confidence 345566788888877543 36899999988877653211 1223344433 678888754321 112468999998
Q ss_pred CCcEEE-CCCCCCCCcccEEEEE--CCEEEEEccCC-CCcccceEEEEeCCCccEEEcccccccccceEEEEE-CC-EEE
Q 005735 470 NDEWTS-RPSLNGTKGSLAGATI--DNKIFAIGGGN-GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NG-VLY 543 (680)
Q Consensus 470 t~~W~~-l~~lp~~r~~~a~~v~--~gkIyV~GG~~-~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g-~Ly 543 (680)
+..... +...... .......+ ++++|+..... .......++.+|+.+++...+..- ......++.. ++ .||
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 121 GDNLQDIIEDLSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLW 197 (333)
T ss_dssp SCSCEEEECSSSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEE
T ss_pred CCEEEEEEccCccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEE
Confidence 876552 2211111 11222223 67788864321 111235688999887776554211 0111222222 44 577
Q ss_pred EEcCCCCCCcCceeEEEeCCC--CcEEEec-----cCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 544 ATGGYDGNEYMNSAERFDPRE--HYWTKIA-----NMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t--~~W~~v~-----~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
+.... ...+++||+.+ .....+. ..+.......++.- ++.||+.... ...|.+||++...-.
T Consensus 198 v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~ 267 (333)
T 2dg1_A 198 VTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIG 267 (333)
T ss_dssp EEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEE
T ss_pred EEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEE
Confidence 76432 24688999854 2333221 11111112223332 5678776532 246899998655444
Q ss_pred Ec
Q 005735 616 SG 617 (680)
Q Consensus 616 ~v 617 (680)
.+
T Consensus 268 ~~ 269 (333)
T 2dg1_A 268 QI 269 (333)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 124
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.80 E-value=0.3 Score=50.93 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=98.5
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE---CCEEEEEecCCCCCccceEEEEeC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML---NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
+..+.+++..++.|+.++ .+.++|..+++-... +......-..+.+ +..+++.|+.++ .+.+||.
T Consensus 132 ~v~~spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~ 199 (344)
T 4gqb_B 132 TVSVLSSGTQAVSGSKDI-----CIKVWDLAQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDT 199 (344)
T ss_dssp EEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS-----CEEEEET
T ss_pred EEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEE--EcCcCCceEEEEecCCCCCceeeecccc-----ccccccc
Confidence 455666888888888653 578899988764332 1111112222222 345777787653 5888998
Q ss_pred CCCcEEECCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CC-EE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NG-VL 542 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g-~L 542 (680)
.+.+-...-..........++.+ ++++++.|+.++ .+.+||+.+++- +..+......-..+.+ ++ ++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCC
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeE
Confidence 87653222111111111122222 456888877553 477889886642 2111111111122233 33 56
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
++.|+.++ .|.+||..+++-..+. .+.....+++.. +..+++.||.++ .|.++++.+
T Consensus 273 lasgs~D~-----~i~vwd~~~~~~~~~~--~H~~~V~~v~~sp~~~~llas~s~D~-----~v~~w~v~~ 331 (344)
T 4gqb_B 273 LASLSEDC-----SLAVLDSSLSELFRSQ--AHRDFVRDATWSPLNHSLLTTVGWDH-----QVVHHVVPT 331 (344)
T ss_dssp EEEEETTS-----CEEEECTTCCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTS-----CEEEEECCC
T ss_pred EEEEeCCC-----eEEEEECCCCcEEEEc--CCCCCEEEEEEeCCCCeEEEEEcCCC-----eEEEEECCC
Confidence 66677654 5788998887644332 222223333332 345777788764 356666654
No 125
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.78 E-value=0.52 Score=47.64 Aligned_cols=192 Identities=12% Similarity=0.093 Sum_probs=95.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe----EEEcCCCCCCccceEEEEE-CCE-EEEEecCCCCCccceEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV----IKTLKPMSSARSYASAAML-NGE-LYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~----W~~l~~mp~~R~~~s~v~~-~~~-IyV~GG~~~~~~~~~v~ 464 (680)
.+..+.+++.+++.|+.+ ..+.+||..+.. ...+. .....-.+++.. ++. .++.|+.+ ..+.
T Consensus 15 ~~~~~s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 82 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQ-----GEIL 82 (342)
T ss_dssp EEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETT-----SCEE
T ss_pred EEEEEcCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCC-----CeEE
Confidence 345555566677777754 346777766554 32222 111222233333 666 67777755 3588
Q ss_pred EEeC-CCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc-------EEEcccccccccceEEE
Q 005735 465 SYSP-ANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK-------WIRTRSMLQKRFALAAA 536 (680)
Q Consensus 465 vyD~-~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~-------W~~i~~~p~~r~~~s~~ 536 (680)
+||. .+.....+...+....-.+.+...+.+++.|+.+ ..+.+||+.+.. ...+..+.......+++
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 9999 8887766544111111122333335555666544 346778776400 11222222222223333
Q ss_pred EECCEEEEEcCCCCCCcCceeEEEeCCC-Cc--EEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 537 ELNGVLYATGGYDGNEYMNSAERFDPRE-HY--WTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~~~~~~v~~yD~~t-~~--W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
...+. +++|+.+ ..+.+||..+ .. ..... .+......+++.. ++.+++.|+.++ .+.+||...
T Consensus 158 ~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~ 225 (342)
T 1yfq_A 158 TNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDG-----RVAVEFFDD 225 (342)
T ss_dssp ECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTS-----EEEEEECCT
T ss_pred ecCCc-EEEEeCC-----CeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCC-----cEEEEEEcC
Confidence 34455 5555544 3688999887 33 22221 1222222333333 467777777543 455555443
No 126
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.76 E-value=0.66 Score=46.72 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=92.9
Q ss_pred eEEEcCC-CEEEEEecCCCCcccCeEEEEeCCCCe---EEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEE
Q 005735 392 ELHLDPS-ESIYLVGGCDGDSWLSTLELYLPSCDV---IKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 392 ~~~v~~~-~~Iyv~GG~~~~~~~~~v~~yd~~t~~---W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~v 465 (680)
+..+.++ +.+++.||.++ .+.++|..+.. ......+......-..+.+ ++.+++.|+.++ .+..
T Consensus 43 ~v~~sp~~~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~-----~i~~ 112 (340)
T 4aow_A 43 QIATTPQFPDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG-----TLRL 112 (340)
T ss_dssp EEEECTTCTTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred EEEEeCCCCCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc-----cceE
Confidence 3445544 57888888754 35566654432 1111111111122222223 567777777653 4677
Q ss_pred EeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE----CCE
Q 005735 466 YSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL----NGV 541 (680)
Q Consensus 466 yD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~----~g~ 541 (680)
++........................++..++.|+.++ .+..||.....-......... .....+.+ .+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGVCKYTVQDESHS-EWVSCVRFSPNSSNP 186 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCEEEEECSSSCS-SCEEEEEECSCSSSC
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCCceEEEEecccc-CcccceEEccCCCCc
Confidence 77776655433222221111122222455556665443 345667654432222111111 11112222 234
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+++.|+.++ .+.+||..+......-.. ......+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 187 ~~~s~~~d~-----~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~ 248 (340)
T 4aow_A 187 IIVSCGWDK-----LVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGK 248 (340)
T ss_dssp EEEEEETTS-----CEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTE
T ss_pred EEEEEcCCC-----EEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCc
Confidence 556666553 578889887664433211 11222233322 56777788765 357888987654
No 127
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.72 E-value=0.26 Score=52.46 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=112.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+..+.+++.+++.|+.++ .+.++|..+++-..... .......+...++.+++.|+.+ ..+..+|..+
T Consensus 151 ~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~--~h~~~v~~~s~~~~~l~sgs~d-----~~i~~~d~~~ 218 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT--SHSARVGSLSWNSYILSSGSRS-----GHIHHHDVRV 218 (420)
T ss_dssp EEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC--CCSSCEEEEEEETTEEEEEETT-----SEEEEEETTS
T ss_pred EEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEe--CCCCceEEEeeCCCEEEEEeCC-----CceeEeeecc
Confidence 3556667788888887653 57888988876433322 2222333445577777777765 3566777665
Q ss_pred CcEEECCCCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccE--EEcccccccccc-eEEEEE--CCEEE
Q 005735 471 DEWTSRPSLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKW--IRTRSMLQKRFA-LAAAEL--NGVLY 543 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W--~~i~~~p~~r~~-~s~~~~--~g~Ly 543 (680)
...... .+........... -++..++.|+.++ .+.++|..++.- ..+......... .+++.. +..++
T Consensus 219 ~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 219 AEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp SSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred cceeeE-EecccccceeeeeecCCCCeeeeeeccc-----cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence 432111 0111111111111 2556666666543 355677665431 111111111111 111111 34444
Q ss_pred EE-cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCC
Q 005735 544 AT-GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM 620 (680)
Q Consensus 544 v~-GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~l 620 (680)
+. ||... ..|.+||..++.....-.... ...+++.. ++.+++..|..+ ..|.+||..+.+ .+..+
T Consensus 293 a~~~gs~D----~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~--~v~~l 360 (420)
T 4gga_A 293 ATGGGTSD----RHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMA--KVAEL 360 (420)
T ss_dssp EEEECTTT----CEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCC--EEEEE
T ss_pred EEEeecCC----CEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCc--EEEEE
Confidence 44 44321 368889998876544332222 12222222 456666656432 358899987643 23223
Q ss_pred CCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 621 KLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 621 p~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.........+.+ +++.++.||.++ +|.+|+.
T Consensus 361 ~gH~~~V~~l~~spdg~~l~S~s~D~------tvriWdv 393 (420)
T 4gga_A 361 KGHTSRVLSLTMSPDGATVASAAADE------TLRLWRC 393 (420)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTT------EEEEECC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEecCC------eEEEEEC
Confidence 221122222223 677888887654 4666654
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.71 E-value=1 Score=45.16 Aligned_cols=217 Identities=14% Similarity=0.143 Sum_probs=104.4
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC-eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD-VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~-~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
....+.+++..+++++..+ ..+.+||...+ ....+.........+.++.. +..||+.+..+ ..+.+||
T Consensus 87 ~~~~~s~dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d 157 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNA----GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ-----DRICLFT 157 (343)
T ss_dssp SEEEECTTSSEEEEEETTT----TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG-----TEEEEEE
T ss_pred cEEEEcCCCCEEEEEecCC----CeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC-----CEEEEEE
Confidence 4455666665444444321 34777776322 22222222222222333333 34677765332 3688999
Q ss_pred CCC-CcEEECC--CCCCC-CcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCC--CccEEEc---cccccc---ccc
Q 005735 468 PAN-DEWTSRP--SLNGT-KGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLD--IGKWIRT---RSMLQK---RFA 532 (680)
Q Consensus 468 ~~t-~~W~~l~--~lp~~-r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~--t~~W~~i---~~~p~~---r~~ 532 (680)
..+ .+..... ..... -.....+.+ +++ +|+.+..+ ..+.+||+. ++++... ..++.. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 887 6654322 11111 111222233 444 77765332 457788884 4554332 223321 112
Q ss_pred eEEEEE--CC-EEEEEcCCCCCCcCceeEEEeCC--CCcEEEeccCCCCCceeEEEEE-CC-EEEEEeccCCCCCCCeEE
Q 005735 533 LAAAEL--NG-VLYATGGYDGNEYMNSAERFDPR--EHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIE 605 (680)
Q Consensus 533 ~s~~~~--~g-~Lyv~GG~~~~~~~~~v~~yD~~--t~~W~~v~~~p~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~ 605 (680)
...+.+ ++ .||+.+..+ ..+.+||.. +++++.+...+.......++.. ++ .||+.++.+ +.+.
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~ 302 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHIS 302 (343)
T ss_dssp EEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEE
T ss_pred ccceEECCCCCEEEEEecCC-----CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC-----CeEE
Confidence 222333 33 677665433 367888877 5667776544433322233333 34 466554332 3344
Q ss_pred E--EeCCCCcEEEcCCCCCCccceEEEE
Q 005735 606 V--YDPRLGSWMSGEPMKLSRGYLGAAV 631 (680)
Q Consensus 606 ~--yD~~t~~W~~v~~lp~~R~~~s~v~ 631 (680)
+ +|+.+..++.+..++.+....+++.
T Consensus 303 v~~~d~~~g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 303 VYEIVGEQGLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp EEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred EEEEcCCCceeeEccccccCCCCeeEEE
Confidence 4 4888888988776655444444443
No 129
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.69 E-value=0.66 Score=48.83 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=99.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEE-cCCCC---------------CCccceEEEEE--CCEEEEEe
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKT-LKPMS---------------SARSYASAAML--NGELYIFG 452 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~-l~~mp---------------~~R~~~s~v~~--~~~IyV~G 452 (680)
.+..+.+++.+++.|+. ..+.+|+..++.... +.... ........+.+ +++.++.|
T Consensus 68 ~~v~fspdg~~la~g~~------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 68 CCVKFSNDGEYLATGCN------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CEEEECTTSSEEEEECB------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEEcC------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 45667778887777652 246778877765432 11100 00111222233 66777777
Q ss_pred cCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc
Q 005735 453 GGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR 530 (680)
Q Consensus 453 G~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r 530 (680)
+.+ ..+.+||..+.+-... +........++.+ ++..++.|+.+ ..+.+||+.+++....-.....
T Consensus 142 ~~d-----~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~- 208 (393)
T 1erj_A 142 AED-----RLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSLTLSIEDG- 208 (393)
T ss_dssp ETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSSC-
T ss_pred cCC-----CeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCeeEEEEEcCCC-
Confidence 765 3588899887754322 1111111112222 55666666654 3577889988765432221111
Q ss_pred cceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC------CCCCceeEEEEE-CCEEEEEeccCCCCCC
Q 005735 531 FALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM------NRRRGCHSLAVL-NGKLYALGGFDGSAMV 601 (680)
Q Consensus 531 ~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~------p~~r~~~s~v~~-~~~IyviGG~~~~~~~ 601 (680)
..+++.. ++++++.|+.++ .+.+||..++.-...-.. .......+++.. ++..++.|+.+
T Consensus 209 -v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d----- 277 (393)
T 1erj_A 209 -VTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD----- 277 (393)
T ss_dssp -EEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred -cEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC-----
Confidence 1122222 577888887764 578899887654332111 111112223322 56677777765
Q ss_pred CeEEEEeCCCC
Q 005735 602 PSIEVYDPRLG 612 (680)
Q Consensus 602 ~~v~~yD~~t~ 612 (680)
..+.+||+.+.
T Consensus 278 ~~v~~wd~~~~ 288 (393)
T 1erj_A 278 RSVKLWNLQNA 288 (393)
T ss_dssp SEEEEEEC---
T ss_pred CEEEEEECCCC
Confidence 35788887653
No 130
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.67 E-value=0.16 Score=53.18 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=101.0
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++..++.|+.++ .+.+||..+++....-..... ...+++.. ++.+++.||.++ .+.+||..
T Consensus 144 ~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~~~s~~~dg-----~v~~wd~~ 212 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDF-----SVKVWDLSQKAVLKSYNAHSS-EVNCVAACPGKDTIFLSCGEDG-----RILLWDTR 212 (357)
T ss_dssp EEEECSSSSEEEEEETTS-----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTCSSCEEEEETTS-----CEEECCTT
T ss_pred EEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCceeeeeccCC-----ceEEEECC
Confidence 455666788888888653 478889988764433211111 11222222 335777777653 47888887
Q ss_pred CCcEEECCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--C-CEEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--N-GVLY 543 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~-g~Ly 543 (680)
+.+-..............++.+ ++.+++.|+.++ .+.+||+.+.+-.. .+.........+.+ + ++++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~l 285 (357)
T 4g56_B 213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPDSAQ--TSAVHSQNITGLAYSYHSSPFL 285 (357)
T ss_dssp SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGGGCE--EECCCSSCEEEEEECSSSSCCE
T ss_pred CCceeeeeeeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCcEeE--EEeccceeEEEEEEcCCCCCEE
Confidence 7653222122112222223333 356777776543 46788887764211 11111111122222 3 3566
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
+.|+.++ .+.+||..+++.... +.......+++.. ++.+++.||.++ .|.+||+.+
T Consensus 286 asgs~D~-----~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l~s~s~Dg-----~v~iW~~~~ 343 (357)
T 4g56_B 286 ASISEDC-----TVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKFTTVGWDH-----KVLHHHLPS 343 (357)
T ss_dssp EEEETTS-----CEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTS-----CEEEEECC-
T ss_pred EEEeCCC-----EEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEEEEEcCCC-----eEEEEECCC
Confidence 6676654 588999888764433 2333333344432 577788888764 467777643
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.66 E-value=0.61 Score=52.13 Aligned_cols=239 Identities=8% Similarity=0.007 Sum_probs=118.8
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC--CC
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP--AN 470 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~--~t 470 (680)
+.+++.+|+.+..+ ..+.++|..+++.... ++.....|.++.. +..||+.+. + +.+.+||. .+
T Consensus 145 ~~p~~~~~vs~~~d-----~~V~v~D~~t~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t 211 (543)
T 1nir_A 145 LDLPNLFSVTLRDA-----GQIALVDGDSKKIVKV--IDTGYAVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAKE 211 (543)
T ss_dssp CCGGGEEEEEEGGG-----TEEEEEETTTCCEEEE--EECSTTEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSS
T ss_pred cCCCCEEEEEEcCC-----CeEEEEECCCceEEEE--EecCcccceEEECCCCCEEEEECC-C-----CeEEEEECcCCC
Confidence 44577888877643 4688899988765332 1112224444333 456776653 2 57999999 66
Q ss_pred CcEEECCCCCCCCcccEEEEE-----CCE-EEEEccCCCCcccceEEEEeCCCccEEEc-c--cc--------cccccce
Q 005735 471 DEWTSRPSLNGTKGSLAGATI-----DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRT-R--SM--------LQKRFAL 533 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~-----~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i-~--~~--------p~~r~~~ 533 (680)
.+- +..++....-...+.. +|+ +|+... ..+.+.++|..+.+-... + .+ +.++...
T Consensus 212 ~~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~-----~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 212 PTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAY-----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp CEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred CcE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEc-----cCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 543 2222222222223332 454 555431 235677889887653222 1 11 1112221
Q ss_pred EEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCC
Q 005735 534 AAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 534 s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~ 610 (680)
..... ++.+|+.... ...++++|..+..-..+..++..+..+.++.. +++ +|+.+.. .+.|.++|..
T Consensus 285 i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~ 354 (543)
T 1nir_A 285 IIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSK 354 (543)
T ss_dssp EEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETT
T ss_pred EEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEEECC
Confidence 12222 3455554332 24788999876432222222233333444433 454 5554432 2568899999
Q ss_pred CCcEEE---cCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC--C----CeEecccCC
Q 005735 611 LGSWMS---GEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG--Q----GWEEINSRA 668 (680)
Q Consensus 611 t~~W~~---v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~--~----~W~~v~~~p 668 (680)
+++-.. +...|.+........- ++.+|+.+.... .+|-+|+.. + .|+.+..++
T Consensus 355 tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d-----~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 355 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-----GSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp TTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred CCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC-----ceEEEEEeCCCCCchhcCeEEEEEE
Confidence 876543 2334444333332211 367887765433 246666543 1 276655544
No 132
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.65 E-value=0.61 Score=48.24 Aligned_cols=152 Identities=11% Similarity=-0.048 Sum_probs=79.8
Q ss_pred cceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEE
Q 005735 460 HNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAA 536 (680)
Q Consensus 460 ~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~ 536 (680)
...++++|..+++...+... .......+.. +++ |++............++.+|+.+..+..+.. ..+.......
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~ 243 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHE 243 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEE
T ss_pred cceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccce
Confidence 35789999998877665421 1111122222 344 4444321111122578899998888776654 2111112222
Q ss_pred EE--CCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCC-----------CCCC
Q 005735 537 EL--NGV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDG-----------SAMV 601 (680)
Q Consensus 537 ~~--~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~-----------~~~~ 601 (680)
.+ +++ |+..+ .........++++|+.+++.+.+...+. .. ....- +++++++++.+. ....
T Consensus 244 ~~spdg~~l~~~~-~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 244 FWIPDGSAMAYVS-YFKGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EECTTSSCEEEEE-EETTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred EECCCCCEEEEEe-cCCCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 22 454 44442 2211222349999999888777765442 11 22223 666666654321 0123
Q ss_pred CeEEEEeCCCCcEEEcC
Q 005735 602 PSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 602 ~~v~~yD~~t~~W~~v~ 618 (680)
..++++|+.++....+.
T Consensus 320 ~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CEEEEEETTTTBCCEEE
T ss_pred CcEEEEecccCceEEcc
Confidence 57999999887765553
No 133
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.3 Score=51.02 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=115.6
Q ss_pred eEEEcCCCE-EEEEecCCCC-----cccCeEEEEeCCCCeEE-EcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceE
Q 005735 392 ELHLDPSES-IYLVGGCDGD-----SWLSTLELYLPSCDVIK-TLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 392 ~~~v~~~~~-Iyv~GG~~~~-----~~~~~v~~yd~~t~~W~-~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v 463 (680)
+....+++. +++.|...+. ..-..+.+||..+..-. .+..........+++.. ++.+++.|+.++ .+
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~v 91 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG-----SL 91 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS-----CE
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC-----eE
Confidence 344455554 7777744321 22345788888765422 12222221222222222 566777776543 57
Q ss_pred EEEeCCC----C-cEEECCCCCCCCcccEEEEE-C-CEEEEEccCCCCcccceEEEEeCCCcc------EE-Ecccccc-
Q 005735 464 ESYSPAN----D-EWTSRPSLNGTKGSLAGATI-D-NKIFAIGGGNGLECFSDVEMLDLDIGK------WI-RTRSMLQ- 528 (680)
Q Consensus 464 ~vyD~~t----~-~W~~l~~lp~~r~~~a~~v~-~-gkIyV~GG~~~~~~~~~ve~yD~~t~~------W~-~i~~~p~- 528 (680)
.+||..+ . .-..+.... ..-.+++.. + +.+++.|+.++ .+.+||+.+.. -. .+.....
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHS--SSVKTVKFNAKQDNVLASGGNNG-----EIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSS--SCCCEEEECSSSTTBEEEECSSS-----CEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EEeecccccccccchhhccCCc--cceEEEEEcCCCCCEEEEEcCCC-----eEEEEECCCCccccccccccccccccCC
Confidence 8888876 1 222222111 111222222 2 66777776543 46788887764 11 1111111
Q ss_pred cccceEEEEE-C-CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCC-----CCceeEEEEE-C-CEEEEEeccCCCC
Q 005735 529 KRFALAAAEL-N-GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR-----RRGCHSLAVL-N-GKLYALGGFDGSA 599 (680)
Q Consensus 529 ~r~~~s~~~~-~-g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~-----~r~~~s~v~~-~-~~IyviGG~~~~~ 599 (680)
.....+++.. + +.+++.|+.++ .+.+||..+......-.... ......++.. + ..+++.|+.++.
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~- 238 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN- 238 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-
Confidence 1112222222 2 56778777654 58899998876544433221 2222333333 3 357777765431
Q ss_pred CCCeEEEEeCCCCcEEEcCCCC-CCccceEEEEE---CCEEEEEecccCCCcccceEEEEcCC
Q 005735 600 MVPSIEVYDPRLGSWMSGEPMK-LSRGYLGAAVV---KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 600 ~~~~v~~yD~~t~~W~~v~~lp-~~R~~~s~v~~---~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
...+.+||+.+..- .+..+. ........+.+ ++.+++.|+.++ .+.+|+..
T Consensus 239 -~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg------~v~~wd~~ 293 (416)
T 2pm9_A 239 -DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN------TVLLWNPE 293 (416)
T ss_dssp -SCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS------EEEEECSS
T ss_pred -CceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCC------CEEEeeCC
Confidence 12577889876421 111222 11122222233 567777777643 35666654
No 134
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.63 E-value=0.46 Score=49.28 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=112.7
Q ss_pred EEEEEecCCCCcccCeEEEEeCCCCe-------EEEcCCCCCCccceEEEEE-C----C---EEEEEecCCCCCccceEE
Q 005735 400 SIYLVGGCDGDSWLSTLELYLPSCDV-------IKTLKPMSSARSYASAAML-N----G---ELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 400 ~Iyv~GG~~~~~~~~~v~~yd~~t~~-------W~~l~~mp~~R~~~s~v~~-~----~---~IyV~GG~~~~~~~~~v~ 464 (680)
.+++.|+.+ ..+.+||..+.. ...+.... ..-.+++.. + + .+++.|+.++ .+.
T Consensus 27 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~g~~~~~l~s~~~dg-----~i~ 94 (397)
T 1sq9_A 27 SFTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCLVATTSFSG-----DLL 94 (397)
T ss_dssp SEEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEEEEEEEETTS-----CEE
T ss_pred CeEEEEcCC-----CEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEecccccCCccccEEEEEcCCC-----CEE
Confidence 577777754 357888887765 33332111 112222222 4 6 7778887653 477
Q ss_pred EEeCCCCc------EEECCCCCCC---CcccEEEEE-----CCEE-EEEccCCCCcccceEEEEeCCC------cc---E
Q 005735 465 SYSPANDE------WTSRPSLNGT---KGSLAGATI-----DNKI-FAIGGGNGLECFSDVEMLDLDI------GK---W 520 (680)
Q Consensus 465 vyD~~t~~------W~~l~~lp~~---r~~~a~~v~-----~gkI-yV~GG~~~~~~~~~ve~yD~~t------~~---W 520 (680)
+||..+.. +..+...+.. ..-.+++.. ++.. ++.|+.++ .+.+||+.+ .+ |
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-----CEEEEEEESSSSHHHHTTTCC
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cEEEEeCCccccccccceeec
Confidence 88877665 6665443311 112223333 4556 77776543 466777766 32 1
Q ss_pred EEcccc-------c-ccccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC--C---CCceeEEEEE-
Q 005735 521 IRTRSM-------L-QKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN--R---RRGCHSLAVL- 585 (680)
Q Consensus 521 ~~i~~~-------p-~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p--~---~r~~~s~v~~- 585 (680)
.....+ . ......+++.. ++ ++++|+.++ .+.+||..+.+....-... . .....+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-----cEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 111011 0 11112222222 46 777776553 6889999876543332220 1 2222222222
Q ss_pred CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE-cCCCCC----------CccceEEEEE--CCEEEEEecccCCCcccceE
Q 005735 586 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-GEPMKL----------SRGYLGAAVV--KEAIYVIGGVKNGSEIVDTV 652 (680)
Q Consensus 586 ~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~-v~~lp~----------~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~v 652 (680)
++.+++.|+.++ ....+.+||+.+..-.. +...+. .......+.+ ++.+++.|+.++ .+
T Consensus 244 ~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i 315 (397)
T 1sq9_A 244 QGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG------KL 315 (397)
T ss_dssp STTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS------EE
T ss_pred CCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC------eE
Confidence 566677776431 11368899987764322 221000 1122222333 567777777543 47
Q ss_pred EEEcCC
Q 005735 653 ERFKEG 658 (680)
Q Consensus 653 e~y~~~ 658 (680)
.+|+..
T Consensus 316 ~iwd~~ 321 (397)
T 1sq9_A 316 RFWDVK 321 (397)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 777764
No 135
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.62 E-value=0.68 Score=54.02 Aligned_cols=212 Identities=11% Similarity=0.194 Sum_probs=117.9
Q ss_pred EEEcCCCE-EEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC---CccceEEEEE-CCEEEEEecCCCCCccceEEEEe
Q 005735 393 LHLDPSES-IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS---ARSYASAAML-NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 393 ~~v~~~~~-Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~---~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
.....++. |++ |..+ .-+++||+.++++........ ...-.+++.. ++.|++... . .+++||
T Consensus 411 i~~d~~g~~lWi-gt~~-----~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~------Gl~~~~ 477 (795)
T 4a2l_A 411 VYVDEKKSLVYI-GTHA-----GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S------ALVRFN 477 (795)
T ss_dssp EEEETTTTEEEE-EETT-----TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S------CEEEEE
T ss_pred EEEcCCCCEEEE-EeCc-----CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C------ceeEEe
Confidence 33344666 665 3221 238999999998877653211 1122223322 567777543 2 388999
Q ss_pred CCCCcEEECCCCC----CCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEccc------ccccccceEE
Q 005735 468 PANDEWTSRPSLN----GTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS------MLQKRFALAA 535 (680)
Q Consensus 468 ~~t~~W~~l~~lp----~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~------~p~~r~~~s~ 535 (680)
+.+++|+...... .......+... +|.||+... ..+.+||+.++++ .... ++.. ...++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i 548 (795)
T 4a2l_A 478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCI 548 (795)
T ss_dssp TTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEE
T ss_pred CCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEE
Confidence 9999998875331 11111112222 567887532 3478899988888 4321 1111 12222
Q ss_pred EE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc---CCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 536 AE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 536 ~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~---~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
+. -+|.||+... ..+.+||+.+++++.... +|... ..+++.- +|.|++.+. ..+..||++
T Consensus 549 ~~d~~g~lWigT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~ 613 (795)
T 4a2l_A 549 YEASNGIIWVGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPE 613 (795)
T ss_dssp EECTTSCEEEEES-------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETT
T ss_pred EECCCCCEEEEeC-------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCC
Confidence 22 2577887432 147899999998887642 33322 2333332 567877652 458899999
Q ss_pred CCcEEEcC---CCCCCccce-EEEEE-CCEEEEEecc
Q 005735 611 LGSWMSGE---PMKLSRGYL-GAAVV-KEAIYVIGGV 642 (680)
Q Consensus 611 t~~W~~v~---~lp~~R~~~-s~v~~-~~~lyV~GG~ 642 (680)
+.++.... .++...... +++.. ++.||+ ||.
T Consensus 614 ~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~ 649 (795)
T 4a2l_A 614 TEKFRNFTESDGLQSNQFNTASYCRTSVGQMYF-GGI 649 (795)
T ss_dssp TTEEEEECGGGTCSCSCEEEEEEEECTTSCEEE-EET
T ss_pred CCcEEEcCCcCCCccccCccCceeECCCCeEEE-ecC
Confidence 99988753 344443322 33333 455554 554
No 136
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.60 E-value=1.2 Score=50.90 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=98.0
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
+..+.+++.+++.|+.+ ..+.++|..++.-...-.-.. ..-.+++.. ++..++.|+.++ .+.++|...
T Consensus 435 ~v~~s~~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~ 503 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWD-----GELRLWDLAAGVSTRRFVGHT-KDVLSVAFSLDNRQIVSASRDR-----TIKLWNTLG 503 (694)
T ss_dssp EEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSSCEEEEETTS-----CEEEECTTS
T ss_pred EEEECCCCCEEEEEeCC-----CcEEEEECCCCcceeEEeCCC-CCEEEEEEeCCCCEEEEEeCCC-----EEEEEECCC
Confidence 45566677777778765 357888888765432211111 111222222 566667777653 577788655
Q ss_pred CcEEEC-CCCCCCCcccEEEEE--CC--EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEE
Q 005735 471 DEWTSR-PSLNGTKGSLAGATI--DN--KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLY 543 (680)
Q Consensus 471 ~~W~~l-~~lp~~r~~~a~~v~--~g--kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Ly 543 (680)
..-..+ ......+....++.+ ++ .+++.|+.++ .+.+||+.+.+-... +........++.+ +++++
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEE
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEE
Confidence 432222 111111222223333 22 3566666543 477888887654322 1111111122222 67788
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
+.|+.++ .+.+||..+.+-. ..+.......+++.. ++.+++. +.+ ..+.+||+.+..-.
T Consensus 577 ~sg~~Dg-----~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~-~~~-----~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 577 ASGGKDG-----VVLLWDLAEGKKL--YSLEANSVIHALCFSPNRYWLCA-ATE-----HGIKIWDLESKSIV 636 (694)
T ss_dssp EEEETTS-----BCEEEETTTTEEE--ECCBCSSCEEEEEECSSSSEEEE-EET-----TEEEEEETTTTEEE
T ss_pred EEEeCCC-----eEEEEECCCCceE--EEecCCCcEEEEEEcCCCcEEEE-EcC-----CCEEEEECCCCCCh
Confidence 8887764 6788998877532 222222233344433 3444444 432 34889998876543
No 137
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.59 E-value=1.6 Score=46.17 Aligned_cols=181 Identities=15% Similarity=0.283 Sum_probs=91.2
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 491 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~ 491 (680)
+.++++|..++....+-.+......-.++.+ ++..++.|+.++ .+.+||..+++-... +........+...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~--~~~h~~~v~~~s~ 197 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRN--MTSHSARVGSLSW 197 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEE--EeCCCCceEEEee
Confidence 4699999999887665444433333333333 567777887663 588999988754322 2222223344555
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEE--ECCEEEEEcCCCCCCcCceeEEEeCCCCc--E
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE--LNGVLYATGGYDGNEYMNSAERFDPREHY--W 567 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~--~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W 567 (680)
++.+++.|+.++ .+..+|......... .+........... -++..++.|+.++ .+.++|..+.. +
T Consensus 198 ~~~~l~sgs~d~-----~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~~~~~~~~ 266 (420)
T 4gga_A 198 NSYILSSGSRSG-----HIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGGW 266 (420)
T ss_dssp ETTEEEEEETTS-----EEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCCSSCS
T ss_pred CCCEEEEEeCCC-----ceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeeccc-----cceEEeeccccccc
Confidence 777777777543 455666665432211 1111111111111 1556666666553 46677765543 1
Q ss_pred EEeccCC-CCCceeEEEEE--CCEEEEE-eccCCCCCCCeEEEEeCCCCcEEE
Q 005735 568 TKIANMN-RRRGCHSLAVL--NGKLYAL-GGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 568 ~~v~~~p-~~r~~~s~v~~--~~~Iyvi-GG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
..+.... ......+++.. +..+++. ||..+ ..|.+||+.+..-..
T Consensus 267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLS 315 (420)
T ss_dssp CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEEE
T ss_pred eeeeeecccCCceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccce
Confidence 1111111 11111122222 3344444 44322 358899998875443
No 138
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.56 E-value=0.41 Score=48.54 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=98.3
Q ss_pred ceEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-C---CEEEEEecCCCCCccceEEE
Q 005735 391 DELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-N---GELYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 391 ~~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~---~~IyV~GG~~~~~~~~~v~v 465 (680)
.+..+.+++ .+++.|+... ....+.+||..++.............-.+++.. + +.+++.|+.++ .+.+
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i 94 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG-----NLHI 94 (357)
T ss_dssp EEEEECTTSSEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS-----CEEE
T ss_pred EEEEEcCCCceEEEecCccC--CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC-----eEEE
Confidence 345555545 6666776410 123578888888765543222111122222222 2 47777777653 5788
Q ss_pred EeCCCCc--EEECCCCCCCCcccEEEE-------ECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccc--cccc
Q 005735 466 YSPANDE--WTSRPSLNGTKGSLAGAT-------IDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQ--KRFA 532 (680)
Q Consensus 466 yD~~t~~--W~~l~~lp~~r~~~a~~v-------~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~--~r~~ 532 (680)
||..+.. ...+..... .-.+... -++..++.|+.++ .+.+||+.+.. ...+..... .+..
T Consensus 95 wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp ECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred EeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCCCCCCcceeccccCCCCCCce
Confidence 8887654 111111000 0111111 2456667766543 47788888764 233322111 1122
Q ss_pred eEEEE-----ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE----CCEEEEEeccCCCCCCCe
Q 005735 533 LAAAE-----LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL----NGKLYALGGFDGSAMVPS 603 (680)
Q Consensus 533 ~s~~~-----~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~----~~~IyviGG~~~~~~~~~ 603 (680)
.+++. -++.+++.|+.++ .+.+||..+..-....... ....+++.. ++..++.|+.+ ..
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~d-----g~ 235 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNG-----DIKLFDLRNMALRWETNIK--NGVCSLEFDRKDISMNKLVATSLE-----GK 235 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTS-----EEEEEETTTTEEEEEEECS--SCEEEEEESCSSSSCCEEEEEEST-----TE
T ss_pred EEEEEEeccCCCCCEEEEEccCC-----eEEEEECccCceeeecCCC--CceEEEEcCCCCCCCCEEEEECCC-----Ce
Confidence 22221 3677777776553 6889999887654332222 222333333 45667777654 35
Q ss_pred EEEEeCCC
Q 005735 604 IEVYDPRL 611 (680)
Q Consensus 604 v~~yD~~t 611 (680)
+.+||..+
T Consensus 236 i~i~d~~~ 243 (357)
T 3i2n_A 236 FHVFDMRT 243 (357)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCcC
Confidence 77888754
No 139
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.19 Score=58.53 Aligned_cols=188 Identities=13% Similarity=0.192 Sum_probs=103.8
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--C--CEEEEEccCCCCcccceEEEEeCCCccE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--D--NKIFAIGGGNGLECFSDVEMLDLDIGKW 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~--gkIyV~GG~~~~~~~~~ve~yD~~t~~W 520 (680)
++..++.||.+ ..+.+||..++++.....+......-.++.+ + +..++.|+.++ .+.+||+.+++|
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~~~~~ 89 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEENGRW 89 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEETTEE
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEECCCCcc
Confidence 45566667655 3578888877777665544433333333333 3 67777777653 477899999888
Q ss_pred EEcccccccccceEEEEE--C--CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC-CCCCceeEEEEE----------
Q 005735 521 IRTRSMLQKRFALAAAEL--N--GVLYATGGYDGNEYMNSAERFDPREHYWTKIANM-NRRRGCHSLAVL---------- 585 (680)
Q Consensus 521 ~~i~~~p~~r~~~s~~~~--~--g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~-p~~r~~~s~v~~---------- 585 (680)
..+..+........++.+ + +.++++|+.++ .+.+||..+..-.....+ .......+++..
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 766544433333333333 3 67788887664 678888876521111101 111111222221
Q ss_pred ----CCEEEEEeccCCCCCCCeEEEEeCCCC--cEEEcCCCCCCccceEEEEE--C---CEEEEEecccCCCcccceEEE
Q 005735 586 ----NGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSGEPMKLSRGYLGAAVV--K---EAIYVIGGVKNGSEIVDTVER 654 (680)
Q Consensus 586 ----~~~IyviGG~~~~~~~~~v~~yD~~t~--~W~~v~~lp~~R~~~s~v~~--~---~~lyV~GG~~~~~~~~~~ve~ 654 (680)
++.+++.|+.++ .|.+||..+. .+..+..+.........+.+ + +.+++.||.++ .+.+
T Consensus 165 ~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg------~I~i 233 (753)
T 3jro_A 165 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR------TCII 233 (753)
T ss_dssp --CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS------CEEE
T ss_pred ccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC------EEEE
Confidence 356777777653 4777776543 44444333332222333333 3 68888888765 3666
Q ss_pred EcCC
Q 005735 655 FKEG 658 (680)
Q Consensus 655 y~~~ 658 (680)
|+..
T Consensus 234 wd~~ 237 (753)
T 3jro_A 234 WTQD 237 (753)
T ss_dssp EEES
T ss_pred ecCC
Confidence 6644
No 140
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.51 E-value=0.92 Score=45.92 Aligned_cols=193 Identities=7% Similarity=0.032 Sum_probs=96.2
Q ss_pred cceEEEcCC---CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEE
Q 005735 390 SDELHLDPS---ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 390 ~~~~~v~~~---~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~ 464 (680)
..+..+.++ +.+++.|+.++ .+.+||..+........+......-..+.+ ++..++.|+.+ ..+.
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~ 111 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTAK 111 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcEE
Confidence 345666666 58888888653 477788776222211111111112222223 56666677655 3688
Q ss_pred EEeCCCCcEEECCCCCCCCcccEEEE---ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCE
Q 005735 465 SYSPANDEWTSRPSLNGTKGSLAGAT---IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGV 541 (680)
Q Consensus 465 vyD~~t~~W~~l~~lp~~r~~~a~~v---~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~ 541 (680)
+||..+.+........ ..-.+.+. -++.+++.|+.+ ..+.+||+.+++-... +.......+.......
T Consensus 112 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~ 182 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMMV--LQLPERCYCADVIYPM 182 (368)
T ss_dssp EEETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSEE--EECSSCEEEEEEETTE
T ss_pred EEEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEEE--EecCCCceEEEecCCe
Confidence 9999888765432211 11122222 256777777654 3577899887652211 1111223333444555
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEECC----EEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVLNG----KLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~~~----~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
+++.++ + ..+.+||..... +..+...............+. ..++.|+.+ ..+.+||....
T Consensus 183 ~~~~~~-~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~ 248 (368)
T 3mmy_A 183 AVVATA-E-----RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE-----GRVAIHYINPP 248 (368)
T ss_dssp EEEEEG-G-----GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT-----SEEEEEESSCS
T ss_pred eEEEeC-C-----CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC-----CcEEEEecCCC
Confidence 544433 2 257778776543 333322211111111112221 236666654 45778887764
No 141
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.51 E-value=2.7 Score=43.32 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=128.5
Q ss_pred hhhhhhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCC-CC-CccceEEEEECCEEEEEecCC
Q 005735 378 TKECMYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPM-SS-ARSYASAAMLNGELYIFGGGD 455 (680)
Q Consensus 378 ~~~~~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~m-p~-~R~~~s~v~~~~~IyV~GG~~ 455 (680)
.|.............+.....+.+|++|-. ..+++-.-.-.+|+.+... +. .....++...++.+|++|..
T Consensus 26 ~W~~~~~~~~~~~~~v~~~~~~~~~~~G~~------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~- 98 (327)
T 2xbg_A 26 PWEAIQLPTTATILDMSFIDRHHGWLVGVN------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP- 98 (327)
T ss_dssp CEEEEECSCSSCEEEEEESSSSCEEEEETT------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-
T ss_pred CceEeecCCCCcEEEEEECCCCcEEEEcCC------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-
Confidence 364443222233444555557778886642 1244444444589988542 22 22344555567889987642
Q ss_pred CCCccceEEEEeCCCCcEEECCCCC-CCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccce
Q 005735 456 GNSWHNTVESYSPANDEWTSRPSLN-GTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFAL 533 (680)
Q Consensus 456 ~~~~~~~v~vyD~~t~~W~~l~~lp-~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~ 533 (680)
..+++-.-.-.+|+.+.... .+-.....+. -++.+|+.|... .++.-+-.-.+|+.+...... ..+
T Consensus 99 -----g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~~~~~~-~~~ 166 (327)
T 2xbg_A 99 -----PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVG------AIYRTKDSGKNWQALVQEAIG-VMR 166 (327)
T ss_dssp -----TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTC------CEEEESSTTSSEEEEECSCCC-CEE
T ss_pred -----CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCc------cEEEEcCCCCCCEEeecCCCc-ceE
Confidence 13454444457899986432 1211223333 367888876421 233322234579887542222 223
Q ss_pred EEEEE-CCEEEEEcCCCCCCcCceeEEEeCC-CCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 534 AAAEL-NGVLYATGGYDGNEYMNSAERFDPR-EHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 534 s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~-t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
.++.. ++.+|++|. .+ .+++-+-. -.+|+.+.. +.....+.++.. ++.+|+++.. ..++..+.+
T Consensus 167 ~~~~~~~~~~~~~g~-~G-----~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D 233 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RG-----SFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPD 233 (327)
T ss_dssp EEEECTTSCEEEEET-TS-----SEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEETT------TEEEEEETT
T ss_pred EEEEcCCCcEEEEEC-CC-----cEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeCC------ceEEEecCC
Confidence 33333 566776653 21 34444322 578999854 333444444433 5678877641 234554333
Q ss_pred -CCcEEEcCC--CCCCccceEEEEE-CCEEEEEecccCCCcccceEEE-EcCCCCeEecc
Q 005735 611 -LGSWMSGEP--MKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVER-FKEGQGWEEIN 665 (680)
Q Consensus 611 -t~~W~~v~~--lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~-y~~~~~W~~v~ 665 (680)
..+|..+.. ++.....++++.. ++.+|+.|+.. .++. .|-+.+|..+.
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g-------~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG-------ALLCSQDGGQTWQQDV 286 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT-------CEEEESSTTSSCEECG
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC-------eEEEeCCCCcccEEcC
Confidence 568988753 2332233444433 56788887621 2322 23348999875
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.40 E-value=0.5 Score=57.72 Aligned_cols=222 Identities=11% Similarity=0.100 Sum_probs=111.5
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++.+++.||.++ .+.+||..++..... +......-..+.+ ++..++.|+.+ ..+.+||.
T Consensus 619 ~~~~~s~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~ 686 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGADK-----TLQVFKAETGEKLLD--IKAHEDEVLCCAFSSDDSYIATCSAD-----KKVKIWDS 686 (1249)
T ss_dssp EEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCC-----eEEEEECCCCCEEEE--eccCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEC
Confidence 3456777888888887653 588899888764322 1111222222223 56677777754 36889999
Q ss_pred CCCcEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVL 542 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~L 542 (680)
.+++.... +........++.+ ++.+++.|+.+ ..+.+||+.+++-...-. .......++.+ ++..
T Consensus 687 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 687 ATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSND-----FFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp TTCCEEEE--EECCSSCEEEEEECSSSSCCEEEEEETT-----SCEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTE
T ss_pred CCCceEEE--EcCCCCcEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCcchhheec--CCCCCEEEEEEecCCCE
Confidence 88754322 1111122222233 33456666544 347789988876433211 11111112222 5667
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCC------------CCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeC
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNR------------RRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDP 609 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~------------~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~ 609 (680)
++.|+.++ .+.+||..+..-...-.... .....+++. -++..+++++ .+.+.+||.
T Consensus 758 l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------~~~v~~~d~ 826 (1249)
T 3sfz_A 758 LASCSADG-----TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA------KNKVLLFDI 826 (1249)
T ss_dssp EEEEESSS-----EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE------TTEEEEEET
T ss_pred EEEEECCC-----eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc------CCcEEEEEe
Confidence 77777654 67888887665332211110 001111111 1455555554 246889998
Q ss_pred CCCcEEEcCCCCCCccceEEEEE-CCEEEEEecccC
Q 005735 610 RLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKN 644 (680)
Q Consensus 610 ~t~~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~ 644 (680)
.+......-.........+++.. ++.++++|+.++
T Consensus 827 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 862 (1249)
T 3sfz_A 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY 862 (1249)
T ss_dssp TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS
T ss_pred cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC
Confidence 87765443221111111222222 566666666543
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.32 E-value=1 Score=45.47 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=98.6
Q ss_pred eEEEcCCCE-EEEEecCCCCcccCeEEEEeCCCCeE--EEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 392 ELHLDPSES-IYLVGGCDGDSWLSTLELYLPSCDVI--KTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 392 ~~~v~~~~~-Iyv~GG~~~~~~~~~v~~yd~~t~~W--~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
...+.+++. +|+.+..+ ..++++|+.++.. ..+.....+. ++++.. +..|| .+...+. ...+.+|
T Consensus 44 ~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~~~--~~~i~v~ 113 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEGQSSM--ADVDITPDDQFAV-TVTGLNH--PFNMQSY 113 (331)
T ss_dssp EEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEECSSCC--CCEEECTTSSEEE-ECCCSSS--SCEEEEE
T ss_pred eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccCCCCc--cceEECCCCCEEE-EecCCCC--cccEEEE
Confidence 566666665 66655432 3789999988764 2222222222 212222 44566 3332211 1279999
Q ss_pred eCCCCcEEECCCCCCCCcccEEEEE-CCE-EEEEccCCCCcccce-EEEEeCCCcc-EEEc--ccccccccceEEEEE--
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGATI-DNK-IFAIGGGNGLECFSD-VEMLDLDIGK-WIRT--RSMLQKRFALAAAEL-- 538 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v~-~gk-IyV~GG~~~~~~~~~-ve~yD~~t~~-W~~i--~~~p~~r~~~s~~~~-- 538 (680)
|..+++....-+ .....+..+.. +++ +|+.+... .. +.+|+..... .... ..++... ....+.+
T Consensus 114 d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~sp 185 (331)
T 3u4y_A 114 SFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQEFISGGT-RPFNITFTP 185 (331)
T ss_dssp ETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEEEEECSSS-SEEEEEECT
T ss_pred ECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCCccccCCC-CccceEECC
Confidence 999887644322 11222333333 454 77775432 23 6667665422 1111 1111111 1222333
Q ss_pred CC-EEEEEcCCCCCCcCceeEEEeCCCCcE-EEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 539 NG-VLYATGGYDGNEYMNSAERFDPREHYW-TKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 539 ~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W-~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
++ .+|+.+..+ ..+.+||+.+.+. +.+..++.......++.. +++ ||+.... .+.+.+||+.+.+.
T Consensus 186 dg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 186 DGNFAFVANLIG-----NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTL 255 (331)
T ss_dssp TSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEE
T ss_pred CCCEEEEEeCCC-----CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCce
Confidence 44 477765433 4789999987765 112222222222333333 444 6666432 24588999998887
Q ss_pred EEc
Q 005735 615 MSG 617 (680)
Q Consensus 615 ~~v 617 (680)
..+
T Consensus 256 ~~~ 258 (331)
T 3u4y_A 256 SFV 258 (331)
T ss_dssp EEE
T ss_pred eee
Confidence 554
No 144
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.31 E-value=0.78 Score=48.01 Aligned_cols=234 Identities=14% Similarity=0.183 Sum_probs=115.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+..+.+++..++.|+.++ .+.++|..+..-...-..........+..-++..++.||.++ .+.+||..+
T Consensus 70 ~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~-----~v~iw~~~~ 139 (380)
T 3iz6_a 70 YSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS-----ACSIFNLSS 139 (380)
T ss_dssp EEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS-----CCEEEECCC
T ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC-----cEEEEECCC
Confidence 3556667788888887653 578889887764332111111111112222677777887663 456677654
Q ss_pred CcEEECCCCCCCC--ccc-----EEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccc-eEEEEE
Q 005735 471 DEWTSRPSLNGTK--GSL-----AGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFA-LAAAEL 538 (680)
Q Consensus 471 ~~W~~l~~lp~~r--~~~-----a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~-~s~~~~ 538 (680)
..-.. ..++..+ ..| ++... ++..++.|+.+ ..+.+||+.+++-...- ..+..... ...+.+
T Consensus 140 ~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 140 QADRD-GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp CSSCC-CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred Ccccc-CCccceeeccCCCcceEEEEEecCCCCEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 32110 0111110 111 11111 23345555544 34678898887644321 12222111 112222
Q ss_pred ---CCEEEEEcCCCCCCcCceeEEEeCCCC--cEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 539 ---NGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 539 ---~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++.+++.|+.++ .+.+||.... ....+.. ......+++.. ++..++.|+.++ .+.+||+.+.
T Consensus 214 ~~~~~~~l~sgs~D~-----~v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~ 281 (380)
T 3iz6_a 214 NSLNANMFISGSCDT-----TVRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTG 281 (380)
T ss_dssp CSSSCCEEEEEETTS-----CEEEEETTTTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTT
T ss_pred ecCCCCEEEEEECCC-----eEEEEECCCCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCC
Confidence 667888888775 6788887632 1222211 11112223322 567777777653 4789999876
Q ss_pred cEEEc-CCCCC----Ccc-ceEEEE-ECCEEEEEecccCCCcccceEEEEcCC
Q 005735 613 SWMSG-EPMKL----SRG-YLGAAV-VKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 613 ~W~~v-~~lp~----~R~-~~s~v~-~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.-... ...+. ... ..+++. .++++++.|+.++ .+.+|+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg------~i~vwd~~ 328 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG------DCYVWDTL 328 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS------CEEEEETT
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCC------CEEEEECC
Confidence 54332 11111 011 122222 2677777776543 36777754
No 145
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.27 E-value=2.9 Score=42.28 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=118.1
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.....+.+++.||+.-.. ...+++||+....-.... . +...++++.. +++|||....... ..+++||+
T Consensus 34 pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~~~~~~~-~--~~~p~gia~~~dG~l~vad~~~~~---~~v~~~d~ 102 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHE-----VGEIVSITPDGNQQIHAT-V--EGKVSGLAFTSNGDLVATGWNADS---IPVVSLVK 102 (306)
T ss_dssp EEEEEECTTSCEEEEETT-----TTEEEEECTTCCEEEEEE-C--SSEEEEEEECTTSCEEEEEECTTS---CEEEEEEC
T ss_pred cceEEECCCCCEEEEeCC-----CCeEEEECCCCceEEEEe-C--CCCceeEEEcCCCcEEEEeccCCc---ceEEEEcC
Confidence 345667677888887532 245899998875322221 1 1233444443 5779887643211 24788998
Q ss_pred CCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCcc---EEEccc----cc-cc-ccceEEEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGK---WIRTRS----ML-QK-RFALAAAEL 538 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~---W~~i~~----~p-~~-r~~~s~~~~ 538 (680)
.+.+.+.+..++..+.....+.. ++.+|+... ....++++|+.+++ |...+. .+ .. .....+..-
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 88887766555444433333333 556777632 12478899987642 221111 11 11 112223333
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCC-Cc---EEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPRE-HY---WTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t-~~---W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
++.||+.-- ..+.|++||+.. ++ .+.+.....+ ..+++- ++.||+.... .+.|.+||+. .+
T Consensus 178 g~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~~~P---~gi~vd~dG~l~va~~~-----~~~V~~~~~~-G~ 243 (306)
T 2p4o_A 178 GNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHI-----YNSVVRIAPD-RS 243 (306)
T ss_dssp TTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBT-----TCCEEEECTT-CC
T ss_pred CCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEeccCCC---CCeEECCCCCEEEEeCC-----CCeEEEECCC-CC
Confidence 568888742 235789999864 22 1222222112 223333 6778887542 3568999986 44
Q ss_pred EEEcCCCCCCccceEEEEEC------CEEEEEec
Q 005735 614 WMSGEPMKLSRGYLGAAVVK------EAIYVIGG 641 (680)
Q Consensus 614 W~~v~~lp~~R~~~s~v~~~------~~lyV~GG 641 (680)
...+...+.+-.....+.++ +.|||...
T Consensus 244 ~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 244 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 44433333332223333442 68998865
No 146
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=1.6 Score=46.74 Aligned_cols=204 Identities=9% Similarity=-0.027 Sum_probs=104.6
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEE--cCCCCCCcc-ceEEEE-EC---CEEEEEecCCCCCccceE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKT--LKPMSSARS-YASAAM-LN---GELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~--l~~mp~~R~-~~s~v~-~~---~~IyV~GG~~~~~~~~~v 463 (680)
.+..+.+++..+++|+.+ ..++.++..+..... +..+..... -.+++. -+ +.+++.|+.+ ..+
T Consensus 153 ~~~~~sp~~~~l~~~~~~-----g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i 222 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKF-----GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHI 222 (450)
T ss_dssp EEEEECTTSSEEEEEETT-----SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCE
T ss_pred eEEEEcCCCCEEEEEeCC-----CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcE
Confidence 355566677777777653 357888876654321 111111111 122222 26 7788888765 358
Q ss_pred EEEeCCCCcEEE--CCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEccccc--------------
Q 005735 464 ESYSPANDEWTS--RPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML-------------- 527 (680)
Q Consensus 464 ~vyD~~t~~W~~--l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p-------------- 527 (680)
.+||..+.+... +..- .......+.. ++++++.|+.+ ..+.+||+.+++....-...
T Consensus 223 ~vwd~~~~~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (450)
T 2vdu_B 223 KISHYPQCFIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP 295 (450)
T ss_dssp EEEEESCTTCEEEECCCC-SSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred EEEECCCCceeeeeecCC-CCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence 888887664321 1111 1111112222 67777777744 36788999887643221110
Q ss_pred ----------ccccceEEEEE-CCEEEEEcC-CCCCCcCceeEEEeC--C-CCcEEEeccCCCCCceeEEEEECCEEEEE
Q 005735 528 ----------QKRFALAAAEL-NGVLYATGG-YDGNEYMNSAERFDP--R-EHYWTKIANMNRRRGCHSLAVLNGKLYAL 592 (680)
Q Consensus 528 ----------~~r~~~s~~~~-~g~Lyv~GG-~~~~~~~~~v~~yD~--~-t~~W~~v~~~p~~r~~~s~v~~~~~Iyvi 592 (680)
.......++.. +++.+++++ .+ ..+.+||. . ...+..+..+........++...+.+++.
T Consensus 296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVT 370 (450)
T ss_dssp ---------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEE
T ss_pred ccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEE
Confidence 00111112222 344444443 33 36788887 3 34566665444433344555566777776
Q ss_pred eccCCC----CCCCeEEEEeCCCCcEEE
Q 005735 593 GGFDGS----AMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 593 GG~~~~----~~~~~v~~yD~~t~~W~~ 616 (680)
.+.... ...-.++.++..++.|..
T Consensus 371 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 371 LDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp ECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred EecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 654321 112267777888888864
No 147
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.23 E-value=0.99 Score=50.86 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=127.1
Q ss_pred CCCEE-EEEecCCCCcccCeEEEEeCC--C-CeEEEcCCCCC---CccceEEEEE-CCEEEEEecCCC-----CCccceE
Q 005735 397 PSESI-YLVGGCDGDSWLSTLELYLPS--C-DVIKTLKPMSS---ARSYASAAML-NGELYIFGGGDG-----NSWHNTV 463 (680)
Q Consensus 397 ~~~~I-yv~GG~~~~~~~~~v~~yd~~--t-~~W~~l~~mp~---~R~~~s~v~~-~~~IyV~GG~~~-----~~~~~~v 463 (680)
+++.. +++.... ...+|.++.. . +....+...+. .......+.. +++.+++..... .....++
T Consensus 88 PDg~~~la~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 88 PAGGPLLVFTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp SSSSCEEEEEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred cCCCeEEEEEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 44444 4455432 3468999887 4 66666665432 1112222222 554444443221 1223579
Q ss_pred EEEeCCC------CcEEECC-CCCCCCcccEEEEECCEEEEEccCCCCc---ccceEEEEeCC-CccEEEccccccc-cc
Q 005735 464 ESYSPAN------DEWTSRP-SLNGTKGSLAGATIDNKIFAIGGGNGLE---CFSDVEMLDLD-IGKWIRTRSMLQK-RF 531 (680)
Q Consensus 464 ~vyD~~t------~~W~~l~-~lp~~r~~~a~~v~~gkIyV~GG~~~~~---~~~~ve~yD~~-t~~W~~i~~~p~~-r~ 531 (680)
+++|..+ .+.+.+. .-. .........-+|+.+++...+... ....++++|+. ++++.....+... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 164 AAVPLDGSAAADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEEETTSTTTTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEEECCCCccccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 9999988 6666654 211 111111222366654444432211 13579999999 5733322222111 11
Q ss_pred ceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCC----c---eeEEEEE-CCEEEEEeccCCCCCC
Q 005735 532 ALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR----G---CHSLAVL-NGKLYALGGFDGSAMV 601 (680)
Q Consensus 532 ~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r----~---~~s~v~~-~~~IyviGG~~~~~~~ 601 (680)
......+ +|++|+.+..++ ...++++|+.+++++.+....... + ...++.. ++++++.+.. + .
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~---~ 315 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G---A 315 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S---S
T ss_pred eEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C---c
Confidence 1122222 677887765543 237999999888998875432111 1 1123333 6777776654 2 4
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCccceEE-EEECCEEEEEecccCCCcccceEEEEcCC-CCeEe
Q 005735 602 PSIEVYDPRLGSWMSGEPMKLSRGYLGA-AVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEE 663 (680)
Q Consensus 602 ~~v~~yD~~t~~W~~v~~lp~~R~~~s~-v~~~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~ 663 (680)
..++.+|+.++....+..- ......+ ..-++.+++..+... ....++.++.. ...+.
T Consensus 316 ~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~---~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 316 AVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPR---TAYEVVELDTVTGRART 374 (662)
T ss_dssp CEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETT---EEEEEEEEETTTCCEEE
T ss_pred cEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCC---CCCEEEEEECCCCceEE
Confidence 5788889988887776432 1112223 334666666654322 22456666654 44443
No 148
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.64 Score=48.45 Aligned_cols=235 Identities=16% Similarity=0.162 Sum_probs=116.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCC----C-eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSC----D-VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t----~-~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v 463 (680)
.+..+.+++.+++.|+.++ .+.+||..+ . ....+... ...-.+++.. ++.+++.|+.++ .+
T Consensus 71 ~~~~~s~~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg-----~v 138 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNG-----SLELYSTNEANNAINSMARFSNH--SSSVKTVKFNAKQDNVLASGGNNG-----EI 138 (416)
T ss_dssp EEEEECSSSSCEEEEESSS-----CEEEECCSSTTSCCCEEEECCCS--SSCCCEEEECSSSTTBEEEECSSS-----CE
T ss_pred EEEEECCCCCeEEEEccCC-----eEEEeecccccccccchhhccCC--ccceEEEEEcCCCCCEEEEEcCCC-----eE
Confidence 3555666777888887643 577888876 1 23333221 1112223332 267777777653 57
Q ss_pred EEEeCCCCc------EE-ECCCCCCCCcc-cEEEEE-C-CEEEEEccCCCCcccceEEEEeCCCccEEEccccccc----
Q 005735 464 ESYSPANDE------WT-SRPSLNGTKGS-LAGATI-D-NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK---- 529 (680)
Q Consensus 464 ~vyD~~t~~------W~-~l~~lp~~r~~-~a~~v~-~-gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~---- 529 (680)
.+||..+.+ -. .+......... .+++.. + +.+++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEecccccccc
Confidence 888887764 11 11111111111 222332 3 5677777654 3478999988765433222210
Q ss_pred ccceEEEEE--C-CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC--CCCceeEEEEE--CCEEEEEeccCCCCCCC
Q 005735 530 RFALAAAEL--N-GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN--RRRGCHSLAVL--NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 530 r~~~s~~~~--~-g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p--~~r~~~s~v~~--~~~IyviGG~~~~~~~~ 602 (680)
......+.+ + ..+++.|+.++. ...+.+||..+..- .+..+. ......+++.. ++.+++.|+.+ .
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----g 285 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-----N 285 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-----S
T ss_pred CCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-----C
Confidence 122222233 2 357777765531 12577888876431 111121 22222233332 56777777764 3
Q ss_pred eEEEEeCCCCcEEE-cCCCCCCccceEEEEE-CC-EEEEEecccCCCcccceEEEEcCC
Q 005735 603 SIEVYDPRLGSWMS-GEPMKLSRGYLGAAVV-KE-AIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 603 ~v~~yD~~t~~W~~-v~~lp~~R~~~s~v~~-~~-~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.+.+||+.+..-.. +.... ....+++.. ++ .+++.|+.++ .+.+|+..
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~------~i~iw~~~ 336 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARG--NWCFKTKFAPEAPDLFACASFDN------KIEVQTLQ 336 (416)
T ss_dssp EEEEECSSSCCEEEEEECSS--SCCCCEEECTTCTTEEEECCSSS------EEEEEESC
T ss_pred CEEEeeCCCCccceeecCCC--CceEEEEECCCCCCEEEEEecCC------cEEEEEcc
Confidence 58899987764322 21111 111122222 33 6777776653 35566543
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.06 E-value=0.51 Score=47.41 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=112.3
Q ss_pred cceEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC----CccceEEEEE--CCEEEEEecCC---CCC-
Q 005735 390 SDELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS----ARSYASAAML--NGELYIFGGGD---GNS- 458 (680)
Q Consensus 390 ~~~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~----~R~~~s~v~~--~~~IyV~GG~~---~~~- 458 (680)
.....+.+++ .+|+.++.+ ..++++|+.+++....-..+. ....+.++.. +..||+..... ...
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred ccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 3456666666 677766532 468999998876543211111 0012233333 34777764211 011
Q ss_pred --ccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccc-cccce
Q 005735 459 --WHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ-KRFAL 533 (680)
Q Consensus 459 --~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~-~r~~~ 533 (680)
....+.+||..+.+....-... ..-...+.. +++ ||+.+ ..+.+||+.+++-...-+... .+. .
T Consensus 111 ~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~~-~ 179 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG--------RDLHVMDPEAGTLVEDKPIQSWEAE-T 179 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES--------SSEEEEETTTTEEEEEECSTTTTTT-T
T ss_pred cccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC--------CeEEEEECCCCcEeeeeeccccCCC-c
Confidence 1367999999887654322211 112222332 454 66662 358899998876433211111 010 0
Q ss_pred EEEEECCEEEEEcCCCCC------------------CcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CC-EEEEEe
Q 005735 534 AAAELNGVLYATGGYDGN------------------EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALG 593 (680)
Q Consensus 534 s~~~~~g~Lyv~GG~~~~------------------~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~-~IyviG 593 (680)
....-+..+|+.+...+. .....+++||+.+++-..+...+.......++.. ++ .+|+..
T Consensus 180 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 259 (337)
T 1pby_B 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259 (337)
T ss_dssp BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC
Confidence 000111223322211100 0111578999988876533322222222233333 33 455541
Q ss_pred ccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CCE-EEEEecccCCCcccceEEEEcCC
Q 005735 594 GFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEA-IYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 594 G~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~~-lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
..+.+||+.+.+-... ++.+....+++.. +++ ||+ ++.+ ..+.+|+..
T Consensus 260 --------~~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~-~~~~------~~i~v~d~~ 309 (337)
T 1pby_B 260 --------NVLESFDLEKNASIKR--VPLPHSYYSVNVSTDGSTVWL-GGAL------GDLAAYDAE 309 (337)
T ss_dssp --------SEEEEEETTTTEEEEE--EECSSCCCEEEECTTSCEEEE-ESBS------SEEEEEETT
T ss_pred --------CeEEEEECCCCcCcce--ecCCCceeeEEECCCCCEEEE-EcCC------CcEEEEECc
Confidence 5689999987654332 1122223344443 444 555 4332 358888875
No 150
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.06 E-value=2.5 Score=48.47 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=115.3
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCC--------Cccc
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGN--------SWHN 461 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~--------~~~~ 461 (680)
.....+.++++.++++-..+......++++|..+++..... .+..+....+-. +++-++++..... ....
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 34456777888777765433333467999999999875541 111111122222 5543333333211 3345
Q ss_pred eEEEEeCCCCcE--EECCCCCC--CCcccEE-EEECCEEEEEccCCCCcccceEEEEeCCCc--cEEEcccccccccceE
Q 005735 462 TVESYSPANDEW--TSRPSLNG--TKGSLAG-ATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KWIRTRSMLQKRFALA 534 (680)
Q Consensus 462 ~v~vyD~~t~~W--~~l~~lp~--~r~~~a~-~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~--~W~~i~~~p~~r~~~s 534 (680)
.+++++..+..= ..+...+. +....+. ..-+++.+++....+ ...+.++.+|+.+. .|..+..-.......
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~- 286 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGDLDADVSL- 286 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence 688888766531 11111111 1212222 222566443322111 12368899998776 677664322222221
Q ss_pred EEEECCEEEEEcCCCCCCcCceeEEEeCCCC---cEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 535 AAELNGVLYATGGYDGNEYMNSAERFDPREH---YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 535 ~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~---~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
....++.||+....+. ....++.+|+.+. .|+.+-+-.... . .....++.|++..-.++ ...++++|+..
T Consensus 287 ~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g 359 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEG 359 (693)
T ss_dssp EEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETT---EEEEEEECTTS
T ss_pred EeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECC---eeEEEEEECCC
Confidence 3345789999876432 2347899998763 488764433222 2 44455777766544332 34689999886
Q ss_pred CcEEEc
Q 005735 612 GSWMSG 617 (680)
Q Consensus 612 ~~W~~v 617 (680)
+....+
T Consensus 360 ~~~~~l 365 (693)
T 3iuj_A 360 KRVREV 365 (693)
T ss_dssp CEEEEE
T ss_pred CeeEEe
Confidence 655554
No 151
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.87 Score=48.13 Aligned_cols=146 Identities=10% Similarity=0.083 Sum_probs=78.2
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
++.+++.|+.+ ..+.+||+.+.+-...-..+.......++.+ ++.+++.|+.++ .+.+||..+.....
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCccEEE
Confidence 46777777654 3578899988764322111101112222333 677778887664 68899998866543
Q ss_pred eccCCCCCceeEEEEE-----CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc-C-C---C------C------------
Q 005735 570 IANMNRRRGCHSLAVL-----NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG-E-P---M------K------------ 621 (680)
Q Consensus 570 v~~~p~~r~~~s~v~~-----~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v-~-~---l------p------------ 621 (680)
.-..+......+++.. ++.+++.|+.+ ..+.+||..+..-... . . . |
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 3222222222222111 34566666644 3588999887653221 1 0 0 0
Q ss_pred --CCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 622 --LSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 622 --~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
......+++..++.+++.||.++ .+.+|+..
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d~------~i~~wd~~ 358 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEATS------SIVMFSLN 358 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGGT------EEEEEETT
T ss_pred cccCCceEEEEECCceEEEecCCCC------eEEEEECC
Confidence 11112334444788888888765 46777754
No 152
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.04 E-value=3.3 Score=41.59 Aligned_cols=207 Identities=9% Similarity=0.023 Sum_probs=108.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEE-ECCEEEEEecCCCCCccceEEEEeCCCC--c
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAM-LNGELYIFGGGDGNSWHNTVESYSPAND--E 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~-~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~ 472 (680)
.+.+++.|..+ ..+.++|+.+++ |+.-.. .....+.+.+ -++.||+.+. ..+..||+ ++ .
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILFSYS-------KGAKMITR-DGREL 68 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEEECB-------SEEEEECT-TSCEE
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEEeCC-------CCEEEECC-CCCEE
Confidence 45677777643 568899997775 554322 1112333333 3788888332 45899998 44 4
Q ss_pred EEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCc-cEEEc-c-ccccc--ccceEEEEECCEEEEEc
Q 005735 473 WTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIG-KWIRT-R-SMLQK--RFALAAAELNGVLYATG 546 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i-~-~~p~~--r~~~s~~~~~g~Lyv~G 546 (680)
|+.-.+ .....+++... +|++++..+.+ ...+..+|+... .|+.. . ..+.. .........+|.+++..
T Consensus 69 W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 69 WNIAAP--AGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp EEEECC--TTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred EEEcCC--CCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 654331 11122233333 67777764421 235778887543 24432 1 11111 11112233366666654
Q ss_pred CCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc--EEEcC-CC
Q 005735 547 GYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS--WMSGE-PM 620 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~--W~~v~-~l 620 (680)
..+ ..+.+||+. ++ |+.-.. ...+++... ++.+++.+..+ ..+..||+++.+ |+.-. .+
T Consensus 143 ~~~-----~~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 143 FAT-----SEVREIAPN-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp TTT-----TEEEEECTT-SCEEEEEECS----SCCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEEGGGS
T ss_pred cCC-----CEEEEECCC-CCEEEEEECC----CCccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEecCCCC
Confidence 322 368899987 43 554332 122334444 67777776542 468999998654 55432 22
Q ss_pred CCCcc--ceEEEEE-CCEEEEEe
Q 005735 621 KLSRG--YLGAAVV-KEAIYVIG 640 (680)
Q Consensus 621 p~~R~--~~s~v~~-~~~lyV~G 640 (680)
+..+. ..+++.. ++.+||..
T Consensus 208 ~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp BSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCccccccccceEcCCCCEEEEe
Confidence 22122 2233333 78888887
No 153
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.03 E-value=1.6 Score=50.75 Aligned_cols=215 Identities=11% Similarity=0.061 Sum_probs=117.0
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCC-C-CCccceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPM-S-SARSYASAAML-NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~m-p-~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
+.....++.|++..-. .-+++||+.++.+...... . ....-.+++.. ++.|++ |... .-+++||+
T Consensus 367 ~i~~d~~g~lWigt~~------~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~-----~Gl~~~~~ 434 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDG------GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYL-----GNISYYNT 434 (781)
T ss_dssp EEEECTTSCEEEEEBS------SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETT-----EEEEEECS
T ss_pred EEEEcCCCCEEEEeCC------CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eecc-----CCEEEEcC
Confidence 3444446777764311 1288999988877665311 1 11222333333 577877 3321 34889999
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccc----cccceEEEEE-CCE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ----KRFALAAAEL-NGV 541 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~----~r~~~s~~~~-~g~ 541 (680)
.+++++.......+.....+... ++.||+... ..+.+||+.+++|........ .....+++.- +|.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred CCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 99999887532111111112222 567887421 458899999998876543221 1111222222 577
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEecc---CCCCCceeEEEE-ECCEEEEEeccCCCCCCCeE-EEEeCCCCcEEE
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSI-EVYDPRLGSWMS 616 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~---~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v-~~yD~~t~~W~~ 616 (680)
||+-... ..+++||+.+++++.... ++.. ...+++. .++.|++... ..+ ..||+.++++..
T Consensus 508 lWigt~~------~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 508 FWIGTFG------GGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQV 573 (781)
T ss_dssp EEEEESS------SCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCEEEEET-------TEEEEESCTTTCCCEE
T ss_pred EEEEEcC------CCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCEEEEEC-------CCceEEECCCCCcEEE
Confidence 8874321 247899999999888753 2211 1122222 2567777532 236 889999888776
Q ss_pred cC---CCCCCccceEEEEE-CCEEEEEe
Q 005735 617 GE---PMKLSRGYLGAAVV-KEAIYVIG 640 (680)
Q Consensus 617 v~---~lp~~R~~~s~v~~-~~~lyV~G 640 (680)
.. .++.... .+++.- ++.|++.+
T Consensus 574 ~~~~~gl~~~~i-~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 574 FQRKEGLPNTHI-RAISEDKNGNIWAST 600 (781)
T ss_dssp ECGGGTCSCCCC-CEEEECSSSCEEEEC
T ss_pred ccccCCCCCceE-EEEEECCCCCEEEEc
Confidence 53 3443322 333333 56777764
No 154
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.02 E-value=2.4 Score=42.56 Aligned_cols=193 Identities=13% Similarity=0.091 Sum_probs=94.9
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCcc-ceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARS-YASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~-~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++.+++.|+.+ ..+.+||..++.-... +..... -.+++.. ++.+++.|+.++ .+.++|..
T Consensus 60 ~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~ 127 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWE 127 (304)
T ss_dssp EEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGG
T ss_pred EEEEeCCCCEEEEECCC-----CEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECC
Confidence 34445566677777754 3578888887653221 111111 1222222 566677777653 57788876
Q ss_pred CCcEEECCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE----CCEE
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL----NGVL 542 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~----~g~L 542 (680)
++.= ....+......-.++.+ ++.+++.|+.++ .+.+||+.+..-...-.....+ ....+.+ ++.+
T Consensus 128 ~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-----~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 128 NNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTTGQER-GVNYVDYYPLPDKPY 200 (304)
T ss_dssp GTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTS-----EEEEEETTCSSCSEEEECCCTT-CEEEEEECCSTTCCE
T ss_pred CCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCccceeccCCcC-cEEEEEEEEcCCCCE
Confidence 5421 11111111111122222 346777777553 4678887654311000000111 1111222 4556
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCC-CceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRR-RGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~-r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
++.|+.++ .+.+||..+..-... +... .....++.. ++.+++.|+.++ .+.+||..+.+-.
T Consensus 201 l~s~s~D~-----~i~iWd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~Dg-----~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 201 MITASDDL-----TIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPTLPIIISGSEDG-----TLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEETTS-----EEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred EEEEcCCC-----eEEEEeCCCCcccee--eCCCCCCEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcee
Confidence 67776654 688899887653222 2111 111222222 556777777653 4788998775543
No 155
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.00 E-value=1.3 Score=44.91 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=108.1
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEE---ECCEEEEEecCCCCCccceEEEEeC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAM---LNGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~---~~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
+..+.+++..++.|+.+ ..+.+||..++....+... ...-.+++. -++.+++.|+.+ ..+.+||.
T Consensus 91 ~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~ 158 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDT 158 (368)
T ss_dssp EEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--SSCEEEEEEEECSSCEEEEEEETT-----SEEEEECS
T ss_pred EEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceeeccc--cCceEEEEEEeCCCCCEEEEccCC-----CcEEEEEC
Confidence 44555577777777764 3688899988876554221 112223332 256777888765 35888988
Q ss_pred CCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccccceEEEEEC----CEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALAAAELN----GVL 542 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r~~~s~~~~~----g~L 542 (680)
.+.+-.. .+.......+.......+++.++ ...+.+||..... +..+...............+ ...
T Consensus 159 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 159 RSSNPMM--VLQLPERCYCADVIYPMAVVATA------ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp SCSSCSE--EEECSSCEEEEEEETTEEEEEEG------GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred CCCcEEE--EEecCCCceEEEecCCeeEEEeC------CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence 7754211 11112222333344555544432 2356778877653 33332211111111111222 123
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcE----EEec---cCC--CCC-----ceeEEEEE-CCEEEEEeccCCCCCCCeEEEE
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYW----TKIA---NMN--RRR-----GCHSLAVL-NGKLYALGGFDGSAMVPSIEVY 607 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W----~~v~---~~p--~~r-----~~~s~v~~-~~~IyviGG~~~~~~~~~v~~y 607 (680)
++.|+.++ .+.+||.....- ..+. ... ... ...+++.. ++.+++.|+.++ .+.+|
T Consensus 231 ~~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iw 300 (368)
T 3mmy_A 231 FALGSIEG-----RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-----RFSFW 300 (368)
T ss_dssp EEEEETTS-----EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-----CEEEE
T ss_pred EEEecCCC-----cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC-----eEEEE
Confidence 66666553 577787766421 1111 000 000 11222222 566777777653 48899
Q ss_pred eCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEeccc
Q 005735 608 DPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVK 643 (680)
Q Consensus 608 D~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~ 643 (680)
|..+..-.. .+.........+.+ +++.++.||.+
T Consensus 301 d~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 301 DKDARTKLK--TSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ETTTTEEEE--ECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred ECCCCcEEE--EecCCCCCceEEEECCCCCeEEEEecc
Confidence 998764432 22222222233333 66777777654
No 156
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.99 E-value=0.3 Score=49.60 Aligned_cols=184 Identities=13% Similarity=0.203 Sum_probs=90.5
Q ss_pred CEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCCccceEEEE-------ECCEEEEEecCCCCCccceEEEEeCC
Q 005735 399 ESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSARSYASAAM-------LNGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 399 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~R~~~s~v~-------~~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+.+++.|+.+ ..+.+||..+.. ...+.... ..-.++.. -++..++.|+.++ .+.+||..
T Consensus 80 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~ 147 (357)
T 3i2n_A 80 QRYLATGDFG-----GNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPR 147 (357)
T ss_dssp TCCEEEEETT-----SCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTT
T ss_pred CceEEEecCC-----CeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCC
Confidence 4777777754 347788887654 12221111 11111211 2456677777653 57888888
Q ss_pred CCc--EEECCCCCC--CCcccEEEE-----ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--
Q 005735 470 NDE--WTSRPSLNG--TKGSLAGAT-----IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-- 538 (680)
Q Consensus 470 t~~--W~~l~~lp~--~r~~~a~~v-----~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-- 538 (680)
+.. ...+..... .+.-.+.+. -++.+++.|+.+ ..+.+||+.+.+-........ ...+++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~ 220 (357)
T 3i2n_A 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNIKN--GVCSLEFDRK 220 (357)
T ss_dssp SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEECSS--CEEEEEESCS
T ss_pred CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecCCCC--ceEEEEcCCC
Confidence 754 222222111 111112221 366777777644 357889998876433222111 12222222
Q ss_pred --CCEEEEEcCCCCCCcCceeEEEeCCCCc----EEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCC
Q 005735 539 --NGVLYATGGYDGNEYMNSAERFDPREHY----WTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 539 --~g~Lyv~GG~~~~~~~~~v~~yD~~t~~----W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~ 610 (680)
++..+++|+.++ .+.+||..+.. +.............+++.. ++. +++.|+.++ .+.+||..
T Consensus 221 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~ 290 (357)
T 3i2n_A 221 DISMNKLVATSLEG-----KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-----GLHLWKYE 290 (357)
T ss_dssp SSSCCEEEEEESTT-----EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----EEEEEEEE
T ss_pred CCCCCEEEEECCCC-----eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-----cEEEeecC
Confidence 466777776554 57777765432 1111000122223333333 455 677777653 57777765
Q ss_pred C
Q 005735 611 L 611 (680)
Q Consensus 611 t 611 (680)
+
T Consensus 291 ~ 291 (357)
T 3i2n_A 291 Y 291 (357)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.85 E-value=2.7 Score=48.47 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=113.8
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCC---------Ccc
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGN---------SWH 460 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~---------~~~ 460 (680)
....+.++++.++++...+......++++|..+++..... .+.... ..++.. + +-++++..... ...
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~-~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKF-SGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEES-CCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCcee-ccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 3456667777777765433333357999999999875531 111110 111111 4 33333333221 123
Q ss_pred ceEEEEeCCCCcE--EECCCCCC-CCcccEEE-EECCEEEEEccCCCCcccceEEEEeCCCc--c-EEEcccccccccce
Q 005735 461 NTVESYSPANDEW--TSRPSLNG-TKGSLAGA-TIDNKIFAIGGGNGLECFSDVEMLDLDIG--K-WIRTRSMLQKRFAL 533 (680)
Q Consensus 461 ~~v~vyD~~t~~W--~~l~~lp~-~r~~~a~~-v~~gkIyV~GG~~~~~~~~~ve~yD~~t~--~-W~~i~~~p~~r~~~ 533 (680)
..+++++..+..- ..+...+. +....... .-+|+..++.........+.++.+|+.++ . |..+..-.......
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 5688888766541 11211111 11222222 22665444443332223568899999877 6 87775433222222
Q ss_pred EEEEECCEEEEEcCCCCCCcCceeEEEeCCC--CcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 534 AAAELNGVLYATGGYDGNEYMNSAERFDPRE--HYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 534 s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t--~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
....++.||+....+ .....++++|..+ ..|+.+-+-... ....+...++.|++....++ ...++++|+..
T Consensus 323 -~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g 395 (741)
T 1yr2_A 323 -VDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDA---KSQVLAFDLDG 395 (741)
T ss_dssp -EEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETT---EEEEEEEETTS
T ss_pred -EeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECC---EEEEEEEeCCC
Confidence 224577788875432 2234789999887 579887532221 12233445888887765543 34688889765
Q ss_pred CcEEEc
Q 005735 612 GSWMSG 617 (680)
Q Consensus 612 ~~W~~v 617 (680)
+.-..+
T Consensus 396 ~~~~~l 401 (741)
T 1yr2_A 396 KPAGAV 401 (741)
T ss_dssp CEEEEC
T ss_pred Cceeec
Confidence 544444
No 158
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.73 E-value=3.2 Score=41.05 Aligned_cols=234 Identities=12% Similarity=0.029 Sum_probs=108.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+..+.+++..++.|+.++ .+.++|..+++......... .........+.+++.|+..+ .+..++..+
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h~--~~~~~~~~~~~~l~s~~~~~-----~~~~~~~~~ 138 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSG-----HIHHHDVRV 138 (318)
T ss_dssp EEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS--SCEEEEEEETTEEEEEETTS-----EEEEEETTS
T ss_pred EEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEecCcc--ceEEEeecCCCEEEEEecCC-----ceEeeecCC
Confidence 3456666778888887653 57888888876433322111 22223334555666666542 344455444
Q ss_pred CcEEECCCCCCC-CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEE--ccccccccc-ceEEEEE--CC-EEE
Q 005735 471 DEWTSRPSLNGT-KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR--TRSMLQKRF-ALAAAEL--NG-VLY 543 (680)
Q Consensus 471 ~~W~~l~~lp~~-r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~--i~~~p~~r~-~~s~~~~--~g-~Ly 543 (680)
............ .........+++.++.|+.++ .+.+||..+++-.. ......... ..+.+.. +. .++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred CceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-----ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 322111000001 111111222556666666543 46678887654211 111111111 1111111 22 333
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCC
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLS 623 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~ 623 (680)
+.+|.. ...+.++|.....-..................++.+++.+|..+ ..+.+||..+.+-. ..+...
T Consensus 214 ~~~~~~----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~~--~~l~gH 283 (318)
T 4ggc_A 214 TGGGTS----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAKV--AELKGH 283 (318)
T ss_dssp EEECTT----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCEE--EEECCC
T ss_pred EEecCC----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCC----CEEEEEECCCCcEE--EEEcCC
Confidence 433322 23577888877665444332222211111122556666655432 35889998765432 222221
Q ss_pred ccceEEEEE--CCEEEEEecccCCCcccceEEEEcC
Q 005735 624 RGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 624 R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
......+.+ ++++++.||.++ +|.+|+.
T Consensus 284 ~~~V~~l~~spdg~~l~S~s~D~------~v~iWd~ 313 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVASAAADE------TLRLWRC 313 (318)
T ss_dssp SSCEEEEEECTTSSCEEEEETTT------EEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEecCC------eEEEEEC
Confidence 222222333 677888887654 3566653
No 159
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.72 E-value=3.5 Score=42.07 Aligned_cols=186 Identities=10% Similarity=0.077 Sum_probs=92.5
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEE-Ec--CCCCCCccc--eEEEEECCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIK-TL--KPMSSARSY--ASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~-~l--~~mp~~R~~--~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
++.+++.||.++ .+.+||..+++.. .+ ......... ...+..++.|.+.... ..+.+||..+.+
T Consensus 47 d~~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~------~~~~~~~~~~~~ 115 (343)
T 3lrv_A 47 DKWVCMCRCEDG-----ALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG------NQITILDSKTNK 115 (343)
T ss_dssp EEEEEEEEEETT-----EEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETT------TEEEEEETTTCC
T ss_pred CCCEEEEECCCC-----cEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEcc------CceEEeecCCcc
Confidence 667888888654 5777777665421 11 111110000 1222224555554332 245667776665
Q ss_pred -EEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEc
Q 005735 473 -WTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATG 546 (680)
Q Consensus 473 -W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~G 546 (680)
..... .... ....++.+ ++.+++.|+.++ .+.+||+.+++-..+..........+++.. ++.+++.|
T Consensus 116 ~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 116 VLREIE-VDSA-NEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp EEEEEE-CCCS-SCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred eeEEee-cCCC-CCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 22221 1111 11111111 456777777553 477899988775433222211112222222 67788888
Q ss_pred CCCCCCcCceeEEEeCCCCcEE--EeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 547 GYDGNEYMNSAERFDPREHYWT--KIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~--~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+.++ .+.+||..+..-. .+.. .......+++.. ++..++.|+ ++ .+.+||+++..
T Consensus 189 ~~dg-----~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 189 SPDG-----ILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDV 246 (343)
T ss_dssp CTTS-----CEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred cCCC-----EEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence 7664 6889999877543 2221 112222233322 566666666 32 58999987753
No 160
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=94.69 E-value=2.4 Score=48.37 Aligned_cols=251 Identities=13% Similarity=0.039 Sum_probs=127.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC---Cc-cceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS---AR-SYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~---~R-~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
++.+|.+--. +......+|+.+...+.|+.+..... .. .......+ +++.+++.......-...++++|..++
T Consensus 79 G~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 79 NGRFFYVRTH-KDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp TTEEEEEEEC-TTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred CCEEEEEEEc-CCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 5555554332 22234668888877777877743221 11 11122222 666666554332222357999999998
Q ss_pred cEEECCCCCCCCcccEEEEECCEEEEEccCCCC--------cccceEEEEeCCCccE--EEccccccc-ccceEEEE-EC
Q 005735 472 EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGL--------ECFSDVEMLDLDIGKW--IRTRSMLQK-RFALAAAE-LN 539 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~--------~~~~~ve~yD~~t~~W--~~i~~~p~~-r~~~s~~~-~~ 539 (680)
+......++.......+-.-+|+.++++..+.. .....++.+++.++.- ..+...+.. ........ -+
T Consensus 158 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD 237 (695)
T 2bkl_A 158 EWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD 237 (695)
T ss_dssp CBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT
T ss_pred CCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC
Confidence 764111222222122222226776666554332 2356688999887752 222222221 12222222 25
Q ss_pred CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc---EEE
Q 005735 540 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS---WMS 616 (680)
Q Consensus 540 g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~---W~~ 616 (680)
|+..+++...+. ....++++|..+..|+.+..-.... ...+..++.+|+....+ .....++.+|+.+.. |..
T Consensus 238 G~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 238 GKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp SCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEE
T ss_pred CCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeE
Confidence 554444433221 3457888888777888876432222 22233566655554322 224578999987654 877
Q ss_pred cCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 617 GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 617 v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
+-+-........++..++++++.+..+. ...+++++..
T Consensus 313 l~~~~~~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~ 350 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIVGGHLSLEYLKDA----TSEVRVATLK 350 (695)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEEEETT----EEEEEEEETT
T ss_pred EecCCCCCeEEEEEEECCEEEEEEEECC----EEEEEEEeCC
Confidence 6432212222333444888877765433 2456666643
No 161
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.67 E-value=3.9 Score=42.06 Aligned_cols=216 Identities=11% Similarity=0.122 Sum_probs=110.2
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC-CCccceEEEE-ECCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS-SARSYASAAM-LNGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp-~~R~~~s~v~-~~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.+.+. ++.+|++|.. ..+++-.-.-.+|+.+.... .+-..+.++. -++.+|+.|... .+++-.-.
T Consensus 84 ~i~~~-~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g------~v~~S~Dg 150 (327)
T 2xbg_A 84 SVSFQ-GNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVG------AIYRTKDS 150 (327)
T ss_dssp EEEEE-TTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTC------CEEEESST
T ss_pred EEEec-CCeEEEEECC------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCc------cEEEEcCC
Confidence 34444 4778887632 13444333356899986432 2222334443 368888877522 35554445
Q ss_pred CCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEE-eCCCccEEEcccccccccceEEEE-ECCEEEEEc
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEML-DLDIGKWIRTRSMLQKRFALAAAE-LNGVLYATG 546 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~y-D~~t~~W~~i~~~p~~r~~~s~~~-~~g~Lyv~G 546 (680)
-.+|+.+.... +...++++.. ++.+|++|. .+ .++.- |....+|+.+... .......++. -++.+|+++
T Consensus 151 G~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~G-----~~~~S~d~gG~tW~~~~~~-~~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 151 GKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS-RG-----SFYSTWEPGQTAWEPHNRT-TSRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp TSSEEEEECSC-CCCEEEEEECTTSCEEEEET-TS-----SEEEEECTTCSSCEEEECC-SSSCEEEEEECTTSCEEEEE
T ss_pred CCCCEEeecCC-CcceEEEEEcCCCcEEEEEC-CC-----cEEEEeCCCCCceeECCCC-CCCccceeEECCCCCEEEEe
Confidence 67898875422 2222333333 566776652 21 22222 2225789887532 2233333333 267888776
Q ss_pred CCCCCCcCceeEEEeCC-CCcEEEecc--CCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC-CC
Q 005735 547 GYDGNEYMNSAERFDPR-EHYWTKIAN--MNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP-MK 621 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~-t~~W~~v~~--~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~-lp 621 (680)
.. + .+++.+.. -.+|+.+.. ++.....+.++.. ++.+|++|+. ..++.-.-.-.+|..+.. .+
T Consensus 223 ~~-G-----~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~ 290 (327)
T 2xbg_A 223 NG-G-----KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA------GALLCSQDGGQTWQQDVDVKK 290 (327)
T ss_dssp TT-T-----EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST------TCEEEESSTTSSCEECGGGTT
T ss_pred CC-c-----eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC------CeEEEeCCCCcccEEcCccCC
Confidence 42 1 34444323 457988753 2332233344333 5678888762 224333333578998863 23
Q ss_pred CCccceEEEEE-CCEEEEEe
Q 005735 622 LSRGYLGAAVV-KEAIYVIG 640 (680)
Q Consensus 622 ~~R~~~s~v~~-~~~lyV~G 640 (680)
.+...+.++.. ++.+++.|
T Consensus 291 ~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 291 VPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp SSSCCCEEEEEETTEEEEEC
T ss_pred CCCCeEEEEEECCCceEEEc
Confidence 33334455444 56666665
No 162
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.67 E-value=4.7 Score=41.59 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCCCCcCce-eEEEeCCCCcEEEeccCC-CCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 539 NGVLYATGGYDGNEYMNS-AERFDPREHYWTKIANMN-RRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~-v~~yD~~t~~W~~v~~~p-~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++++++.|+.++ . +.+||..+.+-...-... ......+++.. +++.++.|+.+ ..+.+||+...
T Consensus 206 ~g~~l~s~s~d~-----~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~iw~~~~~ 272 (355)
T 3vu4_A 206 KSDMVATCSQDG-----TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK-----WTLHVFEIFND 272 (355)
T ss_dssp TSSEEEEEETTC-----SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT-----CEEEEEESSCC
T ss_pred CCCEEEEEeCCC-----CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC-----CEEEEEEccCC
Confidence 677778777664 5 788998876543321111 22222333332 67777777754 46788887654
No 163
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.58 E-value=1.1 Score=51.25 Aligned_cols=206 Identities=11% Similarity=-0.043 Sum_probs=104.8
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCC---eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCD---VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~---~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
..+.++++.+++++. ..++++|..++ ....+.... . ....+.+ +++.++++.. ..++++|
T Consensus 114 ~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~--~-~~~~~~~SPDG~~la~~~~------~~i~~~d 178 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGE--G-FATDAKLSPKGGFVSFIRG------RNLWVID 178 (741)
T ss_dssp CEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSS--S-CEEEEEECTTSSEEEEEET------TEEEEEE
T ss_pred eEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCC--c-ccccccCCCCCCEEEEEeC------CcEEEEe
Confidence 345556666666653 67999999887 544443221 1 1222223 5665555542 3799999
Q ss_pred CCCCcEEECCCCCCCC----------------cccEEEEECCEEEEEccCCCC---------------------------
Q 005735 468 PANDEWTSRPSLNGTK----------------GSLAGATIDNKIFAIGGGNGL--------------------------- 504 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r----------------~~~a~~v~~gkIyV~GG~~~~--------------------------- 504 (680)
..+++...+....... .......-+|+.++++..+..
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 9998877664432210 011122225554444332211
Q ss_pred -cccceEEEEeCCC-ccEEEcccc-cc-cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCc--
Q 005735 505 -ECFSDVEMLDLDI-GKWIRTRSM-LQ-KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRG-- 578 (680)
Q Consensus 505 -~~~~~ve~yD~~t-~~W~~i~~~-p~-~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~-- 578 (680)
.....++++|+.+ ++-..+... .. ........ -+|+.++++..+.......++++|+.+++...+.......+
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 0122678889888 765444321 11 11111222 34444444333222234579999999988776643222111
Q ss_pred --eeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC
Q 005735 579 --CHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 579 --~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~ 618 (680)
......-++++++.++.++ ...+|.+|.... +..+.
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESC
T ss_pred cCCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeee
Confidence 1111222667666665433 356888987766 66554
No 164
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.58 E-value=2.3 Score=42.72 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=111.0
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
++.||++.... ..+++||+.++....... + ....+++.. ++.+|+..+ ..+++||+.+++++.+
T Consensus 24 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-~--~~~~~i~~~~dG~l~v~~~-------~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 24 SNSLLFVDIPA-----KKVCRWDSFTKQVQRVTM-D--APVSSVALRQSGGYVATIG-------TKFCALNWKEQSAVVL 88 (297)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEEC-S--SCEEEEEEBTTSSEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEeC-C--CceEEEEECCCCCEEEEEC-------CeEEEEECCCCcEEEE
Confidence 67888876542 468999999886544322 1 112233333 566666532 4689999999988766
Q ss_pred CCCCC--CCcccEEEEE--CCEEEEEccCCCC------cccceEEEEeCCCccEEEc-ccccccccceEEEEE-C-CEEE
Q 005735 477 PSLNG--TKGSLAGATI--DNKIFAIGGGNGL------ECFSDVEMLDLDIGKWIRT-RSMLQKRFALAAAEL-N-GVLY 543 (680)
Q Consensus 477 ~~lp~--~r~~~a~~v~--~gkIyV~GG~~~~------~~~~~ve~yD~~t~~W~~i-~~~p~~r~~~s~~~~-~-g~Ly 543 (680)
..... +........+ +|++|+..-.... .....++.+|+.. +...+ ..+.. ...++.. + ..+|
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~---pngi~~spdg~~ly 164 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI---SNGLDWSLDHKIFY 164 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB---EEEEEECTTSCEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc---ccceEEcCCCCEEE
Confidence 44321 1122222333 6788874321110 1234678888753 33222 11111 1122222 3 3688
Q ss_pred EEcCCCCCCcCceeEEEeC--CCCcEEE---eccCCCC-CceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 544 ATGGYDGNEYMNSAERFDP--REHYWTK---IANMNRR-RGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~--~t~~W~~---v~~~p~~-r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
+.... ...|++||. .++.... +..++.. .....++.- ++.||+.... ...|.+||+++.+...
T Consensus 165 v~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-----~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 165 YIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-----GGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-----TTEEEEECTTTCCEEE
T ss_pred EecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-----CCEEEEEcCCCceEEE
Confidence 77532 246888875 4554421 1222211 122233332 6778877532 2458999998766544
Q ss_pred cCCCCCCccceEEEEEC----CEEEEEeccc
Q 005735 617 GEPMKLSRGYLGAAVVK----EAIYVIGGVK 643 (680)
Q Consensus 617 v~~lp~~R~~~s~v~~~----~~lyV~GG~~ 643 (680)
.-.+|.. ....+.++ +.|||.....
T Consensus 235 ~i~~p~~--~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 235 TVKLPVD--KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEECSSS--BEEEEEEESGGGCEEEEEEBCT
T ss_pred EEECCCC--CceEEEEeCCCCCEEEEEcCCc
Confidence 3333322 22333442 4788887543
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.57 E-value=0.13 Score=63.06 Aligned_cols=227 Identities=10% Similarity=0.087 Sum_probs=113.4
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+..+.+++..++.|+.+ ..+.+||..++....+... .....+++...+..++.|+.+ ..+.+||..+
T Consensus 1007 ~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d-----g~v~vwd~~~ 1074 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSED-----SVIQVWNWQTGDYVFLQAH--QETVKDFRLLQDSRLLSWSFD-----GTVKVWNVIT 1074 (1249)
T ss_dssp CCEEECSSSSCEEEECSS-----SBEEEEETTTTEEECCBCC--SSCEEEEEECSSSEEEEEESS-----SEEEEEETTT
T ss_pred EEEEECCCCCEEEEEcCC-----CEEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEECC-----CcEEEEECCC
Confidence 345666777788888764 3588899998876644321 122223333333344556554 3688899877
Q ss_pred CcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCC
Q 005735 471 DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGY 548 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~ 548 (680)
++-...-..........+..-+++.++.|+.++ .+.+||..+.+ .+..+........++.+ ++++++.|+.
T Consensus 1075 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~ 1147 (1249)
T 3sfz_A 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADK-----TAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDD 1147 (1249)
T ss_dssp TCCCEEEECCSSCCCCEEECSSSSSCEEECCSS-----CCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CceeEEEcccCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeC
Confidence 643211000111111222223666777776543 35578877654 12222211111222223 6778888876
Q ss_pred CCCCcCceeEEEeCCCCcEEEec-cC-------CCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCC
Q 005735 549 DGNEYMNSAERFDPREHYWTKIA-NM-------NRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 549 ~~~~~~~~v~~yD~~t~~W~~v~-~~-------p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~ 619 (680)
++ .+.+||..+++..... +. .......+++.. +++.++.+| ..+.+||+.++... ..
T Consensus 1148 dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-------g~v~vwd~~~g~~~--~~ 1213 (1249)
T 3sfz_A 1148 NG-----EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-------GYLKWWNVATGDSS--QT 1213 (1249)
T ss_dssp TS-----CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-------SSEEEBCSSSCBCC--CC
T ss_pred CC-----EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-------CeEEEEECCCCcee--ee
Confidence 64 4778888765432211 11 111111222222 555555554 35888998775432 22
Q ss_pred CCCCccc-eEEEE-ECCEEEEEecccCCCcccceEEEEc
Q 005735 620 MKLSRGY-LGAAV-VKEAIYVIGGVKNGSEIVDTVERFK 656 (680)
Q Consensus 620 lp~~R~~-~s~v~-~~~~lyV~GG~~~~~~~~~~ve~y~ 656 (680)
+...... .+++. -+++.+++|+.++ .+++|+
T Consensus 1214 ~~~~~~~i~~~~~s~dg~~l~~~~~dg------~v~vw~ 1246 (1249)
T 3sfz_A 1214 FYTNGTNLKKIHVSPDFRTYVTVDNLG------ILYILQ 1246 (1249)
T ss_dssp CCCSSCCCCCCEECSSSCCEEEECTTC------CEEEEC
T ss_pred eeccCCcccEEEECCCCCEEEEecCCc------EEEEEe
Confidence 2211111 12222 2666777776554 366665
No 166
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.56 E-value=4.3 Score=41.02 Aligned_cols=219 Identities=15% Similarity=0.096 Sum_probs=105.4
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++..++.|+.+ ..+.+||..+++-... +.........+.+ ++.+++.|+.++ .+.+||..
T Consensus 70 ~~~~s~dg~~l~s~s~D-----~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd~~ 137 (319)
T 3frx_A 70 DCTLTADGAYALSASWD-----KTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK-----TIKVWTIK 137 (319)
T ss_dssp EEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS-----CEEEEETT
T ss_pred EEEECCCCCEEEEEeCC-----CEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECC
Confidence 35566677788888765 3688899988764321 1111111122222 566777777653 47778876
Q ss_pred CCcEEECCCCCCCCcccEEEEE-------CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CC
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI-------DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NG 540 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~-------~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g 540 (680)
...-..+..-. ..-.+.... ++.+++.|+.++ .+..||+.+.+-... +.........+.+ ++
T Consensus 138 ~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 138 GQCLATLLGHN--DWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEAD--FIGHNSNINTLTASPDG 208 (319)
T ss_dssp SCEEEEECCCS--SCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEE--ECCCCSCEEEEEECTTS
T ss_pred CCeEEEEeccC--CcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhhee--ecCCCCcEEEEEEcCCC
Confidence 54333221110 000111111 233556665443 467888876553221 1111111112222 67
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCc-EEEcC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS-WMSGE 618 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~-W~~v~ 618 (680)
++++.|+.++ .+.+||..+.+-...-... ....+++.. ++.+++.+.. ..+.+|+..... +..+.
T Consensus 209 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 209 TLIASAGKDG-----EIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATA------TGIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp SEEEEEETTC-----EEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEET------TEEEEEEETTEEEEEEEC
T ss_pred CEEEEEeCCC-----eEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcC------CCcEEEEeCcCeeeeccC
Confidence 7778887664 6888998876532221111 122233332 4555544432 346667665432 22222
Q ss_pred C-CCC---C-ccceEEEEE--CCEEEEEecccC
Q 005735 619 P-MKL---S-RGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 619 ~-lp~---~-R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
+ ... . ......+.+ +++.++.|+.++
T Consensus 276 ~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 1 110 0 111112222 677888887664
No 167
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.56 E-value=0.76 Score=51.33 Aligned_cols=240 Identities=11% Similarity=0.024 Sum_probs=114.9
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeC--CCCeEEEcCCCCCCccceEEEEE-----CC-EEEEEecCCCCCccceE
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLP--SCDVIKTLKPMSSARSYASAAML-----NG-ELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~--~t~~W~~l~~mp~~R~~~s~v~~-----~~-~IyV~GG~~~~~~~~~v 463 (680)
...+.++++.+++++.+ ..+.+||. .+.+. +..++.......++.. ++ .+|+.+-. ...+
T Consensus 183 ~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v 250 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW-----PPQF 250 (543)
T ss_dssp EEEECTTSCEEEEEETT-----SEEEEEETTSSSCEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEE
T ss_pred eEEECCCCCEEEEECCC-----CeEEEEECcCCCCcE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeE
Confidence 44466666555555432 56999999 66543 2222223333334433 34 56654422 2467
Q ss_pred EEEeCCCCcEEEC-CC--C--------CCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEccccccccc
Q 005735 464 ESYSPANDEWTSR-PS--L--------NGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRF 531 (680)
Q Consensus 464 ~vyD~~t~~W~~l-~~--l--------p~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~ 531 (680)
.++|..+.+-... +. + +.+|.......- ++.+|+.... ...+.++|..+.+-..+..++..+.
T Consensus 251 ~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~ 325 (543)
T 1nir_A 251 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPF 325 (543)
T ss_dssp EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSS
T ss_pred EEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcC
Confidence 8889887654221 11 1 111222122222 3445554322 3467888887654211112222233
Q ss_pred ceEEEEE-CCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEe---ccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeE
Q 005735 532 ALAAAEL-NGV-LYATGGYDGNEYMNSAERFDPREHYWTKI---ANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSI 604 (680)
Q Consensus 532 ~~s~~~~-~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v---~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v 604 (680)
.+.++.. +++ +|+.+.. .+.+.++|..+++-... ...|.+...... .. ++.+|+.+... -..|
T Consensus 326 ~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~----d~~V 395 (543)
T 1nir_A 326 LHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG----DGSI 395 (543)
T ss_dssp CCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS----SSEE
T ss_pred ccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC----CceE
Confidence 3333332 454 5554322 24788899998875443 233444322222 23 36788776432 2468
Q ss_pred EEEeCCCC-----cEEEcCCCCCCccc-eEEEEE-C-CEEEEEecccCCCcccceEEEEcCC
Q 005735 605 EVYDPRLG-----SWMSGEPMKLSRGY-LGAAVV-K-EAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 605 ~~yD~~t~-----~W~~v~~lp~~R~~-~s~v~~-~-~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.++|..+. .|+.+..++..... ..+... + ..||+-.-.......-.+|.+|+..
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred EEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 88888762 37776655543222 222222 3 3455432111111123567777765
No 168
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.56 E-value=4.7 Score=42.35 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
++.+++.|+.+ ..+.+||..+.+-...-..+.......++.+ +++.++.|+.++ .+.+||+.+++...
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCccEEE
Confidence 47778888765 3688999987654221111101112222333 667777777653 47789998866433
Q ss_pred cccccccccceEEEEE-----CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc-C----------C------------
Q 005735 523 TRSMLQKRFALAAAEL-----NGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN-M----------N------------ 574 (680)
Q Consensus 523 i~~~p~~r~~~s~~~~-----~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~-~----------p------------ 574 (680)
.-..+......+++.. ++.+++.|+.++ .+.+||..+..-...-. . |
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 2111111111111111 355666666553 68889988765333210 0 0
Q ss_pred --CCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 575 --RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 575 --~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
......+++..++.+++.||.++ .|.+||+.+.+
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 361 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELS 361 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGG
T ss_pred cccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcc
Confidence 11112334445788888888653 57888887654
No 169
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.55 E-value=0.26 Score=52.80 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=99.5
Q ss_pred ceEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC-CccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 391 DELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS-ARSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~-~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
.+....+ ++.+++.|+.++ .+.+||..++....+-.... ...-.+++.. ++.+++.|+.++ .+.++
T Consensus 123 ~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iw 192 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQ 192 (435)
T ss_dssp EEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEe
Confidence 3445544 566888888764 47888887665333222221 2222333332 566777777653 57888
Q ss_pred eCCCCcEEECCCCCCCCc-ccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE---CCE
Q 005735 467 SPANDEWTSRPSLNGTKG-SLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL---NGV 541 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~-~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~---~g~ 541 (680)
|..++............. ..+.+. -++++++.|+.++ .+.+||+.... +..+........++.+ +..
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSS
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcce---eEEEecccceEEeeeecCCCce
Confidence 988876654433222211 122222 3677888887553 46788876543 2222111111222333 334
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEe--ccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKI--ANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v--~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
+++.|+.++ .+.+||..+..-... ..........+++.. ++..++.|+.++ .|.+||..+.
T Consensus 265 ~~~s~s~d~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-----~i~iwd~~~~ 328 (435)
T 4e54_B 265 FLATASVDQ-----TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-----EIRVYSASQW 328 (435)
T ss_dssp EEEEEETTS-----BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-----CEEEEESSSS
T ss_pred EEEEecCcc-----eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC-----EEEEEECCCC
Confidence 677777654 467888766432111 011111111122211 566677777653 4788888654
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.50 E-value=0.88 Score=47.07 Aligned_cols=218 Identities=11% Similarity=-0.044 Sum_probs=108.9
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCcE
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW 473 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W 473 (680)
.+.++++.+++....+. ...++.+|+.++....+...+..........-+++.++++..+ ..++++|..+++-
T Consensus 42 ~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLATLEE 114 (388)
T ss_dssp CBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEECCCCcc
Confidence 45566766666654211 2469999999999888865443322112222255444444422 3689999998876
Q ss_pred EECCCCCCCCcccEEEE--ECCEEEEEccCC-----------------CCcccceEEEEeCCCccEEEcccccccccceE
Q 005735 474 TSRPSLNGTKGSLAGAT--IDNKIFAIGGGN-----------------GLECFSDVEMLDLDIGKWIRTRSMLQKRFALA 534 (680)
Q Consensus 474 ~~l~~lp~~r~~~a~~v--~~gkIyV~GG~~-----------------~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s 534 (680)
..+...+.......... -+++.++.--.. .......++.+|+.+++-..+..-+. .....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~ 193 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-WLGHP 193 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-CEEEE
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-ccccc
Confidence 65544443222112222 244443311000 01123578999999887555432221 11111
Q ss_pred EEEE-CCEEEEEcCCC-CCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCC
Q 005735 535 AAEL-NGVLYATGGYD-GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 535 ~~~~-~g~Lyv~GG~~-~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~ 610 (680)
...- +++.+++.... .......++.+|......+.+............+.. +++ |+......+ .....++++|+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~ 272 (388)
T 3pe7_A 194 IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG-SPDRFIYSADPE 272 (388)
T ss_dssp EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT-CCCEEEEEECTT
T ss_pred EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCC-CCcceEEEEecC
Confidence 2222 34433332221 112245799999888776666543221111222222 554 444332221 112259999999
Q ss_pred CCcEEEcCCC
Q 005735 611 LGSWMSGEPM 620 (680)
Q Consensus 611 t~~W~~v~~l 620 (680)
++.-+.+..+
T Consensus 273 ~g~~~~l~~~ 282 (388)
T 3pe7_A 273 TLENRQLTSM 282 (388)
T ss_dssp TCCEEEEEEE
T ss_pred CCceEEEEcC
Confidence 8877665443
No 171
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.43 E-value=0.97 Score=45.26 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred EEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCc-cceEEEEE-C-CEEEEEecCCCCCccceEEEEeCCCCcEEECC
Q 005735 401 IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSAR-SYASAAML-N-GELYIFGGGDGNSWHNTVESYSPANDEWTSRP 477 (680)
Q Consensus 401 Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R-~~~s~v~~-~-~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~ 477 (680)
+++.++.+ ..+..+|+.+++....-.++... ....++.. + ..+|+.++.. ..++++|..+.+-...-
T Consensus 3 ~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 3 YILAPARP-----DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEETT-----TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEE
T ss_pred EEEEcCCC-----CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeE
Confidence 45555432 46889999887654332222211 12223332 4 4788776533 46899999887653321
Q ss_pred CCCCC----CcccEEEEE-CC-EEEEEccC---CCCc---ccceEEEEeCCCccEEEcccccccccceEEEEE-CCE-EE
Q 005735 478 SLNGT----KGSLAGATI-DN-KIFAIGGG---NGLE---CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGV-LY 543 (680)
Q Consensus 478 ~lp~~----r~~~a~~v~-~g-kIyV~GG~---~~~~---~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~-Ly 543 (680)
..+.+ ..-...+.. ++ .+|+.... .... ....+.+||+.+.+....-+... ....++.. +++ ||
T Consensus 73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKLY 150 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCEE
T ss_pred EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC--CcceeEECCCCCEEE
Confidence 11110 011223332 44 57776321 0011 13678999998876543222221 11222222 444 66
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
+.+ ..+++||+.+.+-..
T Consensus 151 ~~~--------~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 151 GLG--------RDLHVMDPEAGTLVE 168 (337)
T ss_dssp EES--------SSEEEEETTTTEEEE
T ss_pred EeC--------CeEEEEECCCCcEee
Confidence 652 368999998876543
No 172
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.42 E-value=0.76 Score=47.61 Aligned_cols=182 Identities=10% Similarity=0.016 Sum_probs=93.6
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcc-cEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEc
Q 005735 447 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGS-LAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 523 (680)
Q Consensus 447 ~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~-~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i 523 (680)
.+++.|+.+ ..+.+||..+.+....-........ .+++.. ++.+++.|+.+ ..+.+||+.+.....+
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~ 156 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVF 156 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEE
Confidence 566667654 3578889887766544332111222 233333 34677776654 3577899987665554
Q ss_pred cccccccc-ceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCC
Q 005735 524 RSMLQKRF-ALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSA 599 (680)
Q Consensus 524 ~~~p~~r~-~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~ 599 (680)
........ ..+++.. ++.+++.|+.++ .+.+||........+... .....+++.. ++. +++.|+.+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d--- 226 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTG-----RLLLLGLDGHEIFKEKLH--KAKVTHAEFNPRCDWLMATSSVD--- 226 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTS-----EEEEEETTSCEEEEEECS--SSCEEEEEECSSCTTEEEEEETT---
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCC-----CEEEEECCCCEEEEeccC--CCcEEEEEECCCCCCEEEEEeCC---
Confidence 33221111 1222222 566777777653 788999865444333321 1122223322 344 77777754
Q ss_pred CCCeEEEEeCCC----CcEEEcCCCCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 600 MVPSIEVYDPRL----GSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 600 ~~~~v~~yD~~t----~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
..+.+||+.+ ......- .......+++.. ++.+++.|+.++ .+.+|+..
T Consensus 227 --~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~------~i~iwd~~ 281 (383)
T 3ei3_B 227 --ATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRN------EIRVYSSY 281 (383)
T ss_dssp --SEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSS------EEEEEETT
T ss_pred --CEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCC------cEEEEECC
Confidence 3588899876 3332211 111122222222 456777776543 46666643
No 173
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.41 E-value=3.2 Score=47.46 Aligned_cols=250 Identities=10% Similarity=-0.043 Sum_probs=126.0
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCC---CCCCc-cceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP---MSSAR-SYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~---mp~~R-~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
++.+|.+-- .+......+++.+.....|+.+-. +.... .......+ +++.++++...++.....++++|..++
T Consensus 83 G~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg 161 (710)
T 2xdw_A 83 GKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA 161 (710)
T ss_dssp TTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT
T ss_pred CCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC
Confidence 455554432 222334567888877777765522 11111 11222222 666666554332222347999999999
Q ss_pred cEEECCCCCCCCcccEEEEE-CCEEEEEccCCCC-----------cccceEEEEeCCCccEE--Eccccc-ccccceEEE
Q 005735 472 EWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGL-----------ECFSDVEMLDLDIGKWI--RTRSML-QKRFALAAA 536 (680)
Q Consensus 472 ~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~-----------~~~~~ve~yD~~t~~W~--~i~~~p-~~r~~~s~~ 536 (680)
+...... .... ....+.. +|+.++++..+.. .....++.+++.++... .+...+ .+.......
T Consensus 162 ~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 162 KELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp EEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 8765311 1111 1123333 6664444443322 23456888898887632 221111 122222222
Q ss_pred E-ECCEEEEEcCCCCCCcCceeEEEeCCC------C--cEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEE
Q 005735 537 E-LNGVLYATGGYDGNEYMNSAERFDPRE------H--YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVY 607 (680)
Q Consensus 537 ~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t------~--~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~y 607 (680)
. -+|+.++++........+.++++|..+ . .++.+..-.... ......-++.||+.+..+. ....++++
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~--~~~~l~~~ 316 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS--PNYRLINI 316 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC--TTCEEEEE
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC--CCCEEEEE
Confidence 2 255544444332222246899999876 4 577775432222 1222334778888865432 24579999
Q ss_pred eCCCC---cEEEcCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcC
Q 005735 608 DPRLG---SWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 608 D~~t~---~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
|+.+. .|+.+-+-........++.. ++++++....+. ...+++++.
T Consensus 317 d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~ 366 (710)
T 2xdw_A 317 DFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDL 366 (710)
T ss_dssp ETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT----EEEEEEEET
T ss_pred eCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEEC
Confidence 99875 58876432221222334445 677777664432 245677776
No 174
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.40 E-value=8.6 Score=43.98 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCC--------ccceEEEEECCEEEEEecCCCCCccceEEEEe
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSA--------RSYASAAMLNGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~--------R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
++.||+.... ..++.+|..+++ |+.-...+.. ....+.++.++.||+.... ..++.+|
T Consensus 77 ~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d------g~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD------GRLIALD 144 (677)
T ss_dssp TTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT------SEEEEEE
T ss_pred CCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCC------CEEEEEE
Confidence 7888887652 468999998875 8765443211 1123456678999886431 4689999
Q ss_pred CCCCc--EEECCC-CCC--CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEc
Q 005735 468 PANDE--WTSRPS-LNG--TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRT 523 (680)
Q Consensus 468 ~~t~~--W~~l~~-lp~--~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i 523 (680)
..|++ |+.-.. -.. .....+-++.+++||+..+.........+..||..+++ |+.-
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 98764 765422 111 11222345668899886543222234578999999875 8653
No 175
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=94.36 E-value=4.3 Score=41.21 Aligned_cols=240 Identities=7% Similarity=-0.061 Sum_probs=123.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCC------------------CCccceEEEEE--CCEEEE
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMS------------------SARSYASAAML--NGELYI 450 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp------------------~~R~~~s~v~~--~~~IyV 450 (680)
....+..++.++.++-. ...+++||+.++.+....... .....++++.. ++.|||
T Consensus 22 ~~i~~d~~g~~l~v~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQ-----DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp CCEECCTTCSSEEEECT-----TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred eEEEEcCCCCEEEEEcC-----CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 34555556664444432 246899999887766542110 01123556665 588998
Q ss_pred EecCCCCCccceEEEEeCCCCcEEECCCCCC--CCcccEEEEE---CCEEEEEccCCC------------CcccceEEEE
Q 005735 451 FGGGDGNSWHNTVESYSPANDEWTSRPSLNG--TKGSLAGATI---DNKIFAIGGGNG------------LECFSDVEML 513 (680)
Q Consensus 451 ~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~--~r~~~a~~v~---~gkIyV~GG~~~------------~~~~~~ve~y 513 (680)
.... ..+.+||+.++..+.+..... +........+ +|.||+...... ......+++|
T Consensus 97 ~d~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 97 VDCY------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EETT------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EECC------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 7532 237889988765544432111 1111122222 568998743211 0112468999
Q ss_pred eCCCccEEEcccccccccceEEEEE-CC-EEEEEcCCCCCCcCceeEEEeCCC---CcEEEeccCCCCCceeEEEEE-CC
Q 005735 514 DLDIGKWIRTRSMLQKRFALAAAEL-NG-VLYATGGYDGNEYMNSAERFDPRE---HYWTKIANMNRRRGCHSLAVL-NG 587 (680)
Q Consensus 514 D~~t~~W~~i~~~p~~r~~~s~~~~-~g-~Lyv~GG~~~~~~~~~v~~yD~~t---~~W~~v~~~p~~r~~~s~v~~-~~ 587 (680)
|+.+++...+..- ......++.- ++ .||+.-.. ...|++|++.. ..++.+..++. ...++.- ++
T Consensus 171 d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d~~G 240 (322)
T 2fp8_A 171 DPSTKETTLLLKE--LHVPGGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRNADG 240 (322)
T ss_dssp ETTTTEEEEEEEE--ESCCCEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEECSS---EEEEEECTTS
T ss_pred eCCCCEEEEeccC--CccCcceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEeCCC---CCCeEECCCC
Confidence 9988776543210 1111223333 33 58886322 24789999875 34444433322 2233332 56
Q ss_pred EEEEEeccCCC-----CCCCeEEEEeCCCCcEEEcCCCCC---CccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 588 KLYALGGFDGS-----AMVPSIEVYDPRLGSWMSGEPMKL---SRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 588 ~IyviGG~~~~-----~~~~~v~~yD~~t~~W~~v~~lp~---~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.||+....... .....+.+||+....-..+.. +. .....+++.-+++|||.+... ..+.+|++.
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~~~~------~~i~~~~~~ 312 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAGEHFEQIQEHDGLLYIGTLFH------GSVGILVYD 312 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTTSCCCEEEEETTEEEEECSSC------SEEEEEEC-
T ss_pred CEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCccccceEEEEeCCEEEEeecCC------CceEEEecc
Confidence 78887542100 012458899987654444432 11 122334445688999875332 346777654
No 176
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.36 E-value=1.1 Score=45.12 Aligned_cols=188 Identities=12% Similarity=0.167 Sum_probs=90.1
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKW 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W 520 (680)
+++.++.|+.++ .+.+||..+.+.+.+..+..-...-.++.+ ++.+++.|+.+ ..+.++|+.++.|
T Consensus 20 ~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 20 YGKRMATCSSDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVMIWKEENGRW 89 (297)
T ss_dssp TSSEEEEEETTS-----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEEEEEEBSSSCB
T ss_pred CCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEEEEEEcCCCce
Confidence 566777777653 577788765433222222111111122222 25677777755 3477899988877
Q ss_pred EEcccccccccceEEEEE--C--CEEEEEcCCCCCCcCceeEEEeCCCCc-EEEeccCCCCCceeEEEEE----------
Q 005735 521 IRTRSMLQKRFALAAAEL--N--GVLYATGGYDGNEYMNSAERFDPREHY-WTKIANMNRRRGCHSLAVL---------- 585 (680)
Q Consensus 521 ~~i~~~p~~r~~~s~~~~--~--g~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~~~p~~r~~~s~v~~---------- 585 (680)
..+..+.........+.+ + +.+++.|+.++ .+.+||..+.. +.............++...
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~-----~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC-----cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence 554332211112222333 1 56677777654 57778876542 2111000111111111111
Q ss_pred ----CCEEEEEeccCCCCCCCeEEEEeCCC--CcEEEcCCCCCCccceEEEEE--C---CEEEEEecccCCCcccceEEE
Q 005735 586 ----NGKLYALGGFDGSAMVPSIEVYDPRL--GSWMSGEPMKLSRGYLGAAVV--K---EAIYVIGGVKNGSEIVDTVER 654 (680)
Q Consensus 586 ----~~~IyviGG~~~~~~~~~v~~yD~~t--~~W~~v~~lp~~R~~~s~v~~--~---~~lyV~GG~~~~~~~~~~ve~ 654 (680)
++++++.|+.++ .|.+||..+ ..|..+..+.........+.+ + +.+++.|+.++ ++.+
T Consensus 165 ~~~~~~~~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~------~v~i 233 (297)
T 2pm7_B 165 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR------TCII 233 (297)
T ss_dssp -----CCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS------CEEE
T ss_pred CCCCCcceEEEEcCCC-----cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC------cEEE
Confidence 135677777653 366676654 346544433322222233333 2 36777777654 3555
Q ss_pred EcCC
Q 005735 655 FKEG 658 (680)
Q Consensus 655 y~~~ 658 (680)
|+..
T Consensus 234 Wd~~ 237 (297)
T 2pm7_B 234 WTQD 237 (297)
T ss_dssp EEES
T ss_pred EEeC
Confidence 5543
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.30 E-value=10 Score=43.93 Aligned_cols=195 Identities=10% Similarity=0.086 Sum_probs=111.0
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC-cc-ceEEEEE-CCEEEEEecCCCCCccceEEEEe
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA-RS-YASAAML-NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~-R~-~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
.+.....++.|++... .-+.+||+.++++......... .. -.+++.. ++.|++... ..+++||
T Consensus 91 ~~i~~d~~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-------~gl~~~~ 156 (795)
T 4a2l_A 91 RIVKTDSQGRVWIGTR-------DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP-------EGLIMFD 156 (795)
T ss_dssp EEEEECTTSCEEEEES-------SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET-------TEEEEEE
T ss_pred eEEEECCCCCEEEEeC-------CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC-------CceEEEE
Confidence 3444555777886442 2389999999988776432111 11 2233333 788887543 2489999
Q ss_pred CCCCcEEECCC-CCCCCcccEEE-EECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEE-EECCEEEE
Q 005735 468 PANDEWTSRPS-LNGTKGSLAGA-TIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAA-ELNGVLYA 544 (680)
Q Consensus 468 ~~t~~W~~l~~-lp~~r~~~a~~-v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~-~~~g~Lyv 544 (680)
+.++++..... .+....-.+.. .-++.||+... ...+..||+.++++......+......++. --++.||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~------~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi 230 (795)
T 4a2l_A 157 IKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTS------TDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV 230 (795)
T ss_dssp TTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEES------SSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE
T ss_pred CCCCEEEeccCCCCCCcceEEEEECCCCCEEEEEC------CCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE
Confidence 99988876543 11001011222 23788888421 124789999999988764322222222222 23678887
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCC---C---CCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMN---R---RRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p---~---~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
... ...+++||+.+++++.....+ . .....+++.. ++.|++.. . ..+.+||+.+..+..+
T Consensus 231 gt~------~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~------~Gl~~~~~~~~~~~~~ 297 (795)
T 4a2l_A 231 ATE------GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-F------NDLNIYHEGTDSFASY 297 (795)
T ss_dssp EEB------SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-S------SCEEEEETTTTEEEEE
T ss_pred EEC------CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-C------ChhheEcCCCCeEEEE
Confidence 431 124889999998888774321 1 1122233332 56666632 2 2478999999999876
Q ss_pred C
Q 005735 618 E 618 (680)
Q Consensus 618 ~ 618 (680)
.
T Consensus 298 ~ 298 (795)
T 4a2l_A 298 S 298 (795)
T ss_dssp C
T ss_pred e
Confidence 4
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.14 E-value=1.9 Score=44.40 Aligned_cols=217 Identities=9% Similarity=-0.091 Sum_probs=102.9
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEec---CC-------------
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGG---GD------------- 455 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG---~~------------- 455 (680)
.+.+++..++++..+ ..++++|+.+++-..+...+........... ++..++.-- ..
T Consensus 87 ~~spdg~~l~~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 87 FLSPDDDALFYVKDG-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp EECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred EEcCCCCEEEEEeCC-----CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 344555544444422 3689999998876666544443222222222 343333110 00
Q ss_pred -CCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCC-CcccceEEEEeCCCccEEEcccccccccc
Q 005735 456 -GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNG-LECFSDVEMLDLDIGKWIRTRSMLQKRFA 532 (680)
Q Consensus 456 -~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~-~~~~~~ve~yD~~t~~W~~i~~~p~~r~~ 532 (680)
.......++++|..+++-+.+..-+. ...+....- +++.+++..... ......++.+|+.+.....+.........
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred hccCCcceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 01123679999999887655532211 112222223 455443332221 12245789999988776665432211111
Q ss_pred eEEEEE--CCE-EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCC------CceeEEEEECCEEEEEe----ccCCCC
Q 005735 533 LAAAEL--NGV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR------RGCHSLAVLNGKLYALG----GFDGSA 599 (680)
Q Consensus 533 ~s~~~~--~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~------r~~~s~v~~~~~IyviG----G~~~~~ 599 (680)
....+ +|+ |+.+....+ .....++++|+.+++-+.+..++.. ........-+..|++.. |+. ..
T Consensus 241 -~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~ 317 (388)
T 3pe7_A 241 -THEFWVPDGSALVYVSYLKG-SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK-IE 317 (388)
T ss_dssp -EEEEECTTSSCEEEEEEETT-CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------C
T ss_pred -ccceECCCCCEEEEEecCCC-CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc-cC
Confidence 11123 554 544332221 1122599999999887776554420 00001111122333221 000 01
Q ss_pred CCCeEEEEeCCCCcEEEcCC
Q 005735 600 MVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 600 ~~~~v~~yD~~t~~W~~v~~ 619 (680)
....++++|+.++.-..+..
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEeccCCceEEecc
Confidence 23579999999887776643
No 179
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.09 E-value=5.6 Score=40.14 Aligned_cols=208 Identities=11% Similarity=0.034 Sum_probs=106.9
Q ss_pred EEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCC
Q 005735 426 IKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNG 503 (680)
Q Consensus 426 W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~ 503 (680)
.+.+...|.......++.. ++.||+..-.. ..+++||+.... ...-..+ ..-++.+.- ++++||......
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g~~-~~~~~~~--~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEV-----GEIVSITPDGNQ-QIHATVE--GKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTT-----TEEEEECTTCCE-EEEEECS--SEEEEEEECTTSCEEEEEECTT
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCC-----CeEEEECCCCce-EEEEeCC--CCceeEEEcCCCcEEEEeccCC
Confidence 3333334444444455543 56788875322 468899987643 2211111 112222322 678988753211
Q ss_pred CcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCc---EEEecc----CCC
Q 005735 504 LECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHY---WTKIAN----MNR 575 (680)
Q Consensus 504 ~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~---W~~v~~----~p~ 575 (680)
...+..||+.+++.+.+...+..++....+.. ++.+|+... ....++++|+.+.. |..-+. .+.
T Consensus 94 ---~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~ 165 (306)
T 2p4o_A 94 ---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSE 165 (306)
T ss_dssp ---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred ---cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCcccccccc
Confidence 12477899888888766555544444343333 456777532 12478999987642 211111 111
Q ss_pred C--CceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC-CcE---EEcCCCCCCccceEEEEE-CCEEEEEecccCCCcc
Q 005735 576 R--RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL-GSW---MSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEI 648 (680)
Q Consensus 576 ~--r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t-~~W---~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~ 648 (680)
. .....+..-++.||+..- ....|++||+.. .+. ..+.....| ..+++- +++|||.-...
T Consensus 166 ~~~~~pngis~dg~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~~~P---~gi~vd~dG~l~va~~~~----- 232 (306)
T 2p4o_A 166 SVFPAANGLKRFGNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHIY----- 232 (306)
T ss_dssp CCSCSEEEEEEETTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBTT-----
T ss_pred CCCCcCCCcCcCCCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEeccCCC---CCeEECCCCCEEEEeCCC-----
Confidence 1 122233333567888753 246799999864 221 111112122 233333 57788775422
Q ss_pred cceEEEEcCCCCeEe
Q 005735 649 VDTVERFKEGQGWEE 663 (680)
Q Consensus 649 ~~~ve~y~~~~~W~~ 663 (680)
+.|.+|++..+...
T Consensus 233 -~~V~~~~~~G~~~~ 246 (306)
T 2p4o_A 233 -NSVVRIAPDRSTTI 246 (306)
T ss_dssp -CCEEEECTTCCEEE
T ss_pred -CeEEEECCCCCEEE
Confidence 34778887654433
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.08 E-value=3.8 Score=40.71 Aligned_cols=196 Identities=14% Similarity=0.053 Sum_probs=102.9
Q ss_pred eEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
.....+++ .||+++..+ ..+++||+.++ ...+... . ....+++.. ++.+|+..... ..+.+||+.
T Consensus 32 g~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~-~~~~~~~-~-~~~~~l~~~~dg~l~v~~~~~-----~~i~~~d~~ 98 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ-LSPEMHP-S-HHQNGHCLNKQGHLIACSHGL-----RRLERQREP 98 (296)
T ss_dssp EEEEEGGGTEEEEEEGGG-----TEEEEEETTSC-EEEEESS-C-SSEEEEEECTTCCEEEEETTT-----TEEEEECST
T ss_pred CCeEeCCCCEEEEEeCCC-----CEEEEEECCCC-eEEEECC-C-CCcceeeECCCCcEEEEecCC-----CeEEEEcCC
Confidence 44555555 488877543 36899999988 5555321 1 122333332 67788765422 368999998
Q ss_pred CCcEEECCCCC----CCCcccEEEEECCEEEEE----ccCC--------CCcccceEEEEeCCCccEEEcccccccccce
Q 005735 470 NDEWTSRPSLN----GTKGSLAGATIDNKIFAI----GGGN--------GLECFSDVEMLDLDIGKWIRTRSMLQKRFAL 533 (680)
Q Consensus 470 t~~W~~l~~lp----~~r~~~a~~v~~gkIyV~----GG~~--------~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~ 533 (680)
+++.+.+.... ..+....++.-+|++|+. |... .......++.||+. ++...+..- ....
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~ 174 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RVKP 174 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CSSE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CCCC
Confidence 88876653211 111122222336789886 3210 00112478889887 554443211 1111
Q ss_pred EEEEE--CCEEEEEcCCCCCCcCceeEEEeCC-CCcE---EEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEE
Q 005735 534 AAAEL--NGVLYATGGYDGNEYMNSAERFDPR-EHYW---TKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEV 606 (680)
Q Consensus 534 s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~-t~~W---~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~ 606 (680)
....+ ++++++.+..+ ..+++||.. +++. ..+-... ......++.- ++.||+..+ ..|.+
T Consensus 175 ~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~-------~~v~~ 241 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASAG-------DGVHV 241 (296)
T ss_dssp EEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEET-------TEEEE
T ss_pred ccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEcC-------CeEEE
Confidence 22233 56666443322 478899886 4555 1221111 1111223332 677888761 46899
Q ss_pred EeCCCCcEEEc
Q 005735 607 YDPRLGSWMSG 617 (680)
Q Consensus 607 yD~~t~~W~~v 617 (680)
||++......+
T Consensus 242 ~~~~g~~~~~~ 252 (296)
T 3e5z_A 242 LTPDGDELGRV 252 (296)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99986554444
No 181
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.07 E-value=6.4 Score=41.35 Aligned_cols=204 Identities=11% Similarity=-0.012 Sum_probs=110.0
Q ss_pred EEEEeCCC--CeEEEcCCCCCCccceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCC---CCCC----
Q 005735 416 LELYLPSC--DVIKTLKPMSSARSYASAAML---NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL---NGTK---- 483 (680)
Q Consensus 416 v~~yd~~t--~~W~~l~~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~l---p~~r---- 483 (680)
+++++... .+|..+.+.......++++.. .+.||+.+.... .-..+++.+....+|+.+... +...
T Consensus 33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~ 110 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAFNKAPEGET 110 (394)
T ss_dssp EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC----
T ss_pred eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCccccCCCcccccc
Confidence 67776654 689876422222334445444 467887654321 112477777778899988532 2111
Q ss_pred ---ccc--EEEEE----CCEEEEEccCCCCcccceEEEEeCCCccEEEcccc---cc--------------cccceEEEE
Q 005735 484 ---GSL--AGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM---LQ--------------KRFALAAAE 537 (680)
Q Consensus 484 ---~~~--a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~---p~--------------~r~~~s~~~ 537 (680)
... +.+.- .+.||+.+. ...+++.+-...+|+.+... |. ....+++++
T Consensus 111 ~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~ 184 (394)
T 3b7f_A 111 GRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILV 184 (394)
T ss_dssp CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEE
T ss_pred cccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEE
Confidence 011 22222 466777542 13466777777899987532 21 111223333
Q ss_pred E---CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC------CCC-----CceeEEEEE-C--CEEEEEeccCCCCC
Q 005735 538 L---NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM------NRR-----RGCHSLAVL-N--GKLYALGGFDGSAM 600 (680)
Q Consensus 538 ~---~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~------p~~-----r~~~s~v~~-~--~~IyviGG~~~~~~ 600 (680)
. .+.||+.... ..+++.+....+|+.+... |.. ...+.++.. . +.||+...
T Consensus 185 d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~------ 252 (394)
T 3b7f_A 185 DPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH------ 252 (394)
T ss_dssp CTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET------
T ss_pred CCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC------
Confidence 2 3567775432 2477777777899988531 211 123444443 2 56666421
Q ss_pred CCeEEEEeCCCCcEEEcCC-CCCC--ccceEEEEE---CCEEEEEe
Q 005735 601 VPSIEVYDPRLGSWMSGEP-MKLS--RGYLGAAVV---KEAIYVIG 640 (680)
Q Consensus 601 ~~~v~~yD~~t~~W~~v~~-lp~~--R~~~s~v~~---~~~lyV~G 640 (680)
..+++.+-...+|+.+.. ++.. .....++.. .+.||+..
T Consensus 253 -~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 253 -CGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp -TEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred -CeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 348888888899999864 4432 222333332 36677763
No 182
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.06 E-value=7.2 Score=43.69 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=68.9
Q ss_pred CCEEEEEecCCCCcccCeEEEEeC-CCC--eEEEcCCCCCC--------ccceEEEEECCEEEEEecCCCCCccceEEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLP-SCD--VIKTLKPMSSA--------RSYASAAMLNGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~-~t~--~W~~l~~mp~~--------R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vy 466 (680)
++.||+.... ...++.+|. .++ .|+.-...... ....+.++.++.||+... ...++.+
T Consensus 62 ~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~al 130 (571)
T 2ad6_A 62 GDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLAL 130 (571)
T ss_dssp TTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEE
T ss_pred CCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEEE
Confidence 8888887652 235899999 776 48765433211 112345667999998643 1368999
Q ss_pred eCCCC--cEEECCCC-CCC-CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEc
Q 005735 467 SPAND--EWTSRPSL-NGT-KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRT 523 (680)
Q Consensus 467 D~~t~--~W~~l~~l-p~~-r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i 523 (680)
|..++ .|+.-..- +.. ....+-++.+++||+..+.........+..||..+++ |+.-
T Consensus 131 D~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 131 DAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 99877 58653211 110 1122335568999886543211123578999998874 8653
No 183
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.05 E-value=0.79 Score=48.00 Aligned_cols=185 Identities=18% Similarity=0.191 Sum_probs=93.8
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCcEEECC--CCCCCCccc-EEEEE---CCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 446 GELYIFGGGDGNSWHNTVESYSPANDEWTSRP--SLNGTKGSL-AGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 446 ~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~--~lp~~r~~~-a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
+..++.|+.+ ..+.+||..+++-...- ..+...... .+..+ ++.+++.|+.++ .+.+||+....
T Consensus 170 ~~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~ 239 (380)
T 3iz6_a 170 ETRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITS 239 (380)
T ss_dssp SSCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTC
T ss_pred CCEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCC
Confidence 3445566654 35788998887653321 122222221 12222 567888887664 46688876321
Q ss_pred --EEEcccccccccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCC------ceeEEEE-ECCEE
Q 005735 520 --WIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR------GCHSLAV-LNGKL 589 (680)
Q Consensus 520 --W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r------~~~s~v~-~~~~I 589 (680)
-..+..-.. .-.+++.. ++..++.|+.++ .+.+||..++.-...-.....+ ...+++. .++.+
T Consensus 240 ~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 240 RAVRTYHGHEG--DINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312 (380)
T ss_dssp CCCEEECCCSS--CCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred cceEEECCcCC--CeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence 111111000 11122222 567778887764 6888999887644332111111 1122222 26777
Q ss_pred EEEeccCCCCCCCeEEEEeCCCCcEEE-cCCCCCC-cc-ceEEEE-ECCEEEEEecccCCCcccceEEEEcCC
Q 005735 590 YALGGFDGSAMVPSIEVYDPRLGSWMS-GEPMKLS-RG-YLGAAV-VKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 590 yviGG~~~~~~~~~v~~yD~~t~~W~~-v~~lp~~-R~-~~s~v~-~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
++.|+.+ ..+.+||..+..-.. +..+... .. -.+++. -++..++.||.++. +.+|+..
T Consensus 313 l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~------i~iW~~~ 374 (380)
T 3iz6_a 313 LFAGYSN-----GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN------LKIWAFS 374 (380)
T ss_dssp EEEECTT-----SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC------EEEEECC
T ss_pred EEEEECC-----CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC------EEEEecC
Confidence 7777654 358899987765432 3222221 11 122222 26778888887653 5666543
No 184
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.97 E-value=0.29 Score=52.45 Aligned_cols=146 Identities=11% Similarity=0.043 Sum_probs=73.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCc-ccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKG-SLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~-~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
++.+++.|+.++ .|.+||..+..-...-.+..... -.+++.. ++.+++.|+.++ .+-+||+.++...
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~~~~ 200 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFKGNILR 200 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEEETTSCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeeccCCcee
Confidence 345666777653 47778877654322211111111 1223332 456667776553 4678898877655
Q ss_pred Eccccccc-ccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCC
Q 005735 522 RTRSMLQK-RFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDG 597 (680)
Q Consensus 522 ~i~~~p~~-r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~ 597 (680)
.+...... ....++... ++.+++.|+.++ .+.+||.....-..+.. ......+++.. +..+++.|+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~~~~~~~--h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKELWNLRM--HKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCBCCCSBC--CSSCEEEEEECTTCSSEEEEEETTS
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcceeEEEec--ccceEEeeeecCCCceEEEEecCcc
Confidence 44322111 112222222 677788887664 57888886543221111 11112222222 344677777653
Q ss_pred CCCCCeEEEEeCCCC
Q 005735 598 SAMVPSIEVYDPRLG 612 (680)
Q Consensus 598 ~~~~~~v~~yD~~t~ 612 (680)
.|.+||+.+.
T Consensus 274 -----~v~iwd~~~~ 283 (435)
T 4e54_B 274 -----TVKIWDLRQV 283 (435)
T ss_dssp -----BCCEEETTTC
T ss_pred -----eeeEEecccc
Confidence 3567887654
No 185
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.86 E-value=4.2 Score=46.94 Aligned_cols=213 Identities=10% Similarity=0.136 Sum_probs=109.8
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCC--CC---CCccceEEEEE-CCEEEEEecCCCCCccceEEE
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKP--MS---SARSYASAAML-NGELYIFGGGDGNSWHNTVES 465 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~--mp---~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~v 465 (680)
+.....++.|++.. . .-+.+||+.++++..... .. .....+++... ++.|+|. ... .-+++
T Consensus 377 ~i~~d~~g~lWigt-~------~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig-T~~-----~Gl~~ 443 (758)
T 3ott_A 377 HIYEDKEQQLWIAT-D------GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIS-TCL-----GGIFV 443 (758)
T ss_dssp EEEECTTSCEEEEE-T------TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEE-ESS-----SCEEE
T ss_pred EEEECCCCCEEEEe-C------CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEE-ECC-----CceEE
Confidence 33444567777643 1 238999999998876531 11 11122333332 5778873 221 12677
Q ss_pred EeCCC------CcEE---E---CCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEccc--ccc
Q 005735 466 YSPAN------DEWT---S---RPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS--MLQ 528 (680)
Q Consensus 466 yD~~t------~~W~---~---l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~--~p~ 528 (680)
||+.+ ..+. . ...++. ....+.+ +|.|+++||.. ..+.+||+.++++..... +..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~i~~i~~d~~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~ 515 (758)
T 3ott_A 444 VDKHKLMQSTSGQYIAEQNYSVHNGLSG---MFINQIIPDNEGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTG 515 (758)
T ss_dssp EEHHHHHHCCSSEEECSEEECGGGTCSC---SCEEEEEECTTSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCG
T ss_pred EccccccccCCcceeccccccccccccc---ceeeeEEEcCCCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCC
Confidence 77653 1221 1 111221 1122222 57799866543 347899999999887632 111
Q ss_pred cccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec--cCCCCCceeEEEEECCEEEEEeccCCCCCCCeEE
Q 005735 529 KRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIA--NMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIE 605 (680)
Q Consensus 529 ~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~--~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~ 605 (680)
.....++..- +|.||+-. . .-+.+||+.++.++... .+|. ....+++.-++.|++... ..+.
T Consensus 516 ~~~~~~i~~d~~g~lWigt-~------~Gl~~~~~~~~~~~~~~~~gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~ 580 (758)
T 3ott_A 516 EKSPNYLLCDEDGLLWVGF-H------GGVMRINPKDESQQSISFGSFSN-NEILSMTCVKNSIWVSTT-------NGLW 580 (758)
T ss_dssp GGCEEEEEECTTSCEEEEE-T------TEEEEECC--CCCCBCCCCC----CCEEEEEEETTEEEEEES-------SCEE
T ss_pred CcccceEEECCCCCEEEEe-c------CceEEEecCCCceEEecccCCCc-cceEEEEECCCCEEEECC-------CCeE
Confidence 1111222222 57888743 1 24889999888776553 2332 223344445788887642 3488
Q ss_pred EEeCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEeccc
Q 005735 606 VYDPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVK 643 (680)
Q Consensus 606 ~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~ 643 (680)
.||+.+.+..... ++..... .++.. ++.|| |||..
T Consensus 581 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~G~l~-fG~~~ 617 (758)
T 3ott_A 581 IIDRKTMDARQQN-MTNKRFT-SLLFDPKEDCVY-LGGAD 617 (758)
T ss_dssp EEETTTCCEEEC---CCCCCS-EEEEETTTTEEE-EECBS
T ss_pred EEcCCCceeEEec-CCCCcee-eeEEECCCCcEE-EecCC
Confidence 9999998877643 2222222 23333 45554 56554
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.82 E-value=4.2 Score=45.65 Aligned_cols=239 Identities=12% Similarity=0.037 Sum_probs=122.6
Q ss_pred CCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC--CCc
Q 005735 397 PSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA--NDE 472 (680)
Q Consensus 397 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~--t~~ 472 (680)
+++.+|+.... .+.+.++|..+++.... ++.....|.++.. +..+|+.+. + ..+.+||.. +.+
T Consensus 165 ~~~~~~V~~~~-----~~~V~viD~~t~~v~~~--i~~g~~p~~v~~SpDGr~lyv~~~-d-----g~V~viD~~~~t~~ 231 (567)
T 1qks_A 165 LENLFSVTLRD-----AGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVIGR-D-----GKVNMIDLWMKEPT 231 (567)
T ss_dssp GGGEEEEEETT-----TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCC
T ss_pred CCceEEEEeCC-----CCeEEEEECCCCeEEEE--EeCCCCccceEECCCCCEEEEEcC-C-----CeEEEEECCCCCCc
Confidence 35677776653 24799999998754321 2233333444433 567887652 2 469999985 443
Q ss_pred EEECCCCCCCCcccEEEEE-----CC-EEEEEccCCCCcccceEEEEeCCCccEEEc---ccc--------cccccceEE
Q 005735 473 WTSRPSLNGTKGSLAGATI-----DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRT---RSM--------LQKRFALAA 535 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~-----~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i---~~~--------p~~r~~~s~ 535 (680)
- +..++....-...+.. +| .+|+... ..+.+.++|..+.+=... ..+ |.+|.....
T Consensus 232 ~--v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~-----~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 232 T--VAEIKIGSEARSIETSKMEGWEDKYAIAGAY-----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp E--EEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred E--eEEEecCCCCceeEEccccCCCCCEEEEEEc-----cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 2 2222222222233333 45 4676532 345677889777553221 111 122322222
Q ss_pred EEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 536 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 536 ~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+..++..+++-- .....+++.|..+.....+..++..+..|..... +++ +|+.... .+.|.++|.++++
T Consensus 305 ~s~~~~~~vv~~----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~k 375 (567)
T 1qks_A 305 ASHYRPEFIVNV----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGK 375 (567)
T ss_dssp ECSSSSEEEEEE----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTE
T ss_pred EcCCCCEEEEEe----cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCc
Confidence 222333333321 1124788888877766666555666666655443 344 4444332 4678999999875
Q ss_pred EEE---c-CCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC------CCeEecccCCC
Q 005735 614 WMS---G-EPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG------QGWEEINSRAI 669 (680)
Q Consensus 614 W~~---v-~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~------~~W~~v~~~p~ 669 (680)
-.. + +..|.+.++.....- ++.+|+.+-... .+|-+++.. ..|+.+..++.
T Consensus 376 l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~-----~~Vsvid~~~~~~~~~~~kvv~~i~~ 437 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-----DSVALIGTDPEGHPDNAWKILDSFPA 437 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC-----CeEEEecCCCCCCccccCEEEEEEec
Confidence 332 3 445555333332222 356776653332 235666543 12776655443
No 187
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.81 E-value=4 Score=41.67 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=38.2
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEE-cCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKT-LKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~-l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++.+++.|+.+ ..+.++|..+++... +... . ..-.+++.. ++..++.||.+ ..+.+||..
T Consensus 81 ~~~~~~~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~h-~-~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~ 148 (343)
T 2xzm_R 81 DLALSQENCFAISSSWD-----KTLRLWDLRTGTTYKRFVGH-Q-SEVYSVAFSPDNRQILSAGAE-----REIKLWNIL 148 (343)
T ss_dssp EEEECSSTTEEEEEETT-----SEEEEEETTSSCEEEEEECC-C-SCEEEEEECSSTTEEEEEETT-----SCEEEEESS
T ss_pred EEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCC-C-CcEEEEEECCCCCEEEEEcCC-----CEEEEEecc
Confidence 34455677777788765 357888988765432 2111 1 111222222 56666677755 357788876
Q ss_pred CCc
Q 005735 470 NDE 472 (680)
Q Consensus 470 t~~ 472 (680)
...
T Consensus 149 ~~~ 151 (343)
T 2xzm_R 149 GEC 151 (343)
T ss_dssp SCE
T ss_pred CCc
Confidence 443
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.75 E-value=6.2 Score=39.49 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=103.0
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC-eEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEe
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD-VIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~-~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
.....+.+++.|++.+. ..+..||+... .|+.-.. .....+++... ++.+++..... ...++.+|
T Consensus 39 ~~~~~~~pdG~ilvs~~-------~~V~~~d~~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd 105 (276)
T 3no2_A 39 CNSVAATKAGEILFSYS-------KGAKMITRDGRELWNIAAP--AGCEMQTARILPDGNALVAWCGH----PSTILEVN 105 (276)
T ss_dssp CCEEEECTTSCEEEECB-------SEEEEECTTSCEEEEEECC--TTCEEEEEEECTTSCEEEEEEST----TEEEEEEC
T ss_pred CcCeEECCCCCEEEeCC-------CCEEEECCCCCEEEEEcCC--CCccccccEECCCCCEEEEecCC----CCEEEEEe
Confidence 45667777888888432 35899999333 3554332 11122333333 66777665431 13678888
Q ss_pred CCCC-cEEEC--CCCCCC--CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc-cEEEcccccccccceEEEEE-CC
Q 005735 468 PAND-EWTSR--PSLNGT--KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG-KWIRTRSMLQKRFALAAAEL-NG 540 (680)
Q Consensus 468 ~~t~-~W~~l--~~lp~~--r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~-~W~~i~~~p~~r~~~s~~~~-~g 540 (680)
+... .|+.- ...+.+ ....+....+|.+++.... ...+.+||++-. .|+.-... . .+++... ++
T Consensus 106 ~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----~~~v~~~d~~G~~~w~~~~~~-~---~~~~~~~~~g 176 (276)
T 3no2_A 106 MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----TSEVREIAPNGQLLNSVKLSG-T---PFSSAFLDNG 176 (276)
T ss_dssp TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECSS-C---CCEEEECTTS
T ss_pred CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-----CCEEEEECCCCCEEEEEECCC-C---ccceeEcCCC
Confidence 7543 23321 111111 1222333446676665432 246889999822 36544321 1 1223333 77
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCc--EEEec-cCCCCCc--eeEEEEE-CCEEEEEe--ccCCC---CCCCeEEEEeC
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHY--WTKIA-NMNRRRG--CHSLAVL-NGKLYALG--GFDGS---AMVPSIEVYDP 609 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~-~~p~~r~--~~s~v~~-~~~IyviG--G~~~~---~~~~~v~~yD~ 609 (680)
.+++.+..+ ..+..+|+.+++ |+.-. ..+..+. ..+++.. ++.+|+.. |+... .....++.+|+
T Consensus 177 ~~~v~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 177 DCLVACGDA-----HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp CEEEECBTT-----SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred CEEEEeCCC-----CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 888876543 368999999664 66543 2222122 2233333 78888876 43210 01234666766
Q ss_pred CCC-cEEE
Q 005735 610 RLG-SWMS 616 (680)
Q Consensus 610 ~t~-~W~~ 616 (680)
+.+ .|+-
T Consensus 252 ~g~~~W~~ 259 (276)
T 3no2_A 252 EGKVVWQL 259 (276)
T ss_dssp TSBEEEEE
T ss_pred CCCEEEEe
Confidence 544 4654
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=93.75 E-value=7.9 Score=40.69 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=58.8
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCC----CCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDG----NSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~----~~~~~~v~vyD~~t~ 471 (680)
+..+|+.-+....... .+.+||+.+++- +..++..... .++.. +..+||..-... ....+.+.+||+.+.
T Consensus 32 ~~~~yv~~~~~~~~~~-~v~v~D~~t~~~--~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 32 GRRSYINLPAHHSAII-QQWVLDAGSGSI--LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCEEEEeCCcccCCcc-EEEEEECCCCeE--EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 4667877641111111 789999988764 3334444333 33332 568998863211 112467889999876
Q ss_pred cEEECCCCC-CCCc----cc-EEEE-ECC-EEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 472 EWTSRPSLN-GTKG----SL-AGAT-IDN-KIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 472 ~W~~l~~lp-~~r~----~~-a~~v-~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
+-...-+++ ..|. .. ..+. -+| .+|+..-. ..+.+.++| .+++-.
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----AGPAVGLVV-QGGSSD 160 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----CCCeEEEEE-CCCCEE
Confidence 432211121 1111 11 2222 244 57776311 135688899 877643
No 190
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.62 E-value=7.1 Score=39.79 Aligned_cols=250 Identities=9% Similarity=0.062 Sum_probs=113.5
Q ss_pred ceEEEcCCCE-EEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC-ccceEEEEECCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSES-IYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA-RSYASAAMLNGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~-Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~-R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
....+.+++. ||+.+..++....-.+|.++..++..+.+...+.. .....++.-++.||+.+... ..+.+|+.
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~ 127 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSG-----GSITVFPI 127 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTT-----TEEEEEEB
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCC-----CEEEEEEe
Confidence 3456666665 55544421111122346667777787776544322 22233333344566655322 35778887
Q ss_pred CCCc-EEEC-------CCCCCC-C--cc--cEEEEE-CCE-EEEEccCCCCcccceEEEEeCCCcc-------EEEc---
Q 005735 469 ANDE-WTSR-------PSLNGT-K--GS--LAGATI-DNK-IFAIGGGNGLECFSDVEMLDLDIGK-------WIRT--- 523 (680)
Q Consensus 469 ~t~~-W~~l-------~~lp~~-r--~~--~a~~v~-~gk-IyV~GG~~~~~~~~~ve~yD~~t~~-------W~~i--- 523 (680)
.++. ...+ ..-+.+ | .. ++++.. +++ +|+.+.. ...+.+|+..... ....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccc
Confidence 5432 1111 001110 1 11 223332 555 7776432 2356777665433 2111
Q ss_pred --ccccccccceEEEEE--CC-EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC---CCCCceeEEEEE--CC-EEEEE
Q 005735 524 --RSMLQKRFALAAAEL--NG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANM---NRRRGCHSLAVL--NG-KLYAL 592 (680)
Q Consensus 524 --~~~p~~r~~~s~~~~--~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~---p~~r~~~s~v~~--~~-~Iyvi 592 (680)
...+.. .....+.+ ++ .+|+.+..+ +.+.+||..++.+..+... +........+.+ ++ .||+.
T Consensus 203 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 203 EAFKVAPG-SGPRHLIFNSDGKFAYLINEIG-----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEECCTT-CCEEEEEECTTSSEEEEEETTT-----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred cceecCCC-CCCeEEEEcCCCCEEEEEcCCC-----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 111111 11222333 44 577765322 3688888888777655432 222122222333 45 46655
Q ss_pred eccCCCCCCCeEEEEeC--CCCcEEEcCCCCCCccceEEEEE-CCEEEEEecccCCCcccceEEE--EcCC-CCeEecc
Q 005735 593 GGFDGSAMVPSIEVYDP--RLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVER--FKEG-QGWEEIN 665 (680)
Q Consensus 593 GG~~~~~~~~~v~~yD~--~t~~W~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~--y~~~-~~W~~v~ 665 (680)
+... .+.+.+|+. .++.+..+...+.......++.- +++.+++++... ..+.+ +++. ..-..+.
T Consensus 277 ~~~~----~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 277 NRLK----ADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ECSS----SCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTCCEEECS
T ss_pred CCCC----CCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCCcEeecc
Confidence 4320 235666665 46777766554432222333333 455444444332 23445 5655 4454443
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.54 E-value=2.7 Score=42.49 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
++.||+.+... ..+++||+.+++........ . .......+ ++++|+.+.... .....+.+||+.++....
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~-~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-K-ANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGDNLQD 126 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEECS-S-SSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSCSCEE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-C-CCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCCEEEE
Confidence 57788877543 36899999988876543111 1 12222233 678888754321 112468899999887653
Q ss_pred c-ccccccccceEEEEE-CCEEEEEcCCC-CCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CC-EEEEEeccCC
Q 005735 523 T-RSMLQKRFALAAAEL-NGVLYATGGYD-GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDG 597 (680)
Q Consensus 523 i-~~~p~~r~~~s~~~~-~g~Lyv~GG~~-~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~-~IyviGG~~~ 597 (680)
+ ...........++.. ++++|+..... .......++++|+.+.+...+... ......++.. ++ .||+....
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~-- 202 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT-- 202 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG--
T ss_pred EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC--
Confidence 2 222111112222222 67888864321 111234789999887776655321 0112233332 44 57776532
Q ss_pred CCCCCeEEEEeCCC
Q 005735 598 SAMVPSIEVYDPRL 611 (680)
Q Consensus 598 ~~~~~~v~~yD~~t 611 (680)
...+++||+.+
T Consensus 203 ---~~~i~~~d~~~ 213 (333)
T 2dg1_A 203 ---ANRLHRIALED 213 (333)
T ss_dssp ---GTEEEEEEECT
T ss_pred ---CCeEEEEEecC
Confidence 24688999853
No 192
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.54 E-value=5.7 Score=44.49 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=72.0
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeC-CCC--cEEECCCCCCC--------CcccEEEEECCEEEEEccCCCCccc
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSP-AND--EWTSRPSLNGT--------KGSLAGATIDNKIFAIGGGNGLECF 507 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~-~t~--~W~~l~~lp~~--------r~~~a~~v~~gkIyV~GG~~~~~~~ 507 (680)
.+.++.++.||+..... ..++.+|. .++ .|+.-...+.. ....+.++.+++||+... .
T Consensus 56 ~~P~v~~g~vyv~~~~~-----~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------d 124 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFP-----NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------N 124 (571)
T ss_dssp SCCEEETTEEEEECSTT-----TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------T
T ss_pred cccEEECCEEEEEeCCC-----CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------C
Confidence 34456799999986521 35899998 765 58765433211 111234567899998743 2
Q ss_pred ceEEEEeCCCc--cEEEc-cccccc-ccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEe
Q 005735 508 SDVEMLDLDIG--KWIRT-RSMLQK-RFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKI 570 (680)
Q Consensus 508 ~~ve~yD~~t~--~W~~i-~~~p~~-r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v 570 (680)
..+..+|..++ .|+.- ...+.. ....+.++.++++|+..+.........++.||..+++ |+.-
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 46889999887 48753 221111 1122334568888875432111123478999998764 7654
No 193
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.54 E-value=5.6 Score=41.26 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=100.4
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+.+.+++.++++++.. ....+.++|+.+.+....... ...-.+++.. ++++++.|+. +.+.+++..+
T Consensus 138 ~v~fSpDg~~la~as~~---~d~~i~iwd~~~~~~~~~~~~--~~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~ 206 (365)
T 4h5i_A 138 LVYISREGTVAAIASSK---VPAIMRIIDPSDLTEKFEIET--RGEVKDLHFSTDGKVVAYITG------SSLEVISTVT 206 (365)
T ss_dssp EEEECTTSSCEEEEESC---SSCEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSSEEEEECS------SCEEEEETTT
T ss_pred EEEEcCCCCEEEEEECC---CCCEEEEeECCCCcEEEEeCC--CCceEEEEEccCCceEEeccc------eeEEEEEecc
Confidence 45566777766554321 224588899988775443221 1112233332 5666666653 2467777777
Q ss_pred CcEEECCCCCCCCcccEE--EEECCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccceEEEEE--CCEEEE
Q 005735 471 DEWTSRPSLNGTKGSLAG--ATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--NGVLYA 544 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~--~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~--~g~Lyv 544 (680)
+................+ ..-+++.++.++.++.. ...+..+|.....+.... .+........++.+ ++++++
T Consensus 207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 665432222111111222 23378877776644321 123556666655543321 11111111222223 788888
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
.|+.++ .|.+||..+.+-...-.-.......+++.. ++++++.|+.+ .+|.++|+.
T Consensus 286 sgs~D~-----~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D-----~tvrvw~ip 342 (365)
T 4h5i_A 286 LASNDN-----SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA-----NTIHIIKLP 342 (365)
T ss_dssp EEETTS-----CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT-----SEEEEEECC
T ss_pred EEcCCC-----EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC-----CeEEEEEcC
Confidence 888764 688999887653321111112222223222 77888888765 357788764
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=93.53 E-value=5.2 Score=40.40 Aligned_cols=236 Identities=13% Similarity=-0.003 Sum_probs=113.8
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCE-EEEEecC--------------
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGE-LYIFGGG-------------- 454 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~-IyV~GG~-------------- 454 (680)
....+.+++..+++....+......++++|..++....+...+. ....+.. +++ |++....
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 34566666655555543221223468999999888777654332 2222222 444 4444321
Q ss_pred ---CCC----CccceEEEEeCCCCcE-EECCCCCCCCcccEEEEE-CCEEEEEccCCCCc---c-cceEEEEeCCCccEE
Q 005735 455 ---DGN----SWHNTVESYSPANDEW-TSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLE---C-FSDVEMLDLDIGKWI 521 (680)
Q Consensus 455 ---~~~----~~~~~v~vyD~~t~~W-~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~---~-~~~ve~yD~~t~~W~ 521 (680)
++. .....++++|..+++. +.+.. + .....+.. ++ +++.+..+... . ...++.+| ++++.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~ 211 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE 211 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE
Confidence 000 1135789999998887 55544 2 22233333 45 55555433221 1 45678888 66766
Q ss_pred EcccccccccceEEEEECCEEEEEcCCCC---CCcCceeEEEeCCCCcEEEeccCCCCCceeE-EEEECCEEEEEeccCC
Q 005735 522 RTRSMLQKRFALAAAELNGVLYATGGYDG---NEYMNSAERFDPREHYWTKIANMNRRRGCHS-LAVLNGKLYALGGFDG 597 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~---~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s-~v~~~~~IyviGG~~~ 597 (680)
.+..- .......-+|+.+++++... ......++++| +++++.+..-.. ..... .+..++ +|+.+..++
T Consensus 212 ~l~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~-~~~~~~~~~sdg-~~~~~~~~~ 283 (347)
T 2gop_A 212 KMFEK----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD-RGVGQAKIKDGK-VYFTLFEEG 283 (347)
T ss_dssp EEEEE----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC-SEEEEEEEETTE-EEEEEEETT
T ss_pred EeccC----cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC-cccCCccEEcCc-EEEEEecCC
Confidence 65432 11112244565443333221 12245789999 666766643221 11121 222244 777665543
Q ss_pred CCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEc
Q 005735 598 SAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFK 656 (680)
Q Consensus 598 ~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~ 656 (680)
...+| ++ +.....+.. ......+++... .+++.+.... ....++.++
T Consensus 284 ---~~~l~-~~--~g~~~~~~~--~~~~v~~~~~s~-~~~~~~~~~~---~~~~l~~~~ 330 (347)
T 2gop_A 284 ---SVNLY-IW--DGEIKPIAK--GRHWIMGFDVDE-IVVYLKETAT---RLRELFTWD 330 (347)
T ss_dssp ---EEEEE-EE--SSSEEEEEC--SSSEEEEEEESS-SEEEEEECSS---SCCEEEEES
T ss_pred ---cEEEE-Ec--CCceEEEec--CCCeEEeeeeeC-cEEEEEcCCC---ChHHheEeC
Confidence 23466 66 344444322 122222232224 5555554332 123677776
No 195
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.45 E-value=4.2 Score=46.22 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=91.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEE-cCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKT-LKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~-l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
+..+++.|+.++ .+.++|..+.. +.. ...+......-..+.+ ++.+++.|+.+ ..+.++|..+..
T Consensus 394 ~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D-----g~v~vwd~~~~~ 463 (694)
T 3dm0_A 394 NADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD-----GELRLWDLAAGV 463 (694)
T ss_dssp CCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred CCCEEEEEeCCC-----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 346788887653 46677765431 100 0011111111122222 66777778765 368889988764
Q ss_pred EEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEccc-ccccccceEEEEE--CC--EEEEE
Q 005735 473 WTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS-MLQKRFALAAAEL--NG--VLYAT 545 (680)
Q Consensus 473 W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~-~p~~r~~~s~~~~--~g--~Lyv~ 545 (680)
-... +......-.++.+ +++.++.|+.++ .+.+||.....-..+.. ....+....++.+ ++ .+++.
T Consensus 464 ~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 464 STRR--FVGHTKDVLSVAFSLDNRQIVSASRDR-----TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp EEEE--EECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred ceeE--EeCCCCCEEEEEEeCCCCEEEEEeCCC-----EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 3221 1111111112222 566666666553 45677765443222211 1111122223333 22 45666
Q ss_pred cCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 546 GGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 546 GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
|+.++ .+.+||..+......-. .+.....+++.. ++.+++.|+.++ .|.+||+.+..-
T Consensus 537 ~s~d~-----~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~~ 595 (694)
T 3dm0_A 537 ASWDK-----TVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDG-----VVLLWDLAEGKK 595 (694)
T ss_dssp EETTS-----CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS-----BCEEEETTTTEE
T ss_pred EeCCC-----eEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCce
Confidence 66654 68889988765433211 111122233332 677788887653 477889877653
No 196
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=93.35 E-value=7.1 Score=44.71 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=73.4
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCC--------CcccEEEEECCEEEEEccCCCCcccc
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGT--------KGSLAGATIDNKIFAIGGGNGLECFS 508 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~--------r~~~a~~v~~gkIyV~GG~~~~~~~~ 508 (680)
.+.++.++.||+.... ..++.+|..++ .|+.-...+.. ....+.++.+++||+... ..
T Consensus 71 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg 138 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DG 138 (677)
T ss_dssp CCCEEETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TS
T ss_pred eCCEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CC
Confidence 3445679999998652 46899999876 48765443211 112244567889998632 24
Q ss_pred eEEEEeCCCcc--EEEccc--ccc-cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEe
Q 005735 509 DVEMLDLDIGK--WIRTRS--MLQ-KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKI 570 (680)
Q Consensus 509 ~ve~yD~~t~~--W~~i~~--~p~-~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v 570 (680)
.+..+|..+++ |+.-.. ... .....+.++.++++|+..+.........++.||..+++ |+.-
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 68899998875 876422 111 11222334568888875432221234578999998875 7764
No 197
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=93.28 E-value=6.8 Score=38.54 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=76.2
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
......+++ ++.+| .+ +.+.++|..+++....-.+......-..+.+ +++.++.|+.++ .+.++|.
T Consensus 29 ~~l~WS~~~-~lAvg-~D-----~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~ 96 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LD-----NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDV 96 (318)
T ss_dssp BCEEECTTS-EEEEE-ET-----TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----EEEEEET
T ss_pred eEEEECCCC-EEEEE-eC-----CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC-----cEEEeec
Confidence 345555566 44444 32 4689999999876654333333222222333 667777887663 6888998
Q ss_pred CCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEccccc-ccccceEEEEECCEEEEEcC
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML-QKRFALAAAELNGVLYATGG 547 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p-~~r~~~s~~~~~g~Lyv~GG 547 (680)
.+++-..... .......+...++.+.+.|+.++ .+..++..+.......... ...........++..++.|+
T Consensus 97 ~~~~~~~~~~--~h~~~~~~~~~~~~~l~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 97 QQQKRLRNMT--SHSARVGSLSWNSYILSSGSRSG-----HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp TTTEEEEEEE--CCSSCEEEEEEETTEEEEEETTS-----EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceeEEEec--CccceEEEeecCCCEEEEEecCC-----ceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence 8876432211 11122233444556666665432 2334444443322111001 11111111122556666666
Q ss_pred CCCCCcCceeEEEeCCCCc
Q 005735 548 YDGNEYMNSAERFDPREHY 566 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~ 566 (680)
.++ .+.+||..+.+
T Consensus 170 ~d~-----~i~iwd~~~~~ 183 (318)
T 4ggc_A 170 NDN-----LVNVWPSAPGE 183 (318)
T ss_dssp TTS-----CEEEEESSCBT
T ss_pred cCc-----ceeEEECCCCc
Confidence 654 57788887643
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=93.26 E-value=10 Score=40.38 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=121.4
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
....++.+++.||+....+ ..+.++|+.++....+.... ...+ ++.. ++.||+...... ..+++++
T Consensus 133 P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d 200 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGT----HTVYVYM 200 (409)
T ss_dssp EEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTT----CEEEEEE
T ss_pred ceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCC----ceEEEEE
Confidence 3456666789999987632 46899999988766653321 1122 3322 456776654321 1688998
Q ss_pred CCCCc-EEECCCCC--CCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcc---cccccccc-e-EEEE
Q 005735 468 PANDE-WTSRPSLN--GTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR---SMLQKRFA-L-AAAE 537 (680)
Q Consensus 468 ~~t~~-W~~l~~lp--~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~---~~p~~r~~-~-s~~~ 537 (680)
+.++. ...+..+. ....-++.++. ++.||+... ...+..||+.+.....+. ........ . .++.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 87543 22331111 11111223333 678999532 246889999987755441 11111222 1 4455
Q ss_pred E--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC-C------------CCceeEEEEE-CCEEEEEec-cCCCCC
Q 005735 538 L--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-R------------RRGCHSLAVL-NGKLYALGG-FDGSAM 600 (680)
Q Consensus 538 ~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p-~------------~r~~~s~v~~-~~~IyviGG-~~~~~~ 600 (680)
. ++.||+.... ...|++||+... ...+.... . -.....++.. ++.||+... .
T Consensus 275 ~p~~g~lyv~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~----- 343 (409)
T 3hrp_A 275 YFVDSNFYMSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK----- 343 (409)
T ss_dssp ETTTTEEEEEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----
T ss_pred eCCCCEEEEEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----
Confidence 4 5899997532 247899988654 33332111 0 0112233333 567998864 3
Q ss_pred CCeEEEEeCCCCcEEEcCCCCC-------------CccceEEEEE-CCEEEEEecc
Q 005735 601 VPSIEVYDPRLGSWMSGEPMKL-------------SRGYLGAAVV-KEAIYVIGGV 642 (680)
Q Consensus 601 ~~~v~~yD~~t~~W~~v~~lp~-------------~R~~~s~v~~-~~~lyV~GG~ 642 (680)
...|.+||+.+.....+...+. -....++++- ++.|||....
T Consensus 344 ~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 344 GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 3578999976776655432210 1123344444 4788887643
No 199
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.19 E-value=0.78 Score=48.93 Aligned_cols=194 Identities=10% Similarity=0.102 Sum_probs=90.9
Q ss_pred ceEEEcCC-CEEEEEecCCCCcccCeEEEEeCCCC--------eEEEcCCCCCC-ccceEEEEE-CCE-EEEEecCCCCC
Q 005735 391 DELHLDPS-ESIYLVGGCDGDSWLSTLELYLPSCD--------VIKTLKPMSSA-RSYASAAML-NGE-LYIFGGGDGNS 458 (680)
Q Consensus 391 ~~~~v~~~-~~Iyv~GG~~~~~~~~~v~~yd~~t~--------~W~~l~~mp~~-R~~~s~v~~-~~~-IyV~GG~~~~~ 458 (680)
.+..+.+. +.+++.|+.++ .+.+||..+. ....+..+... ....+++.. ++. +++.|+.++
T Consensus 132 ~~l~~~p~~~~~lat~~~dg-----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-- 204 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSS-----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH-- 204 (430)
T ss_dssp SEEEEETTEEEEEEEECSSS-----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS--
T ss_pred EEEEECCCCCcEEEEECCCC-----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC--
Confidence 34555554 67777777643 4777877642 11111111111 111222222 333 677776553
Q ss_pred ccceEEEEeCCCC---cEEE--CCCCCCCCcccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCcc-EEEccccccc
Q 005735 459 WHNTVESYSPAND---EWTS--RPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGK-WIRTRSMLQK 529 (680)
Q Consensus 459 ~~~~v~vyD~~t~---~W~~--l~~lp~~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~i~~~p~~ 529 (680)
.+.+||..+. .+.. ...+.........+.+ ++.+++.|+.+ ..+.+||+.+.. ...+..+...
T Consensus 205 ---~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 205 ---TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp ---CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCSCSSSCSEEEECC
T ss_pred ---eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCCCCCcceeEeecC
Confidence 5788888762 1211 1111111111122222 45677776644 457789988652 1111111111
Q ss_pred ccceEEEEE---CCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCC
Q 005735 530 RFALAAAEL---NGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 530 r~~~s~~~~---~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~ 602 (680)
.....++.+ +..+++.|+.++ .+.+||..+.. -..+.. ......++... +..+++.|+.++
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~----- 344 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDR----- 344 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTS-----
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCC-----
Confidence 112222333 234788887764 68899987632 111111 11112222222 335777777653
Q ss_pred eEEEEeCCC
Q 005735 603 SIEVYDPRL 611 (680)
Q Consensus 603 ~v~~yD~~t 611 (680)
.+.+||+..
T Consensus 345 ~i~iwd~~~ 353 (430)
T 2xyi_A 345 RLHVWDLSK 353 (430)
T ss_dssp CCEEEEGGG
T ss_pred cEEEEeCCC
Confidence 467888765
No 200
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=93.01 E-value=2 Score=48.27 Aligned_cols=213 Identities=11% Similarity=0.025 Sum_probs=114.2
Q ss_pred ceEEEcCCCEEEEEecCCC-----CcccCeEEEEeCCC------CeEEEcC-CCCCCccceEEEE-ECCEEEEEecCCC-
Q 005735 391 DELHLDPSESIYLVGGCDG-----DSWLSTLELYLPSC------DVIKTLK-PMSSARSYASAAM-LNGELYIFGGGDG- 456 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~-----~~~~~~v~~yd~~t------~~W~~l~-~mp~~R~~~s~v~-~~~~IyV~GG~~~- 456 (680)
....+.++++.++++..+. ......++++|..+ +..+.+. .-. ......+. -+++.+++.....
T Consensus 133 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 133 ADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS--SEECCCEECTTSSEEEEEEECTT
T ss_pred cCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC--CcccCceECCCCCEEEEEECCCC
Confidence 3455666666555554321 12335799999988 6666664 221 11111111 2555444444332
Q ss_pred -CC-ccceEEEEeCC-CC---cEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEccccccc
Q 005735 457 -NS-WHNTVESYSPA-ND---EWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK 529 (680)
Q Consensus 457 -~~-~~~~v~vyD~~-t~---~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~ 529 (680)
.. ....++++|.. ++ ....+..-. .......+.. +|++|+.+..++ ...++.+|+.++++..+......
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~ 286 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEE 286 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSB
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeeccccccc
Confidence 11 12579999998 56 343332110 1111122222 778777765443 24789999989998877543211
Q ss_pred c----c---ceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEE-EEECCEEEEEeccCCCCC
Q 005735 530 R----F---ALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSL-AVLNGKLYALGGFDGSAM 600 (680)
Q Consensus 530 r----~---~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~-v~~~~~IyviGG~~~~~~ 600 (680)
. + ....+.. ++++++.+.. + ...++.+|..++..+.+..-. .....+ ..-++.+++..+... .
T Consensus 287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~d~~~~~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~--~ 358 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANGLIAVVHGK-G---AAVLGILDPESGELVDAAGPW--TEWAATLTVSGTRAVGVAASPR--T 358 (662)
T ss_dssp SSCCCCSTTCCSEEECTTSCEEEEEBS-S---SCEEEEEETTTTEEEECCSSC--CEEEEEEEEETTEEEEEEEETT--E
T ss_pred ccCccccccCceEeEeCCCEEEEEEEc-C---ccEEEEEECCCCcEEEecCCC--CeEEEEEecCCCEEEEEEcCCC--C
Confidence 1 1 1123333 6777776654 2 347888899888877664321 112223 334666666654321 2
Q ss_pred CCeEEEEeCCCCcEEEc
Q 005735 601 VPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 601 ~~~v~~yD~~t~~W~~v 617 (680)
...++.+|+.++....+
T Consensus 359 ~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 359 AYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCCceEEe
Confidence 34688899988887766
No 201
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.96 E-value=7.2 Score=39.13 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=41.0
Q ss_pred eEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEc-CCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEe
Q 005735 392 ELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTL-KPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 392 ~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l-~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
+..+.+ ++.+++.|+.++ .+.+||..++..... ..+.........+.+ ++..++.|+.++ .+.+||
T Consensus 120 ~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d 189 (366)
T 3k26_A 120 ELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWR 189 (366)
T ss_dssp EEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred EEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC-----CEEEEE
Confidence 344555 667788887643 588899988764433 222222222223333 466677777653 578888
Q ss_pred CCCC
Q 005735 468 PAND 471 (680)
Q Consensus 468 ~~t~ 471 (680)
..+.
T Consensus 190 ~~~~ 193 (366)
T 3k26_A 190 INSK 193 (366)
T ss_dssp SCSH
T ss_pred CCCC
Confidence 8765
No 202
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=92.92 E-value=1 Score=45.70 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=59.0
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCccE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIGKW 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~~W 520 (680)
++..++.|+.+ ..+.+||..++....+..+..-...-.++.+ ++.+++.|+.++ .+.+||+.++.|
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~-----~v~iWd~~~~~~ 93 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR-----KVIIWREENGTW 93 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS-----CEEEECCSSSCC
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC-----EEEEEECCCCcc
Confidence 46667777765 3577888776654322222211111122222 256677776553 477889988877
Q ss_pred EEcccccccccceEEEEE--C--CEEEEEcCCCCCCcCceeEEEeCCCC-cEEEe
Q 005735 521 IRTRSMLQKRFALAAAEL--N--GVLYATGGYDGNEYMNSAERFDPREH-YWTKI 570 (680)
Q Consensus 521 ~~i~~~p~~r~~~s~~~~--~--g~Lyv~GG~~~~~~~~~v~~yD~~t~-~W~~v 570 (680)
..+..+........++.+ + +.+++.|+.++ .+.+||..+. .|...
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVK 143 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEEC
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCccee
Confidence 554332211111122222 2 56777777664 5677777664 57543
No 203
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=92.82 E-value=0.079 Score=48.95 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=68.2
Q ss_pred EEeecCCChHHHhhhhcccCCCcCccchhccCCCCcEEEE-----ecC--CCeEeeEEEeccCCCccccCCCCCCCC---
Q 005735 22 IFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLF-----NYT--DRKLHGIFEAASPGMMNINPYGWTDGS--- 91 (680)
Q Consensus 22 if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~-----~~~--~~~l~g~~~a~s~g~~~~~~~a~~~~~--- 91 (680)
|+..+...-+.+.+..++|.+..+..+.+.+|+|..+|.| -=. .+..-||.|.++. -..+|.+|...+
T Consensus 8 L~~se~~~~~~~~~~g~wGVn~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e--~y~D~t~~dp~~~y~ 85 (147)
T 2p5d_A 8 LCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSE--VYKDSSKIFKPTPRN 85 (147)
T ss_dssp EEEECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSC--CEECCCCCSCCBTTB
T ss_pred eeecCHHHHHHHHHcCeeecCHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEecc--cccCCcccCcCccCc
Confidence 3444444566677788899999999999999999999999 322 4789999999994 467888886211
Q ss_pred CCCCCCceEEEEEeee-ecCCCCCcchh
Q 005735 92 ERTSYPAQVQIRVRMQ-CQPLNEEKFKP 118 (680)
Q Consensus 92 ~~~~~paqv~~~~~~~-~~pl~e~~~~~ 118 (680)
...++|.-|.++.... ..|++=.++|+
T Consensus 86 ~~~~~w~~VdV~~v~~~~~~v~L~~Lk~ 113 (147)
T 2p5d_A 86 PNEKFPYRVKLKEIKVFEPPINFKELIP 113 (147)
T ss_dssp TTCCCCEEEEEEEEEEEEEEEEHHHHGG
T ss_pred CCCCCceEEEEEEEeecCCccCHHHHHh
Confidence 1467888888875543 35666555553
No 204
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.75 E-value=4.7 Score=39.80 Aligned_cols=187 Identities=14% Similarity=0.201 Sum_probs=91.8
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCC--CcEEECCCCCCCCcccEEEEE----CCEEEEEccCCCCcccceEEEEeCCCc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPAN--DEWTSRPSLNGTKGSLAGATI----DNKIFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t--~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
++.+++.|+.++ .+.+||..+ ..++....+........++.+ ++.+++.|+.++ .+.+||+.++
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~vwd~~~~ 91 (351)
T 3f3f_A 22 YGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK-----TVKLWEEDPD 91 (351)
T ss_dssp SSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEECTT
T ss_pred CCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC-----eEEEEecCCC
Confidence 456666676543 566777664 334433222222222223333 367777777653 4667887764
Q ss_pred -------cEEEcccccccccceEEEEE--C--CEEEEEcCCCCCCcCceeEEEeCCCCc----EEEe---ccC---C--C
Q 005735 519 -------KWIRTRSMLQKRFALAAAEL--N--GVLYATGGYDGNEYMNSAERFDPREHY----WTKI---ANM---N--R 575 (680)
Q Consensus 519 -------~W~~i~~~p~~r~~~s~~~~--~--g~Lyv~GG~~~~~~~~~v~~yD~~t~~----W~~v---~~~---p--~ 575 (680)
.|..+..+.........+.+ + +.+++.|+.++ .+.+||..+.. |..- ..+ + .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG-----ILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC-----EEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC-----cEEEecCCChHHhccccccccccccccccCCc
Confidence 33433333222222222333 2 66777777654 68888877643 3211 111 1 1
Q ss_pred CCceeEEEEE----CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--CC----EEEEEecccCC
Q 005735 576 RRGCHSLAVL----NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--KE----AIYVIGGVKNG 645 (680)
Q Consensus 576 ~r~~~s~v~~----~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~----~lyV~GG~~~~ 645 (680)
.....++... ++.+++.|+.++ .+..++........+..+.........+.+ ++ .+++.|+.++.
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred ccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 1111122221 256777776542 345556666666555444433333333333 33 78888876643
Q ss_pred CcccceEEEEcC
Q 005735 646 SEIVDTVERFKE 657 (680)
Q Consensus 646 ~~~~~~ve~y~~ 657 (680)
+.+|+.
T Consensus 242 ------i~iwd~ 247 (351)
T 3f3f_A 242 ------IRIFKI 247 (351)
T ss_dssp ------EEEEEE
T ss_pred ------EEEEeC
Confidence 556654
No 205
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.74 E-value=8 Score=42.19 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=96.5
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEc--CCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc---
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTL--KPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE--- 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l--~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~--- 472 (680)
++.+|+|-| +..|+||..+++.... +.++ . .-++....+++|+|-| +..+.||..+++
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~ 220 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVPP 220 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTCCCCT
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------CEEEEEcCccCcccC
Confidence 677888888 3589999998876543 2233 2 3455556899999988 357888876543
Q ss_pred ---------EEECCCCCC------------------CCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEE--
Q 005735 473 ---------WTSRPSLNG------------------TKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWI-- 521 (680)
Q Consensus 473 ---------W~~l~~lp~------------------~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~-- 521 (680)
|..++.... +....-+++ .+|++|.|-|. ..+.+|.....+.
T Consensus 221 gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~-------~yWR~~~~~~~~~p~ 293 (460)
T 1qhu_A 221 GYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS-------HYWRLDTNRDGWHSW 293 (460)
T ss_dssp TCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT-------EEEECTTGGGCCCCE
T ss_pred CCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC-------EEEEEecCCCCcCcc
Confidence 222221100 011222333 36889999763 3444444332221
Q ss_pred Ec----ccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc--------CCCCCc----eeEEEEE
Q 005735 522 RT----RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN--------MNRRRG----CHSLAVL 585 (680)
Q Consensus 522 ~i----~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~--------~p~~r~----~~s~v~~ 585 (680)
.+ +.+|.. --++...++++|+|=| +.+|+|+..++ .+.++. +..+.. .--++..
T Consensus 294 ~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~ 363 (460)
T 1qhu_A 294 PIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFV 363 (460)
T ss_dssp EGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEEC
T ss_pred chhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEE
Confidence 11 233332 3344456899999966 36788886431 222211 221111 1222222
Q ss_pred ---CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 586 ---NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 586 ---~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
++++|++-| +..|.||...
T Consensus 364 ~~~~~ktyfFkG-------~~ywryd~~~ 385 (460)
T 1qhu_A 364 CPGSSRLHIMAG-------RRLWWLDLKS 385 (460)
T ss_dssp CTTCCEEEEEET-------TEEEEEEGGG
T ss_pred eCCCCEEEEEEC-------CEEEEEECCC
Confidence 578999977 4678998764
No 206
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=92.70 E-value=2.7 Score=46.56 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=111.7
Q ss_pred EEEEEecCCCCcccCeEEEEeC--CCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 400 SIYLVGGCDGDSWLSTLELYLP--SCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 400 ~Iyv~GG~~~~~~~~~v~~yd~--~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
.++..+...+......++..+. .... ..+......+ ...... ++.++++.+..+ .+.+||..+++-+.+
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~~-----~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATED-----RVALYALDGGGLREL 147 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECSS-----CEEEEEEETTEEEEE
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCCC-----CceEEEccCCcEEEe
Confidence 5555444322222345777777 4333 2443333222 223333 445555554432 244778888876665
Q ss_pred CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcC
Q 005735 477 PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYM 554 (680)
Q Consensus 477 ~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~ 554 (680)
...+. ...+..-+|+.+++++.+... ...++.+|+.++++..+..-.... ....+ +|+.++.+..++ .
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~~~~~~---~~~~~SpDG~~l~~~~~~~---~ 217 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFDSGEGSF---SSASISPGMKVTAGLETAR---E 217 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEECCSSCEE---EEEEECTTSCEEEEEECSS---C
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEeecCCCcc---ccceECCCCCEEEEccCCC---e
Confidence 43322 223333477766655433211 245899999999887664322211 12222 555444433322 2
Q ss_pred ceeEEEeCCCCcEEEeccCCCCCceeE-----E--EEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccce
Q 005735 555 NSAERFDPREHYWTKIANMNRRRGCHS-----L--AVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYL 627 (680)
Q Consensus 555 ~~v~~yD~~t~~W~~v~~~p~~r~~~s-----~--v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~ 627 (680)
..++++|+.+++.+.+........... . ..-++++++.+..++ .+.+|+. ++... .+.. ...
T Consensus 218 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-----~~~l~~~--g~~~~---~~~~-~v~ 286 (582)
T 3o4h_A 218 ARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG-----RSAVFID--GERVE---APQG-NHG 286 (582)
T ss_dssp EEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT-----EEEEEET--TEEEC---CCSS-EEE
T ss_pred eEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC-----cEEEEEE--CCeec---cCCC-ceE
Confidence 479999999988873322111100000 0 122567777665442 4677777 44332 1221 222
Q ss_pred EEEEECCEEEEEecccCCCcccceEEEEcCCC
Q 005735 628 GAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQ 659 (680)
Q Consensus 628 s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~~ 659 (680)
+++.-++++++.++... ....++.++...
T Consensus 287 ~~~~sdg~~l~~~s~~~---~p~~l~~~d~~~ 315 (582)
T 3o4h_A 287 RVVLWRGKLVTSHTSLS---TPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEEEETT---EEEEEEEETTCC
T ss_pred EEEecCCEEEEEEcCCC---CCCeEEEEcCCC
Confidence 33333788777765432 224566666543
No 207
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=92.70 E-value=2.5 Score=42.84 Aligned_cols=185 Identities=8% Similarity=-0.052 Sum_probs=95.7
Q ss_pred ccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEE
Q 005735 412 WLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT 490 (680)
Q Consensus 412 ~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v 490 (680)
....++++|..++....+ ......... +++.+++...........++++|..+++...+...+. .....
T Consensus 41 ~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----~~~~~ 110 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----IRSLE 110 (347)
T ss_dssp EEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE----EEEEE
T ss_pred ccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC----cccee
Confidence 356789999988876665 111222222 4544444332221123468999998887766544332 22222
Q ss_pred E--CCEEEEEccCC------------------CC----cccceEEEEeCCCccE-EEcccccccccceEEEEECCEEEEE
Q 005735 491 I--DNKIFAIGGGN------------------GL----ECFSDVEMLDLDIGKW-IRTRSMLQKRFALAAAELNGVLYAT 545 (680)
Q Consensus 491 ~--~gkIyV~GG~~------------------~~----~~~~~ve~yD~~t~~W-~~i~~~p~~r~~~s~~~~~g~Lyv~ 545 (680)
+ +++.+++.... +. .....++.+|+.+++. ..+.. + .....+...+.+++.
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~ 186 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVN 186 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEE
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEE
Confidence 3 55533333211 00 1135688999998886 55544 2 222333333336555
Q ss_pred cCCCCCC---c-CceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCC---CCCCCeEEEEeCCCCcEEEcC
Q 005735 546 GGYDGNE---Y-MNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDG---SAMVPSIEVYDPRLGSWMSGE 618 (680)
Q Consensus 546 GG~~~~~---~-~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~---~~~~~~v~~yD~~t~~W~~v~ 618 (680)
+..+... . ...++.+| +++++.+..- ..... ..-+++.+++.+... ......++++| ++.+..+.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~-~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---VSFYA-VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---ESEEE-EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EecccccccccccccEEEeC--CCceEEeccC---cceee-ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 5433221 2 45788898 7777776542 11222 244665444444322 12345799999 66676654
No 208
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.65 E-value=2 Score=45.66 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=50.8
Q ss_pred EEEEccCCCCcccceEEEEeCCCc---cEEE--cccccccccceEEEEE---CCEEEEEcCCCCCCcCceeEEEeCCCCc
Q 005735 495 IFAIGGGNGLECFSDVEMLDLDIG---KWIR--TRSMLQKRFALAAAEL---NGVLYATGGYDGNEYMNSAERFDPREHY 566 (680)
Q Consensus 495 IyV~GG~~~~~~~~~ve~yD~~t~---~W~~--i~~~p~~r~~~s~~~~---~g~Lyv~GG~~~~~~~~~v~~yD~~t~~ 566 (680)
+++.|+.++ .+.+||+.+. .+.. ...+.........+.+ ++.+++.|+.++ .+.+||..+..
T Consensus 196 ~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-----~i~i~d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDDH-----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-----KLMIWDTRNNN 265 (430)
T ss_dssp EEEEECTTS-----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCSC
T ss_pred eEEEEeCCC-----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-----eEEEEECCCCC
Confidence 667766543 4778888762 2221 1111111111222222 456777776553 68899988652
Q ss_pred -EEEeccC-CCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 567 -WTKIANM-NRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 567 -W~~v~~~-p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
...+..+ .......+++.. +..+++.|+.+ ..|.+||.++
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~ 309 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRN 309 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTC
T ss_pred CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCC
Confidence 1111111 111112222222 33478888765 3588999876
No 209
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.65 E-value=17 Score=41.42 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=69.1
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCC--------ccceEEEEECCEEEEEecCCCCCccceEEEEe
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSA--------RSYASAAMLNGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~--------R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
++.||+.... ..++.+|..+++ |+.-...+.. ....+.++.+++||+... + ..++.+|
T Consensus 66 ~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d-----g~l~alD 133 (668)
T 1kv9_A 66 DGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-D-----GRLIALD 133 (668)
T ss_dssp TTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-T-----SEEEEEE
T ss_pred CCEEEEECCC------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-C-----CEEEEEE
Confidence 7888887652 468999998774 8765433211 012334567889987542 1 3689999
Q ss_pred CCCCc--EEECCCCCC--CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEE
Q 005735 468 PANDE--WTSRPSLNG--TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIR 522 (680)
Q Consensus 468 ~~t~~--W~~l~~lp~--~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~ 522 (680)
..|++ |+.-..-+. .....+-++.+++||+..+.........+..||+.+++ |+.
T Consensus 134 ~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 134 AKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp TTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 98774 876432111 11223345678998885433222234578999999875 865
No 210
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=92.32 E-value=17 Score=40.55 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=99.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.+..+.+++.+++.|+.++ .+.++|..+........+.........+.+ +++.++.+|.... ....++.+|.
T Consensus 63 ~~~~~spdg~~lasg~~d~-----~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd~ 136 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHG-----NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFDT 136 (611)
T ss_dssp EEEEECTTSSEEEEEETTS-----EEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETTT
T ss_pred EEEEECCCCcEEEEEeCCC-----CEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEeeC
Confidence 3456677888888888653 577788754321111111111111122222 5566666654321 1235666664
Q ss_pred CCCcEEECCCCCCCCcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLY 543 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Ly 543 (680)
.+. ...+......-.++.+ ++. .++.|+.++ .+..||..+.+... .+........++.+ +++++
T Consensus 137 ~~~----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~-----~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 137 GTS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDN-----TVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp CCB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTS-----CEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEE
T ss_pred CCC----cceecCCCCCceEEEECCCCCeEEEEEeCCC-----eEEEEECCCCeEee--eeccccCceEEEEECCCCCEE
Confidence 321 1222221222222223 333 566666553 46678876654322 22211111222233 67788
Q ss_pred EEcCCCCCCcCceeEEEeCCCCcEEEec-cC-----CCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 544 ATGGYDGNEYMNSAERFDPREHYWTKIA-NM-----NRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~t~~W~~v~-~~-----p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
+.|+.++ .+.+||..+++....- .. .......+++.. +++.++.|+.+ ..+.++|+.+.....
T Consensus 206 as~s~D~-----~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 206 ASTGGDG-----TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEK 275 (611)
T ss_dssp EEEETTS-----CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEE
T ss_pred EEEECCC-----cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceee
Confidence 8888764 6788998777654332 11 122222233332 66777777765 468899998876654
No 211
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.25 E-value=9.1 Score=37.41 Aligned_cols=191 Identities=13% Similarity=-0.034 Sum_probs=104.2
Q ss_pred ceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEE
Q 005735 438 YASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEML 513 (680)
Q Consensus 438 ~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~y 513 (680)
.++++.. ++.||+..... ..+.+||+.+..-..+..... ..-+..++- ++.||+.... .+.+.++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~-----~~~I~~~ 106 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ-----LDRIEVA 106 (267)
T ss_dssp EEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT-----TTEEEEE
T ss_pred EEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC-----CCEEEEE
Confidence 3455554 57899876532 468999987654332211111 112233332 5789998542 3568889
Q ss_pred eCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEE
Q 005735 514 DLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKL 589 (680)
Q Consensus 514 D~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~I 589 (680)
|+....-..+..... .....+++. +++||+..... ....++++++....-+.+..... .....++.- ++.|
T Consensus 107 ~~~g~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~l 181 (267)
T 1npe_A 107 KMDGTQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQL 181 (267)
T ss_dssp ETTSCSCEEEECSSC-SSEEEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEE
T ss_pred EcCCCCEEEEEECCC-CCccEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEE
Confidence 987544333221111 112233343 68999975321 12468888876544333322111 223344443 5789
Q ss_pred EEEeccCCCCCCCeEEEEeCCCCcEEEc-CCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 590 YALGGFDGSAMVPSIEVYDPRLGSWMSG-EPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 590 yviGG~~~~~~~~~v~~yD~~t~~W~~v-~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
|+.... .+.|.+||+....-..+ ..+. ...+++..++.||+.-... ..|.++++.
T Consensus 182 yv~d~~-----~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d~~~lyva~~~~------~~v~~~d~~ 237 (267)
T 1npe_A 182 CWVDAG-----THRAECLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYTDWKT------NSVIAMDLA 237 (267)
T ss_dssp EEEETT-----TTEEEEEETTEEEEEEEEECCC---SEEEEEEETTEEEEEETTT------TEEEEEETT
T ss_pred EEEECC-----CCEEEEEecCCCceEEEecCCC---CceEEEEeCCEEEEEECCC------CeEEEEeCC
Confidence 988643 35799999976432222 2222 2245666689999975332 357888875
No 212
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.24 E-value=11 Score=38.25 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=74.8
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEE--
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWI-- 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~-- 521 (680)
++.+++.|+.++ .+.+||..+.+-...........-.+++.. ++.+++.|+.++ .+.+||+.+++-.
T Consensus 138 ~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 138 NTEYFIWADNRG-----TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASS 207 (343)
T ss_dssp -CCEEEEEETTC-----CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTTSCCE
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCCCCcc
Confidence 456777777653 588899888765433221211112222222 677888887553 5778999887632
Q ss_pred EcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEE-EeccCCCCCce-e-EEEEE--CCEEEEEec
Q 005735 522 RTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWT-KIANMNRRRGC-H-SLAVL--NGKLYALGG 594 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~-~v~~~p~~r~~-~-s~v~~--~~~IyviGG 594 (680)
.+.. . .......+.+ ++..++.|+ ++ .+.+||+.+..-. .+..+...... . .++.+ +++.++.|+
T Consensus 208 ~~~~-~-h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 208 RFPV-D-EEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp ECCC-C-TTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred EEec-c-CCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 1111 0 1111122223 566666666 32 6889998775421 11111000010 0 12233 456666644
Q ss_pred c-CCCCCCCeEEEEeCCCCcEEE
Q 005735 595 F-DGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 595 ~-~~~~~~~~v~~yD~~t~~W~~ 616 (680)
. ++. -.+|.|+...+.|..
T Consensus 280 ~~d~~---i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 280 NESNS---LTIYKFDKKTKNWTK 299 (343)
T ss_dssp TTTTE---EEEEEECTTTCSEEE
T ss_pred CCCCc---EEEEEEcccccceEe
Confidence 3 221 234444556778987
No 213
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=92.19 E-value=9.6 Score=39.55 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=44.5
Q ss_pred CCEEEEEeccCCC-----CCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 586 NGKLYALGGFDGS-----AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 586 ~~~IyviGG~~~~-----~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
++++|+....++. .....++++|+.+.+ .+..++.+. ..+++.- +..||+.++ ++|.+||.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~--------~~v~v~D~- 332 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG--------GNVNVYDI- 332 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS--------SCEEEEEC-
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC--------CeEEEEEC-
Confidence 4789987542211 124579999998764 444455545 5555554 445665542 46888987
Q ss_pred CCe--EecccC-CCC
Q 005735 659 QGW--EEINSR-AIG 670 (680)
Q Consensus 659 ~~W--~~v~~~-p~~ 670 (680)
.++ +.+... ++|
T Consensus 333 ~t~~l~~~~~i~~~G 347 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAA 347 (361)
T ss_dssp SSSSCEEEEEETTSC
T ss_pred CCCcceeeEEeccCC
Confidence 456 777774 565
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.13 E-value=20 Score=41.02 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=69.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCC--------ccceEEEEECCEEEEEecCCCCCccceEEEEe
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSA--------RSYASAAMLNGELYIFGGGDGNSWHNTVESYS 467 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~--------R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD 467 (680)
++.||+.+.. ..++.+|..+++ |+.-...+.. ....+.++.++.||+... + ..++.+|
T Consensus 70 ~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-d-----g~l~AlD 137 (689)
T 1yiq_A 70 DGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-D-----GRLEAID 137 (689)
T ss_dssp TTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T-----SEEEEEE
T ss_pred CCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-C-----CEEEEEE
Confidence 8888887642 458999998774 8765433211 112234567889988543 1 3689999
Q ss_pred CCCCc--EEECCC-CCC--CCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEc
Q 005735 468 PANDE--WTSRPS-LNG--TKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRT 523 (680)
Q Consensus 468 ~~t~~--W~~l~~-lp~--~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i 523 (680)
..|++ |+.-.. -+. .....+-++.+++||+-.+.........+..||..+++ |+.-
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 138 AKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 98774 876432 111 11223345679999885432222234578999999876 8753
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.11 E-value=4.6 Score=40.02 Aligned_cols=195 Identities=9% Similarity=0.023 Sum_probs=99.5
Q ss_pred ceEEEcCC-CEEEEEecCCCCcccCeEEEEeCCCCeEEEc-CCCCCC---ccceEEEEE-CCEEEEEecCC---------
Q 005735 391 DELHLDPS-ESIYLVGGCDGDSWLSTLELYLPSCDVIKTL-KPMSSA---RSYASAAML-NGELYIFGGGD--------- 455 (680)
Q Consensus 391 ~~~~v~~~-~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l-~~mp~~---R~~~s~v~~-~~~IyV~GG~~--------- 455 (680)
....+.++ +.+|+.... ..+++||+. ++...+ ...... .....++.. ++.+|+.....
T Consensus 74 ~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 74 AGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred ceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 34556667 888887642 258999998 777665 322211 223344433 67888865432
Q ss_pred -CCCccceEEEEeCCCCcEEECCC-CCCCCcccEEEEE-----CC-EEEEEccCCCCcccceEEEEeCC-CccEEE---c
Q 005735 456 -GNSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGATI-----DN-KIFAIGGGNGLECFSDVEMLDLD-IGKWIR---T 523 (680)
Q Consensus 456 -~~~~~~~v~vyD~~t~~W~~l~~-lp~~r~~~a~~v~-----~g-kIyV~GG~~~~~~~~~ve~yD~~-t~~W~~---i 523 (680)
.......+++||+. .+...... +.. ....+.. ++ .+|+.... ...+.+||+. ++++.. .
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~ 217 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQF---PNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESS---EEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEE
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCC---cceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEE
Confidence 11123578999987 55543311 111 1222333 34 47776432 2467888876 444321 1
Q ss_pred ccccccc-cceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCC
Q 005735 524 RSMLQKR-FALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGS 598 (680)
Q Consensus 524 ~~~p~~r-~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~ 598 (680)
..++... .......+ +|.||+....+ ..+.+||+.+++....-..+. ....+++.. ++. ||+....
T Consensus 218 ~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-----~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~--- 288 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDEDNNLLVANWGS-----SHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHE--- 288 (314)
T ss_dssp EECCCCSSCEEEEEEEBTTCCEEEEEETT-----TEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETT---
T ss_pred EECCCCCCCCCCceEECCCCCEEEEEcCC-----CEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCC---
Confidence 1222111 11222222 67888874222 368899988544322212222 222333332 444 7776542
Q ss_pred CCCCeEEEEeCCCC
Q 005735 599 AMVPSIEVYDPRLG 612 (680)
Q Consensus 599 ~~~~~v~~yD~~t~ 612 (680)
...+++|++...
T Consensus 289 --~~~l~~~~~~~~ 300 (314)
T 1pjx_A 289 --NNAVWKFEWQRN 300 (314)
T ss_dssp --TTEEEEEECSSC
T ss_pred --CCeEEEEeCCCC
Confidence 246899998753
No 216
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.06 E-value=5.4 Score=44.76 Aligned_cols=241 Identities=12% Similarity=0.035 Sum_probs=117.5
Q ss_pred ceEEEcCCCE-EEEEecCCCCcccCeEEEEeCC--CCeEEEcCCCCCCccceEEEEE------CCEEEEEecCCCCCccc
Q 005735 391 DELHLDPSES-IYLVGGCDGDSWLSTLELYLPS--CDVIKTLKPMSSARSYASAAML------NGELYIFGGGDGNSWHN 461 (680)
Q Consensus 391 ~~~~v~~~~~-Iyv~GG~~~~~~~~~v~~yd~~--t~~W~~l~~mp~~R~~~s~v~~------~~~IyV~GG~~~~~~~~ 461 (680)
+...+.++++ +|+. +. ...+.+||+. +.+ .+..++.......++.. +..+||..-. .+
T Consensus 200 ~~v~~SpDGr~lyv~-~~-----dg~V~viD~~~~t~~--~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~-----~~ 266 (567)
T 1qks_A 200 HISRLSASGRYLFVI-GR-----DGKVNMIDLWMKEPT--TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW-----PP 266 (567)
T ss_dssp EEEEECTTSCEEEEE-ET-----TSEEEEEETTSSSCC--EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----TT
T ss_pred cceEECCCCCEEEEE-cC-----CCeEEEEECCCCCCc--EeEEEecCCCCceeEEccccCCCCCEEEEEEcc-----CC
Confidence 3556666554 5554 32 2469999995 443 22222222222344443 3467776543 25
Q ss_pred eEEEEeCCCCcEEEC-C--CC--------CCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc
Q 005735 462 TVESYSPANDEWTSR-P--SL--------NGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR 530 (680)
Q Consensus 462 ~v~vyD~~t~~W~~l-~--~l--------p~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r 530 (680)
.+.++|..+.+=... + .+ |.+|.....+..++..+++-- .....+.+.|..+.....+..++..+
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----~~~g~v~~vd~~~~~~~~v~~i~~~~ 342 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----KETGKILLVDYTDLNNLKTTEISAER 342 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----TTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----cCCCeEEEEecCCCccceeeeeeccc
Confidence 678889777653221 1 11 122222212222333333311 12346778887776654454455555
Q ss_pred cceEEEEE-CCE-EEEEcCCCCCCcCceeEEEeCCCCcEEE---e-ccCCCCCceeEEEEE--CCEEEEEeccCCCCCCC
Q 005735 531 FALAAAEL-NGV-LYATGGYDGNEYMNSAERFDPREHYWTK---I-ANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVP 602 (680)
Q Consensus 531 ~~~s~~~~-~g~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~---v-~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~ 602 (680)
+.+....- +++ +|+... ..+.+.++|..+++-.. + ...|.+...... .. ++.+|+.+-.. ..
T Consensus 343 ~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g----~~ 412 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG----DD 412 (567)
T ss_dssp SEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS----SS
T ss_pred cccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCC----CC
Confidence 55444332 444 444332 23578999999886432 2 334554333222 33 35677765322 24
Q ss_pred eEEEEeCCCC-----cEEEcCCCCCCccc-eEEEEE--CCEEEEEecccCCCcccceEEEEcCC
Q 005735 603 SIEVYDPRLG-----SWMSGEPMKLSRGY-LGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 603 ~v~~yD~~t~-----~W~~v~~lp~~R~~-~s~v~~--~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
.|.++|..+. .|+.+..++..... ..+... +..+||---.......-++|.+|+..
T Consensus 413 ~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 413 SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred eEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 5888887763 28776655433111 112222 34677754222211223567777653
No 217
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=91.97 E-value=14 Score=41.06 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=103.1
Q ss_pred EEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 393 LHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 393 ~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
..+.+++ ..++.|+.++ .+..||..+.+.... +......-..+.+ ++.+++.||.++ .+.++|..
T Consensus 153 v~f~p~~~~~l~s~s~D~-----~v~lwd~~~~~~~~~--l~~H~~~V~~v~fspdg~~las~s~D~-----~i~lwd~~ 220 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDN-----TVAIFEGPPFKFKST--FGEHTKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGV 220 (611)
T ss_dssp EEECSSSSCEEEEEETTS-----CEEEEETTTBEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETT
T ss_pred EEECCCCCeEEEEEeCCC-----eEEEEECCCCeEeee--eccccCceEEEEECCCCCEEEEEECCC-----cEEEEECC
Confidence 3444444 3567777653 467778766543321 2222222222333 677888888663 58889987
Q ss_pred CCcEEE-CCC--CCC-CCccc-EEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEccccccc-ccceEEEEECCE
Q 005735 470 NDEWTS-RPS--LNG-TKGSL-AGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK-RFALAAAELNGV 541 (680)
Q Consensus 470 t~~W~~-l~~--lp~-~r~~~-a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~-r~~~s~~~~~g~ 541 (680)
+++... +.. +.. ..... .++.+ +++.++.|+.+ ..+.++|+.+++....-..... ......+..++.
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 765432 211 000 11111 12222 67777777755 3577899988876543222111 112223344666
Q ss_pred EEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 542 LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 542 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.++.++.++ .+..||+.+..-...-. .......+++.. +++.++.|+.++ .+.++|..+.....+
T Consensus 296 ~l~s~s~d~-----~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~~l~s~s~D~-----~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 296 ALVSISANG-----FINFVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRV 361 (611)
T ss_dssp CEEEEETTC-----CEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEC
T ss_pred EEEEEeCCC-----cEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeee
Confidence 666666553 56788887765322211 111222223322 566777777653 578899888766543
No 218
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=91.89 E-value=0.42 Score=43.90 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=73.7
Q ss_pred hHHHhhhhcccCCCcCccchhccCCCCcEEEEecCC---------CeEeeEEEeccCCCccccCCCCC-CC-CCCCCCCc
Q 005735 30 IKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYTD---------RKLHGIFEAASPGMMNINPYGWT-DG-SERTSYPA 98 (680)
Q Consensus 30 ~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~~---------~~l~g~~~a~s~g~~~~~~~a~~-~~-~~~~~~pa 98 (680)
-+.+-....+|.+-.+..+.+.+|||..+|.|--.. +..-||+|.++ .--.+|.+|. +. -...+||.
T Consensus 13 ~~~~~~~g~~GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~--e~y~D~t~~~~~~~~~~~~~p~ 90 (145)
T 2hd9_A 13 WEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTS--EPYVDFSRIFKPHRGGKETYPY 90 (145)
T ss_dssp HHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECS--CCEECCCCCSCCTTSSCCCCCE
T ss_pred HHHHHHcCccccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcC--CcEeCCCccCCCcccccCCeeE
Confidence 344455678899888889999999999999998766 79999999997 4455777663 11 11357888
Q ss_pred eEEEEEeeeecCCCCCcchhHHh---h----cccCCCCCCCCCCHHHHHHHHH
Q 005735 99 QVQIRVRMQCQPLNEEKFKPIIA---A----NYYTPHHFWFELDHSQASKLIA 144 (680)
Q Consensus 99 qv~~~~~~~~~pl~e~~~~~~i~---~----n~~~~~~f~~~l~~~q~~~l~~ 144 (680)
.|.++... +.+++-..++..+. + .++-.++--++++.++-+.+++
T Consensus 91 rv~v~~v~-~~~i~~~~l~~~l~fi~~k~~w~~~l~r~gv~pV~~~d~~~I~~ 142 (145)
T 2hd9_A 91 RVKIKPIK-IGEINFKPLINDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEK 142 (145)
T ss_dssp EEEEEEEE-EEEEESGGGGGGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHH
T ss_pred EEeCEEEe-eccCcHHHHHhhhhhhcccccccceecccCceEcCHHHHHHHHH
Confidence 88877764 46665544444322 0 1111233356667776666554
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=91.69 E-value=7.5 Score=38.85 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=96.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEEc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 523 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i 523 (680)
++.||+.+-.. ..+++||+.++....... +. .-.+.+.. ++++|+.. ...+..||+.+++++.+
T Consensus 24 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-~~--~~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 24 SNSLLFVDIPA-----KKVCRWDSFTKQVQRVTM-DA--PVSSVALRQSGGYVATI-------GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEEC-SS--CEEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEeC-CC--ceEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEE
Confidence 46888876543 468999998876544321 11 11122222 66777653 24688999999988776
Q ss_pred ccccc--cccceEEEEE--CCEEEEEcCCCC------CCcCceeEEEeCCCCcEEEec-cCCCCCceeEEEEE-C-CEEE
Q 005735 524 RSMLQ--KRFALAAAEL--NGVLYATGGYDG------NEYMNSAERFDPREHYWTKIA-NMNRRRGCHSLAVL-N-GKLY 590 (680)
Q Consensus 524 ~~~p~--~r~~~s~~~~--~g~Lyv~GG~~~------~~~~~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~~-~-~~Iy 590 (680)
..... +........+ +|+||+..-... ......++++|+.. +...+. .+. ....++.. + ..||
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~---~pngi~~spdg~~ly 164 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD---ISNGLDWSLDHKIFY 164 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES---BEEEEEECTTSCEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc---cccceEEcCCCCEEE
Confidence 54321 1112222223 678887431111 01234688888753 333332 111 11233333 3 4578
Q ss_pred EEeccCCCCCCCeEEEEeC--CCCcEEE---cCCCCC-CccceEEEEE-CCEEEEEecccCCCcccceEEEEcCC-CCe
Q 005735 591 ALGGFDGSAMVPSIEVYDP--RLGSWMS---GEPMKL-SRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGW 661 (680)
Q Consensus 591 viGG~~~~~~~~~v~~yD~--~t~~W~~---v~~lp~-~R~~~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W 661 (680)
+.... ...|++||. .+..... +..++. .....++++- +++||+..... ..|.+|++. .+.
T Consensus 165 v~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~------~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 165 YIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG------GRVIRLDPVTGKR 232 (297)
T ss_dssp EEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT------TEEEEECTTTCCE
T ss_pred EecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC------CEEEEEcCCCceE
Confidence 77643 256888875 4444321 122221 1122334443 57888875322 248888886 544
No 220
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.46 E-value=13 Score=37.63 Aligned_cols=184 Identities=15% Similarity=0.211 Sum_probs=84.6
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe-----EEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV-----IKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~-----W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
++.+++.|+.++ .+.++|..+.. -.....+......-..+.+ ++.+++.|+.+ ..+.+||..+
T Consensus 38 d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v~lwd~~~ 107 (343)
T 2xzm_R 38 DSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD-----KTLRLWDLRT 107 (343)
T ss_dssp CCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT-----SEEEEEETTS
T ss_pred CCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC-----CcEEEEECCC
Confidence 677888888653 35566654321 0111111111111222222 45666677765 3688899887
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEEC---------
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN--------- 539 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~--------- 539 (680)
.+.... +......-.++.+ +++.++.||.++ .+.+||+....-..............++.+.
T Consensus 108 ~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 180 (343)
T 2xzm_R 108 GTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180 (343)
T ss_dssp SCEEEE--EECCCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCC
T ss_pred CcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccCCceeeeecccCCCceeeeeeecccccccccc
Confidence 654221 1111111112222 566666676543 4667777643322221111111111222221
Q ss_pred ---CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 540 ---GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 540 ---g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
+.+++.|+.++ .+.+||.....-..+.. ......+++.. +++.++.|+.+ ..+.+||+.
T Consensus 181 ~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs~d-----g~v~iwd~~ 243 (343)
T 2xzm_R 181 QPFAPYFASVGWDG-----RLKVWNTNFQIRYTFKA--HESNVNHLSISPNGKYIATGGKD-----KKLLIWDIL 243 (343)
T ss_dssp CSSCCEEEEEETTS-----EEEEEETTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETT-----CEEEEEESS
T ss_pred CCCCCEEEEEcCCC-----EEEEEcCCCceeEEEcC--ccccceEEEECCCCCEEEEEcCC-----CeEEEEECC
Confidence 14566666654 57788843321111111 11112222222 66777777765 357888874
No 221
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.43 E-value=2.2 Score=43.90 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
++.+++.|+.+ ..+.+||+.+.+-...-..+........... ++.+++.|+.++ .+.+||..+.....
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP-----KVQLCDLKSGSCSH 180 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS-----SEEEEESSSSCCCE
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC-----eEEEEeCCCcceee
Confidence 44566666644 3577899888765443332222111111111 344677776553 68889987654322
Q ss_pred eccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCCCC
Q 005735 570 IANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 570 v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
.-.. ......+++.. ++. +++.|+.++ .+.+||+.+.
T Consensus 181 ~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 181 ILQG-HRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp EECC-CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred eecC-CCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 1110 11112222222 333 777777653 4788988664
No 222
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.19 E-value=14 Score=41.72 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCEEEEEecCCCCcccCeEEEEeC-CCC--eEEEcCCCCCC-----c---cceEEEE--ECCE----EEEEecCCCCCcc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLP-SCD--VIKTLKPMSSA-----R---SYASAAM--LNGE----LYIFGGGDGNSWH 460 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~-~t~--~W~~l~~mp~~-----R---~~~s~v~--~~~~----IyV~GG~~~~~~~ 460 (680)
++.||+.+.. ...++.+|. .++ .|+.-...... + ...+.++ .+++ ||+... +
T Consensus 62 ~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-d----- 130 (599)
T 1w6s_A 62 DGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-D----- 130 (599)
T ss_dssp TTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-T-----
T ss_pred CCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-C-----
Confidence 8888887752 235899999 776 48875443221 1 1223444 5666 887533 1
Q ss_pred ceEEEEeCCCCc--EEECCCCCCC--CcccEEEEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEc
Q 005735 461 NTVESYSPANDE--WTSRPSLNGT--KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRT 523 (680)
Q Consensus 461 ~~v~vyD~~t~~--W~~l~~lp~~--r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i 523 (680)
..++.+|..|++ |+.-..-+.. ....+-++.+++||+-.+.........+..||..+++ |+.-
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 368899988774 8653211100 1122335578998875432211124578999999875 8654
No 223
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=90.95 E-value=20 Score=41.11 Aligned_cols=249 Identities=13% Similarity=0.010 Sum_probs=122.0
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCC---CCeEEEcCC---CCCCc-cceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPS---CDVIKTLKP---MSSAR-SYASAAML--NGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~---t~~W~~l~~---mp~~R-~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
++.+|.+-- .+......+|+.+.. ...|+.+-. +.... .......+ +++.++++...++.-...++++|.
T Consensus 118 G~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl 196 (741)
T 1yr2_A 118 GASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV 196 (741)
T ss_dssp TTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEET
T ss_pred CCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 555554432 222334678888876 667776522 22111 11122222 666666654332222347999999
Q ss_pred CCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCC---------cccceEEEEeCCCccE--EEcccccc-cccceEE
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGL---------ECFSDVEMLDLDIGKW--IRTRSMLQ-KRFALAA 535 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~---------~~~~~ve~yD~~t~~W--~~i~~~p~-~r~~~s~ 535 (680)
.+++..... .+.... ...+.. + +-++++..+.. .....++.+++.++.- ..+...+. +......
T Consensus 197 ~tg~~~~~~-~~~~~~-~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 197 ADGKPLADE-LKWVKF-SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTCCEEEEE-EEEEES-CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCcc-CCCcee-ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 998875431 111110 112222 4 43333333221 1244678888876542 12211111 1122222
Q ss_pred E-EECCEEEEEcCCCCCCcCceeEEEeCCCC--c-EEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 536 A-ELNGVLYATGGYDGNEYMNSAERFDPREH--Y-WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 536 ~-~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~-W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
. .-+|+..++.........+.++++|..+. . |+.+........ ..+...++.||+....+ .....++.+|+.+
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQLWFVSGDG--APLKKIVRVDLSG 350 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEEEEETTEEEEEECTT--CTTCEEEEEECSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EEEeccCCEEEEEECCC--CCCCEEEEEeCCC
Confidence 2 22565444443332223568999999877 6 888754332222 22233477777775432 2245799999987
Q ss_pred --CcEEEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 612 --GSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 612 --~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
..|..+-+-... ....+...++++++....+. ...+++++..
T Consensus 351 ~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~ 394 (741)
T 1yr2_A 351 STPRFDTVVPESKD-NLESVGIAGNRLFASYIHDA----KSQVLAFDLD 394 (741)
T ss_dssp SSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETT----EEEEEEEETT
T ss_pred CccccEEEecCCCC-eEEEEEEECCEEEEEEEECC----EEEEEEEeCC
Confidence 579886432211 11233344777777765433 2346666643
No 224
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.91 E-value=17 Score=37.95 Aligned_cols=252 Identities=12% Similarity=0.084 Sum_probs=128.1
Q ss_pred cceEEEcC--CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCC---CCC--c-------cceEEEEE----CCEEEEE
Q 005735 390 SDELHLDP--SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPM---SSA--R-------SYASAAML----NGELYIF 451 (680)
Q Consensus 390 ~~~~~v~~--~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~m---p~~--R-------~~~s~v~~----~~~IyV~ 451 (680)
..+..+.+ .+.||+.+... ..-.-+++.+-...+|+.+... +.. + ...+++.. .+.||+.
T Consensus 57 v~~i~~dp~~~~~l~~g~~~g--~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 57 IHHIVQDPREPERMLMAARTG--HLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp EEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred eEEEEECCCCCCeEEEEecCC--CCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 44555655 67788766421 0112477777777899988632 211 1 11223332 4677775
Q ss_pred ecCCCCCccceEEEEeCCCCcEEECCCC---CC--------------CCcccEEEEE---CCEEEEEccCCCCcccceEE
Q 005735 452 GGGDGNSWHNTVESYSPANDEWTSRPSL---NG--------------TKGSLAGATI---DNKIFAIGGGNGLECFSDVE 511 (680)
Q Consensus 452 GG~~~~~~~~~v~vyD~~t~~W~~l~~l---p~--------------~r~~~a~~v~---~gkIyV~GG~~~~~~~~~ve 511 (680)
+.. ..+++.+....+|+.+..+ |. ....++.++- .+.||+..+. ..++
T Consensus 135 ~~~------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~ 202 (394)
T 3b7f_A 135 TSP------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVF 202 (394)
T ss_dssp EET------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET------BEEE
T ss_pred ecC------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC------CCEE
Confidence 431 2478888888899987532 21 0111222222 2567775321 2366
Q ss_pred EEeCCCccEEEcccc------ccc-----ccceEEEEEC---CEEEEEcCCCCCCcCceeEEEeCCCCcEEEecc-CCCC
Q 005735 512 MLDLDIGKWIRTRSM------LQK-----RFALAAAELN---GVLYATGGYDGNEYMNSAERFDPREHYWTKIAN-MNRR 576 (680)
Q Consensus 512 ~yD~~t~~W~~i~~~------p~~-----r~~~s~~~~~---g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~-~p~~ 576 (680)
+.+-...+|+.+..- |.. ...+.++... +.||+..+ ..+++.+....+|+.+.. +|..
T Consensus 203 ~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-------~gl~~s~D~G~tW~~~~~~l~~~ 275 (394)
T 3b7f_A 203 ESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-------CGIYRMDRREGVWKRIGDAMPRE 275 (394)
T ss_dssp EESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-------TEEEEEETTTTEEECGGGGSCTT
T ss_pred EECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-------CeEEEeCCCCCcceECCCCCCCC
Confidence 676677899887431 211 1223333331 67777432 347888888889999864 5542
Q ss_pred --CceeEEEEE---CCEEEEEeccCCC-------CCCCeEEEEeCCCCcEEEcC-CCCCCccc-----eEEEEE--C-CE
Q 005735 577 --RGCHSLAVL---NGKLYALGGFDGS-------AMVPSIEVYDPRLGSWMSGE-PMKLSRGY-----LGAAVV--K-EA 635 (680)
Q Consensus 577 --r~~~s~v~~---~~~IyviGG~~~~-------~~~~~v~~yD~~t~~W~~v~-~lp~~R~~-----~s~v~~--~-~~ 635 (680)
...+.++.. .+.||+.....+. .....++.-.-...+|+.+. .+|....+ .++++. + +.
T Consensus 276 ~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~ 355 (394)
T 3b7f_A 276 VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVG 355 (394)
T ss_dssp TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCC
T ss_pred CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCE
Confidence 233344432 3567775311110 01122333222236899875 34432211 233332 3 34
Q ss_pred EEEEecccCCCcccceEEEEcCC-CCeEeccc-CCC
Q 005735 636 IYVIGGVKNGSEIVDTVERFKEG-QGWEEINS-RAI 669 (680)
Q Consensus 636 lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~~-~p~ 669 (680)
||+ |+... .++.-.-+ .+|+.+.. +|.
T Consensus 356 l~~-g~~~g------~l~~S~D~G~tW~~~~~~lp~ 384 (394)
T 3b7f_A 356 VYF-GTTGG------EIWASADEGEHWQCIASHLPH 384 (394)
T ss_dssp EEE-ECTTS------CEEEESSTTSBCEEEECSCSC
T ss_pred EEE-EeCCC------eEEEECCCCCCceEcccCCCC
Confidence 665 44222 24443333 88988753 554
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=90.90 E-value=26 Score=40.02 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=72.4
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCC--------CcccEEEEECCEEEEEccCCCCcccce
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGT--------KGSLAGATIDNKIFAIGGGNGLECFSD 509 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~--------r~~~a~~v~~gkIyV~GG~~~~~~~~~ 509 (680)
+.++.++.||+.+.. ..++.+|..|+ .|+.-...+.. ....+.++.+++||+... ...
T Consensus 65 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~ 132 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGR 132 (689)
T ss_dssp CCEEETTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSE
T ss_pred cCEEECCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCE
Confidence 445679999997652 45899998876 58765433211 011234567889988642 246
Q ss_pred EEEEeCCCcc--EEEccc-ccc--cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEe
Q 005735 510 VEMLDLDIGK--WIRTRS-MLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKI 570 (680)
Q Consensus 510 ve~yD~~t~~--W~~i~~-~p~--~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v 570 (680)
+..+|..+++ |+.-.. -+. .....+.++.++++|+-.+.........++.||..+++ |+.-
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 8899998875 876432 111 11222335678988874332111234578999998875 8754
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=90.58 E-value=4.5 Score=43.72 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=124.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCC----CCCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGD----GNSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~----~~~~~~~v~vyD~~t~ 471 (680)
...+|+.-....... +.+.++|+.+++-.. .++..... .++.. +..+||.--.. .....+.+.++|+.++
T Consensus 84 ~~~vyV~n~~~~~~~-~~VsVID~~t~~vv~--~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 84 ARRVYIQDPAHFAAI-TQQFVIDGSTGRILG--MTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp TTEEEEEECTTTCSS-EEEEEEETTTTEEEE--EEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCEEEEECCCcCCCC-CeEEEEECCCCEEEE--EEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567888765321111 689999999886432 23333333 33333 56788874210 0012357999999998
Q ss_pred cEEECCCCC-CCC-----cccEEEE-ECC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccc-------cccceEEE
Q 005735 472 EWTSRPSLN-GTK-----GSLAGAT-IDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ-------KRFALAAA 536 (680)
Q Consensus 472 ~W~~l~~lp-~~r-----~~~a~~v-~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~-------~r~~~s~~ 536 (680)
+-..--.++ ..| .-+..++ -++ .+||..-. ..+.+.++|+.+.+=...-+.+. ........
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence 653221122 111 1122222 244 58886311 13568899999876432211111 11111111
Q ss_pred EECCEEEEEcCCCCC--------------------------------CcCceeEEEeCCCCc------EEEeccC--CC-
Q 005735 537 ELNGVLYATGGYDGN--------------------------------EYMNSAERFDPREHY------WTKIANM--NR- 575 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~--------------------------------~~~~~v~~yD~~t~~------W~~v~~~--p~- 575 (680)
.-+|+++++.-..+. .....+++.|...+. |.....- ..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 113333333221110 011235666654433 3221100 00
Q ss_pred --CCceeEEEEE--CCEEEEEeccCCC----CCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CC--EEEEEecccC
Q 005735 576 --RRGCHSLAVL--NGKLYALGGFDGS----AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KE--AIYVIGGVKN 644 (680)
Q Consensus 576 --~r~~~s~v~~--~~~IyviGG~~~~----~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~--~lyV~GG~~~ 644 (680)
+...+.++.. ++++|+.-...+. ...++|.++|..+. +.+..++.+....+++.- ++ .+|+..+.+
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s- 392 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--ERINKIELGHEIDSINVSQDAEPLLYALSAGT- 392 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEEEECEEEECCSSSCEEEEEETTT-
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC--eEEEEEECCCCcCeEEEccCCCEEEEEEcCCC-
Confidence 1111112333 5788987532111 12357999998764 444555555555555555 33 566665432
Q ss_pred CCcccceEEEEcCCCCeEecccC-CCC
Q 005735 645 GSEIVDTVERFKEGQGWEEINSR-AIG 670 (680)
Q Consensus 645 ~~~~~~~ve~y~~~~~W~~v~~~-p~~ 670 (680)
++|.+||. .+|+.+... ++|
T Consensus 393 -----~~VsVID~-~t~kvv~tI~~vG 413 (426)
T 3c75_H 393 -----QTLHIYDA-ATGEELRSVDQLG 413 (426)
T ss_dssp -----TEEEEEET-TTCCEEEEECCCS
T ss_pred -----CeEEEEEC-CCCCEEEEecCCC
Confidence 46889998 667777664 565
No 227
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=90.46 E-value=9.2 Score=41.60 Aligned_cols=216 Identities=12% Similarity=0.141 Sum_probs=106.1
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPA 469 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~ 469 (680)
+..+.+++..++.|+.++ .+..||........+... ...-..+.+ +++.++.|+.+ ..+.+||..
T Consensus 349 ~~~~s~~g~~l~~~~~dg-----~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~ 415 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRN 415 (577)
T ss_dssp EEEECTTSSEEEEEETTS-----EEEEEETTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETT-----SEEEEECTT
T ss_pred EEEECCCCCEEEEEeCCC-----EEEEEcCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCC
Confidence 455666777888887543 467778665544444221 111122222 56667777654 357778754
Q ss_pred CCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEc
Q 005735 470 NDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATG 546 (680)
Q Consensus 470 t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~G 546 (680)
...-..+... .....+..+ +++.++.++.+ ..+.+||.....-..+...... ..+++.. ++++++.|
T Consensus 416 ~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~--v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 416 GQLLQTLTGH---SSSVWGVAFSPDDQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASA 485 (577)
T ss_dssp CCEEEEEECC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSCEEEEEECCSSC--EEEEEECTTSCEEEEE
T ss_pred CCEEEEecCC---CCCeEEEEECCCCCEEEEEcCC-----CEEEEEECCCCEEEEEcCCCCC--EEEEEEcCCCCEEEEE
Confidence 4333222211 111112222 56677776654 3466788655433332211111 1122222 67777777
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCcc
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG 625 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~ 625 (680)
+.++ .+.+||.....-..+..- .....+++.. ++++++.|+.+ ..|.+||.....-..+..-. ..
T Consensus 486 ~~d~-----~i~iw~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~d-----g~v~lwd~~~~~~~~~~~h~--~~ 551 (577)
T 2ymu_A 486 SDDK-----TVKLWNRNGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS--SS 551 (577)
T ss_dssp ETTS-----EEEEEETTSCEEEEEECC--SSCEEEEEECTTSSCEEEEETT-----SEEEEECTTSCEEEEEECCS--SC
T ss_pred eCCC-----EEEEEcCCCCEEEEEeCC--CCCEEEEEEcCCCCEEEEEECc-----CEEEEEeCCCCEEEEEcCCC--CC
Confidence 7653 577888654333333211 1111222222 66777777754 35788887554433332211 11
Q ss_pred ceEEEEE-CCEEEEEecccC
Q 005735 626 YLGAAVV-KEAIYVIGGVKN 644 (680)
Q Consensus 626 ~~s~v~~-~~~lyV~GG~~~ 644 (680)
-.+++.. +++.++.||.+.
T Consensus 552 v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 552 VWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp EEEEEECTTSSCEEEEETTS
T ss_pred EEEEEEcCCCCEEEEEeCCC
Confidence 1222222 667777777654
No 228
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=90.32 E-value=5.7 Score=39.73 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=58.3
Q ss_pred ceEEEcCCC-EEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC-----CccceEEEEE-C-CEEEEEecC---CCCC-
Q 005735 391 DELHLDPSE-SIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS-----ARSYASAAML-N-GELYIFGGG---DGNS- 458 (680)
Q Consensus 391 ~~~~v~~~~-~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~-----~R~~~s~v~~-~-~~IyV~GG~---~~~~- 458 (680)
....+.+++ .+|+.+..+ ..+++||+.+++....-..+. ......++.. + ..||+.+.. ....
T Consensus 46 ~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp CEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred ceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence 455666665 467666432 468999999887543322211 1112233332 3 456665521 0000
Q ss_pred --ccceEEEEeCCCCcEEE-CCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 459 --WHNTVESYSPANDEWTS-RPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 459 --~~~~v~vyD~~t~~W~~-l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
....+.+||..+++-.. +.....++.-.+.+. -++++|+.++ ++.++|+.+++-.
T Consensus 121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~--------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP--------DIYKMDVKTGKYT 179 (349)
T ss_dssp EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS--------SEEEECTTTCCEE
T ss_pred ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccC--------cEEEEeCCCCcee
Confidence 02478999987743211 111112222222222 3667777532 3778888776543
No 229
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=90.30 E-value=12 Score=37.69 Aligned_cols=198 Identities=11% Similarity=0.046 Sum_probs=103.4
Q ss_pred ceEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC---CccceEEEEE--CCEEEEEecCCC--------
Q 005735 391 DELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS---ARSYASAAML--NGELYIFGGGDG-------- 456 (680)
Q Consensus 391 ~~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~---~R~~~s~v~~--~~~IyV~GG~~~-------- 456 (680)
....+.. ++.||+.-.. ..+.+||+.++..+.+..... ......+++. ++.||+.-....
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence 3455664 7889987432 237889988776555532111 1122334443 578998643210
Q ss_pred ----CCccceEEEEeCCCCcEEECCC-CCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCc---cEEEcccc
Q 005735 457 ----NSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIG---KWIRTRSM 526 (680)
Q Consensus 457 ----~~~~~~v~vyD~~t~~W~~l~~-lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~---~W~~i~~~ 526 (680)
......+++||+.+.+.+.... +..+ ...+.- ++ .|||... ..+.+.+|++... .++....+
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~-----~~~~I~~~~~~~~~~~~~~~~~~~ 228 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEF-----LSHQIVKYWLEGPKKGTAEVLVKI 228 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEG-----GGTEEEEEESSSTTTTCEEEEEEC
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeC-----CCCeEEEEECCCCcCCccceEEeC
Confidence 1123569999998877654321 1111 122332 44 4888632 2357889998752 34333322
Q ss_pred cccccceEEEEE--CCEEEEEcCCCCC-----CcCceeEEEeCCCCcEEEeccCCC---CCceeEEEEECCEEEEEeccC
Q 005735 527 LQKRFALAAAEL--NGVLYATGGYDGN-----EYMNSAERFDPREHYWTKIANMNR---RRGCHSLAVLNGKLYALGGFD 596 (680)
Q Consensus 527 p~~r~~~s~~~~--~g~Lyv~GG~~~~-----~~~~~v~~yD~~t~~W~~v~~~p~---~r~~~s~v~~~~~IyviGG~~ 596 (680)
+. +....+ +|.||+....... .....+.+||+....-..+. .+. .....+++..++.||+.+..
T Consensus 229 ~g----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g~~~~~~~~~~~~~g~L~v~~~~- 302 (322)
T 2fp8_A 229 PN----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPPFAGEHFEQIQEHDGLLYIGTLF- 302 (322)
T ss_dssp SS----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTTTTTSCCCEEEEETTEEEEECSS-
T ss_pred CC----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCCCccccceEEEEeCCEEEEeecC-
Confidence 21 222333 5788887532100 01246889998654444443 221 12233444568899987532
Q ss_pred CCCCCCeEEEEeCCCC
Q 005735 597 GSAMVPSIEVYDPRLG 612 (680)
Q Consensus 597 ~~~~~~~v~~yD~~t~ 612 (680)
.+.|.+|++..+
T Consensus 303 ----~~~i~~~~~~~~ 314 (322)
T 2fp8_A 303 ----HGSVGILVYDKK 314 (322)
T ss_dssp ----CSEEEEEEC---
T ss_pred ----CCceEEEecccc
Confidence 356888887643
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=90.26 E-value=29 Score=39.47 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCCC--------cccEEEEECCEEEEEccCCCCcccc
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTK--------GSLAGATIDNKIFAIGGGNGLECFS 508 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~r--------~~~a~~v~~gkIyV~GG~~~~~~~~ 508 (680)
.+.++.++.||+.... ..++.+|..++ .|+.-...+... ...+.++.+++||+... ..
T Consensus 60 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg 127 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DG 127 (668)
T ss_dssp CCCEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TS
T ss_pred cCCEEECCEEEEECCC------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CC
Confidence 3445679999998652 46899998876 487754332110 11234567889988642 24
Q ss_pred eEEEEeCCCcc--EEEccccc--ccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEe
Q 005735 509 DVEMLDLDIGK--WIRTRSML--QKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKI 570 (680)
Q Consensus 509 ~ve~yD~~t~~--W~~i~~~p--~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v 570 (680)
.+..+|..+++ |+.-..-+ ......+.++.++++|+..+.........++.||..+++ |+.-
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 68899998875 87643211 112222335568888874332111234578999998865 8764
No 231
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=90.03 E-value=19 Score=37.08 Aligned_cols=149 Identities=9% Similarity=-0.078 Sum_probs=73.8
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
+|++.++++.+. ...+.++|+.+.+-........ .-..++.. ++++++.|+. +.+.+++..++.....
T Consensus 144 Dg~~la~as~~~---d~~i~iwd~~~~~~~~~~~~~~--~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 144 EGTVAAIASSKV---PAIMRIIDPSDLTEKFEIETRG--EVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIAR 212 (365)
T ss_dssp TSSCEEEEESCS---SCEEEEEETTTTEEEEEEECSS--CCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEE
T ss_pred CCCEEEEEECCC---CCEEEEeECCCCcEEEEeCCCC--ceEEEEEccCCceEEeccc------eeEEEEEeccCcceee
Confidence 676555433221 2357789998876543321111 11222222 5666666653 2466777777665443
Q ss_pred ccCCCCCcee-EEE-EECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC--CCCCCccceEEEEE--CCEEEEEecccC
Q 005735 571 ANMNRRRGCH-SLA-VLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE--PMKLSRGYLGAAVV--KEAIYVIGGVKN 644 (680)
Q Consensus 571 ~~~p~~r~~~-s~v-~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~--~lp~~R~~~s~v~~--~~~lyV~GG~~~ 644 (680)
.......... +++ .-++..++.++.++.. ...++.+|.....+.... .+........++.+ ++++++.|+.++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 3222222222 222 2378888877755431 224667777666554332 11111112222223 778888888764
Q ss_pred CCcccceEEEEcCC
Q 005735 645 GSEIVDTVERFKEG 658 (680)
Q Consensus 645 ~~~~~~~ve~y~~~ 658 (680)
. |.+|+..
T Consensus 292 ~------V~iwd~~ 299 (365)
T 4h5i_A 292 S------IALVKLK 299 (365)
T ss_dssp C------EEEEETT
T ss_pred E------EEEEECC
Confidence 3 5566543
No 232
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.83 E-value=22 Score=37.38 Aligned_cols=200 Identities=15% Similarity=0.053 Sum_probs=111.3
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCC--CCCCCcccEEE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS--LNGTKGSLAGA 489 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~--lp~~r~~~a~~ 489 (680)
..+.++++.......+.. ......+++.. ++.||+.--.. ..++++++.....+.+.. +..+ .+.+.-
T Consensus 96 ~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~~~~~~~~~~~~p-~glavd 167 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSNVEEVVSTGLESP-GGLAVD 167 (386)
T ss_dssp SCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCCEEEEECSSCSCC-CCEEEE
T ss_pred ccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCCCCcEEEEeCCCCCc-cEEEEE
Confidence 357888887766555432 12233445544 58899875432 468999998776655422 2222 111222
Q ss_pred EECCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 490 TIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 490 v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
..++.||+.... ...++++++....-..+. .+..| ..+++- ++.||+.--.. ...|+++++...
T Consensus 168 ~~~g~lY~~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~----~~~I~r~~~dG~ 235 (386)
T 3v65_B 168 WVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMDGS 235 (386)
T ss_dssp TTTTEEEEEETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETTSC
T ss_pred eCCCeEEEEcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC----CCEEEEEeCCCC
Confidence 237889998542 346888888755433221 22222 233343 67899874211 257899998765
Q ss_pred cEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEe
Q 005735 566 YWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 566 ~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~G 640 (680)
.-+.+.... -....++++- +++||+.... ...|+.+|+....-..+.... .....++++.++.||+.-
T Consensus 236 ~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td 305 (386)
T 3v65_B 236 GRRIIADTH-LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTD 305 (386)
T ss_dssp SCEEEECSS-CSCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEE
T ss_pred CcEEEEECC-CCCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEee
Confidence 434332211 1122345543 7899998643 367999998754333322111 123356667888999885
No 233
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=89.77 E-value=10 Score=45.40 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=88.4
Q ss_pred cceEEEc-CCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEE-EEe
Q 005735 390 SDELHLD-PSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVE-SYS 467 (680)
Q Consensus 390 ~~~~~v~-~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~-vyD 467 (680)
.....+. +++..++++. ...++.++..++....+...+..+....... +++.+++++. ...++ +||
T Consensus 298 v~~~~~S~pdG~~la~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d 365 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYD 365 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEE
T ss_pred cceeeecCCCCCEEEEEE------cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEE
Confidence 3455666 6666555554 2468888888877666543322122222222 5555555543 24788 999
Q ss_pred CCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEE
Q 005735 468 PANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYAT 545 (680)
Q Consensus 468 ~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~ 545 (680)
..+.....+. ... .......+ +++.+++++.+ ..+.++|+.+++-..+..-...........-+|+.+++
T Consensus 366 ~~~~~~~~l~--~~~-~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 366 YRTGKAEKFE--ENL-GNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp TTTCCEEECC--CCC-CSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred CCCCCceEec--CCc-cceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEE
Confidence 9888776664 111 22222222 67766665533 37889999988765553211111111122226665555
Q ss_pred cCCCC-----CCcCceeEEEeCCCCcEEEec
Q 005735 546 GGYDG-----NEYMNSAERFDPREHYWTKIA 571 (680)
Q Consensus 546 GG~~~-----~~~~~~v~~yD~~t~~W~~v~ 571 (680)
++.+. ......+++||..+++...+.
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred EecCccccccCCCCCeEEEEECCCCcEEEee
Confidence 54432 122357999999888755543
No 234
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.66 E-value=25 Score=40.35 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=103.2
Q ss_pred EEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 393 LHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
.....++.|++... .-+++||+.++.+...... ......+++..++.|+|... ..+++||+.+++
T Consensus 68 i~~d~~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~ 132 (758)
T 3ott_A 68 GVIIDNTYLYMGTD-------NGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRK 132 (758)
T ss_dssp EEEETTTEEEEEET-------TEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET-------TEEEEEETTTCC
T ss_pred EEEcCCCcEEEEeC-------CCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC-------CcceeEeCCCCe
Confidence 34445777877542 2478999999887652111 11122233345788887532 248899999988
Q ss_pred EEECCC----CCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccc----cccceEEEEE--CC
Q 005735 473 WTSRPS----LNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ----KRFALAAAEL--NG 540 (680)
Q Consensus 473 W~~l~~----lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~----~r~~~s~~~~--~g 540 (680)
++.... ++. ....+... ++.||+.. ...+.+||+.++++........ .....+++.- ++
T Consensus 133 ~~~~~~~~~~l~~--~~i~~i~~d~~g~lWigt-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 133 LTSFDTRRNGLPN--NTIYSIIRTKDNQIYVGT-------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp EEEECHHHHCCSC--SCEEEEEECTTCCEEEEE-------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTT
T ss_pred EEEeccCCCCcCC--CeEEEEEEcCCCCEEEEe-------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCC
Confidence 876521 221 11112222 57788742 1357889999988765532111 1112233333 24
Q ss_pred EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 541 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 541 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.||+-. . ..+++||+.++++.....++.. ...+++.- ++.|++.- . ..+.+||+.++.+..+
T Consensus 204 ~lWigt--~-----~Gl~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT-~------~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 204 CVWIGT--E-----GYLFQYFPSTGQIKQTEAFHNN-SIKSLALDGNGDLLAGT-D------NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp EEEEEE--E-----EEEEEEETTTTEEEEEEEEEEE-EEEEEEECTTCCEEEEE-T------TEEEEECCTTSCCEEE
T ss_pred EEEEEE--C-----CCCeEEcCCCCeEEeccCCCCC-eEEEEEEcCCCCEEEEe-C------CceeEEecCCCcEEEE
Confidence 577731 1 2578999999888766443211 11222222 45666632 1 3478899888777654
No 235
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=89.60 E-value=27 Score=39.35 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=70.7
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeC-CCC--cEEECCCCCCC-----Cc---ccEEEE--ECCE----EEEEccC
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSP-AND--EWTSRPSLNGT-----KG---SLAGAT--IDNK----IFAIGGG 501 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~-~t~--~W~~l~~lp~~-----r~---~~a~~v--~~gk----IyV~GG~ 501 (680)
.+.++.++.||+.+.. ...++.+|. .++ .|+.-...+.. ++ ..+.++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 4456679999998752 135899999 776 58875443211 11 122344 5777 888532
Q ss_pred CCCcccceEEEEeCCCcc--EEEcc-ccccc-ccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEe
Q 005735 502 NGLECFSDVEMLDLDIGK--WIRTR-SMLQK-RFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKI 570 (680)
Q Consensus 502 ~~~~~~~~ve~yD~~t~~--W~~i~-~~p~~-r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v 570 (680)
...+..+|..+++ |+.-. ..... ....+-++.++++|+-.+.........++.||..+++ |+.-
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 -----DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp -----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 2468899998875 87532 21111 1122334568888774432111223578999998765 7765
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=89.00 E-value=31 Score=39.20 Aligned_cols=205 Identities=11% Similarity=-0.019 Sum_probs=103.8
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCC--------cccceEEEEeCC
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGL--------ECFSDVEMLDLD 516 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~--------~~~~~ve~yD~~ 516 (680)
+++.++++-..++.-...++++|..+++.... .++..+....+-. +++-+++...+.. .....++.+++.
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg 216 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG 216 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence 66666654433223235799999999987543 1222222223334 7663333332221 334568888877
Q ss_pred CccE--EEcccccc--cccceEEE-EECCEEEEEcCCCCCCcCceeEEEeCCCC--cEEEeccCCCCCceeEEEEECCEE
Q 005735 517 IGKW--IRTRSMLQ--KRFALAAA-ELNGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANMNRRRGCHSLAVLNGKL 589 (680)
Q Consensus 517 t~~W--~~i~~~p~--~r~~~s~~-~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~~p~~r~~~s~v~~~~~I 589 (680)
+..= ..+...+. +....... .-+++.+++....+ ...+.++++|..+. .|+.+..-..... ......++.|
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l 294 (693)
T 3iuj_A 217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTL 294 (693)
T ss_dssp SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEE
T ss_pred CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEE
Confidence 6542 12211121 12122222 22555443332211 12358999998765 6877754322221 2233458889
Q ss_pred EEEeccCCCCCCCeEEEEeCCCC---cEEEcCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcCCCCe
Q 005735 590 YALGGFDGSAMVPSIEVYDPRLG---SWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQGW 661 (680)
Q Consensus 590 yviGG~~~~~~~~~v~~yD~~t~---~W~~v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~~~W 661 (680)
|+....+. ....++.+|+.+. .|+.+-+-.... . .....++.|++..-.+. ...+++++....+
T Consensus 295 ~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 295 YLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDA----TARVEQFDYEGKR 361 (693)
T ss_dssp EEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETT----EEEEEEECTTSCE
T ss_pred EEEECCCC--CCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECC----eeEEEEEECCCCe
Confidence 98875432 2457899998763 488754322221 1 44445666655543222 2456777765333
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=88.84 E-value=18 Score=35.18 Aligned_cols=198 Identities=10% Similarity=-0.052 Sum_probs=108.5
Q ss_pred cceEEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 390 SDELHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 390 ~~~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
.....+.+ ++.||+.-.. ...++++++....-..+.... ....+.+++. ++.||+..... ..+.++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~ 106 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQL-----DRIEVA 106 (267)
T ss_dssp EEEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETTT-----TEEEEE
T ss_pred EEEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECCC-----CEEEEE
Confidence 34556655 6788887643 246899998776433332111 1233455554 57999986532 468889
Q ss_pred eCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEE
Q 005735 467 SPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVL 542 (680)
Q Consensus 467 D~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~L 542 (680)
++....-+.+......+ -...++- ++.||+..... ....++++++....-..+.... ......++.- +++|
T Consensus 107 ~~~g~~~~~~~~~~~~~-P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~~-~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 107 KMDGTQRRVLFDTGLVN-PRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDN-LGLPNGLTFDAFSSQL 181 (267)
T ss_dssp ETTSCSCEEEECSSCSS-EEEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECTT-CSCEEEEEEETTTTEE
T ss_pred EcCCCCEEEEEECCCCC-ccEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEECC-CCCCcEEEEcCCCCEE
Confidence 88754333221111111 1223332 67899985321 1356788888754433322111 1122233333 5789
Q ss_pred EEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 543 YATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 543 yv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
|+.-.. .+.|.++|+....-..+.. ......+++..++.||+.... .+.|.++|+.+.+-.
T Consensus 182 yv~d~~-----~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d~~~lyva~~~-----~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 182 CWVDAG-----THRAECLNPAQPGRRKVLE--GLQYPFAVTSYGKNLYYTDWK-----TNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEETT-----TTEEEEEETTEEEEEEEEE--CCCSEEEEEEETTEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred EEEECC-----CCEEEEEecCCCceEEEec--CCCCceEEEEeCCEEEEEECC-----CCeEEEEeCCCCCce
Confidence 987532 3578999987643332221 112224556668899997542 357899999876543
No 238
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=88.51 E-value=20 Score=37.21 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=21.1
Q ss_pred ccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe
Q 005735 389 SSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV 425 (680)
Q Consensus 389 ~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~ 425 (680)
...+..+.+++.+++.|+.++ .+.+||..+..
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg-----~v~iw~~~~~~ 61 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGG-----RVVIFQQEQEN 61 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTS-----EEEEEEECC--
T ss_pred cEEEEEECCCCCEEEEEcCCC-----eEEEEEecCCC
Confidence 345667777888889998753 56777766544
No 239
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=88.17 E-value=10 Score=38.22 Aligned_cols=144 Identities=14% Similarity=0.172 Sum_probs=72.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
++..++.|+.+ ..+.+||..+++-... +........++.+ ++.+++.|+.++ .+.+||+....-..
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK-----TIKVWTIKGQCLAT 143 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS-----CEEEEETTSCEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeEEE
Confidence 56677777765 4688999988753221 1111111122222 566777777653 36677776543222
Q ss_pred cccccccccceEEEEE-------CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEec
Q 005735 523 TRSMLQKRFALAAAEL-------NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGG 594 (680)
Q Consensus 523 i~~~p~~r~~~s~~~~-------~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG 594 (680)
+..-.. ....+... ++.+++.|+.++ .+.+||..+.+-...-. .......+++.. ++++++.|+
T Consensus 144 ~~~h~~--~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 144 LLGHND--WVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp ECCCSS--CEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEE
T ss_pred EeccCC--cEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEe
Confidence 211110 01111111 233566666554 57888887754332211 111112223322 677777787
Q ss_pred cCCCCCCCeEEEEeCCCCc
Q 005735 595 FDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 595 ~~~~~~~~~v~~yD~~t~~ 613 (680)
.+ ..+.+||+.+.+
T Consensus 216 ~d-----g~i~iwd~~~~~ 229 (319)
T 3frx_A 216 KD-----GEIMLWNLAAKK 229 (319)
T ss_dssp TT-----CEEEEEETTTTE
T ss_pred CC-----CeEEEEECCCCc
Confidence 65 358889987764
No 240
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=87.53 E-value=40 Score=37.62 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=68.0
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCC---C---cccEEEEECCEEEEEccCCCCcccceE
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGT---K---GSLAGATIDNKIFAIGGGNGLECFSDV 510 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~---r---~~~a~~v~~gkIyV~GG~~~~~~~~~v 510 (680)
.+.++.++.||+.+... .++.+|..++ .|+.-...+.. . ...+.++.+++||+... ...+
T Consensus 62 ~~P~v~~g~vyv~~~~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l 129 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASV 129 (582)
T ss_dssp CCCEEETTEEEEEETTT------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEE
T ss_pred eccEEECCEEEEEcCCC------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEE
Confidence 34466799999987632 3899999876 48765433221 1 11234567899988532 2468
Q ss_pred EEEeCCCcc--EEEccccccc--ccceEEEEECC------EEEEEcCCCC-CCcCceeEEEeCCCCc--EEE
Q 005735 511 EMLDLDIGK--WIRTRSMLQK--RFALAAAELNG------VLYATGGYDG-NEYMNSAERFDPREHY--WTK 569 (680)
Q Consensus 511 e~yD~~t~~--W~~i~~~p~~--r~~~s~~~~~g------~Lyv~GG~~~-~~~~~~v~~yD~~t~~--W~~ 569 (680)
..+|..+++ |+.-..-+.. ....+-++.++ .+|+ |.... ......++.||..+++ |+.
T Consensus 130 ~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 130 VALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 899998875 8753221111 11122234455 6655 32211 1223578999998765 864
No 241
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=87.11 E-value=51 Score=38.39 Aligned_cols=201 Identities=14% Similarity=0.044 Sum_probs=107.1
Q ss_pred eEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC----c-EEECC-CCCCCCccc
Q 005735 415 TLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND----E-WTSRP-SLNGTKGSL 486 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~----~-W~~l~-~lp~~r~~~ 486 (680)
.+..++.....+..+.. ..+...++++. ++.||+.-... ..|+++++... . ...+. .+..+. +.
T Consensus 405 ~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GL 476 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISRDIQAPD-GL 476 (791)
T ss_dssp SEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECSSCSCCC-EE
T ss_pred ceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEecCCCCcc-ee
Confidence 35666666655554432 12333444444 68899886543 45777777642 2 22222 222211 11
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeC
Q 005735 487 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDP 562 (680)
Q Consensus 487 a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~ 562 (680)
+.-..+++||+... ....|+++++....-..+. .+..+ ..+++- ++.||+.--. ....|+++++
T Consensus 477 AvD~~~~~LY~tD~-----~~~~I~v~~ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g----~~~~I~~~~~ 544 (791)
T 3m0c_C 477 AVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----TPAKIKKGGL 544 (791)
T ss_dssp EEETTTTEEEEEET-----TTTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----SSCEEEEEET
T ss_pred eeeecCCcEEEEec-----CCCeEEEEeCCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCC----CCCeEEEEec
Confidence 22223679999853 2357899999876544442 22222 233332 5889987411 1247888988
Q ss_pred CCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc-CCCCCCccceEEEEECCEEEEE
Q 005735 563 REHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG-EPMKLSRGYLGAAVVKEAIYVI 639 (680)
Q Consensus 563 ~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v-~~lp~~R~~~s~v~~~~~lyV~ 639 (680)
....-+.+..-. -..-.++++- +++||+.... ...|+.+|+....-..+ .....-....++++.+++||+.
T Consensus 545 dG~~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwt 618 (791)
T 3m0c_C 545 NGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 618 (791)
T ss_dssp TSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEE
T ss_pred CCCceEEEEeCC-CCCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEE
Confidence 765444443211 1122344443 7899998642 36799999876543333 2211112335677788899887
Q ss_pred ec
Q 005735 640 GG 641 (680)
Q Consensus 640 GG 641 (680)
-.
T Consensus 619 D~ 620 (791)
T 3m0c_C 619 DI 620 (791)
T ss_dssp ET
T ss_pred EC
Confidence 53
No 242
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=86.95 E-value=9.7 Score=45.65 Aligned_cols=199 Identities=16% Similarity=0.077 Sum_probs=102.8
Q ss_pred EEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC---------CccceEEEE--ECCEEEEEecCCCCCccce
Q 005735 394 HLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS---------ARSYASAAM--LNGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 394 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~---------~R~~~s~v~--~~~~IyV~GG~~~~~~~~~ 462 (680)
.+.+++..++++. ...++.+|........+..-.. .....+++. -+++.++++. ...
T Consensus 251 ~~SpDG~~la~~~------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~------~~~ 318 (1045)
T 1k32_A 251 HLNTDGRRILFSK------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS------RGQ 318 (1045)
T ss_dssp EEEESSSCEEEEE------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE------TTE
T ss_pred eEcCCCCEEEEEe------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE------cCE
Confidence 4445555555542 2468888886665554432110 011223333 3555444444 236
Q ss_pred EEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEE-EEeCCCccEEEcccccccccceEEEEE--C
Q 005735 463 VESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVE-MLDLDIGKWIRTRSMLQKRFALAAAEL--N 539 (680)
Q Consensus 463 v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve-~yD~~t~~W~~i~~~p~~r~~~s~~~~--~ 539 (680)
+++++..+.....+...+..+....... +++.+++++. ...++ .||..+++...+. ... .....+.+ +
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d~~~~~~~~l~--~~~-~~~~~~~~SpD 389 (1045)
T 1k32_A 319 AFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYDYRTGKAEKFE--ENL-GNVFAMGVDRN 389 (1045)
T ss_dssp EEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEETTTCCEEECC--CCC-CSEEEEEECTT
T ss_pred EEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEECCCCCceEec--CCc-cceeeeEECCC
Confidence 8888888777665533222111222222 6654444432 24677 8899887765554 111 11222223 5
Q ss_pred CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCC-----CCCCCeEEEEeCCCCcE
Q 005735 540 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDG-----SAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 540 g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~-----~~~~~~v~~yD~~t~~W 614 (680)
++.++++..+ ..+++||+.+++-..+..............-+++.+++++.++ ......++++|+.+...
T Consensus 390 G~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 390 GKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp SSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred CCEEEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 6666665543 3789999998887766422211111112222666555554322 11234799999998876
Q ss_pred EEcC
Q 005735 615 MSGE 618 (680)
Q Consensus 615 ~~v~ 618 (680)
..+.
T Consensus 465 ~~l~ 468 (1045)
T 1k32_A 465 FAAT 468 (1045)
T ss_dssp EECS
T ss_pred EEee
Confidence 5554
No 243
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=86.89 E-value=28 Score=35.20 Aligned_cols=199 Identities=13% Similarity=0.033 Sum_probs=109.5
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCC----CcEEE-CC-CCCCCCcc
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAN----DEWTS-RP-SLNGTKGS 485 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t----~~W~~-l~-~lp~~r~~ 485 (680)
..+.++|+.+.....+- +.....++++.. ++.||+..... ..++++++.+ ..... ++ .+..+
T Consensus 10 ~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~~~~~~p--- 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISRDIQAP--- 79 (316)
T ss_dssp SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECSSCSCC---
T ss_pred CeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEeCCCCCc---
Confidence 34788888877655442 222334555554 57999986542 4688898876 22122 11 12222
Q ss_pred cEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEE
Q 005735 486 LAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAER 559 (680)
Q Consensus 486 ~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~ 559 (680)
.+.++ .++.||+.... ...++++|+....-..+. .+..+ ..+++. ++.||+..-.. ...|++
T Consensus 80 ~glavd~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~----~~~I~~ 147 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----PAKIKK 147 (316)
T ss_dssp CEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS----SCEEEE
T ss_pred CEEEEeecCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC----CCeEEE
Confidence 23333 47889998432 357889998765433222 22222 233443 68899875211 247899
Q ss_pred EeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCC-CCCccceEEEEECCEE
Q 005735 560 FDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM-KLSRGYLGAAVVKEAI 636 (680)
Q Consensus 560 yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~l-p~~R~~~s~v~~~~~l 636 (680)
+++....-+.+.... -....++++- +++||+.... ...|+.+|++...-+.+... .......++++.++.|
T Consensus 148 ~~~dG~~~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~l 221 (316)
T 1ijq_A 148 GGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 221 (316)
T ss_dssp EETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEE
T ss_pred EcCCCCCeEEEEECC-CCCceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEE
Confidence 988654444332211 1223445554 6899998643 46799999875433333221 1122345667778888
Q ss_pred EEEe
Q 005735 637 YVIG 640 (680)
Q Consensus 637 yV~G 640 (680)
|+.-
T Consensus 222 y~~d 225 (316)
T 1ijq_A 222 FWTD 225 (316)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=86.75 E-value=3.3 Score=41.51 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=86.7
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
...+..++.||+.. .+ ..+++|| .+++..-...++. ....+.+.. ++.||+... . +++||+..
T Consensus 24 ~~~~d~~g~l~v~t-~~-----~~l~~~d-~~g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~-------~-l~~~d~~g 87 (330)
T 3hxj_A 24 SPILAKNGTIYLGS-SN-----KNLYAIN-TDGSVKWFFKSGE-IIECRPSIGKDGTIYFGSD-------K-VYAINPDG 87 (330)
T ss_dssp CCEECTTSCEECSS-TT-----TTTEEEC-TTSCEEESSCGGG-EEEECCEETTTTEECCSSC-------E-EEEECCCG
T ss_pred CceEccCCeEEEEc-CC-----CEEEEEC-CCCcEEEEEecCC-CcccceEEecCCcEEEecC-------c-EEEECCCC
Confidence 34444577777533 21 2378888 5554322222211 111222332 677776321 2 88898742
Q ss_pred C-cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCC-CccEEEcccccccccceEEEEE-CCEEEEEcC
Q 005735 471 D-EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD-IGKWIRTRSMLQKRFALAAAEL-NGVLYATGG 547 (680)
Q Consensus 471 ~-~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~-t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG 547 (680)
. .|+.. .+... ....++.++.||+... ...+..||+. ...|....+.+ . ..+.+.. ++.||+..
T Consensus 88 ~~~~~~~--~~~~~-~~~~~~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~vgt- 154 (330)
T 3hxj_A 88 TEKWRFD--TKKAI-VSDFTIFEDILYVTSM------DGHLYAINTDGTEKWRFKTKKA--I-YATPIVSEDGTIYVGS- 154 (330)
T ss_dssp GGGGGSC--C------CCEEEETTEEEEECT------TSEEEEECTTSCEEEEEECSSC--C-CSCCEECTTSCEEEEC-
T ss_pred cEEEEEE--CCCCc-ccCceEECCEEEEEec------CCEEEEEcCCCCEEEEEcCCCc--e-eeeeEEcCCCEEEEEc-
Confidence 2 34321 11111 1223344888888532 1357889988 33566543211 1 1222333 67777742
Q ss_pred CCCCCcCceeEEEeCCCC-cEEEeccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCC-CcEEEc
Q 005735 548 YDGNEYMNSAERFDPREH-YWTKIANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRL-GSWMSG 617 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~-~W~~v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t-~~W~~v 617 (680)
.+ ..++.||+... .|..-.. ... ..+.+. .++.||+.. ..++.||... ..|...
T Consensus 155 ~~-----~~l~~~d~~g~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 155 ND-----NYLYAINPDGTEKWRFKTN--DAI-TSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp TT-----SEEEEECTTSCEEEEEECS--SCC-CSCCEECTTCCEEEES--------SSEEEECTTSCEEEEEC
T ss_pred CC-----CEEEEECCCCCEeEEEecC--CCc-eeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEc
Confidence 21 36889998722 2554322 111 122233 266677653 3478888442 346654
No 245
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.69 E-value=6.9 Score=43.19 Aligned_cols=203 Identities=15% Similarity=0.064 Sum_probs=97.8
Q ss_pred eEEEcCCCEEEEEecC-CCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeC--
Q 005735 392 ELHLDPSESIYLVGGC-DGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSP-- 468 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~-~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~-- 468 (680)
.....++++.+++++. ++ .+.+|+..++.-+++...+.. ...+.+...+++...+...+......+|..+.
T Consensus 26 ~~~~~~DG~~la~~s~~~g-----~~~lw~~~~g~~~~lt~~~~~-~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEG-----SVNAYLYDGGETVKLNREPIN-SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EEEEEETTTEEEEEEEETT-----EEEEEEEETTEEEECCSSCCS-EECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred eeecCCCCCeEEEEEccCC-----ceeEEEEcCCCcEeeeccccc-ccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 3344456655666553 22 244455555665555432211 11111111235554444322222345777777
Q ss_pred CCCcEEECCCCCCCCcccEEEEECC-EEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcC
Q 005735 469 ANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG 547 (680)
Q Consensus 469 ~t~~W~~l~~lp~~r~~~a~~v~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG 547 (680)
....- .+......+ ..+...++ .+++..+..+ .+.+||+.+++-..+...+. ......-+|+.+++++
T Consensus 100 ~g~~~-~l~~~~~~~--~~~~s~dg~~~~~~s~~~~-----~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMR--ILSGVDTGEAVVFTGATED-----RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TTCCE-ECTTSCSBE--EEEEEECSSCEEEEEECSS-----CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred CCccc-cccCCCCce--eeeeCCCCCeEEEEecCCC-----CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence 44332 333322212 23344454 3444443322 23378988887666543332 2222233566555544
Q ss_pred CCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 548 YDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.+... ...++++|+.+++++.+...+. .....+.. +|+.++.+..++ ...++++|++++....+
T Consensus 169 ~~~~~-~~~i~~~d~~~g~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~~~ 233 (582)
T 3o4h_A 169 FFGGG-RVSLFTSNLSSGGLRVFDSGEG--SFSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVEDL 233 (582)
T ss_dssp EEETT-EEEEEEEETTTCCCEEECCSSC--EEEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEEEC
T ss_pred EcCCC-CeEEEEEcCCCCCceEeecCCC--ccccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEEEc
Confidence 33211 1359999999998887743221 11222222 565444433222 24689999998887743
No 246
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=86.66 E-value=31 Score=37.32 Aligned_cols=224 Identities=13% Similarity=0.135 Sum_probs=108.2
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
...+.+++..++.|+.++ .+..+|........+..... ...+++.. +++.++.|+.++ .+.+||...
T Consensus 308 ~~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg-----~v~~~~~~~ 375 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDK-----TVKLWNRNGQHLQTLTGHSS--SVWGVAFSPDGQTIASASDDK-----TVKLWNRNG 375 (577)
T ss_dssp EEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTS-----EEEEEETTC
T ss_pred EEEECCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEeCCCC--CEEEEEECCCCCEEEEEeCCC-----EEEEEcCCC
Confidence 345566777777777543 46677877666555432211 11222222 566777776543 467787654
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE-CCEEEEEcC
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGG 547 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG 547 (680)
.....+... .....++.+ +++.++.|+.+ ..+.+||.....-..+...... ..+++.. ++++++.++
T Consensus 376 ~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 376 QLLQTLTGH---SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSS--VWGVAFSPDDQTIASAS 445 (577)
T ss_dssp CEEEEEECC---SSCEEEEEECTTSSCEEEEETT-----SEEEEECTTCCEEEEEECCSSC--EEEEEECTTSSEEEEEE
T ss_pred CEEEEecCC---CCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCCC--eEEEEECCCCCEEEEEc
Confidence 433332211 111122222 56666766644 3466777543322222111111 1112222 566777776
Q ss_pred CCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccc
Q 005735 548 YDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGY 626 (680)
Q Consensus 548 ~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~ 626 (680)
.++ .+.+||.....-..+... .....+++.. ++++++.|+.+ ..+.+||.....-..+..-. ..-
T Consensus 446 ~d~-----~v~~w~~~~~~~~~~~~~--~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~~~~~h~--~~v 511 (577)
T 2ymu_A 446 DDK-----TVKLWNRNGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS--SSV 511 (577)
T ss_dssp TTS-----EEEEEETTSCEEEEEECC--SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEEEEECCS--SCE
T ss_pred CCC-----EEEEEECCCCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEEEEeCCC--CCE
Confidence 553 577888765444433321 1122223322 67777777754 35788886544333332111 111
Q ss_pred eEEEEE-CCEEEEEecccCCCcccceEEEEcC
Q 005735 627 LGAAVV-KEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 627 ~s~v~~-~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
.+++.. ++++++.||.++ .+.+|+.
T Consensus 512 ~~l~~s~dg~~l~s~~~dg------~v~lwd~ 537 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDK------TVKLWNR 537 (577)
T ss_dssp EEEEECTTSSCEEEEETTS------EEEEECT
T ss_pred EEEEEcCCCCEEEEEECcC------EEEEEeC
Confidence 122222 566666666543 3555553
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=86.25 E-value=15 Score=36.41 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=95.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCC-CCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC-CcEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPS-CDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPAN-DEWT 474 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~-t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t-~~W~ 474 (680)
++.||+... + ..++.||+. ...|......+ ...+.+.. ++.||+.. .. ..++.||+.. ..|.
T Consensus 107 ~~~l~v~t~-~-----~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt-~~-----~~l~~~d~~g~~~~~ 171 (330)
T 3hxj_A 107 EDILYVTSM-D-----GHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGS-ND-----NYLYAINPDGTEKWR 171 (330)
T ss_dssp TTEEEEECT-T-----SEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEEC-TT-----SEEEEECTTSCEEEE
T ss_pred CCEEEEEec-C-----CEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEc-CC-----CEEEEECCCCCEeEE
Confidence 677776432 1 358899988 33465443221 12223334 67777633 21 3588899872 2365
Q ss_pred ECCCCCCCCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCC-ccEEEcccccccccceEEEEE-CCEEEEEcCCCCC
Q 005735 475 SRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDI-GKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGN 551 (680)
Q Consensus 475 ~l~~lp~~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t-~~W~~i~~~p~~r~~~s~~~~-~g~Lyv~GG~~~~ 551 (680)
.... .... .+.+. -++.||+.. ..+.+||... ..|...... .. ..+.+.. ++.||+... +
T Consensus 172 ~~~~--~~~~-~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~-~-- 234 (330)
T 3hxj_A 172 FKTN--DAIT-SAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSL-D-- 234 (330)
T ss_dssp EECS--SCCC-SCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEET-T--
T ss_pred EecC--CCce-eeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcC-C--
Confidence 4322 1111 12223 367788753 4577888432 346554221 11 1122233 457877531 1
Q ss_pred CcCceeEEEeCCCCc-EEEeccCCCCCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCC-cEEEcCCCCCCccceE
Q 005735 552 EYMNSAERFDPREHY-WTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG-SWMSGEPMKLSRGYLG 628 (680)
Q Consensus 552 ~~~~~v~~yD~~t~~-W~~v~~~p~~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~-~W~~v~~lp~~R~~~s 628 (680)
..+++||+.... |..-.... .. .+.+.. ++.||+... ...+++||+... .|..- ++.. ...+
T Consensus 235 ---~gl~~~~~~g~~~~~~~~~~~--~~-~~~~~~~~g~l~v~t~------~ggl~~~d~~g~~~~~~~--~~~~-~~~~ 299 (330)
T 3hxj_A 235 ---GHLYAINPDGTEKWRFKTGKR--IE-SSPVIGNTDTIYFGSY------DGHLYAINPDGTEKWNFE--TGSW-IIAT 299 (330)
T ss_dssp ---TEEEEECTTSCEEEEEECSSC--CC-SCCEECTTSCEEEECT------TCEEEEECTTSCEEEEEE--CSSC-CCSC
T ss_pred ---CeEEEECCCCCEeEEeeCCCC--cc-ccceEcCCCeEEEecC------CCCEEEECCCCcEEEEEE--cCCc-cccc
Confidence 357788765443 54332111 11 122233 577776432 135889997433 45532 2221 1223
Q ss_pred EEE-ECCEEEEEecc
Q 005735 629 AAV-VKEAIYVIGGV 642 (680)
Q Consensus 629 ~v~-~~~~lyV~GG~ 642 (680)
++. -+++||+ |+.
T Consensus 300 ~~~d~~g~l~~-gt~ 313 (330)
T 3hxj_A 300 PVIDENGTIYF-GTR 313 (330)
T ss_dssp CEECTTCCEEE-ECT
T ss_pred eEEcCCCEEEE-EcC
Confidence 333 4677776 443
No 248
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=86.16 E-value=27 Score=34.26 Aligned_cols=191 Identities=10% Similarity=0.092 Sum_probs=98.5
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC---ccceEEEEE-CCEEEEE----ecCC-------
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA---RSYASAAML-NGELYIF----GGGD------- 455 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~---R~~~s~v~~-~~~IyV~----GG~~------- 455 (680)
....+.+++.+|+.... ...+.+||+.+++...+...... .....++.. ++.+|+. |...
T Consensus 72 ~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 72 NGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp EEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred ceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 45566667888776532 13589999988887766322111 111223322 6788886 3311
Q ss_pred -CCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCC-CccE-EEcc--cccc
Q 005735 456 -GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLD-IGKW-IRTR--SMLQ 528 (680)
Q Consensus 456 -~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~-t~~W-~~i~--~~p~ 528 (680)
.......++.||+. ++...+..- ........+ ++++++.+.. ...+++||+. +++. .... ....
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~ 217 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTLSAPIRD---RVKPNGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHFTVEP 217 (296)
T ss_dssp CCCSSSCEEEEECTT-SCEEEEECC---CSSEEEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEECCSS
T ss_pred cccCCCcEEEEECCC-CCEEEeecC---CCCCccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEeeCCC
Confidence 01112478999987 555443211 111122223 5666654332 2468888886 5554 2111 1111
Q ss_pred cccceEEEE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--C-CEEEEEeccCCCCCCCeE
Q 005735 529 KRFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--N-GKLYALGGFDGSAMVPSI 604 (680)
Q Consensus 529 ~r~~~s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~-~~IyviGG~~~~~~~~~v 604 (680)
.. ...++. -+|+||+.. + ..+.+||+.......+. .+.. ...++.- + +.||+... ..+
T Consensus 218 ~~-p~~i~~d~~G~l~v~~--~-----~~v~~~~~~g~~~~~~~-~~~~--~~~~~f~~~d~~~L~v~t~-------~~l 279 (296)
T 3e5z_A 218 GK-TDGLRVDAGGLIWASA--G-----DGVHVLTPDGDELGRVL-TPQT--TSNLCFGGPEGRTLYMTVS-------TEF 279 (296)
T ss_dssp SC-CCSEEEBTTSCEEEEE--T-----TEEEEECTTSCEEEEEE-CSSC--CCEEEEESTTSCEEEEEET-------TEE
T ss_pred CC-CCeEEECCCCCEEEEc--C-----CeEEEECCCCCEEEEEE-CCCC--ceeEEEECCCCCEEEEEcC-------CeE
Confidence 11 112222 267888876 1 46899999755444443 2322 2222221 2 35676542 368
Q ss_pred EEEeCCCCc
Q 005735 605 EVYDPRLGS 613 (680)
Q Consensus 605 ~~yD~~t~~ 613 (680)
+.|+++++.
T Consensus 280 ~~~~~~~~~ 288 (296)
T 3e5z_A 280 WSIETNVRG 288 (296)
T ss_dssp EEEECSCCB
T ss_pred EEEEccccc
Confidence 899987754
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=85.94 E-value=48 Score=36.96 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCEEEEEecCCCCcccCeEEEEeCCCCe--EEEcCCCCCC---c---cceEEEEECCEEEEEecCCCCCccceEEEEeC
Q 005735 397 PSESIYLVGGCDGDSWLSTLELYLPSCDV--IKTLKPMSSA---R---SYASAAMLNGELYIFGGGDGNSWHNTVESYSP 468 (680)
Q Consensus 397 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~mp~~---R---~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~ 468 (680)
.++.||+.+.. ..++.+|..+++ |+.-...+.. . ...+.++.++.||+... ...++.+|.
T Consensus 67 ~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~ 134 (582)
T 1flg_A 67 SDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNK 134 (582)
T ss_dssp ETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEES
T ss_pred ECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEEC
Confidence 38888887763 238999998774 8765433221 1 12344567899988542 236899999
Q ss_pred CCCc--EEECCCCCCC--CcccEEEEECC------EEEEEccCCCCcccceEEEEeCCCcc--EEE
Q 005735 469 ANDE--WTSRPSLNGT--KGSLAGATIDN------KIFAIGGGNGLECFSDVEMLDLDIGK--WIR 522 (680)
Q Consensus 469 ~t~~--W~~l~~lp~~--r~~~a~~v~~g------kIyV~GG~~~~~~~~~ve~yD~~t~~--W~~ 522 (680)
.|++ |+.-..-+.. ....+-++.++ .||+-...........+..||+.+++ |+.
T Consensus 135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 8874 8653221111 11122344566 66663221111124578999999875 864
No 250
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=85.87 E-value=31 Score=34.72 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=96.4
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCc--cEEEcccc------cccc
Q 005735 461 NTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIG--KWIRTRSM------LQKR 530 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~--~W~~i~~~------p~~r 530 (680)
..+.++|+.+++....... ..........+ +|+||+.+.. ...+.+||+... .-..+... ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-NLFYLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-TTCSSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred CcEEEEECCCCeEEeccCC-CccCCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 3699999988775432111 11112223333 6789988643 246889998765 22222211 1111
Q ss_pred cceE-EEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCC-------C-CceeEEEEE-C-CEEEEEeccCC
Q 005735 531 FALA-AAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR-------R-RGCHSLAVL-N-GKLYALGGFDG 597 (680)
Q Consensus 531 ~~~s-~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~-------~-r~~~s~v~~-~-~~IyviGG~~~ 597 (680)
..+. +++. ++.||+..++. ...|.+||+....-..+..... . ...+.+++- + +.||+....
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-- 216 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-- 216 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--
T ss_pred CCCcEEEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--
Confidence 2233 3333 57899987521 2478899965544444432111 1 112344444 4 899998753
Q ss_pred CCCCCeEEEEeCCCCcEEE-cCCCCCCccceEEEEECCEEEEEecccCC-CcccceEEEEcCC
Q 005735 598 SAMVPSIEVYDPRLGSWMS-GEPMKLSRGYLGAAVVKEAIYVIGGVKNG-SEIVDTVERFKEG 658 (680)
Q Consensus 598 ~~~~~~v~~yD~~t~~W~~-v~~lp~~R~~~s~v~~~~~lyV~GG~~~~-~~~~~~ve~y~~~ 658 (680)
...|.+||+.+.+... +..........+++...+.+|+..|...- ......+.+|+..
T Consensus 217 ---~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 217 ---NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp ---TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred ---CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence 3579999998666544 32222223333444445677777664321 1123467777754
No 251
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=85.59 E-value=45 Score=36.26 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=75.3
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEc----CCCCCCccceEEEEE-CCEEEEEecCCCCCccceEE
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTL----KPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l----~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~ 464 (680)
+.+++....+.+|+|=|. .+|+. ..+....+ +.+|. ... ++... ++++|+|=| +.+|
T Consensus 58 fDAit~~~~G~~yfFkg~-------~~Wr~--~~~~p~~I~~~Wp~LP~-~ID-Aa~~~~~g~~yfFkG-------~~yW 119 (460)
T 1qhu_A 58 FDATTLDDNGTMLFFKDE-------FVWKS--HRGIRELISERWKNFIG-PVD-AAFRHGHTSVYLIKG-------DKVW 119 (460)
T ss_dssp CSEEEECTTSCEEEEETT-------EEEET--TTTEEEEHHHHSTTCCS-CCS-EEEEETTTEEEEEET-------TEEE
T ss_pred EeEEEECCCCcEEEEeCC-------EEEEe--CCCCceehhhhhccCCC-ccc-eEEEeCCCcEEEEec-------cEEE
Confidence 455655556888888873 23332 22223333 23332 222 23233 589999987 4578
Q ss_pred EEeCCCCc--E-EEC----CCCCCCCcccEEEEE------CCEEEEEccCCCCcccceEEEEeCCCccEEEc--cccccc
Q 005735 465 SYSPANDE--W-TSR----PSLNGTKGSLAGATI------DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT--RSMLQK 529 (680)
Q Consensus 465 vyD~~t~~--W-~~l----~~lp~~r~~~a~~v~------~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i--~~~p~~ 529 (680)
+|+..... + +.+ +.+|. .--|+... ++++|+|-| +..+.||..+++.... +.+|.
T Consensus 120 ~~~~~~~~~GYPk~I~~~fpGlp~--~IDAA~~~~~~~~~~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~~- 189 (460)
T 1qhu_A 120 VYTSEKNEKVYPKSLQDEFPGIPF--PLDAAVECHRGECQDEGILFFQG-------NRKWFWDLTTGTKKERSWPAVGN- 189 (460)
T ss_dssp EECC-------CEEHHHHSTTCCS--SCCEEEEECBBTBSSSEEEEEET-------TEEEEEETTTTEEEEECCTTSCC-
T ss_pred EEeCCcccCCCCeEhhhccCCCCC--CeeEEEECCccCCCCCeEEEEec-------ccEEEEecccceeecccCCCCCc-
Confidence 88643210 0 011 22331 11233322 678888876 4578899888765432 23332
Q ss_pred ccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 530 RFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 530 r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
.-++...++++|+|-| +..++||..+.
T Consensus 190 --iDAA~~~~g~~YfFkG-------~~y~rfd~~~~ 216 (460)
T 1qhu_A 190 --CTSALRWLGRYYCFQG-------NQFLRFNPVSG 216 (460)
T ss_dssp --CSEEEEETTEEEEEET-------TEEEEECTTTC
T ss_pred --cchheeeCCceEEEEC-------CEEEEEcCccC
Confidence 3455666899999977 35678887554
No 252
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=85.21 E-value=34 Score=34.54 Aligned_cols=143 Identities=14% Similarity=0.046 Sum_probs=76.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR 524 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~ 524 (680)
++.+|+++... ..+++||+.+++..... .+. .....+..-++++|+... ..+..||+.+++...+.
T Consensus 60 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~-~~~-~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 60 SGTAWWFNILE-----RELHELHLASGRKTVHA-LPF-MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp TTEEEEEEGGG-----TEEEEEETTTTEEEEEE-CSS-CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEE-CCC-cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEe
Confidence 36788876542 46899999988765442 121 111112223788887641 34889999999887664
Q ss_pred ccccc--ccceEEEEE--CCEEEEEcCC-CCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CC-EEEEEeccCC
Q 005735 525 SMLQK--RFALAAAEL--NGVLYATGGY-DGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDG 597 (680)
Q Consensus 525 ~~p~~--r~~~s~~~~--~g~Lyv~GG~-~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~-~IyviGG~~~ 597 (680)
..+.. ........+ +|++|+.... ........++++| +++.+.+..- ......++.. ++ .||+....
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg~~lyv~~~~-- 199 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTK-- 199 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTSCEEEEEETT--
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCCCEEEEEECC--
Confidence 33221 111222222 6778774321 1111234788998 5666554211 0112233333 44 57776432
Q ss_pred CCCCCeEEEEeCC
Q 005735 598 SAMVPSIEVYDPR 610 (680)
Q Consensus 598 ~~~~~~v~~yD~~ 610 (680)
...|++||..
T Consensus 200 ---~~~I~~~d~~ 209 (326)
T 2ghs_A 200 ---VNRLMRVPLD 209 (326)
T ss_dssp ---TCEEEEEEBC
T ss_pred ---CCEEEEEEcc
Confidence 3578999875
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=85.05 E-value=38 Score=34.91 Aligned_cols=199 Identities=14% Similarity=0.026 Sum_probs=112.2
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCC--CCCCCcccEEE
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS--LNGTKGSLAGA 489 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~--lp~~r~~~a~~ 489 (680)
..+.++++.......+.. ......+++.. ++.||+.--.. ..++++++.....+.+.. +..+ .+.+
T Consensus 53 ~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~~~~~~~~~~~~p---~gla 122 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSNVEEVVSTGLESP---GGLA 122 (349)
T ss_dssp SCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCSCC---CEEE
T ss_pred cceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccC-----CceEEEecCCCCceEEEeCCCCCc---cEEE
Confidence 347888888776665532 12223444443 58899875432 468899988765444321 2211 2233
Q ss_pred E--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCC
Q 005735 490 T--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPR 563 (680)
Q Consensus 490 v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~ 563 (680)
+ .++.||+.... ...++++++....-..+. .+..+ ..+++- ++.||+.--.. ...|+++++.
T Consensus 123 vd~~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~----~~~I~r~~~d 190 (349)
T 3v64_C 123 VDWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMD 190 (349)
T ss_dssp EETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred EecCCCeEEEEcCC-----CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC----CCEEEEEeCC
Confidence 3 37889998542 357888988765433322 22222 233443 68899874321 2578999887
Q ss_pred CCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEec
Q 005735 564 EHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGG 641 (680)
Q Consensus 564 t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~GG 641 (680)
...-+.+..-. -....++++- +++||+.... ...|+.+|+....-..+.... .....++++.++.||+.-.
T Consensus 191 G~~~~~~~~~~-~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 191 GSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp SCSCEESCCSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEET
T ss_pred CCCcEEEEECC-CCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecC
Confidence 65444432211 1122345543 7889998642 357999998754333322111 1234566668899998853
No 254
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=85.03 E-value=23 Score=35.26 Aligned_cols=195 Identities=12% Similarity=0.009 Sum_probs=96.0
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCcEEEC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSR 476 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l 476 (680)
++.||+.+..+ ..+++|++. +....+... . ....+++.. +++||+..... ..+.+||+. ++.+.+
T Consensus 56 g~~l~~~d~~~-----~~i~~~~~~-g~~~~~~~~-~-~~~~gl~~d~dG~l~v~~~~~-----~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 56 QRTLVWSDLVG-----RRVLGWRED-GTVDVLLDA-T-AFTNGNAVDAQQRLVHCEHGR-----RAITRSDAD-GQAHLL 121 (305)
T ss_dssp GTEEEEEETTT-----TEEEEEETT-SCEEEEEES-C-SCEEEEEECTTSCEEEEETTT-----TEEEEECTT-SCEEEE
T ss_pred CCEEEEEECCC-----CEEEEEeCC-CCEEEEeCC-C-CccceeeECCCCCEEEEECCC-----CEEEEECCC-CCEEEE
Confidence 44577766432 358888884 444433211 1 112233332 67788764321 358888886 556554
Q ss_pred CCCCC----CCcccEEEEECCEEEEE----ccCCC--------CcccceEEEEeCCCccEEEcccccccccceEEEEE-C
Q 005735 477 PSLNG----TKGSLAGATIDNKIFAI----GGGNG--------LECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-N 539 (680)
Q Consensus 477 ~~lp~----~r~~~a~~v~~gkIyV~----GG~~~--------~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~ 539 (680)
..... .+....++.-+|.||+. |-... ......++.||+.++++..+..+ .....++.. +
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~---~~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADL---DHPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEE---SSEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecC---CCCcceEEcCC
Confidence 32111 11112222237889985 32110 01135689999988887765411 111222322 3
Q ss_pred C-EEEEEcCCCCCCcCceeEEEeCCCCcEEE---eccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 540 G-VLYATGGYDGNEYMNSAERFDPREHYWTK---IANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 540 g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~---v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
+ .||+............+++||...+.... +...+. .....++. -++.||+..+ ..|.+||++...-
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~ 270 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD-GLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLL 270 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS-SCCCSEEECTTSCEEECCS-------SEEEEECTTSCEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC-CCCCeEEECCCCCEEEecC-------CcEEEECCCCCEE
Confidence 4 58876432111112478899887654221 111111 11112232 2566777542 3589999976655
Q ss_pred EEc
Q 005735 615 MSG 617 (680)
Q Consensus 615 ~~v 617 (680)
..+
T Consensus 271 ~~~ 273 (305)
T 3dr2_A 271 GHI 273 (305)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 255
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.75 E-value=19 Score=34.37 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=79.2
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCC--cEE--EC----CCCCCCCcccEEEEE--CCEEEEEccCCCCcccce
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWT--SR----PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSD 509 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~--~l----~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ 509 (680)
+++.+++++|+|=|. .+|+++.... ... .+ +.+|. .--|+... ++++|+|-| +.
T Consensus 11 Ai~~~~g~~yfFkg~-------~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG-------KYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEETT-------EEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET-------TE
T ss_pred EEEEeCCEEEEEECC-------EEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC-------CE
Confidence 456679999999883 4777776542 221 11 23442 11223332 678999976 34
Q ss_pred EEEEeCCCccE-EEccc--ccc--cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEE-----Eec-cCC-CCC
Q 005735 510 VEMLDLDIGKW-IRTRS--MLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWT-----KIA-NMN-RRR 577 (680)
Q Consensus 510 ve~yD~~t~~W-~~i~~--~p~--~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~-----~v~-~~p-~~r 577 (680)
.++|+..+..- ..+.. +|. ....++....++++|+|-| +..|+||..+++-. .+. ..+ .+.
T Consensus 75 yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~ 147 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVPL 147 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSCS
T ss_pred EEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCCCCC
Confidence 56666442111 01111 222 1223333323789999966 36799998765421 111 111 122
Q ss_pred ceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 578 GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 578 ~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
...++...++.+|.+-| +..+.||..+..
T Consensus 148 ~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~ 176 (195)
T 1itv_A 148 DTHDVFQFREKAYFCQD-------RFYWRVSSRSEL 176 (195)
T ss_dssp SCSEEEEETTEEEEEET-------TEEEEEECCTTC
T ss_pred CCCEEEEeCCeEEEEeC-------CEEEEEECCccE
Confidence 33455566899999977 457888887654
No 256
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=84.18 E-value=17 Score=40.87 Aligned_cols=80 Identities=13% Similarity=-0.001 Sum_probs=46.3
Q ss_pred ceEEEcCCCEEEEEecCCCC----cccCeEEEEeCCCCeEEEcCCCCCCc--cceEEEEECCEEEEEecCCCCCccceEE
Q 005735 391 DELHLDPSESIYLVGGCDGD----SWLSTLELYLPSCDVIKTLKPMSSAR--SYASAAMLNGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~----~~~~~v~~yd~~t~~W~~l~~mp~~R--~~~s~v~~~~~IyV~GG~~~~~~~~~v~ 464 (680)
....+.++++.++++..+.. .....++++|..+++...+....... .......-+++.++++.. ..++
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i~ 137 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNIY 137 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEEE
T ss_pred ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------CeEE
Confidence 45667778887777765322 22478999999988776665433211 111111225555555443 3688
Q ss_pred EEeCCCCcEEEC
Q 005735 465 SYSPANDEWTSR 476 (680)
Q Consensus 465 vyD~~t~~W~~l 476 (680)
++|..+++...+
T Consensus 138 ~~~~~~g~~~~~ 149 (723)
T 1xfd_A 138 YCAHVGKQAIRV 149 (723)
T ss_dssp EESSSSSCCEEE
T ss_pred EEECCCCceEEE
Confidence 888877655444
No 257
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=84.15 E-value=31 Score=33.19 Aligned_cols=144 Identities=20% Similarity=0.204 Sum_probs=78.2
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCCcEE--EC----CCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEE
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT--SR----PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVE 511 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~--~l----~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve 511 (680)
+++...+++|+|=|. .+|+++.....+. .+ +.+|. .-. |+... ++++|+|-| +.++
T Consensus 28 Ai~~~~g~~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKDR-------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEEETTEEEEEETT-------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEECC-------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-------CEEE
Confidence 455679999999873 4677765443321 11 23332 122 23323 589999976 3455
Q ss_pred EEeCCCccE---EEccc--cccc-ccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-----e----ccCC
Q 005735 512 MLDLDIGKW---IRTRS--MLQK-RFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTK-----I----ANMN 574 (680)
Q Consensus 512 ~yD~~t~~W---~~i~~--~p~~-r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-----v----~~~p 574 (680)
+|+..+-.- ..+.. +|.. ..--++... ++++|+|-| +..|+||..+++-.. + +.+|
T Consensus 92 ~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~Gip 164 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIG 164 (207)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCCCCC
Confidence 665322110 12222 2221 111222232 589999976 468999987643211 1 1122
Q ss_pred CCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 575 RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 575 ~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
....++...++++|.+-| +..|.||..+++=.
T Consensus 165 --~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 165 --DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 196 (207)
T ss_dssp --SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred --CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence 223344456999999977 45789998776543
No 258
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=83.92 E-value=5.5 Score=45.04 Aligned_cols=103 Identities=11% Similarity=-0.049 Sum_probs=53.9
Q ss_pred eEEEEeCCCCeEEEcCCCCCCc--cceEEEE-ECCEEEEEecCCCC----CccceEEEEeCCCCcEEECCCCCCCC--cc
Q 005735 415 TLELYLPSCDVIKTLKPMSSAR--SYASAAM-LNGELYIFGGGDGN----SWHNTVESYSPANDEWTSRPSLNGTK--GS 485 (680)
Q Consensus 415 ~v~~yd~~t~~W~~l~~mp~~R--~~~s~v~-~~~~IyV~GG~~~~----~~~~~v~vyD~~t~~W~~l~~lp~~r--~~ 485 (680)
.++++|..+++-..+-...... ...+.+. -+++.++++..... .....++++|..+++-+.+....... ..
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 117 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ 117 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc
Confidence 6888898887655443222110 1122222 26666666654322 22468999999988766554432211 11
Q ss_pred cEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEc
Q 005735 486 LAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 523 (680)
Q Consensus 486 ~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i 523 (680)
..+..-+|+.++++.. ..++++|..+++...+
T Consensus 118 ~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 118 YAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRV 149 (723)
T ss_dssp BCCBCSSTTCEEEEET------TEEEEESSSSSCCEEE
T ss_pred ccEECCCCCEEEEEEC------CeEEEEECCCCceEEE
Confidence 1222225554444332 3677778777665444
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=83.73 E-value=56 Score=37.54 Aligned_cols=206 Identities=14% Similarity=0.018 Sum_probs=99.4
Q ss_pred ceEEEc-CCCEEEEEecCCCCcccCeEEEEeCCCC-eEEEcCCCCCCccceEEEEE-CC-EEEEEecCCCCCccceEEEE
Q 005735 391 DELHLD-PSESIYLVGGCDGDSWLSTLELYLPSCD-VIKTLKPMSSARSYASAAML-NG-ELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~-~~~~Iyv~GG~~~~~~~~~v~~yd~~t~-~W~~l~~mp~~R~~~s~v~~-~~-~IyV~GG~~~~~~~~~v~vy 466 (680)
....+. ++++.++++-..+......++++|..++ .. ++.. ........+.. ++ .||... .+.......++++
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~-~~~~~~~~~WspDg~~l~y~~-~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADK-VSGTNGEIVWGPDHTSLFYVT-KDETLRENKVWRH 252 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCC-EEEECSCCEECSSTTEEEEEE-ECTTCCEEEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcc-ccCceeeEEEecCCCEEEEEE-ECCCCCCCEEEEE
Confidence 345666 7777666654332233346999999887 52 1110 11111111211 33 444432 2212222467888
Q ss_pred eCCCCcE--EECCCCCCCCcccEEEE-ECCE-EEEEccCCCCcccceEEEEeCCCc--cE--EEccccc-ccccceEEE-
Q 005735 467 SPANDEW--TSRPSLNGTKGSLAGAT-IDNK-IFAIGGGNGLECFSDVEMLDLDIG--KW--IRTRSML-QKRFALAAA- 536 (680)
Q Consensus 467 D~~t~~W--~~l~~lp~~r~~~a~~v-~~gk-IyV~GG~~~~~~~~~ve~yD~~t~--~W--~~i~~~p-~~r~~~s~~- 536 (680)
+..+..- ..+-.-+.......... -+++ |++..... ..+.++.+|+.+. .+ ..+.+-. ...+ ...
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~--s~~~ 327 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---ETAEVHLLDLRKGNAHNTLEIVRPREKGVRY--DVQM 327 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---SCEEEEEEESSSCTTCCCEEESSCCCTTCCE--EEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---CCceEEEEECCCCCCCceeEEeecCCCCceE--EEee
Confidence 7766421 11100011122222222 2555 44333211 2467889999875 46 5543211 1111 111
Q ss_pred EECCEEEEEcCCCCCCcCceeEEEeCCC-CcEEE-eccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeC
Q 005735 537 ELNGVLYATGGYDGNEYMNSAERFDPRE-HYWTK-IANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDP 609 (680)
Q Consensus 537 ~~~g~Lyv~GG~~~~~~~~~v~~yD~~t-~~W~~-v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~ 609 (680)
..++.||+....++ .....++.+|..+ ..|+. +-..............++.|++....++ ...++++|+
T Consensus 328 ~~g~~l~~~t~~~~-a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g---~~~l~~~dl 398 (751)
T 2xe4_A 328 HGTSHLVILTNEGG-AVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG---LTRIWTMMA 398 (751)
T ss_dssp ETTTEEEEEECTTT-CTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT---EEEEEEEEC
T ss_pred eeCCEEEEEeCCCC-CCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC---EEEEEEEec
Confidence 22778888865431 1234789999876 67876 4222211122233344777777765443 356888886
No 260
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=81.24 E-value=58 Score=34.26 Aligned_cols=200 Identities=14% Similarity=0.011 Sum_probs=109.0
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC-----cEEECCCCCCCCccc
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND-----EWTSRPSLNGTKGSL 486 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~-----~W~~l~~lp~~r~~~ 486 (680)
..+.++++....+..+.+ ......+++.. ++.||+.--.. ..++++++... ....+... ...-.
T Consensus 92 ~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~~~~--~~~p~ 162 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISRD--IQAPD 162 (400)
T ss_dssp TEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEECSS--CSCEE
T ss_pred ceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEEeCC--CCCcc
Confidence 457788887776655532 22334455554 68999875432 45888887642 12222211 11112
Q ss_pred EEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcc--cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEE
Q 005735 487 AGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERF 560 (680)
Q Consensus 487 a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~y 560 (680)
+.++ .++.||+.... ...++++|++...-..+. .+..| ..+++- ++.||+.--.. ...|+++
T Consensus 163 glavD~~~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~~----~~~I~~~ 230 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----PAKIKKG 230 (400)
T ss_dssp EEEEETTTTEEEEEETT-----TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECSS----SCCEEEE
T ss_pred cEEEEecCCceEEEECC-----CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCCC----CCEEEEE
Confidence 2333 37899998542 357889998876544432 22222 233333 68899874211 2468888
Q ss_pred eCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCC-CCCccceEEEEECCEEE
Q 005735 561 DPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM-KLSRGYLGAAVVKEAIY 637 (680)
Q Consensus 561 D~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~l-p~~R~~~s~v~~~~~ly 637 (680)
++....-+.+..-. -....++++- +++||+.... ...|+.+|++...-..+... ..-....++++.++.||
T Consensus 231 ~~dG~~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~ly 304 (400)
T 3p5b_L 231 GLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 304 (400)
T ss_dssp ETTSCSCEEEECSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEE
T ss_pred eCCCCccEEEEECC-CCceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEE
Confidence 88654333332111 1122345544 6889998643 46799999876543333221 11223457777889999
Q ss_pred EEe
Q 005735 638 VIG 640 (680)
Q Consensus 638 V~G 640 (680)
+.-
T Consensus 305 wtd 307 (400)
T 3p5b_L 305 WTD 307 (400)
T ss_dssp EEE
T ss_pred Eec
Confidence 886
No 261
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=81.11 E-value=49 Score=33.33 Aligned_cols=220 Identities=10% Similarity=0.021 Sum_probs=109.4
Q ss_pred EEEcC-CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEE-ECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 393 LHLDP-SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAM-LNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 393 ~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~-~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
....+ ++.+|+++... ..+++||+.++....... + ....+++. -++.+++... ..+++||+.+
T Consensus 54 p~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-~--~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~ 118 (326)
T 2ghs_A 54 PTFDPASGTAWWFNILE-----RELHELHLASGRKTVHAL-P--FMGSALAKISDSKQLIASD-------DGLFLRDTAT 118 (326)
T ss_dssp EEEETTTTEEEEEEGGG-----TEEEEEETTTTEEEEEEC-S--SCEEEEEEEETTEEEEEET-------TEEEEEETTT
T ss_pred CeEeCCCCEEEEEECCC-----CEEEEEECCCCcEEEEEC-C--CcceEEEEeCCCeEEEEEC-------CCEEEEECCC
Confidence 34444 47888876532 468999999887665432 2 12233333 3788887642 2489999999
Q ss_pred CcEEECCCCCCC--CcccEEEEE--CCEEEEEccCC-CCcccceEEEEeCCCccEEEcccccccccceEEEEE-CC-EEE
Q 005735 471 DEWTSRPSLNGT--KGSLAGATI--DNKIFAIGGGN-GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NG-VLY 543 (680)
Q Consensus 471 ~~W~~l~~lp~~--r~~~a~~v~--~gkIyV~GG~~-~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-~g-~Ly 543 (680)
++.+.+...+.. ........+ +|++|+..... .......++.|| +++...+.. ........+.. ++ .+|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGY 194 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEE
Confidence 888766443221 111222223 67787743211 111235688888 455544321 00111122222 34 577
Q ss_pred EEcCCCCCCcCceeEEEeCC--CC-cE---EEeccCCC-CCceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEE
Q 005735 544 ATGGYDGNEYMNSAERFDPR--EH-YW---TKIANMNR-RRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 544 v~GG~~~~~~~~~v~~yD~~--t~-~W---~~v~~~p~-~r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~ 615 (680)
+.... ...+++||.. ++ .. +.+..++. ......++.- ++.||+.... ...|.+||+....-.
T Consensus 195 v~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-----~~~v~~~d~~g~~~~ 264 (326)
T 2ghs_A 195 FVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-----EGAVDRYDTDGNHIA 264 (326)
T ss_dssp EEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-----TTEEEEECTTCCEEE
T ss_pred EEECC-----CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC-----CCEEEEECCCCCEEE
Confidence 76432 2478899875 44 21 11111111 1111223322 5677776421 146899999654433
Q ss_pred EcCCCCCCccceEEEEE--C-CEEEEEeccc
Q 005735 616 SGEPMKLSRGYLGAAVV--K-EAIYVIGGVK 643 (680)
Q Consensus 616 ~v~~lp~~R~~~s~v~~--~-~~lyV~GG~~ 643 (680)
.+. ++.. ...+++.- + +.|||.....
T Consensus 265 ~i~-~~~~-~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 265 RYE-VPGK-QTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEE-CSCS-BEEEEEEESTTSCEEEEEEBCT
T ss_pred EEE-CCCC-CcEEEEEecCCCCEEEEEecCC
Confidence 332 2221 22233332 2 4677765443
No 262
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=81.10 E-value=93 Score=36.56 Aligned_cols=195 Identities=11% Similarity=0.039 Sum_probs=101.7
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN 470 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t 470 (680)
.+..+.+++.+++.|+.++ .+.+||..+...... ......-.+++...++.++.|+.+ ..+.++|..+
T Consensus 21 ~~lafspdg~~lAsgs~Dg-----~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~D-----~~v~lWd~~~ 88 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTG-----EVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINAK-----DTVYVLSLYS 88 (902)
T ss_dssp EEEEEETTTTEEEEEETTS-----EEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEETT-----CEEEEEETTT
T ss_pred EEEEECCCCCEEEEEeCCC-----EEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEECc-----CeEEEEECCC
Confidence 4566777888888888753 577888776554322 111112233333335555555544 4688899887
Q ss_pred CcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcc--c------ccccc--cceEEEEE
Q 005735 471 DEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--S------MLQKR--FALAAAEL 538 (680)
Q Consensus 471 ~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~--~------~p~~r--~~~s~~~~ 538 (680)
.+-...-. .. ....++.+ +++.++.|+.++ .+.+||+.+..-.... . .+..+ ...+++..
T Consensus 89 ~~~~~~~~--~~-~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 89 QKVLTTVF--VP-GKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp CSEEEEEE--CS-SCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred CcEEEEEc--CC-CCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 65321111 11 11122222 566666666543 4778898877642110 0 01111 11223333
Q ss_pred --CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC------C---------C-CceeEEEEE--CCEEEEEeccCCC
Q 005735 539 --NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN------R---------R-RGCHSLAVL--NGKLYALGGFDGS 598 (680)
Q Consensus 539 --~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p------~---------~-r~~~s~v~~--~~~IyviGG~~~~ 598 (680)
++.++++|+.++ .+ +||..++.-...-... . . ...-..+.+ ++..++.|+.++
T Consensus 161 p~~~~~l~~g~~dg-----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg- 233 (902)
T 2oaj_A 161 PRDIGTVLISYEYV-----TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN- 233 (902)
T ss_dssp TTEEEEEEEECSSC-----EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC-
T ss_pred cCCCCEEEEEeCCC-----cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC-
Confidence 235667776553 57 9999887644321111 0 0 011122223 677777777653
Q ss_pred CCCCeEEEEeCCCCcEEE
Q 005735 599 AMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 599 ~~~~~v~~yD~~t~~W~~ 616 (680)
.+.+||.++.+-..
T Consensus 234 ----~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 234 ----SLVFWDANSGHMIM 247 (902)
T ss_dssp ----CEEEEETTTCCEEE
T ss_pred ----eEEEEECCCCcEEE
Confidence 58899998876543
No 263
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=80.58 E-value=17 Score=41.70 Aligned_cols=210 Identities=12% Similarity=0.055 Sum_probs=108.0
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC----cEEEC-C-CCCCCCcc
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND----EWTSR-P-SLNGTKGS 485 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~----~W~~l-~-~lp~~r~~ 485 (680)
..+.+++..+.....+... ....+++++. ++.||+.--.. ..|+++++.+. .-..+ . .+..+
T Consensus 386 ~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~~~~~~P--- 455 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISRDIQAP--- 455 (699)
T ss_dssp TC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCCSCC--C---
T ss_pred cceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEeCCCCCc---
Confidence 3567778777766554322 2233444444 67899864322 35788887651 11111 0 11111
Q ss_pred cEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEccc--ccccccceEEEE--ECCEEEEEcCCCCCCcCceeEE
Q 005735 486 LAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS--MLQKRFALAAAE--LNGVLYATGGYDGNEYMNSAER 559 (680)
Q Consensus 486 ~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~--~p~~r~~~s~~~--~~g~Lyv~GG~~~~~~~~~v~~ 559 (680)
.+.++ .+++||+... ....|.++++....-..+.. +..++ .+++ .++.||+..-. ....|++
T Consensus 456 ~glavD~~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~~~~I~~ 523 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----TPAKIKK 523 (699)
T ss_dssp CCEECCCSSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----SSCCEEB
T ss_pred ceEEEEeeCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----CCCeEEE
Confidence 12222 4678998642 23568899988765443321 22222 2222 25778876411 1246777
Q ss_pred EeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCC-CCccceEEEEECCEE
Q 005735 560 FDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK-LSRGYLGAAVVKEAI 636 (680)
Q Consensus 560 yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp-~~R~~~s~v~~~~~l 636 (680)
+++....-+.+.... .....++++- +++||+.... ...|+++|+....-+.+.... ......++++.++.|
T Consensus 524 ~~~dG~~~~~l~~~~-l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~l 597 (699)
T 1n7d_A 524 GGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 597 (699)
T ss_dssp CCSSSCCCCEESCSS-CSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEE
T ss_pred EeCCCCCeeEEEeCC-CCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEE
Confidence 776544333332111 1112234442 5789998643 467899998764444433221 122344666778899
Q ss_pred EEEecccCCCcccceEEEEcC
Q 005735 637 YVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 637 yV~GG~~~~~~~~~~ve~y~~ 657 (680)
|+.-... ..|.++++
T Consensus 598 ywtd~~~------~~V~~~d~ 612 (699)
T 1n7d_A 598 FWTDIIN------EAIFSANR 612 (699)
T ss_dssp EEECSTT------TCEEEEET
T ss_pred EEEeCCC------CeEEEEEc
Confidence 9886322 34666765
No 264
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=79.29 E-value=60 Score=33.30 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCC-----CCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 539 NGVLYATGGYDG-----NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 539 ~g~Lyv~GG~~~-----~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
++++|+....++ ......++++|+.+.+ .+..++... ..+++.. +..||+.++ ++|.+||+.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~-------~~v~v~D~~t 334 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG-------GNVNVYDISQ 334 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS-------SCEEEEECSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC-------CeEEEEECCC
Confidence 478998754221 1124589999998875 444444444 5555554 445665542 6789999887
Q ss_pred CcEEEcCCC-CCCccceEEE
Q 005735 612 GSWMSGEPM-KLSRGYLGAA 630 (680)
Q Consensus 612 ~~W~~v~~l-p~~R~~~s~v 630 (680)
..-+.+..+ +.+.....++
T Consensus 335 ~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 335 PEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp SSCEEEEEETTSCSSEEEEE
T ss_pred CcceeeEEeccCCCCcEEEE
Confidence 522555443 3344434433
No 265
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=79.17 E-value=76 Score=34.41 Aligned_cols=212 Identities=13% Similarity=0.007 Sum_probs=96.2
Q ss_pred CCEEEEEecCC--CCcccCeEEEEeCCC-----CeEEEcCCCCCC-----ccceEE---------E--EECCEEEEEecC
Q 005735 398 SESIYLVGGCD--GDSWLSTLELYLPSC-----DVIKTLKPMSSA-----RSYASA---------A--MLNGELYIFGGG 454 (680)
Q Consensus 398 ~~~Iyv~GG~~--~~~~~~~v~~yd~~t-----~~W~~l~~mp~~-----R~~~s~---------v--~~~~~IyV~GG~ 454 (680)
...+|+..+.. +......+...|... ++-...-+||.. +.+..+ . .-..++||-|..
T Consensus 25 e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~ 104 (462)
T 2ece_A 25 EDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLR 104 (462)
T ss_dssp CSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTT
T ss_pred ceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCC
Confidence 66788887763 334456677777664 222222233321 111100 1 224567766654
Q ss_pred CCCCccceEEEEeCCCC----cEEECCC---C----CCCCcccEEEEECCEEEEEccCC-CCcccceEEEEeCCCccEEE
Q 005735 455 DGNSWHNTVESYSPAND----EWTSRPS---L----NGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 455 ~~~~~~~~v~vyD~~t~----~W~~l~~---l----p~~r~~~a~~v~~gkIyV~GG~~-~~~~~~~ve~yD~~t~~W~~ 522 (680)
. +.++++|..++ +-.+.-. + ...+-.+..+.-+| |||-.-.+ .......+.++|.++.+=..
T Consensus 105 s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 105 S-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp T-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred C-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence 3 57999998876 2222110 1 11122222333356 76642211 12234679999999765322
Q ss_pred ccccc--ccccceEEEE-ECCEEEEEc----------CCCCC----CcCceeEEEeCCCCcEEEeccCCCCCc--ee-EE
Q 005735 523 TRSML--QKRFALAAAE-LNGVLYATG----------GYDGN----EYMNSAERFDPREHYWTKIANMNRRRG--CH-SL 582 (680)
Q Consensus 523 i~~~p--~~r~~~s~~~-~~g~Lyv~G----------G~~~~----~~~~~v~~yD~~t~~W~~v~~~p~~r~--~~-s~ 582 (680)
.-+.+ ...+..-... -++++++.- |+... .+.+.+.+||..+++ .+..++.+.. .. .+
T Consensus 179 ~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 179 KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALEL 256 (462)
T ss_dssp ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEE
T ss_pred EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCcccee
Confidence 11111 1111111111 133344433 22222 346789999998763 3333332211 11 11
Q ss_pred EE-E---CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 583 AV-L---NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 583 v~-~---~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.. + +...|+....+.....+.|++|..+.+.|...
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~ 295 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE 295 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence 11 1 34566665422222334566555445777653
No 266
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=78.85 E-value=1e+02 Score=35.69 Aligned_cols=238 Identities=13% Similarity=0.146 Sum_probs=121.2
Q ss_pred EEEEeCCCCeEEEcCCCCC-----CccceEEEEE---CCEEEEEecCCC-CCccceEEEEeCCCCcEEECCC-CCC----
Q 005735 416 LELYLPSCDVIKTLKPMSS-----ARSYASAAML---NGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPS-LNG---- 481 (680)
Q Consensus 416 v~~yd~~t~~W~~l~~mp~-----~R~~~s~v~~---~~~IyV~GG~~~-~~~~~~v~vyD~~t~~W~~l~~-lp~---- 481 (680)
+++-+-.-.+|+.+...+. .+..+++++. .+.||+..|... ..+ ..+++=+-.-.+|+.+.. ++.
T Consensus 39 v~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~-~~v~~S~DgG~TW~~~~~~~~~~~~~ 117 (789)
T 1sqj_A 39 AYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW-AAFYVSEDRGQSFTIYESPFPMGAND 117 (789)
T ss_dssp EEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC-CEEEEESSTTSEEEEEECSSCCCTTS
T ss_pred EEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc-cEEEEECCCCCcceeccCCcccCccC
Confidence 6777777789999865331 2334455544 257888766422 111 345555556679988743 111
Q ss_pred -CC-cccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccc---cccceEEEEE----CCEEEEEcCCC
Q 005735 482 -TK-GSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ---KRFALAAAEL----NGVLYATGGYD 549 (680)
Q Consensus 482 -~r-~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~---~r~~~s~~~~----~g~Lyv~GG~~ 549 (680)
.| .....++. .+.+|+. ... ..++.=+=.-.+|+.+..++. .-.....+.+ .+.||+.....
T Consensus 118 ~~~~~~~~iav~p~~~~~v~~g-~~~-----~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 191 (789)
T 1sqj_A 118 MGRNNGERLAVNPFNSNEVWMG-TRT-----EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP 191 (789)
T ss_dssp TTTTSCCCEEEETTEEEEEEEE-CSS-----SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST
T ss_pred CCccceeEEEEcCCCCCEEEEE-ecc-----CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC
Confidence 12 12234443 2456663 211 223322223468998875441 1122233333 24677754321
Q ss_pred CCCcCceeEEEeCCCCcEEEeccCCCCC----------------ceeEEEEE--CCEEEEEeccCCC---CCCCeEEEEe
Q 005735 550 GNEYMNSAERFDPREHYWTKIANMNRRR----------------GCHSLAVL--NGKLYALGGFDGS---AMVPSIEVYD 608 (680)
Q Consensus 550 ~~~~~~~v~~yD~~t~~W~~v~~~p~~r----------------~~~s~v~~--~~~IyviGG~~~~---~~~~~v~~yD 608 (680)
..+++=.-.-.+|+.+..++... ..+.+++. .+.||+..+.... .....++..+
T Consensus 192 -----~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~ 266 (789)
T 1sqj_A 192 -----QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQN 266 (789)
T ss_dssp -----TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEE
T ss_pred -----CeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEe
Confidence 23444333346899987554322 11444333 7888887432110 1234688888
Q ss_pred CCCCcEEEcCCCCCC---------c----cceEEEEE---CCEEEEEecccCCCcccceEEEEcCC-CCeEecc
Q 005735 609 PRLGSWMSGEPMKLS---------R----GYLGAAVV---KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEIN 665 (680)
Q Consensus 609 ~~t~~W~~v~~lp~~---------R----~~~s~v~~---~~~lyV~GG~~~~~~~~~~ve~y~~~-~~W~~v~ 665 (680)
-...+|+.+...+.. . ....+++. .+.||+.++..........+++=.-+ .+|+.+.
T Consensus 267 DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 267 RTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp TTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEESSTTSSEEEHH
T ss_pred CCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEecCCCCCceeCc
Confidence 888999998765431 1 22344443 24677776532110011223333333 8899886
No 267
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=77.95 E-value=50 Score=31.65 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=80.8
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEE--Ec----CCCCCCccceEEEEE--CCEEEEEecCCCCCccce
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIK--TL----KPMSSARSYASAAML--NGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~--~l----~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~ 462 (680)
.+++. ..+.+|+|=|. .+|+++.....+. .+ +.+|. ..-++... ++++|+|-| +.
T Consensus 27 DAi~~-~~g~~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG-------~~ 89 (207)
T 1pex_A 27 DAITS-LRGETMIFKDR-------FFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG-------RK 89 (207)
T ss_dssp SEEEE-ETTEEEEEETT-------EEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET-------TE
T ss_pred eEEEe-CCCcEEEEECC-------EEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc-------CE
Confidence 34443 48889988873 4777776543332 11 23332 22233333 589999988 35
Q ss_pred EEEEeCCCCcE---EECCC--CCCCCccc-EEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEE-----c----cc
Q 005735 463 VESYSPANDEW---TSRPS--LNGTKGSL-AGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR-----T----RS 525 (680)
Q Consensus 463 v~vyD~~t~~W---~~l~~--lp~~r~~~-a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~-----i----~~ 525 (680)
+|+|+..+-.- +.+.. +|...... |+... ++++|+|-| +..+.||..+++-.. + +.
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~G 162 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPG 162 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTT
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCCC
Confidence 78886432211 22322 22211122 33333 489999976 467889887654211 1 12
Q ss_pred ccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEE
Q 005735 526 MLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTK 569 (680)
Q Consensus 526 ~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 569 (680)
+|. ..-++...++++|+|-| +..|+||..+.+-..
T Consensus 163 ip~--~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 163 IGD--KVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp SCS--CCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCC--CccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 222 22344456999999976 467899987765443
No 268
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=77.85 E-value=36 Score=33.80 Aligned_cols=163 Identities=11% Similarity=0.059 Sum_probs=81.1
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCC---ccceEEEEE-CCEEEEE----ecCCC------
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSA---RSYASAAML-NGELYIF----GGGDG------ 456 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~---R~~~s~v~~-~~~IyV~----GG~~~------ 456 (680)
....+.+++.+|+.... ...+.+|++. ++...+...... .....+++. ++.||+. |-...
T Consensus 89 ~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp EEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred ceeeECCCCCEEEEECC-----CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 34555567777765321 1358888886 566555321111 111223333 6788885 32210
Q ss_pred --CCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCccEEE---ccccccc
Q 005735 457 --NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGKWIR---TRSMLQK 529 (680)
Q Consensus 457 --~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W~~---i~~~p~~ 529 (680)
......+++||+.+++++.+. .... ..+.+.. ++ .+|+..........+.+++||+..+.... ....+..
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~-p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQRMA--DLDH-PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCEEEE--EESS-EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred ccccCCCeEEEEcCCCCcEEEEe--cCCC-CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 112357999999888776653 1111 1122322 44 48887432111112578899887654221 1111111
Q ss_pred ccceEEEE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 530 RFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 530 r~~~s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
. ...++. -+|.||+..+ ..+.+||+.......+
T Consensus 240 ~-pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~ 273 (305)
T 3dr2_A 240 L-PDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHI 273 (305)
T ss_dssp C-CCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEE
T ss_pred C-CCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEE
Confidence 1 111222 2677887542 3589999966555444
No 269
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=76.04 E-value=18 Score=35.44 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCEEEEEecCCCCCccceEEEEe------CC---------CCcEEECCCCCCCCcccEEEE--ECCEEEEEccCCCCccc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYS------PA---------NDEWTSRPSLNGTKGSLAGAT--IDNKIFAIGGGNGLECF 507 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD------~~---------t~~W~~l~~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~ 507 (680)
.+++|+|-|. .+|+++ .. +..|..+|..+......-++. .++++|+|-|
T Consensus 13 ~ge~~fFk~~-------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg------- 78 (225)
T 3oyo_A 13 EYEVYFFAKN-------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG------- 78 (225)
T ss_dssp TTEEEEEETT-------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-------
T ss_pred CCEEEEEECC-------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-------
Confidence 7899999873 467776 11 123333322112122333333 4899999976
Q ss_pred ceEEEEeCCCc----cEEE----c----cccccc--c-cceEEEE--ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-
Q 005735 508 SDVEMLDLDIG----KWIR----T----RSMLQK--R-FALAAAE--LNGVLYATGGYDGNEYMNSAERFDPREHYWTK- 569 (680)
Q Consensus 508 ~~ve~yD~~t~----~W~~----i----~~~p~~--r-~~~s~~~--~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~- 569 (680)
+..++||..++ .... + +.+|.. . .--++.. .++++|+|-| +..|+||..+++...
T Consensus 79 ~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG-------~~yw~~d~~~~~~~~g 151 (225)
T 3oyo_A 79 NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG-------NKYVRIAYDSKQLVGN 151 (225)
T ss_dssp TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-------CeEEEEECCCCeecCC
Confidence 35677765321 1111 1 223321 0 1112223 2789999977 468999977665543
Q ss_pred ---ec-cCCC------CCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 570 ---IA-NMNR------RRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 570 ---v~-~~p~------~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
+. ..|. +...-++... ++++|++-| +..|.||..
T Consensus 152 Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 152 IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 11 1221 2223344443 789999977 457999987
No 270
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=76.02 E-value=82 Score=33.26 Aligned_cols=115 Identities=10% Similarity=-0.014 Sum_probs=62.8
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCC----CCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDG----NSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~----~~~~~~v~vyD~~t~ 471 (680)
++.+|+.-... ....+.++++|..+++-.. .++.....+ +++. +..+||...... ....+.+.++|..++
T Consensus 44 ~~~vyV~~~~~-~~~~~~V~ViD~~t~~v~~--~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 44 ARRVYVNDPAH-FAAVTQQFVIDGEAGRVIG--MIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp TTEEEEEECGG-GCSSEEEEEEETTTTEEEE--EEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCEEEEEcCcc-cCCCCEEEEEECCCCeEEE--EEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 67788875421 1112579999999876432 223333334 4333 567998763210 012357999999998
Q ss_pred cEEECCCCCC-CC-----cccEEE-EECC-EEEEEccCCCCcccceEEEEeCCCccE
Q 005735 472 EWTSRPSLNG-TK-----GSLAGA-TIDN-KIFAIGGGNGLECFSDVEMLDLDIGKW 520 (680)
Q Consensus 472 ~W~~l~~lp~-~r-----~~~a~~-v~~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W 520 (680)
+-..--+++. .| .-+..+ .-+| .+||.... ..+.+.+.|+.+++=
T Consensus 120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----CCCeEEEEECCCCcE
Confidence 7532211221 11 122222 3344 58886321 135788999998874
No 271
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=75.87 E-value=36 Score=33.14 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=56.7
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCC----CcEEE--------CCCCCCC--Cccc-EEEE--ECCEEEEEccCCCCcc
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPAN----DEWTS--------RPSLNGT--KGSL-AGAT--IDNKIFAIGGGNGLEC 506 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t----~~W~~--------l~~lp~~--r~~~-a~~v--~~gkIyV~GG~~~~~~ 506 (680)
.++++|+|=| +.+|+||..+ +.... .+.+|.. .... |+.. .++++|.|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 4899999988 3588887532 22211 1223321 0122 3323 2689999976
Q ss_pred cceEEEEeCCCccEEEc----c-cccc------cccceEEEE--ECCEEEEEcCCCCCCcCceeEEEeCC
Q 005735 507 FSDVEMLDLDIGKWIRT----R-SMLQ------KRFALAAAE--LNGVLYATGGYDGNEYMNSAERFDPR 563 (680)
Q Consensus 507 ~~~ve~yD~~t~~W~~i----~-~~p~------~r~~~s~~~--~~g~Lyv~GG~~~~~~~~~v~~yD~~ 563 (680)
+..++||..+++...- . ..|. +...-++.. .++++|++-| +..|+||..
T Consensus 136 -~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 136 -NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp -TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred -CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 4578888776654431 1 1221 122223334 2789999977 367899987
No 272
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=75.48 E-value=56 Score=30.96 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=75.5
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCC--cE-EEC----CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEE
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EW-TSR----PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEM 512 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W-~~l----~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~ 512 (680)
+++.+.+++|+|-|. .+|+++.... .. +.+ +.+|. .-..+....++++|+|-| +..+.
T Consensus 10 A~~~~~g~~~fFkg~-------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~ 74 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER-------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------DKHWV 74 (196)
T ss_dssp EEEEETTEEEEEETT-------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------TEEEE
T ss_pred EEEEcCCEEEEEECC-------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------CEEEE
Confidence 345678999999883 4777754310 00 111 23342 222222224788999866 34677
Q ss_pred EeCCCccE---EEcc----cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEE-----EeccC-CCCC
Q 005735 513 LDLDIGKW---IRTR----SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWT-----KIANM-NRRR 577 (680)
Q Consensus 513 yD~~t~~W---~~i~----~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~-----~v~~~-p~~r 577 (680)
|+..+... ..+. .+|..... ++... ++++|+|-| +..|+||..+++-. .+... ..+.
T Consensus 75 ~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip~ 146 (196)
T 3c7x_A 75 FDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIPE 146 (196)
T ss_dssp EETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCCS
T ss_pred EeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcCC
Confidence 76442111 1221 23322222 33333 689999976 36789998765321 11111 1122
Q ss_pred ceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 578 GCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 578 ~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
...++... ++ ++|++-| +..|.||..+.+
T Consensus 147 ~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 147 SPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp SCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred CcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 22333334 44 8999976 457999987754
No 273
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=74.99 E-value=61 Score=33.34 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=78.9
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCC--eEEEcCC----CCCCccceEEEEE--CC-EEEEEecCCCCCccc
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCD--VIKTLKP----MSSARSYASAAML--NG-ELYIFGGGDGNSWHN 461 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~----mp~~R~~~s~v~~--~~-~IyV~GG~~~~~~~~ 461 (680)
.+..+.+++.+++.| .+ ..+.+||..+. .+..+.. +.........+.+ ++ .+++.|+.++
T Consensus 181 ~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----- 249 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG----- 249 (447)
T ss_dssp CEEEECTTSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-----
T ss_pred EEEEEcCCCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-----
Confidence 345566677777776 33 35788888732 2332211 1112222223333 34 6778887653
Q ss_pred eEEEEeCCCCcE-----EECCCCCCC--C-------cccEEEEE--CCEEEEEccCCCCcccceEEEEeCCC-ccEE-Ec
Q 005735 462 TVESYSPANDEW-----TSRPSLNGT--K-------GSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDI-GKWI-RT 523 (680)
Q Consensus 462 ~v~vyD~~t~~W-----~~l~~lp~~--r-------~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t-~~W~-~i 523 (680)
.+.+||..+.+. ..+.....+ + ....++.+ ++++++.|+. ..+.+||+.+ ++-. .+
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY------LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES------SEEEEEETTCCSSCSCCE
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC------CeEEEEeCCCCcccccee
Confidence 588899887652 222111100 0 02222222 5666666542 4678899876 3311 01
Q ss_pred cccccccc-------------ceEEEE-ECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 524 RSMLQKRF-------------ALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 524 ~~~p~~r~-------------~~s~~~-~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
..-...+. ...++. -++..++.|+.++ .+.+||..++.-..+
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN-----FFRMFDRNTKRDITL 379 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT-----EEEEEETTTCCEEEE
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccCC-----EEEEEEcCCCcceee
Confidence 00000000 001222 2566667777664 688999988876554
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=74.20 E-value=76 Score=31.88 Aligned_cols=193 Identities=14% Similarity=0.025 Sum_probs=104.5
Q ss_pred eEEEcC-CCEEEEEecCCCCcccCeEEEEeCCC----CeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEE
Q 005735 392 ELHLDP-SESIYLVGGCDGDSWLSTLELYLPSC----DVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVE 464 (680)
Q Consensus 392 ~~~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t----~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~ 464 (680)
...+.. ++.||+.-.. ...++++++.. .....+.... .....++++. ++.||+.-... ..++
T Consensus 34 g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavd~~~~~ly~~d~~~-----~~I~ 102 (316)
T 1ijq_A 34 ALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVL-----GTVS 102 (316)
T ss_dssp EEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSS-CSCCCEEEEETTTTEEEEEETTT-----TEEE
T ss_pred EEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCC-CCCcCEEEEeecCCeEEEEECCC-----CEEE
Confidence 334443 6788887643 24688888875 2222221111 1223455553 78999985432 4688
Q ss_pred EEeCCCCcEEECC--CCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--
Q 005735 465 SYSPANDEWTSRP--SLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-- 538 (680)
Q Consensus 465 vyD~~t~~W~~l~--~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~-- 538 (680)
++|+....-+.+. .+..| .+.++ .++.||+.... ....++++++....-..+... .......++.-
T Consensus 103 ~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~----~~~~I~~~~~dG~~~~~~~~~-~~~~P~gla~d~~ 174 (316)
T 1ijq_A 103 VADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLL 174 (316)
T ss_dssp EEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----SSCEEEEEETTSCCEEEEECS-SCSCEEEEEEETT
T ss_pred EEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC----CCCeEEEEcCCCCCeEEEEEC-CCCCceEEEEecc
Confidence 9998765433321 22222 12333 26789987531 125788998875443333211 11122234443
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC-CCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM-NRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~-p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
+++||+.-.. ...|+++|.....-+.+... .......++++.++.||+.... ...|..+|+.+.+
T Consensus 175 ~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~-----~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 175 SGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTGS 240 (316)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT-----TTEEEEEETTTCC
T ss_pred CCEEEEEECC-----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECC-----CCeEEEEeCCCCc
Confidence 6899997432 35789999875443334322 1222345667778999998632 3578999986543
No 275
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=73.49 E-value=26 Score=37.97 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=77.1
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCCcEEE--C----CCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEE
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTS--R----PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVE 511 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~--l----~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve 511 (680)
+++.+.+++|+|-|. .+|+++.....+.. + +.+|.. - -++... ++++|+|=| +.+|
T Consensus 267 Ai~~~~ge~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-i-DAa~~~~~~g~~~fFKg-------~~~W 330 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNG-L-EAAYEFADRDEVRFFKG-------NKYW 330 (450)
T ss_dssp EEEEETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSS-C-CEEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEecCCeEEEEeCC-------EEEEEcCCCCcccceehhHhccCCCCC-e-eEEEEEcCCCeEEEEeC-------CEEE
Confidence 556689999999884 35555544322211 1 223321 1 122222 689999966 3455
Q ss_pred EEeCCCcc--E-EEcc---cccc-cccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEE-----Eec-cCC-C
Q 005735 512 MLDLDIGK--W-IRTR---SMLQ-KRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWT-----KIA-NMN-R 575 (680)
Q Consensus 512 ~yD~~t~~--W-~~i~---~~p~-~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~-----~v~-~~p-~ 575 (680)
+|+..+-. + ..+. .+|. +..--++... ++++|+|-| +..|+||..+.+-. .+. ..| .
T Consensus 331 ~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 331 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCC
Confidence 66533210 0 0111 1221 1111123333 689999976 47899987654321 121 111 1
Q ss_pred CCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 576 RRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 576 ~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
+...-+++..++++|.+-| +..|.||..+.+=..
T Consensus 404 p~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 404 GHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp CSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 2222344456899999977 457999987765443
No 276
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.34 E-value=95 Score=32.58 Aligned_cols=146 Identities=16% Similarity=0.077 Sum_probs=80.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCcc-EEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGK-WIR 522 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~ 522 (680)
++.||+..... ..+.++|+.++.-..+.... .. .+.+..- ++.+|+...... ..++.+|+.... ...
T Consensus 141 ~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~-~~-~~ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 141 NNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGF-KG-GKPAVTKDKQRVYSIGWEGT----HTVYVYMKASGWAPTR 209 (409)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTTEEEEEEETC-CB-CBCEECTTSSEEEEEBSSTT----CEEEEEEGGGTTCEEE
T ss_pred CCCEEEEecCC-----CcEEEEECCCCEEEEeeccC-CC-CceeEecCCCcEEEEecCCC----ceEEEEEcCCCceeEE
Confidence 67899987632 46899999987665443221 11 1211122 345777643221 168888887653 223
Q ss_pred ccccc--ccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC---CCCCce-e-EEEEE--CCEEEE
Q 005735 523 TRSML--QKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM---NRRRGC-H-SLAVL--NGKLYA 591 (680)
Q Consensus 523 i~~~p--~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~---p~~r~~-~-s~v~~--~~~Iyv 591 (680)
+...+ .....+.+++. ++.||+... ...+++||+.+.....+... ...... . .++.. ++.||+
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 31111 11122233333 688999432 23799999988776555221 111222 2 45554 588999
Q ss_pred EeccCCCCCCCeEEEEeCCCC
Q 005735 592 LGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 592 iGG~~~~~~~~~v~~yD~~t~ 612 (680)
.... ...|++||+...
T Consensus 284 ~d~~-----~~~I~~~~~~g~ 299 (409)
T 3hrp_A 284 SDQN-----LSSVYKITPDGE 299 (409)
T ss_dssp EETT-----TTEEEEECTTCC
T ss_pred EeCC-----CCEEEEEecCCC
Confidence 8643 357899998765
No 277
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=72.71 E-value=1.1e+02 Score=33.12 Aligned_cols=167 Identities=10% Similarity=-0.028 Sum_probs=76.3
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCC----eEEEcCC---C--CCC-ccceEEEEE-CCEEEEE--ecCCCCCccceEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCD----VIKTLKP---M--SSA-RSYASAAML-NGELYIF--GGGDGNSWHNTVE 464 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~----~W~~l~~---m--p~~-R~~~s~v~~-~~~IyV~--GG~~~~~~~~~v~ 464 (680)
...+|+-|.. .+.++++|..++ +....-. + ... ...|.+... ++ |||- |+.. +.....+.
T Consensus 95 r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~-g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE-GEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT-SCSCCEEE
T ss_pred CCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcC-CCCCCeEE
Confidence 4445554443 267999998766 3333221 1 111 123433333 55 8873 3322 23346899
Q ss_pred EEeCCCCcEEEC-C--CCCCCCcccEEEEECCEEEEEc----------cCCCC----cccceEEEEeCCCccEEEccccc
Q 005735 465 SYSPANDEWTSR-P--SLNGTKGSLAGATIDNKIFAIG----------GGNGL----ECFSDVEMLDLDIGKWIRTRSML 527 (680)
Q Consensus 465 vyD~~t~~W~~l-~--~lp~~r~~~a~~v~~gkIyV~G----------G~~~~----~~~~~ve~yD~~t~~W~~i~~~p 527 (680)
++|..|.+-... + ..+....+-....-++++++.- |.... ...+.+.+||..+++-...-++.
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 999998653221 1 1111111111112244433332 22222 34678999999986432221222
Q ss_pred ccccceEEEEE-----CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec
Q 005735 528 QKRFALAAAEL-----NGVLYATGGYDGNEYMNSAERFDPREHYWTKIA 571 (680)
Q Consensus 528 ~~r~~~s~~~~-----~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 571 (680)
..-..+.-..+ +..+|+..-.+-....+.+++|....+.|..+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 11111111112 345666644222223346665554457776653
No 278
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=71.78 E-value=98 Score=32.07 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCC----CCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-CCE-EEEEeccCCCCCCCeEEEEeCCCC
Q 005735 539 NGVLYATGGYDG----NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGK-LYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 539 ~g~Lyv~GG~~~----~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~~~-IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
++++|+...... ....+.++++|+.+.+- +..++.+...++++.. +++ +++.+... .++|.+||..+.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~ 351 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCC
Confidence 478888753211 11346899999887654 3333333334444443 444 44343321 367999998764
Q ss_pred cEEEcCC-CCCCccceEEEEE
Q 005735 613 SWMSGEP-MKLSRGYLGAAVV 632 (680)
Q Consensus 613 ~W~~v~~-lp~~R~~~s~v~~ 632 (680)
+.+.. .+.++..+.+..+
T Consensus 352 --~vv~~i~~vG~~P~~~~~~ 370 (373)
T 2mad_H 352 --DQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred --CEEeeecCCCCCCcEEEEc
Confidence 34444 3444455554443
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=69.92 E-value=1.1e+02 Score=31.83 Aligned_cols=184 Identities=14% Similarity=0.040 Sum_probs=100.5
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
++.||+.--. ...++++++.......+..... ....++++. ++.||+.-... ..++++++....-+.
T Consensus 127 ~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~~-~~p~glavd~~~g~lY~~d~~~-----~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 127 RELVFWSDVT-----LDRILRANLNGSNVEEVVSTGL-ESPGGLAVDWVHDKLYWTDSGT-----SRIEVANLDGAHRKV 195 (386)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCCEEEEECSSC-SCCCCEEEETTTTEEEEEETTT-----TEEEECBTTSCSCEE
T ss_pred CCeEEEEeCC-----CCcEEEEecCCCCcEEEEeCCC-CCccEEEEEeCCCeEEEEcCCC-----CeEEEEeCCCCceEE
Confidence 6777776432 2468888888776555422111 112334444 78999886533 468888876543332
Q ss_pred CC--CCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCC
Q 005735 476 RP--SLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYD 549 (680)
Q Consensus 476 l~--~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~ 549 (680)
+. .+..| .+.++- ++.||+..-.. ...++++++....-..+.... .....++++- +++||+.-.
T Consensus 196 l~~~~l~~P---~giavdp~~g~ly~td~~~----~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~-- 265 (386)
T 3v65_B 196 LLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDA-- 265 (386)
T ss_dssp EECSSCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEET--
T ss_pred eecCCCCCC---cEEEEEcCCCeEEEeccCC----CCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEEC--
Confidence 21 12211 122332 67899874211 357899998765433322111 1112233332 789999843
Q ss_pred CCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 550 GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 550 ~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
....|+++|.....-+.+.... ...-.++++.++.||+..-. ...|..+|..+
T Consensus 266 ---~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~-----~~~V~~~~~~~ 318 (386)
T 3v65_B 266 ---KHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH-----TKSINSANKFT 318 (386)
T ss_dssp ---TTTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT-----TTEEEEEETTT
T ss_pred ---CCCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeCC-----CCeEEEEECCC
Confidence 2357899998754333332211 12235666688999998632 35688888544
No 280
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=69.52 E-value=33 Score=38.59 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=41.2
Q ss_pred ceEEEcCCCEEEEEecCCCC----cccCeEEEEeCCCCeE---EEcCCCCCCccceEEEEECCEEEEEecCCCCCccceE
Q 005735 391 DELHLDPSESIYLVGGCDGD----SWLSTLELYLPSCDVI---KTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~----~~~~~v~~yd~~t~~W---~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v 463 (680)
....+.++++.++++...+. .....++++|..+++. ..+. .........-+++.++++.. .++
T Consensus 63 ~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~~------~~i 132 (719)
T 1z68_A 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVYQ------NNI 132 (719)
T ss_dssp SEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEET------TEE
T ss_pred eeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----cccccceECCCCCEEEEEEC------CeE
Confidence 34556667776666653211 1235799999998876 3332 11111122225544444431 368
Q ss_pred EEEeCCCCcEEEC
Q 005735 464 ESYSPANDEWTSR 476 (680)
Q Consensus 464 ~vyD~~t~~W~~l 476 (680)
+++|..+++-..+
T Consensus 133 ~~~~~~~g~~~~l 145 (719)
T 1z68_A 133 YLKQRPGDPPFQI 145 (719)
T ss_dssp EEESSTTSCCEEC
T ss_pred EEEeCCCCCcEEE
Confidence 8888877665554
No 281
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=69.21 E-value=1.2e+02 Score=32.02 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=52.6
Q ss_pred CEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 493 NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 493 gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
+.+++.|+.++ .+.+||+.++.-.. .... ......++.+ +++.++.|+.++ .+.+||+....-..+
T Consensus 162 ~~~las~s~Dg-----~v~iwD~~~~~~~~-~~~~-~~~~v~~v~wspdg~~lasgs~dg-----~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 162 PSMVAVCLADG-----SIAVLQVTETVKVC-ATLP-STVAVTSVCWSPKGKQLAVGKQNG-----TVVQYLPTLQEKKVI 229 (434)
T ss_dssp TTEEEEEETTS-----CEEEEEESSSEEEE-EEEC-GGGCEEEEEECTTSSCEEEEETTS-----CEEEECTTCCEEEEE
T ss_pred CCEEEEEECCC-----eEEEEEcCCCccee-eccC-CCCceeEEEEcCCCCEEEEEcCCC-----cEEEEccCCcccccc
Confidence 56777776553 47788888763211 1111 1112223333 577777777654 688999873333333
Q ss_pred ccCCCCC-----ceeEEEEECCEEEEE--eccCCC-CCCCeEEEEeCCCC
Q 005735 571 ANMNRRR-----GCHSLAVLNGKLYAL--GGFDGS-AMVPSIEVYDPRLG 612 (680)
Q Consensus 571 ~~~p~~r-----~~~s~v~~~~~Iyvi--GG~~~~-~~~~~v~~yD~~t~ 612 (680)
....... ...++....+..|++ ...++. .....+.+||+.+.
T Consensus 230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 2211111 122223333333443 222222 33456888887643
No 282
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=68.78 E-value=1.7e+02 Score=33.51 Aligned_cols=259 Identities=15% Similarity=0.150 Sum_probs=133.2
Q ss_pred ccceEEEcCC--CEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCc----c-ceEEEEE---CCEEEEEecCCCCC
Q 005735 389 SSDELHLDPS--ESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSAR----S-YASAAML---NGELYIFGGGDGNS 458 (680)
Q Consensus 389 ~~~~~~v~~~--~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R----~-~~s~v~~---~~~IyV~GG~~~~~ 458 (680)
+.....+.+. +.||+.... ..+++.+-...+|+.+...+... . ..++++. .+.||+..|.....
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~------ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~ 97 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAI------GGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTND 97 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSS------SCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSS
T ss_pred eeeEEEECCCCCCEEEEEecC------CcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccc
Confidence 4455666553 567764312 24889888889999986533211 2 2233332 25888876532111
Q ss_pred c---cceEEEEeCCCCcEEECCC-CC----CC-C-cccEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEccc
Q 005735 459 W---HNTVESYSPANDEWTSRPS-LN----GT-K-GSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS 525 (680)
Q Consensus 459 ~---~~~v~vyD~~t~~W~~l~~-lp----~~-r-~~~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~ 525 (680)
+ ...+++-.-.-.+|+.+.. .+ .+ + ..+..++- .+.||+... .+ ..+++=+=.-.+|+.+..
T Consensus 98 ~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~-~g----~gl~~S~DgG~tW~~~~~ 172 (737)
T 2cn3_A 98 WLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR-CG----NGLWRSTDYGVTWSKVES 172 (737)
T ss_dssp SSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS-TT----CCEEEESSTTSSCEECTT
T ss_pred cccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec-cC----CcEEEeCCCCcceecccC
Confidence 1 1345554455678988642 11 01 1 11334432 255776431 11 122222222357998875
Q ss_pred ccccc--------------cceEEEEEC----------CEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeE
Q 005735 526 MLQKR--------------FALAAAELN----------GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHS 581 (680)
Q Consensus 526 ~p~~r--------------~~~s~~~~~----------g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s 581 (680)
+|... .+...+.++ +.||+.-...+ ..+++-.-.-.+|+.+..+|.....+.
T Consensus 173 ~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~----~~v~~S~DgG~tW~~~~~~p~~~~~~~ 248 (737)
T 2cn3_A 173 FPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKN----ESIYRSTDGGVTWKAVPGQPKGLLPHH 248 (737)
T ss_dssp CCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSS----CCEEEESSTTSCCEECTTCCCSSEEEE
T ss_pred CCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCC----ccEEEEcCCCCceEECCCCCCcccceE
Confidence 55321 112223332 26776422111 124444334568999987776554444
Q ss_pred EEEE-CCEEEEEeccCCC----CCCCeEEEEeCCCCcEEEcCCCCCC----ccceEEEEE----CCEEEEEecccCCCcc
Q 005735 582 LAVL-NGKLYALGGFDGS----AMVPSIEVYDPRLGSWMSGEPMKLS----RGYLGAAVV----KEAIYVIGGVKNGSEI 648 (680)
Q Consensus 582 ~v~~-~~~IyviGG~~~~----~~~~~v~~yD~~t~~W~~v~~lp~~----R~~~s~v~~----~~~lyV~GG~~~~~~~ 648 (680)
++.. ++.+|+..+.... .....++.++-...+|+.+...|.. +.+++.+.+ .+.||+.+..... .
T Consensus 249 ~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~~~~--~ 326 (737)
T 2cn3_A 249 GVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMNAWW--P 326 (737)
T ss_dssp EEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEECCCS--S
T ss_pred EEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEecccCC--C
Confidence 4433 6788887543211 1234689999999999999776542 333343333 3568877653110 0
Q ss_pred cceEEEE-cCCCCeEec
Q 005735 649 VDTVERF-KEGQGWEEI 664 (680)
Q Consensus 649 ~~~ve~y-~~~~~W~~v 664 (680)
-..++.= |-+.+|+.+
T Consensus 327 ~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 327 DEYIFRSTDGGATWKNI 343 (737)
T ss_dssp CCCEEEESSTTSSCEES
T ss_pred CccEEEeCCCCccccch
Confidence 0122222 223789887
No 283
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=67.74 E-value=51 Score=35.35 Aligned_cols=115 Identities=11% Similarity=-0.095 Sum_probs=60.1
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE-CC-EEEEEccCC----CCcccceEEEEeCCCc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DN-KIFAIGGGN----GLECFSDVEMLDLDIG 518 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~----~~~~~~~ve~yD~~t~ 518 (680)
...+||......... +.+.++|+.+++-.. .++..... ..+.- ++ .+||.-... .....+.+.++|+.+.
T Consensus 84 ~~~vyV~n~~~~~~~-~~VsVID~~t~~vv~--~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 84 ARRVYIQDPAHFAAI-TQQFVIDGSTGRILG--MTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp TTEEEEEECTTTCSS-EEEEEEETTTTEEEE--EEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCEEEEECCCcCCCC-CeEEEEECCCCEEEE--EEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 457888765332211 689999999886532 22222222 22222 44 588873110 0012457899999998
Q ss_pred cEEEccccc-ccc-----cceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcE
Q 005735 519 KWIRTRSML-QKR-----FALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYW 567 (680)
Q Consensus 519 ~W~~i~~~p-~~r-----~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W 567 (680)
+-...-+++ ..| .-+.++.. +.++|+..-. ..+.+.++|+.+.+-
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeE
Confidence 743322222 111 11122222 4467776321 135789999988764
No 284
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=67.20 E-value=86 Score=29.62 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=74.7
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEeCCCc--cEE--Ec----ccccccccceEEEEE--CCEEEEEcCCCCCCcCce
Q 005735 487 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KWI--RT----RSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNS 556 (680)
Q Consensus 487 a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~--~W~--~i----~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~ 556 (680)
|.+.++|++|+|=| ..++.++.... ... .+ +.+|.. --++... ++++|+|-| +.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------TE
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC-------CE
Confidence 44567999999966 34556655441 221 11 234432 1223333 688999977 36
Q ss_pred eEEEeCCCCc-EEEecc--CCCC--CceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEE-----c----CCCCC
Q 005735 557 AERFDPREHY-WTKIAN--MNRR--RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-----G----EPMKL 622 (680)
Q Consensus 557 v~~yD~~t~~-W~~v~~--~p~~--r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~-----v----~~lp~ 622 (680)
.|+|+..+.. =+.+.. +|.. ....++...++++|++-| +..|.||..+++=.. + +.+|
T Consensus 75 yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp- 146 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVP- 146 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSC-
T ss_pred EEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCCCC-
Confidence 7888754211 111222 2221 222222223689999976 457999987653211 1 1222
Q ss_pred CccceEEEEECCEEEEEecccCCCcccceEEEEcCC
Q 005735 623 SRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 658 (680)
Q Consensus 623 ~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~~ 658 (680)
..--++...++.+|+|-|. ..+.|++.
T Consensus 147 -~~idaa~~~~g~~Yffkg~--------~y~~~~~~ 173 (195)
T 1itv_A 147 -LDTHDVFQFREKAYFCQDR--------FYWRVSSR 173 (195)
T ss_dssp -SSCSEEEEETTEEEEEETT--------EEEEEECC
T ss_pred -CCCCEEEEeCCeEEEEeCC--------EEEEEECC
Confidence 2234555568999999874 34566654
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=66.91 E-value=1.9e+02 Score=33.52 Aligned_cols=184 Identities=13% Similarity=0.001 Sum_probs=98.1
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCC----eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCD----VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~----~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
++.||+.-... ..++++++... ....+... ......++++. ++.||+.-... ..|+++++...
T Consensus 435 ~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~-----~~I~v~~ldG~ 503 (791)
T 3m0c_C 435 SNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVL-----GTVSVADTKGV 503 (791)
T ss_dssp TTEEEEEETTT-----TEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTT-----TEEEEEETTSS
T ss_pred CCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEecCC-----CeEEEEeCCCC
Confidence 56677655422 34666666532 11222110 11222345554 67999986433 47899998876
Q ss_pred cEEECC--CCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceE-EEEE--CCEEEE
Q 005735 472 EWTSRP--SLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALA-AAEL--NGVLYA 544 (680)
Q Consensus 472 ~W~~l~--~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s-~~~~--~g~Lyv 544 (680)
..+.+. .+..|+ +.++ .++.||+..-. ....|+++++....-..+.. .....+. +++- +++||+
T Consensus 504 ~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g----~~~~I~~~~~dG~~~~~lv~--~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 504 KRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SEEEEEECTTCCEE---EEEEETTTTEEEEEECS----SSCEEEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEE
T ss_pred eEEEEEeCCCCCcc---eEEEecCCCCEEEecCC----CCCeEEEEecCCCceEEEEe--CCCCCceEEEEecCCCeEEE
Confidence 554442 222221 2333 25889997421 12568899887654333321 1112222 3333 689999
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccC-CCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANM-NRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~-p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
.-. ....|+++|+....-+.+... ..-....++++.++.||+.... ...|+.+|..+
T Consensus 575 aD~-----~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~-----~~~I~~~dk~t 632 (791)
T 3m0c_C 575 VDS-----KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLT 632 (791)
T ss_dssp EET-----TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT-----TTEEEEEETTT
T ss_pred EeC-----CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECC-----CCEEEEEeCCC
Confidence 843 235799999875543334221 1122335677789999998643 35677777544
No 286
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=66.68 E-value=2.6 Score=44.22 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=56.0
Q ss_pred EEECCEEEEEecCCCCCccceEEEEeCCCC--cEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCc-
Q 005735 442 AMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG- 518 (680)
Q Consensus 442 v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~--~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~- 518 (680)
++.++.||+.+. + ..++.+|..++ .|+.-. . ....+.++.++++|+.++.+ ..+.++|..++
T Consensus 6 ~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~ 70 (369)
T 2hz6_A 6 TLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNE 70 (369)
T ss_dssp --CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTT-----CCEEEC-----C
T ss_pred eeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCC-----CEEEEEECCCCc
Confidence 444677776543 2 36889998876 476543 1 11122344567788876543 34778898765
Q ss_pred -cEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc--EEEeccCCCCCceeEEEEECCEEEEEecc
Q 005735 519 -KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVLNGKLYALGGF 595 (680)
Q Consensus 519 -~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~~p~~r~~~s~v~~~~~IyviGG~ 595 (680)
.|..-...+.......+...++.||+ |+.+ ..++.+|+.+++ |+.-.... . ..+..++.||+ |+.
T Consensus 71 ~~w~~~~~~~~~~~~sp~~~~~~~v~~-g~~d-----g~v~a~D~~tG~~~w~~~~~~~-~----~~~p~~~~v~~-~~~ 138 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPCRSSDGILYM-GKKQ-----DIWYVIDLLTGEKQQTLSSAFA-D----SLSPSTSLLYL-GRT 138 (369)
T ss_dssp CSEECSCCHHHHHTTCSCC-----CCC-CEEE-----EEEEEECCC---------------------------EEE-EEE
T ss_pred eeeeeeccCccccccCceEecCCEEEE-EeCC-----CEEEEEECCCCcEEEEecCCCc-c----cccccCCEEEE-Eec
Confidence 46542222111111111113555553 4322 358889988754 65432111 0 11113444444 432
Q ss_pred CCCCCCCeEEEEeCCCC--cEEE
Q 005735 596 DGSAMVPSIEVYDPRLG--SWMS 616 (680)
Q Consensus 596 ~~~~~~~~v~~yD~~t~--~W~~ 616 (680)
+ ..+..||++++ .|+.
T Consensus 139 d-----g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 139 E-----YTITMYDTKTRELRWNA 156 (369)
T ss_dssp E-----EEEECCCSSSSSCCCEE
T ss_pred C-----CEEEEEECCCCCEEEeE
Confidence 2 34778887765 3764
No 287
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=63.61 E-value=21 Score=34.88 Aligned_cols=142 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred cCCCEEEEEecCCCCcccCeEEEEeCCC----C-----------eEEEcCCCC--CCccceEEEEECCEEEEEecCCCCC
Q 005735 396 DPSESIYLVGGCDGDSWLSTLELYLPSC----D-----------VIKTLKPMS--SARSYASAAMLNGELYIFGGGDGNS 458 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t----~-----------~W~~l~~mp--~~R~~~s~v~~~~~IyV~GG~~~~~ 458 (680)
...+.+|+|=|. .+|+++... + .|..|+... .....++.-..++++|+|-|
T Consensus 13 ~~~ge~yfFkg~-------~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg----- 80 (227)
T 3lp9_A 13 SKNNEAYFFIND-------KYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYE----- 80 (227)
T ss_dssp SSTTEEEEEETT-------EEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEET-----
T ss_pred CCCCeEEEEECC-------EEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeC-----
Confidence 447899999772 467776521 1 133332111 11222222235899999988
Q ss_pred ccceEEEEe--CCC-C-cEE----EC----CCCCC---CCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEE
Q 005735 459 WHNTVESYS--PAN-D-EWT----SR----PSLNG---TKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 459 ~~~~v~vyD--~~t-~-~W~----~l----~~lp~---~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
+.+|+|+ +.+ + .-. .+ +.||. +..--|+... ++++|+|-| +..++||..+++-.
T Consensus 81 --~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG-------~~yw~~d~~~~~~~ 151 (227)
T 3lp9_A 81 --NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG-------DQYARIDYGSNSMV 151 (227)
T ss_dssp --TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEETTTTEES
T ss_pred --CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC-------CEEEEEeCCCcccc
Confidence 3588888 321 1 110 11 22331 2122233333 689999976 46788887755321
Q ss_pred -----Ecc-cccc------cccceEEEE--ECCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 522 -----RTR-SMLQ------KRFALAAAE--LNGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 522 -----~i~-~~p~------~r~~~s~~~--~~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
.+. .+|. +..--++.. .++++|++-| +..|+||..++
T Consensus 152 ~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 152 NKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD-------DHYARVKVTPX 202 (227)
T ss_dssp SSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------TEEEEEECCSS
T ss_pred CCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC-------CEEEEEECCcc
Confidence 111 1221 111223333 3689999977 36789997765
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=62.72 E-value=1.5e+02 Score=30.72 Aligned_cols=213 Identities=12% Similarity=0.173 Sum_probs=106.7
Q ss_pred CeEEEEeCCCCeEEEcCCCCC------C-ccceEEEEE----CCEEEEEecCC------C--CCccceEEEEeCC---CC
Q 005735 414 STLELYLPSCDVIKTLKPMSS------A-RSYASAAML----NGELYIFGGGD------G--NSWHNTVESYSPA---ND 471 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~------~-R~~~s~v~~----~~~IyV~GG~~------~--~~~~~~v~vyD~~---t~ 471 (680)
..+.++|+..+.-..+ ..+. + ....++.+. .+.|+|+.-.. + ......+.+||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC
Confidence 4688999986654444 2221 1 223445552 57888853210 1 1124679999987 44
Q ss_pred --cEEE-CCCCCC--------CCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc---EEEcccccccccce-E
Q 005735 472 --EWTS-RPSLNG--------TKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK---WIRTRSMLQKRFAL-A 534 (680)
Q Consensus 472 --~W~~-l~~lp~--------~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~---W~~i~~~p~~r~~~-s 534 (680)
.|.. ++.... ....+--.++ +|.+||.+... +..|+++++.... |-.-.+....+.+. .
T Consensus 114 ~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nG 189 (334)
T 2p9w_A 114 KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----MPAIARVSADGKTVSTFAWESGNGGQRPGYSG 189 (334)
T ss_dssp CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----SCEEEEECTTSCCEEEEEECCCCSSSCCSCSE
T ss_pred CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----CCeEEEEeCCCCEEeeeeecCCCcccccCcce
Confidence 3432 111110 1112222334 67899975422 1568899988652 54333323334444 4
Q ss_pred EEEE-CC-EEEEEcCCCCCCcCceeEEEeCCCCcEEEeccC--C---CCCceeE--EEEECCEEEEEeccCCCCCCCeEE
Q 005735 535 AAEL-NG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANM--N---RRRGCHS--LAVLNGKLYALGGFDGSAMVPSIE 605 (680)
Q Consensus 535 ~~~~-~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~--p---~~r~~~s--~v~~~~~IyviGG~~~~~~~~~v~ 605 (680)
++.. ++ .|++..+ . ..+++||..+.....++.. . .....-. ....+++++++... .+.++
T Consensus 190 Iv~~pdg~~Liv~~~-~-----g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~-----~~~~~ 258 (334)
T 2p9w_A 190 ITFDPHSNKLIAFGG-P-----RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR-----APYAI 258 (334)
T ss_dssp EEEETTTTEEEEESS-S-----SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE-----TTEEE
T ss_pred EEEeCCCCEEEEEcC-C-----CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC-----CCCEE
Confidence 4445 34 5666544 3 3688999875433112110 0 1111112 22368887555432 12334
Q ss_pred EEeCCCCcEEEcC---CCCC---CccceEEEE----ECCEEEEEeccc
Q 005735 606 VYDPRLGSWMSGE---PMKL---SRGYLGAAV----VKEAIYVIGGVK 643 (680)
Q Consensus 606 ~yD~~t~~W~~v~---~lp~---~R~~~s~v~----~~~~lyV~GG~~ 643 (680)
++-...+ |+... ..|. ++....+++ .+++||++.+.-
T Consensus 259 ~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 259 SFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCG
T ss_pred EEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeec
Confidence 4444444 87632 2222 455555555 678999998654
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=62.15 E-value=1e+02 Score=32.73 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=77.5
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCE-EEEEccCCCCcccceEEEEeCCCccEE
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWI 521 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gk-IyV~GG~~~~~~~~~ve~yD~~t~~W~ 521 (680)
++.||+.--. ..+.++|+.+++...+.. .-.......+ +++ ||+.....+ .....+..++.. +.|.
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~-~~~~~v~~~~~~-g~~~ 217 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNN-NDRPNNYILTRE-SGFK 217 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSC-TTSEEEEEEEGG-GTSC
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCC-cccceEEEEeCC-Ccee
Confidence 4788887542 578999999988876643 1122333333 444 999865332 112245556653 3332
Q ss_pred EcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE-C-CEEEEEeccCC
Q 005735 522 RTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-N-GKLYALGGFDG 597 (680)
Q Consensus 522 ~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~-~-~~IyviGG~~~ 597 (680)
....++.....+.+++. ++.||+.--. ...+++||+.+..-..+...+.......++.. + +.||+....
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-- 290 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSWN-----AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-- 290 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEETT-----TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT--
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC--
Confidence 11111111222333333 5788887422 24799999987765444433322222334443 3 458888542
Q ss_pred CCCCCeEEEEeCC
Q 005735 598 SAMVPSIEVYDPR 610 (680)
Q Consensus 598 ~~~~~~v~~yD~~ 610 (680)
.+.|++|+..
T Consensus 291 ---~~~I~~~~~d 300 (430)
T 3tc9_A 291 ---QHYILRSDYD 300 (430)
T ss_dssp ---TTEEEEEEEE
T ss_pred ---CCEEEEEeCC
Confidence 3567776654
No 290
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=62.03 E-value=1.1e+02 Score=31.85 Aligned_cols=78 Identities=8% Similarity=0.087 Sum_probs=48.8
Q ss_pred CCEEEEEec-c-CCC-CCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEE-CC-EEEEEecccCCCcccceEEEEcCCCC
Q 005735 586 NGKLYALGG-F-DGS-AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KE-AIYVIGGVKNGSEIVDTVERFKEGQG 660 (680)
Q Consensus 586 ~~~IyviGG-~-~~~-~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~-~~-~lyV~GG~~~~~~~~~~ve~y~~~~~ 660 (680)
++++|+... . ... .....+.++|+.+. +.+..++.+...++++.. ++ ++|+..+... ++|-++|. .+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~-----~~VsVID~-~t 346 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPISNGHDSDAIIAAQDGASDNYANSAGT-----EVLDIYDA-AS 346 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCEEEEEECEEEECCSSSCEEEEEETTT-----TEEEEEES-SS
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCC--eEEEEEECCCCcceEEECCCCCEEEEEccCCC-----CeEEEEEC-CC
Confidence 567887532 1 100 00123569998775 456667766666666665 44 4777766322 46889988 78
Q ss_pred eEecccCCCCC
Q 005735 661 WEEINSRAIGK 671 (680)
Q Consensus 661 W~~v~~~p~~~ 671 (680)
|+.+...++|.
T Consensus 347 ~kvv~~I~vg~ 357 (368)
T 1mda_H 347 DQDQSSVELDK 357 (368)
T ss_dssp CEEEEECCCCS
T ss_pred CcEEEEEECCC
Confidence 89998888883
No 291
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=61.02 E-value=2.3 Score=44.58 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=43.4
Q ss_pred EEECCEEEEEccCCCCcccceEEEEeCCCcc--EEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCC-
Q 005735 489 ATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH- 565 (680)
Q Consensus 489 ~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~--W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~- 565 (680)
++.++.||+.+. + ..+..+|..+++ |+.-. ... ....+..++++|+.++.++ .++.+|..++
T Consensus 6 ~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~~~--~s~p~~~~g~~~v~~s~dg-----~l~a~d~~tG~ 70 (369)
T 2hz6_A 6 TLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--DPV--LQVPTHVEEPAFLPDPNDG-----SLYTLGSKNNE 70 (369)
T ss_dssp --CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--CCS--CCCC-----CCEEECTTTC-----CEEEC-----C
T ss_pred eeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--CCc--eecceEcCCCEEEEeCCCC-----EEEEEECCCCc
Confidence 344667776532 2 358899988774 76543 111 1222345677888765443 5888888654
Q ss_pred -cEEEeccCCCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCCC--cEEE
Q 005735 566 -YWTKIANMNRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMS 616 (680)
Q Consensus 566 -~W~~v~~~p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t~--~W~~ 616 (680)
.|+.-...+... ..+.+. .++.|| +|+.+ ..++.+|++++ .|+.
T Consensus 71 ~~w~~~~~~~~~~-~~sp~~~~~~~v~-~g~~d-----g~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 71 GLTKLPFTIPELV-QASPCRSSDGILY-MGKKQ-----DIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp CSEECSCCHHHHH-TTCSCC-----CC-CCEEE-----EEEEEECCC--------
T ss_pred eeeeeeccCcccc-ccCceEecCCEEE-EEeCC-----CEEEEEECCCCcEEEEe
Confidence 465321111000 011111 344444 34322 35888888765 3543
No 292
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=60.75 E-value=1.5e+02 Score=30.21 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=100.9
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
++.||+.--. ...++++++.......+..... ....++++. ++.||+.-... ..++++++....-+.
T Consensus 84 ~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~~-~~p~glavd~~~g~ly~~d~~~-----~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 84 RELVFWSDVT-----LDRILRANLNGSNVEEVVSTGL-ESPGGLAVDWVHDKLYWTDSGT-----SRIEVANLDGAHRKV 152 (349)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEE
T ss_pred ccEEEEEecc-----CCceEEEecCCCCceEEEeCCC-CCccEEEEecCCCeEEEEcCCC-----CeEEEEcCCCCceEE
Confidence 6677765432 2457888887665444321111 122345554 78999886532 468888887654333
Q ss_pred CC--CCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEccccccccc-ceEEEEE--CCEEEEEcCC
Q 005735 476 RP--SLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRF-ALAAAEL--NGVLYATGGY 548 (680)
Q Consensus 476 l~--~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~-~~s~~~~--~g~Lyv~GG~ 548 (680)
+. .+..| .+.++- ++.||+..-.. ...++++++....-..+.. .... ..+++.- +++||+.-..
T Consensus 153 l~~~~l~~P---~~iavdp~~g~ly~td~~~----~~~I~r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCc---ceEEEecCcCeEEEeccCC----CCEEEEEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECC
Confidence 21 22222 123333 67899874321 3678999987654333321 1112 2233433 7899998432
Q ss_pred CCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCC
Q 005735 549 DGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL 611 (680)
Q Consensus 549 ~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t 611 (680)
...|+++|+....-+.+.... ...-.++++.++.||+.... ...|..+|..+
T Consensus 224 -----~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~-----~~~V~~~~~~~ 275 (349)
T 3v64_C 224 -----HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH-----TKSINSANKFT 275 (349)
T ss_dssp -----TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT-----TTEEEEEETTT
T ss_pred -----CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecCC-----CCeEEEEEccC
Confidence 357899998754333332211 12335666688999998642 35688888544
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=60.59 E-value=78 Score=36.13 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=81.4
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCcEEECCC--CCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS--LNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~--lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
.++.||+.-.. ...|+++++....-+.+.. +..|+ +.++ .++.||+..-. ....|+++++....
T Consensus 463 ~~g~LY~tD~~-----~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 463 IHSNIYWTDSV-----LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVD 530 (699)
T ss_dssp SSSBCEECCTT-----TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----SSCCEEBCCSSSCC
T ss_pred eCCcEEEEecc-----CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----CCCeEEEEeCCCCC
Confidence 36789986432 2468899987765444322 22222 2222 25778886421 12567777776543
Q ss_pred EEEcccccccccce-EEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCC-CCCceeEEEEECCEEEEEecc
Q 005735 520 WIRTRSMLQKRFAL-AAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVLNGKLYALGGF 595 (680)
Q Consensus 520 W~~i~~~p~~r~~~-s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p-~~r~~~s~v~~~~~IyviGG~ 595 (680)
-..+... ....+ ++++- +++||+.-.. ...|+++|+....-+.+.... ......++++.++.||+....
T Consensus 531 ~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~ 603 (699)
T 1n7d_A 531 IYSLVTE--NIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 603 (699)
T ss_dssp CCEESCS--SCSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST
T ss_pred eeEEEeC--CCCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC
Confidence 2222111 11112 23332 5789987432 357899998754444443221 112234566678899998632
Q ss_pred CCCCCCCeEEEEeCCCCcEEE
Q 005735 596 DGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 596 ~~~~~~~~v~~yD~~t~~W~~ 616 (680)
...|.++|+.+.+-..
T Consensus 604 -----~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 604 -----NEAIFSANRLTGSDVN 619 (699)
T ss_dssp -----TTCEEEEETTTEEEEE
T ss_pred -----CCeEEEEEccCCCceE
Confidence 3578999987654433
No 294
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=59.17 E-value=1.5e+02 Score=29.74 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=68.7
Q ss_pred cceEEEcCCCEEEEEec-CCCCcccCeEEEEeCCCCeEEEcCCCC-C----CccceEEEEE-CCEEEEEecCCCCCccce
Q 005735 390 SDELHLDPSESIYLVGG-CDGDSWLSTLELYLPSCDVIKTLKPMS-S----ARSYASAAML-NGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG-~~~~~~~~~v~~yd~~t~~W~~l~~mp-~----~R~~~s~v~~-~~~IyV~GG~~~~~~~~~ 462 (680)
....++.+++++|+... +.+.. ..++.++ ++.....+... . -..-+++++. ++.|||..-.........
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 34566777889998853 22211 4678887 55555444211 1 1233444444 588999762210001246
Q ss_pred EEEEeCCCCcEEECCCCC----CCCcc-cEEEEE--CCEEEEEccCCCCcccceEEEEeCCCcc-EEEc
Q 005735 463 VESYSPANDEWTSRPSLN----GTKGS-LAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGK-WIRT 523 (680)
Q Consensus 463 v~vyD~~t~~W~~l~~lp----~~r~~-~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W~~i 523 (680)
+.+||+.+++....-.++ .+... ...++- ++.+|+..... .....+.+||+.+++ |..+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--DDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--GGGCEEEEEETTTCCEEEEC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--CCCCeEEEEECCCCCEEEEe
Confidence 999999988743221221 11112 233333 46888874211 124578899998664 5544
No 295
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=58.98 E-value=1.1e+02 Score=33.02 Aligned_cols=147 Identities=13% Similarity=0.087 Sum_probs=79.3
Q ss_pred ceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEE--c----CCCCCCccceEEEEE--CCEEEEEecCCCCCccce
Q 005735 391 DELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKT--L----KPMSSARSYASAAML--NGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 391 ~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~--l----~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~ 462 (680)
.+++. ..+.+|+|-|. .+|+++.....+.. + +.+|. ..-++... ++++|+|=| +.
T Consensus 266 DAi~~-~~ge~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~Wp~LP~--~iDAa~~~~~~g~~~fFKg-------~~ 328 (450)
T 1su3_A 266 DAITT-IRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPN--GLEAAYEFADRDEVRFFKG-------NK 328 (450)
T ss_dssp SEEEE-ETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCS--SCCEEEEEGGGTEEEEEET-------TE
T ss_pred ceEEe-cCCeEEEEeCC-------EEEEEcCCCCcccceehhHhccCCCC--CeeEEEEEcCCCeEEEEeC-------CE
Confidence 34443 48899999883 46666654433221 1 12232 12223333 689999987 35
Q ss_pred EEEEeCCCC--cE-EECC---CCCCCCccc-EEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEE-----Ec----c
Q 005735 463 VESYSPAND--EW-TSRP---SLNGTKGSL-AGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWI-----RT----R 524 (680)
Q Consensus 463 v~vyD~~t~--~W-~~l~---~lp~~r~~~-a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~-----~i----~ 524 (680)
+|+|+..+- .+ +.+. .+|...... ++... ++++|+|-| +..++||..+.+-. .+ +
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fp 401 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFP 401 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 788874321 00 0110 122211122 33333 589999976 46788887654321 11 1
Q ss_pred cccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe
Q 005735 525 SMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 570 (680)
Q Consensus 525 ~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v 570 (680)
.+|. .--++...++++|+|-| +..|+||..+.+-...
T Consensus 402 gip~--~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 402 GIGH--KVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp TSCS--CCSEEEEETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCCC--CccEEEEcCCeEEEEeC-------CEEEEEECCcceEecc
Confidence 2222 22334456899999976 4679999887765543
No 296
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=58.13 E-value=1.2e+02 Score=33.89 Aligned_cols=255 Identities=9% Similarity=0.017 Sum_probs=133.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE----CCEEEEEecCC------------CCCccc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML----NGELYIFGGGD------------GNSWHN 461 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~----~~~IyV~GG~~------------~~~~~~ 461 (680)
+..+|+--. ..+.+.++|+.+.+-..+-.+|.....|.++.. +++||+.+... .+...+
T Consensus 101 G~~lfVnd~-----~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 101 GRFLFMNDK-----ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEET-----TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCEEEEEcC-----CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 455666332 235689999999887665567777777777752 67888876432 133456
Q ss_pred eEEEEeCCCCc--EEECCCCCCCCcccEEEEECC-EEEEEccCC-------------------------------C-Ccc
Q 005735 462 TVESYSPANDE--WTSRPSLNGTKGSLAGATIDN-KIFAIGGGN-------------------------------G-LEC 506 (680)
Q Consensus 462 ~v~vyD~~t~~--W~~l~~lp~~r~~~a~~v~~g-kIyV~GG~~-------------------------------~-~~~ 506 (680)
.+-+.|..+.+ |+..-. . ......+..+| .+|+.--.. + ...
T Consensus 176 ~vtvID~~t~~v~~qI~Vg--g-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVS--G-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEETTTTEEEEEEEES--S-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred eEEEEECCCCeEEEEEEeC--C-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 78889998864 443211 0 11111111222 233322110 0 112
Q ss_pred cceEEEEeCCCccEEE-cccccccccceEEEEE-CC-EEEEEcCCCCCCcCceeEEEeCCCCc-E---------EEeccC
Q 005735 507 FSDVEMLDLDIGKWIR-TRSMLQKRFALAAAEL-NG-VLYATGGYDGNEYMNSAERFDPREHY-W---------TKIANM 573 (680)
Q Consensus 507 ~~~ve~yD~~t~~W~~-i~~~p~~r~~~s~~~~-~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~-W---------~~v~~~ 573 (680)
.+.+-+.|..+.+... +..+|.+..-|++..- +| .+|+.+... +.+.+||..+.. + ..+...
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s-----~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS-----PTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS-----SBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC-----CeEEEEECcccccccccccCcccceEEEc
Confidence 3457788888743323 3344444444555444 44 466655433 578899987542 1 112233
Q ss_pred CCCCceeEEEE-ECCEEEEEeccCCCCCCCeEEEEeCCC--------CcEEEcCCCCCCcc-ceEEEEE-------CCEE
Q 005735 574 NRRRGCHSLAV-LNGKLYALGGFDGSAMVPSIEVYDPRL--------GSWMSGEPMKLSRG-YLGAAVV-------KEAI 636 (680)
Q Consensus 574 p~~r~~~s~v~-~~~~IyviGG~~~~~~~~~v~~yD~~t--------~~W~~v~~lp~~R~-~~s~v~~-------~~~l 636 (680)
+....-..++. -+|.+|+.-.. -+.|.++|.++ +.+..+..++..-. +|..+.. +..|
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred CCCCCcceEEECCCCeEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 33333333333 35677877543 35677788765 33555555544322 2332221 4457
Q ss_pred EEEecccCCCc-----c-cceEEEEcCC-CCeEecccCCCC
Q 005735 637 YVIGGVKNGSE-----I-VDTVERFKEG-QGWEEINSRAIG 670 (680)
Q Consensus 637 yV~GG~~~~~~-----~-~~~ve~y~~~-~~W~~v~~~p~~ 670 (680)
|+.-+...+.- . -..-.+|+.+ ++=+.+...|++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~ 443 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTF 443 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEES
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcCC
Confidence 77666553211 1 1223677776 667777777765
No 297
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=57.22 E-value=3 Score=30.63 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=22.6
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHHhHhhhHH
Q 005735 314 IETCSSSRCQSIINELIKEVAELKAFKTEQTLKM 347 (680)
Q Consensus 314 ~~~~~~r~~~~~l~~V~K~wrsl~~~~~i~s~el 347 (680)
++...+......++.|||+|+.+ +.++.+
T Consensus 20 I~~~L~~~dl~~~~~Vck~w~~~-----~~~~~l 48 (53)
T 1fs1_A 20 IFSCLCLPELLKVSGVCKRWYRL-----ASDESL 48 (53)
T ss_dssp HHTTSCGGGHHHHHTTCHHHHHH-----HTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH-----hCChHH
Confidence 36666777777999999999999 665554
No 298
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=55.60 E-value=2.5e+02 Score=31.98 Aligned_cols=200 Identities=10% Similarity=-0.069 Sum_probs=92.4
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCC-cEEECCCCCCCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCccE-
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPAND-EWTSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGKW- 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~-~W~~l~~lp~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~W- 520 (680)
+++.++++-...+.....++++|..++ +. ++.. ........+.. ++ .|+... .+.......++..++.+..-
T Consensus 185 DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~-~~~~~~~~~WspDg~~l~y~~-~d~~~~~~~v~~~~lgt~~~~ 260 (751)
T 2xe4_A 185 EHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADK-VSGTNGEIVWGPDHTSLFYVT-KDETLRENKVWRHVMGKLQSE 260 (751)
T ss_dssp TTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCC-EEEECSCCEECSSTTEEEEEE-ECTTCCEEEEEEEETTSCGGG
T ss_pred CCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcc-ccCceeeEEEecCCCEEEEEE-ECCCCCCCEEEEEECCCCchh
Confidence 566555543322222346999999887 52 1110 01111112222 44 344432 22222234677788776531
Q ss_pred -EEcccccccccceEEEEE-CCE-EEEEcCCCCCCcCceeEEEeCCCC--cE--EEeccCCCCCceeEEE-EECCEEEEE
Q 005735 521 -IRTRSMLQKRFALAAAEL-NGV-LYATGGYDGNEYMNSAERFDPREH--YW--TKIANMNRRRGCHSLA-VLNGKLYAL 592 (680)
Q Consensus 521 -~~i~~~p~~r~~~s~~~~-~g~-Lyv~GG~~~~~~~~~v~~yD~~t~--~W--~~v~~~p~~r~~~s~v-~~~~~Iyvi 592 (680)
..+-.-+...+....... +++ |++... . ...+.++++|+.+. .+ +.+..-... ..++.. ..++.||+.
T Consensus 261 ~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~-~--~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~ 336 (751)
T 2xe4_A 261 DVCLYEEHNPLFSAFMYKAADTNTLCIGSQ-S--PETAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVIL 336 (751)
T ss_dssp CEEEEECCCTTCEEEEEECTTSSEEEEEEE-C--SSCEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEEE
T ss_pred cEEEEecCCCceEEEEEECCCCCEEEEEec-C--CCCceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEEE
Confidence 111111112222221111 444 444432 2 12468999998875 46 655322111 112222 227788888
Q ss_pred eccCCCCCCCeEEEEeCCC-CcEEE-cCCCCCCccceEEEEECCEEEEEecccCCCcccceEEEEcC
Q 005735 593 GGFDGSAMVPSIEVYDPRL-GSWMS-GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKE 657 (680)
Q Consensus 593 GG~~~~~~~~~v~~yD~~t-~~W~~-v~~lp~~R~~~s~v~~~~~lyV~GG~~~~~~~~~~ve~y~~ 657 (680)
...+ ......++.+|..+ ..|.. +-+-............++.|++..-.+. ...+++++.
T Consensus 337 t~~~-~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl 398 (751)
T 2xe4_A 337 TNEG-GAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMA 398 (751)
T ss_dssp ECTT-TCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT----EEEEEEEEC
T ss_pred eCCC-CCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEec
Confidence 6543 11235789999876 57876 4221111122233344677766654332 245666664
No 299
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=53.27 E-value=2.4e+02 Score=30.17 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=98.5
Q ss_pred CCeEE--EcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEEe------CCCC-cEEECCCC-CCCCcccEEEEEC
Q 005735 423 CDVIK--TLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYS------PAND-EWTSRPSL-NGTKGSLAGATID 492 (680)
Q Consensus 423 t~~W~--~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vyD------~~t~-~W~~l~~l-p~~r~~~a~~v~~ 492 (680)
...|+ .|+..|..-.-|+.+.+++.-|++|=.++......+-++- .-.+ .-+.++.- -..-...+.-.++
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYd 348 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYD 348 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEET
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhC
Confidence 34454 4566777778899999998888988666544333333221 1111 12333322 1222334556679
Q ss_pred CEEEEEcc-CCCCcccceEEEEeCCCccEEEccccc-ccccceEEEEECCEEEEEcCC------CC----CC----cCce
Q 005735 493 NKIFAIGG-GNGLECFSDVEMLDLDIGKWIRTRSML-QKRFALAAAELNGVLYATGGY------DG----NE----YMNS 556 (680)
Q Consensus 493 gkIyV~GG-~~~~~~~~~ve~yD~~t~~W~~i~~~p-~~r~~~s~~~~~g~Lyv~GG~------~~----~~----~~~~ 556 (680)
|++|+.-- ......-+.+.+-+.....|+.+.-.. .-....-.+.+++.|||||-- ++ .. +...
T Consensus 349 gvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yPRt 428 (670)
T 3ju4_A 349 GVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRT 428 (670)
T ss_dssp TEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEE
T ss_pred CEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEeccccccccccCCCcccccccCCce
Confidence 99998854 333344567788888888999875322 222334457789999999842 11 11 1111
Q ss_pred e-EE-----EeCCCCcEEEecc-------CCCCCceeEEEEECCEEE-EEecc
Q 005735 557 A-ER-----FDPREHYWTKIAN-------MNRRRGCHSLAVLNGKLY-ALGGF 595 (680)
Q Consensus 557 v-~~-----yD~~t~~W~~v~~-------~p~~r~~~s~v~~~~~Iy-viGG~ 595 (680)
+ .+ |..+.-+|..+.+ ........++|+-++.|| ++||.
T Consensus 429 F~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgE 481 (670)
T 3ju4_A 429 FYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGE 481 (670)
T ss_dssp EEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEB
T ss_pred EEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCc
Confidence 1 12 3334557888743 233444456666688875 56764
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=53.20 E-value=2.8e+02 Score=31.01 Aligned_cols=198 Identities=12% Similarity=0.019 Sum_probs=112.4
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEE-
Q 005735 414 STLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT- 490 (680)
Q Consensus 414 ~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v- 490 (680)
..+.++|..+..-..+-+++..+...+++.. ++.||+..-.. ..++++++.....+.+..... ..-.+.++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD 88 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGL-DYPEGMAVD 88 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC-SCCCEEEEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCC-CCcceEEEE
Confidence 3577777776543333333333444555554 68999986532 468888887655544322111 11123333
Q ss_pred -ECCEEEEEccCCCCcccceEEEEeCCCccEEEc--ccccccccceEEEEE--CCEEEEEc-CCCCCCcCceeEEEeCCC
Q 005735 491 -IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT--RSMLQKRFALAAAEL--NGVLYATG-GYDGNEYMNSAERFDPRE 564 (680)
Q Consensus 491 -~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i--~~~p~~r~~~s~~~~--~g~Lyv~G-G~~~~~~~~~v~~yD~~t 564 (680)
.+++||+... ....++++++....=..+ ..+..| ..+++- +|.||+.- |. ...|++.++..
T Consensus 89 ~~~~~LY~tD~-----~~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~-----~~~I~r~~~dG 155 (628)
T 4a0p_A 89 WLGKNLYWADT-----GTNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG-----KPKIDRAAMDG 155 (628)
T ss_dssp TTTTEEEEEET-----TTTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTS
T ss_pred eCCCEEEEEEC-----CCCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC-----CCEEEEEeCCC
Confidence 4789999843 235788999876542222 223222 234444 68999874 21 34788888876
Q ss_pred CcEEEeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcC-CCCCCccceEEEEECCEEEEEe
Q 005735 565 HYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE-PMKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 565 ~~W~~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~-~lp~~R~~~s~v~~~~~lyV~G 640 (680)
..-+.+.. .-....++++- +++||+.... .+.|+.+|+....=+.+. .++ ...++++.++.||+.-
T Consensus 156 ~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~-----~~~I~~~d~dG~~~~v~~~~l~---~P~glav~~~~ly~tD 224 (628)
T 4a0p_A 156 SERTTLVP--NVGRANGLTIDYAKRRLYWTDLD-----TNLIESSNMLGLNREVIADDLP---HPFGLTQYQDYIYWTD 224 (628)
T ss_dssp CSCEEEEC--SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECCS---CEEEEEEETTEEEEEE
T ss_pred CceEEEEC--CCCCcceEEEccccCEEEEEECC-----CCEEEEEcCCCCceEEeeccCC---CceEEEEECCEEEEec
Confidence 65554432 11222344443 6889998643 457899998654323332 222 3457777888888875
No 301
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=52.23 E-value=1.7e+02 Score=28.18 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=74.5
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeE--EEcC----CCCCCccceEEEEECCEEEEEecCCCCCccceE
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVI--KTLK----PMSSARSYASAAMLNGELYIFGGGDGNSWHNTV 463 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W--~~l~----~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v 463 (680)
+.+++....+.+|+|=|. .+|+++.....+ ..+. .+|. ... ++...++++|+|-| +.+
T Consensus 20 ~DAi~~~~~g~~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~~~~~yfFkG-------~~y 83 (219)
T 1hxn_A 20 LSAMVSDNHGATYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSWEDKLYLIQD-------TKV 83 (219)
T ss_dssp CCEEEECTTSCEEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEETTEEEEEET-------TEE
T ss_pred EeEEEECCCCcEEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEECCcEEEecC-------CEE
Confidence 344554458889988873 466666443211 1221 2332 222 33345899999987 468
Q ss_pred EEEeCCCCcEEECC----------CCCCC--Cccc-EEEEE--CCEEEEEccCCCCcccceEEEEeCCCc---cEEEccc
Q 005735 464 ESYSPANDEWTSRP----------SLNGT--KGSL-AGATI--DNKIFAIGGGNGLECFSDVEMLDLDIG---KWIRTRS 525 (680)
Q Consensus 464 ~vyD~~t~~W~~l~----------~lp~~--r~~~-a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~---~W~~i~~ 525 (680)
|+|+..++. +..+ .+|.. .... ++... ++++|.|-| +..+.||..+. .|...+-
T Consensus 84 w~~~~~~~~-~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g 155 (219)
T 1hxn_A 84 YVFLTKGGY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPW 155 (219)
T ss_dssp EEEECSSSC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECC
T ss_pred EEEeCCCCc-eecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCC
Confidence 999875321 1111 12222 1112 33323 588999976 45678886543 3433332
Q ss_pred ccccccceEEEE-----------ECCEEEEEcCCCCCCcCceeEEEeCC
Q 005735 526 MLQKRFALAAAE-----------LNGVLYATGGYDGNEYMNSAERFDPR 563 (680)
Q Consensus 526 ~p~~r~~~s~~~-----------~~g~Lyv~GG~~~~~~~~~v~~yD~~ 563 (680)
+|.. ...+... .++.+|++-| +..++||..
T Consensus 156 ~p~~-vdAa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~ 196 (219)
T 1hxn_A 156 PHEK-VDGALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHV 196 (219)
T ss_dssp SCSC-CSEEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSH
T ss_pred CCCC-cCEEEEccccccccceeccCCeEEEEEC-------CEEEEEeCC
Confidence 2222 2222221 3467999876 356777654
No 302
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=51.73 E-value=2.5e+02 Score=29.99 Aligned_cols=126 Identities=21% Similarity=0.196 Sum_probs=80.2
Q ss_pred CCCcEE--ECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEE-eCC------CccEEEccc-ccccccceEEEEE
Q 005735 469 ANDEWT--SRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEML-DLD------IGKWIRTRS-MLQKRFALAAAEL 538 (680)
Q Consensus 469 ~t~~W~--~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~y-D~~------t~~W~~i~~-~p~~r~~~s~~~~ 538 (680)
..+.|+ .++.+|....-|+.|.+++.-|++|-.++......+-.+ -+. .-.=+.++. ....-..+++-.+
T Consensus 268 ~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY 347 (670)
T 3ju4_A 268 HKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYY 347 (670)
T ss_dssp TTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEE
T ss_pred ccCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhh
Confidence 345675 456677667789999999998999877666555544332 111 111122322 2223345566678
Q ss_pred CCEEEEEc-CCCCCCcCceeEEEeCCCCcEEEecc-CCCCCceeEEEEECCEEEEEec
Q 005735 539 NGVLYATG-GYDGNEYMNSAERFDPREHYWTKIAN-MNRRRGCHSLAVLNGKLYALGG 594 (680)
Q Consensus 539 ~g~Lyv~G-G~~~~~~~~~v~~yD~~t~~W~~v~~-~p~~r~~~s~v~~~~~IyviGG 594 (680)
+|.||+.- |......-+.+.+-+.....|..+.- -.........+..++.||++|-
T Consensus 348 dgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 348 DGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp TTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEE
T ss_pred CCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEec
Confidence 99999985 34444566678888888889998842 2233334456788999999985
No 303
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=51.14 E-value=2.3e+02 Score=29.44 Aligned_cols=147 Identities=15% Similarity=0.072 Sum_probs=77.4
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEeCCCCcE--EEC----CCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEE
Q 005735 440 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW--TSR----PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVE 511 (680)
Q Consensus 440 s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W--~~l----~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve 511 (680)
+++.+++++|+|=|. .+|+++.....- ..+ +.+|. .-. |+... ++++|+|-| +..+
T Consensus 185 Av~~~~g~~~fFkg~-------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg-------~~yW 248 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR-------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD-------DKYW 248 (365)
T ss_dssp CEEEETTEEEEEETT-------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEEcCCeEEEEeCC-------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-------CEEE
Confidence 345579999999773 356665433210 111 23331 122 33333 789999966 3455
Q ss_pred EEeCCCcc--E-EEccc--cccc-ccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEE-----ecc-CC-CC
Q 005735 512 MLDLDIGK--W-IRTRS--MLQK-RFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTK-----IAN-MN-RR 576 (680)
Q Consensus 512 ~yD~~t~~--W-~~i~~--~p~~-r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-----v~~-~p-~~ 576 (680)
+|+..... + ..+.. +|.. ..--++... ++++|+|-| +..|+||..+.+-.. +.. .| .+
T Consensus 249 r~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~g~p 321 (365)
T 3ba0_A 249 LISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQGIG 321 (365)
T ss_dssp ECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHSTTCC
T ss_pred EEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCCCCC
Confidence 55533211 1 12222 2321 112233333 589999976 468999976654221 100 11 12
Q ss_pred CceeEEEEE-CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE
Q 005735 577 RGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 616 (680)
Q Consensus 577 r~~~s~v~~-~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~ 616 (680)
...-++... ++++|.+-| +..|.||..+.+-..
T Consensus 322 ~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 322 PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 223344445 889999977 458999998766544
No 304
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=50.18 E-value=2.1e+02 Score=28.72 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=49.2
Q ss_pred ceEEEEeCC-CccEEEcccc--cccccceEEEEE--CC-EEEEEcCCCCCCcCceeEE--EeCCCCcEE----EeccCCC
Q 005735 508 SDVEMLDLD-IGKWIRTRSM--LQKRFALAAAEL--NG-VLYATGGYDGNEYMNSAER--FDPREHYWT----KIANMNR 575 (680)
Q Consensus 508 ~~ve~yD~~-t~~W~~i~~~--p~~r~~~s~~~~--~g-~Lyv~GG~~~~~~~~~v~~--yD~~t~~W~----~v~~~p~ 575 (680)
+.+.+||.. +++...+... +..-.....+.+ +| .+|+.+..+ +.+.+ +|..+++.. .+..+|.
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG-----NRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC-----CeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 468899988 7776544322 111122222333 44 577764322 24444 455566543 3444543
Q ss_pred CC-----------ceeEEE-EE-CC-EEEEEeccCCCCCCCeEEEEeCC-CCcEEE
Q 005735 576 RR-----------GCHSLA-VL-NG-KLYALGGFDGSAMVPSIEVYDPR-LGSWMS 616 (680)
Q Consensus 576 ~r-----------~~~s~v-~~-~~-~IyviGG~~~~~~~~~v~~yD~~-t~~W~~ 616 (680)
.. ....++ .. ++ .||+.....+......+.+|++. ++....
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 21 122333 22 44 56655422111122368888875 555553
No 305
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=49.87 E-value=2.5e+02 Score=31.14 Aligned_cols=193 Identities=10% Similarity=0.010 Sum_probs=86.8
Q ss_pred eEEEEeCCCCeE---EEcCCCC---CCccceEEEEE--CCEEEEEecCCCCCccceEEEEe----CCCCcEEECCC----
Q 005735 415 TLELYLPSCDVI---KTLKPMS---SARSYASAAML--NGELYIFGGGDGNSWHNTVESYS----PANDEWTSRPS---- 478 (680)
Q Consensus 415 ~v~~yd~~t~~W---~~l~~mp---~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD----~~t~~W~~l~~---- 478 (680)
.++++|..++.- ..+.... ........+.+ ++++++..... ......++++| ..++++..+..
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~-~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~ 303 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR-VQNVSVLSICDFREDWQTWDCPKTQEHIEE 303 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES-STTEEEEEEEEECSSSSSEECCGGGEEEEE
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc-ccCeEEEEEEcccCCCCCCceEEEEecccc
Confidence 678888887652 2332210 11112222223 67766653221 12235688899 77766544321
Q ss_pred CCCCCcc-----cEEEEECCE-EEEE-ccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCC-C
Q 005735 479 LNGTKGS-----LAGATIDNK-IFAI-GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYD-G 550 (680)
Q Consensus 479 lp~~r~~-----~a~~v~~gk-IyV~-GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~-~ 550 (680)
-...... .....-+|+ |++. ...++ ...++.+|+.+++...+..-.......... -++.||+.+... .
T Consensus 304 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 304 SRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp CSSSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred cCCceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCC
Confidence 1111111 112223555 4443 32222 356889999888766554322111111222 344566655320 1
Q ss_pred CCcCceeEEEeCCCC--cEEEecc-CCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 551 NEYMNSAERFDPREH--YWTKIAN-MNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 551 ~~~~~~v~~yD~~t~--~W~~v~~-~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
......+|..+..++ ..+.+.. ++........+.+ +++.+++.+.... ...+++||+.++..
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~--~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG--IPISTLHDGRTDQE 446 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS--SCEEEEECSSSCCE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC--CCeEEEEECCCCCE
Confidence 122345777777554 3455542 2212222222222 3443333222211 23578888877653
No 306
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=49.26 E-value=2.2e+02 Score=28.62 Aligned_cols=169 Identities=15% Similarity=0.024 Sum_probs=92.4
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCc---EEECCCCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDE---WTSRPSLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~---W~~l~~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
++.||+.--.. ..++++++.... +.....+..+ .+.++ .++.||+.... ...++++++....
T Consensus 46 ~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~-----~~~I~~~~~dG~~ 112 (318)
T 3sov_A 46 HGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSE-----TNRIEVSNLDGSL 112 (318)
T ss_dssp GTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETT-----TTEEEEEETTSCS
T ss_pred CCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECC-----CCEEEEEECCCCc
Confidence 58899885432 468888887652 2222222211 12333 37889997432 3568899987643
Q ss_pred EEEc--ccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEE--CCEEEEEe
Q 005735 520 WIRT--RSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALG 593 (680)
Q Consensus 520 W~~i--~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~--~~~IyviG 593 (680)
-..+ ..+..| ..+++- ++.||+.--. ....|+++++....-+.+..-. -....++++- +++||+..
T Consensus 113 ~~~l~~~~~~~P---~giavdp~~g~ly~td~~----~~~~I~r~~~dG~~~~~~~~~~-l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 113 RKVLFWQELDQP---RAIALDPSSGFMYWTDWG----EVPKIERAGMDGSSRFIIINSE-IYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp CEEEECSSCSSE---EEEEEEGGGTEEEEEECS----SSCEEEEEETTSCSCEEEECSS-CSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCc---cEEEEeCCCCEEEEEecC----CCCEEEEEEcCCCCeEEEEECC-CCCccEEEEeccCCEEEEEE
Confidence 2322 222222 223333 5888887411 1247899988654333332111 1122345554 78899986
Q ss_pred ccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEECCEEEEEe
Q 005735 594 GFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIG 640 (680)
Q Consensus 594 G~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~~~lyV~G 640 (680)
.. ...|+.+|++...-+.+..- ......++++.++.+|+.-
T Consensus 185 ~~-----~~~I~~~d~dG~~~~~~~~~-~~~~P~glav~~~~lywtd 225 (318)
T 3sov_A 185 AK-----LNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTD 225 (318)
T ss_dssp TT-----TTEEEEEETTSCSCEEEECS-CCSCEEEEEEETTEEEEEE
T ss_pred CC-----CCEEEEEcCCCCceEEEecC-CCCCceEEEEeCCEEEEEe
Confidence 42 46799999875443333221 1223456677788888873
No 307
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=46.20 E-value=2.1e+02 Score=27.51 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=69.9
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCcE--EEC----CCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCC
Q 005735 444 LNGELYIFGGGDGNSWHNTVESYSPANDEW--TSR----PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 517 (680)
Q Consensus 444 ~~~~IyV~GG~~~~~~~~~v~vyD~~t~~W--~~l----~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t 517 (680)
.++++|+|=|. .+|+++.....+ ..+ +.+|. .--|+...++++|+|-| +.+++|+..+
T Consensus 27 ~~g~~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG-------~~yw~~~~~~ 90 (219)
T 1hxn_A 27 NHGATYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------TKVYVFLTKG 90 (219)
T ss_dssp TTSCEEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------TEEEEEECSS
T ss_pred CCCcEEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-------CEEEEEeCCC
Confidence 47899999873 356665432211 111 22332 22244445899999966 4577887653
Q ss_pred c-cE-----EEcc---ccccc--cc-ceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCC---CcEEEeccCCCCCcee
Q 005735 518 G-KW-----IRTR---SMLQK--RF-ALAAAEL--NGVLYATGGYDGNEYMNSAERFDPRE---HYWTKIANMNRRRGCH 580 (680)
Q Consensus 518 ~-~W-----~~i~---~~p~~--r~-~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t---~~W~~v~~~p~~r~~~ 580 (680)
+ +- ..+. .+|.. .. --++... ++++|+|-| +..|+||..+ ..|...+.+|.. .-
T Consensus 91 ~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g~p~~--vd 161 (219)
T 1hxn_A 91 GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPWPHEK--VD 161 (219)
T ss_dssp SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECCSCSC--CS
T ss_pred CceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCCCCCC--cC
Confidence 2 10 1111 12322 11 2222322 689999977 3678998654 234433333221 22
Q ss_pred EEEE------------ECCEEEEEeccCCCCCCCeEEEEeCC
Q 005735 581 SLAV------------LNGKLYALGGFDGSAMVPSIEVYDPR 610 (680)
Q Consensus 581 s~v~------------~~~~IyviGG~~~~~~~~~v~~yD~~ 610 (680)
++.. .++.+|.+-| +..|.||..
T Consensus 162 Aa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~ 196 (219)
T 1hxn_A 162 GALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHV 196 (219)
T ss_dssp EEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSH
T ss_pred EEEEccccccccceeccCCeEEEEEC-------CEEEEEeCC
Confidence 3333 2467888876 346777764
No 308
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=45.67 E-value=2e+02 Score=30.41 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=74.1
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEE--
Q 005735 446 GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWI-- 521 (680)
Q Consensus 446 ~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~-- 521 (680)
+.||+.-.. ..+.++|+.+++...+.. .-.......+ ++.||+...... .....+..++... .|.
T Consensus 153 g~Lyv~D~~------~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~~~-~~~~~ 221 (433)
T 4hw6_A 153 DDLYWVGQR------DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTRAS-GFTER 221 (433)
T ss_dssp CEEEEECBT------SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECGGG-TTCCE
T ss_pred CEEEEEeCC------CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCC-cccceEEEEECCC-Ceecc
Confidence 789987542 579999998888876643 1122223333 566998854221 1122355555432 222
Q ss_pred -EcccccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcE-EEeccCCCCCceeEEEEE--CCEEEEEecc
Q 005735 522 -RTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYW-TKIANMNRRRGCHSLAVL--NGKLYALGGF 595 (680)
Q Consensus 522 -~i~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W-~~v~~~p~~r~~~s~v~~--~~~IyviGG~ 595 (680)
.++.+ .....+++. ++.||+.-.. ...+++||+.++.. ..+...........++.. ++.||+..-.
T Consensus 222 ~~~~~~---~~P~giavd~~~G~lyv~d~~-----~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 222 LSLCNA---RGAKTCAVHPQNGKIYYTRYH-----HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp EEEEEC---SSBCCCEECTTTCCEEECBTT-----CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred cccccc---CCCCEEEEeCCCCeEEEEECC-----CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 22211 111223332 6788886422 24799999987665 333222211222234433 3468988532
Q ss_pred CCCCCCCeEEEEeCC
Q 005735 596 DGSAMVPSIEVYDPR 610 (680)
Q Consensus 596 ~~~~~~~~v~~yD~~ 610 (680)
.+.|++++..
T Consensus 294 -----~~~I~~~~~d 303 (433)
T 4hw6_A 294 -----KHCIYRVDYN 303 (433)
T ss_dssp -----TTEEEEEEBC
T ss_pred -----CCEEEEEeCC
Confidence 3568887654
No 309
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=45.57 E-value=2.8e+02 Score=28.79 Aligned_cols=185 Identities=14% Similarity=-0.000 Sum_probs=99.9
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCC----eEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCD----VIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPAND 471 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~----~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~ 471 (680)
++.||+.--. ...++++++... ....+... ......++++. ++.||+.-... ..++++++...
T Consensus 123 ~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavD~~~~~lY~~d~~~-----~~I~~~~~~g~ 191 (400)
T 3p5b_L 123 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVL-----GTVSVADTKGV 191 (400)
T ss_dssp TTEEEEEETT-----TTEEEEEEC------CCCEEEECS-SCSCEEEEEEETTTTEEEEEETTT-----TEEEEECTTTC
T ss_pred cCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeC-CCCCcccEEEEecCCceEEEECCC-----CeEEEEeCCCC
Confidence 6778876432 235777777642 11222110 11223345554 78999986543 46889998876
Q ss_pred cEEECC--CCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccc-eEEEEE--CCEEEE
Q 005735 472 EWTSRP--SLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFA-LAAAEL--NGVLYA 544 (680)
Q Consensus 472 ~W~~l~--~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~-~s~~~~--~g~Lyv 544 (680)
..+.+. .+..| .+.++ .++.||+..-. ....++++++....=..+.. ..... .++++- +++||+
T Consensus 192 ~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~----~~~~I~~~~~dG~~~~~~~~--~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 192 KRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp SEEEEEECSSCCE---EEEEEETTTTEEEEEECS----SSCCEEEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEE
T ss_pred ceEEEEeCCCCCc---ceEEEecccCeEEEEeCC----CCCEEEEEeCCCCccEEEEE--CCCCceEEEEEEeCCCEEEE
Confidence 554432 22222 12333 26789987421 12468888887543222211 11112 233333 689999
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCC-CCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p-~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
.-. ....|+++|.....-+.+...+ .-....++++.++.||+..-. ...|+.+|..+.
T Consensus 263 aD~-----~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~-----~~~V~~~~~~~G 321 (400)
T 3p5b_L 263 VDS-----KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTG 321 (400)
T ss_dssp EET-----TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESS-----SCSEEEEESSSC
T ss_pred EEC-----CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCC-----CCeEEEEEcCCC
Confidence 842 2357999998765444443221 122345677789999998632 356888885443
No 310
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=44.96 E-value=4e+02 Score=30.37 Aligned_cols=212 Identities=8% Similarity=-0.048 Sum_probs=104.7
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCcc------ceEE-EE-ECCEEEEEecCC-----CCCccc
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARS------YASA-AM-LNGELYIFGGGD-----GNSWHN 461 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~------~~s~-v~-~~~~IyV~GG~~-----~~~~~~ 461 (680)
+.+++..++++=..+.+--..+.+||..++++..-.--|.... -++. +- -++.+|+.-... ...+..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 5556666666654455556778999999998764221122211 1233 22 367777753211 122233
Q ss_pred eEEEEeCCCCc--EEECCCCCCCCcccEEEE-ECCE-----EEEEccCCCCcccceEEEEeCCC--ccEEEccccccccc
Q 005735 462 TVESYSPANDE--WTSRPSLNGTKGSLAGAT-IDNK-----IFAIGGGNGLECFSDVEMLDLDI--GKWIRTRSMLQKRF 531 (680)
Q Consensus 462 ~v~vyD~~t~~--W~~l~~lp~~r~~~a~~v-~~gk-----IyV~GG~~~~~~~~~ve~yD~~t--~~W~~i~~~p~~r~ 531 (680)
.++..-.-|.. =..+-.-+......++.+ .+++ +++..+.+ ...+.++..|... +.|..+ .+|. .
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~l-~~~~--~ 291 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKD--FYNYDNYILDTKYKNLKLQKI-NMPS--D 291 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESS--SSCEEEEEEECSSSSCEEEEC-CSCT--T
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecc--cCceeEEEEcCCCCCCcceEe-ecCC--c
Confidence 44443332210 000000011111222221 1222 33332211 2236677777653 667776 2232 2
Q ss_pred ceEEEEECCEEEEEcCCCCC-----CcCceeEEEeCCC--------CcEEEe-ccCCCCCceeEEEEECCEEEEEeccCC
Q 005735 532 ALAAAELNGVLYATGGYDGN-----EYMNSAERFDPRE--------HYWTKI-ANMNRRRGCHSLAVLNGKLYALGGFDG 597 (680)
Q Consensus 532 ~~s~~~~~g~Lyv~GG~~~~-----~~~~~v~~yD~~t--------~~W~~v-~~~p~~r~~~s~v~~~~~IyviGG~~~ 597 (680)
.......++.+|+....+.. .....+...|..+ ..|+.+ .+-+ .+....+...++.|++..-.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~ 370 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA-NEVFNFISTTKDRVFLATYDNV 370 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT-TEEEEEEEECSSCEEEEEEETT
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC-CCeEEEEEEECCEEEEEEEECC
Confidence 21235669999997654311 1345688888654 468874 3322 2233344455677776654332
Q ss_pred CCCCCeEEEEeCCCCcEE
Q 005735 598 SAMVPSIEVYDPRLGSWM 615 (680)
Q Consensus 598 ~~~~~~v~~yD~~t~~W~ 615 (680)
...+.++|+.++.|.
T Consensus 371 ---~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 371 ---VAKVVTFTLENEQWT 385 (711)
T ss_dssp ---EEEEEEECEETTEEC
T ss_pred ---EEEEEEEECCCCceE
Confidence 346888998888774
No 311
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.41 E-value=4.3e+02 Score=30.33 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=112.2
Q ss_pred CeEEEcCCCCCCccceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCC-----CCcccEEEEE---C
Q 005735 424 DVIKTLKPMSSARSYASAAML---NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNG-----TKGSLAGATI---D 492 (680)
Q Consensus 424 ~~W~~l~~mp~~R~~~s~v~~---~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~-----~r~~~a~~v~---~ 492 (680)
.+|+.+.+.... .-.++++. .+.+|+. +..+ .+++-+-.-.+|+.+...+. .+.-.+.++- .
T Consensus 4 ~~W~~~~~~~~g-~i~~i~~~p~~~~~~~a~-~~~g-----gv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~ 76 (789)
T 1sqj_A 4 YEFKNVAIGGGG-YITGIVAHPKTKDLLYAR-TDIG-----GAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP 76 (789)
T ss_dssp CEEEECCCCBCS-CEEEEEECSSSTTCEEEE-ESSS-----CEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE
T ss_pred ccceEccCCCCC-cEEEEEECCCCCCEEEEE-ecCC-----CEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCC
Confidence 579998773333 33333333 2456654 3221 36777777889999865321 1222333333 2
Q ss_pred CEEEEEccCCCCcccceEEEEeCCCccEEEccc-cc-----ccc-cceEEEEE---CCEEEEEcCCCCCCcCceeEEEeC
Q 005735 493 NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS-ML-----QKR-FALAAAEL---NGVLYATGGYDGNEYMNSAERFDP 562 (680)
Q Consensus 493 gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~-~p-----~~r-~~~s~~~~---~g~Lyv~GG~~~~~~~~~v~~yD~ 562 (680)
+.+|+..|.........++.=+-.-.+|+.+.. ++ ..+ ....+++. .+.+|+. ... ..+++-+-
T Consensus 77 ~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~-----~gl~~S~D 150 (789)
T 1sqj_A 77 DRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRT-----EGIWKSSD 150 (789)
T ss_dssp EEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSS-----SCEEEESS
T ss_pred CEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEE-ecc-----CCEEEECC
Confidence 468887653210111233333334468988742 11 112 12234444 3566663 311 23555544
Q ss_pred CCCcEEEeccCCC---CCceeEEEEE----CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCc-----------
Q 005735 563 REHYWTKIANMNR---RRGCHSLAVL----NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSR----------- 624 (680)
Q Consensus 563 ~t~~W~~v~~~p~---~r~~~s~v~~----~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R----------- 624 (680)
.-.+|+.+..++. .-.....+.+ .+.||+..... ..++.=.-.-.+|+.+..++...
T Consensus 151 gG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-----~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~ 225 (789)
T 1sqj_A 151 RAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-----QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDK 225 (789)
T ss_dssp TTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-----TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTC
T ss_pred CCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-----CeEEEEcCCCcCcccCCCCcCccccccccccCcc
Confidence 4578999976541 1122223333 24566654321 22333222346899987554321
Q ss_pred -----cceEEEEE--CCEEEEEecccCCC--cccceEEEEcCC-CCeEecccCCC
Q 005735 625 -----GYLGAAVV--KEAIYVIGGVKNGS--EIVDTVERFKEG-QGWEEINSRAI 669 (680)
Q Consensus 625 -----~~~s~v~~--~~~lyV~GG~~~~~--~~~~~ve~y~~~-~~W~~v~~~p~ 669 (680)
..+.+++. .+.||+..+..... .....++..+.+ .+|+.+...|.
T Consensus 226 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~ 280 (789)
T 1sqj_A 226 KPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVG 280 (789)
T ss_dssp CCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTT
T ss_pred cccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCC
Confidence 01444433 78888885321100 012335555544 89999877554
No 312
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=42.76 E-value=3.1e+02 Score=28.47 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=65.9
Q ss_pred hhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe--E-EEcCC--CCCC-ccceEEEEE--CCEEEEEec
Q 005735 382 MYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV--I-KTLKP--MSSA-RSYASAAML--NGELYIFGG 453 (680)
Q Consensus 382 ~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W-~~l~~--mp~~-R~~~s~v~~--~~~IyV~GG 453 (680)
++.+|...-+......++.+|+|-| +.+|+|+...-. + +.+.. +|.. ..--++... ++++|+|-|
T Consensus 220 wpgLP~~iDAa~~~~~~g~~~fFkg-------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG 292 (365)
T 3ba0_A 220 WPTLPSGIEAAYEIEARNQVFLFKD-------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD 292 (365)
T ss_dssp CSSCCSSCCEEEEEGGGTEEEEEET-------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET
T ss_pred ccCCCCCccEEEEecCCCEEEEEeC-------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC
Confidence 4444532222233335889999987 357787654211 1 22322 2321 122333334 589999987
Q ss_pred CCCCCccceEEEEeCCCCcEEECCC------CC-CCCcccEEEEE-CCEEEEEccCCCCcccceEEEEeCCCccEEE
Q 005735 454 GDGNSWHNTVESYSPANDEWTSRPS------LN-GTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 522 (680)
Q Consensus 454 ~~~~~~~~~v~vyD~~t~~W~~l~~------lp-~~r~~~a~~v~-~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~ 522 (680)
+..|+||..+++-..--+ .| .+..--++... ++++|.|-| +..+.||..+.+-..
T Consensus 293 -------~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 293 -------NQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp -------TEEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred -------CEEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 468999987764322111 11 11222344445 889999966 457889988776443
No 313
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=42.67 E-value=2.3e+02 Score=27.06 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=67.2
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEeCCCcc-E--EEc----ccccccccceEEEEE--CCEEEEEcCCCCCCcCcee
Q 005735 487 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK-W--IRT----RSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSA 557 (680)
Q Consensus 487 a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~-W--~~i----~~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v 557 (680)
|++..+|++|+|-|. ..+.++..... . ..+ +.+|.. .. ++... ++++|+|-| +..
T Consensus 35 Ai~~~~g~~~fFkg~-------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~-ID-AA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPEK-ID-AVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp EEEEETTEEEEEETT-------EEEEESSTTSCCEEEEEGGGTCTTSCSC-CS-EEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEECC-------EEEEEeCCCCccCCCEEHHHhcCCCCCC-cc-EEEEECCCCEEEEEeC-------CEE
Confidence 455679999999763 23444333211 1 111 233322 22 23333 689999976 467
Q ss_pred EEEeCCCC---cEEEecc--CCCC-CceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEE-----cC-C-CCC
Q 005735 558 ERFDPREH---YWTKIAN--MNRR-RGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-----GE-P-MKL 622 (680)
Q Consensus 558 ~~yD~~t~---~W~~v~~--~p~~-r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~-----v~-~-lp~ 622 (680)
|+||..+. -=+.|.. +|.. ...-++... ++++|++-| +..|.||..+++-.. +. . +..
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~g~ 171 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAI 171 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccCCC
Confidence 88884210 0011222 1211 112333332 689999977 458999987763221 11 0 111
Q ss_pred CccceEEEEEC--CEEEEEecc
Q 005735 623 SRGYLGAAVVK--EAIYVIGGV 642 (680)
Q Consensus 623 ~R~~~s~v~~~--~~lyV~GG~ 642 (680)
+..--++.... +.+|+|=|.
T Consensus 172 p~~idaAf~~~~~g~~YfFkg~ 193 (218)
T 1gen_A 172 PDNLDAVVDLQGGGHSYFFKGA 193 (218)
T ss_dssp CSSCSEEEECTTTCEEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECC
Confidence 22233444444 899999773
No 314
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=41.45 E-value=1.3e+02 Score=31.94 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CC-EEEEEcCCCCCCcCceeEEEeCCCCcEE
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NG-VLYATGGYDGNEYMNSAERFDPREHYWT 568 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 568 (680)
++.||+..-. ..+.++|+.+++...+.. ....+....+ ++ .||+....++ .....+..++.. +.|.
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~-~~~~~v~~~~~~-g~~~ 217 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNN-NDRPNNYILTRE-SGFK 217 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSC-TTSEEEEEEEGG-GTSC
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCC-cccceEEEEeCC-Ccee
Confidence 3679998431 678999999988776643 1122223333 34 5888864332 222345666653 3332
Q ss_pred ---EeccCCCCCceeEEEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcEEEc
Q 005735 569 ---KIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 617 (680)
Q Consensus 569 ---~v~~~p~~r~~~s~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v 617 (680)
.+..+.. .+.+++. ++.||+..-. ...|++||+.+..-..+
T Consensus 218 ~~~~l~~~~~---p~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 218 VITELTKGQN---CNGAETHPINGELYFNSWN-----AGQVFRYDFTTQETTPL 263 (430)
T ss_dssp SEEEEEECSS---CCCEEECTTTCCEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred eeeeeccCCC---ceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEE
Confidence 3333322 2344443 5788887532 35799999987765333
No 315
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=40.00 E-value=98 Score=30.01 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=57.1
Q ss_pred cCCCEEEEEecCCCCcccCeEEEEe--CCC--CeEE----Ec----CCCCC---CccceEEEEE--CCEEEEEecCCCCC
Q 005735 396 DPSESIYLVGGCDGDSWLSTLELYL--PSC--DVIK----TL----KPMSS---ARSYASAAML--NGELYIFGGGDGNS 458 (680)
Q Consensus 396 ~~~~~Iyv~GG~~~~~~~~~v~~yd--~~t--~~W~----~l----~~mp~---~R~~~s~v~~--~~~IyV~GG~~~~~ 458 (680)
..++.+|+|-| +.+|+|+ +.+ .... .+ +.+|. +...-++... ++++|+|-|
T Consensus 70 ~~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG----- 137 (227)
T 3lp9_A 70 TENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG----- 137 (227)
T ss_dssp CSTTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET-----
T ss_pred CCCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC-----
Confidence 56899999998 3588888 321 1111 11 12321 2122233333 689999988
Q ss_pred ccceEEEEeCCCCcEEECCC------CCCC------CcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCc
Q 005735 459 WHNTVESYSPANDEWTSRPS------LNGT------KGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIG 518 (680)
Q Consensus 459 ~~~~v~vyD~~t~~W~~l~~------lp~~------r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~ 518 (680)
+.+|+||..+++-..-.+ +|.. ..--++.. .++++|.|-| +..+.||..++
T Consensus 138 --~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 --DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD-------DHYARVKVTPX 202 (227)
T ss_dssp --TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------TEEEEEECCSS
T ss_pred --CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC-------CEEEEEECCcc
Confidence 468999987654321101 2211 12223333 2589999976 45678888776
No 316
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=39.49 E-value=5.1e+02 Score=30.10 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=89.0
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR 524 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~ 524 (680)
++.+++.|+.+ ..+.+||..+..-... ++....-.+++...+++++.|+.+ ..+.++|+.+++-...-
T Consensus 28 dg~~lAsgs~D-----g~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~D-----~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 28 TQNLLAIATVT-----GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINAK-----DTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp TTTEEEEEETT-----SEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEETT-----CEEEEEETTTCSEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEECc-----CeEEEEECCCCcEEEEE
Confidence 45666666655 2567777665443221 111111122333345555555433 45778898876532211
Q ss_pred cccccccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec--------cCC--CCCceeEEEEEC--CEEE
Q 005735 525 SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIA--------NMN--RRRGCHSLAVLN--GKLY 590 (680)
Q Consensus 525 ~~p~~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~--------~~p--~~r~~~s~v~~~--~~Iy 590 (680)
..+ ....++.+ ++..+++|+.++ .+.+||..+..-.... ..+ ......+++..- +.++
T Consensus 96 ~~~---~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 96 FVP---GKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp ECS---SCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred cCC---CCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 111 11122222 556666676554 6788998887643211 001 111122333332 3566
Q ss_pred EEeccCCCCCCCeEEEEeCCCCcEEEcCCCC------C---------C-ccceEEEEE--CCEEEEEecccCCCcccceE
Q 005735 591 ALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK------L---------S-RGYLGAAVV--KEAIYVIGGVKNGSEIVDTV 652 (680)
Q Consensus 591 viGG~~~~~~~~~v~~yD~~t~~W~~v~~lp------~---------~-R~~~s~v~~--~~~lyV~GG~~~~~~~~~~v 652 (680)
+.|+.+ ..+ +||+++..-...-... . . ......+.+ ++..++.|+.++ .+
T Consensus 168 ~~g~~d-----g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg------~i 235 (902)
T 2oaj_A 168 LISYEY-----VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN------SL 235 (902)
T ss_dssp EEECSS-----CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC------CE
T ss_pred EEEeCC-----CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC------eE
Confidence 666543 357 9999887544321110 0 0 111223333 677888887664 36
Q ss_pred EEEcCC
Q 005735 653 ERFKEG 658 (680)
Q Consensus 653 e~y~~~ 658 (680)
.+|+..
T Consensus 236 ~lWd~~ 241 (902)
T 2oaj_A 236 VFWDAN 241 (902)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 777765
No 317
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=38.93 E-value=36 Score=31.75 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=33.1
Q ss_pred cchhccCCCCcEEEEecC--CCeEeeEEEeccCCCccccCCCCC
Q 005735 47 LYVRKVDPGLPLFLFNYT--DRKLHGIFEAASPGMMNINPYGWT 88 (680)
Q Consensus 47 ~~v~~i~~g~~lfl~~~~--~~~l~g~~~a~s~g~~~~~~~a~~ 88 (680)
-|.+.+++|..+|.|--. .+.+.||.|-++.+- .+|.+|.
T Consensus 54 N~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~y--pD~t~fd 95 (172)
T 2ar1_A 54 NNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAY--DDFTALD 95 (172)
T ss_dssp HHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGC
T ss_pred HHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeecc--CCccccc
Confidence 557889999999999777 799999999988543 5777775
No 318
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=37.28 E-value=3.2e+02 Score=27.16 Aligned_cols=85 Identities=8% Similarity=-0.001 Sum_probs=48.6
Q ss_pred cceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEE-EcC--CC--CCCccceEEEEE--CCEEEEEecCCCCCccce
Q 005735 390 SDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIK-TLK--PM--SSARSYASAAML--NGELYIFGGGDGNSWHNT 462 (680)
Q Consensus 390 ~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~-~l~--~m--p~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~ 462 (680)
.....+..++.||+..-.........+.+||+.+++.. .+. .. ........+++. ++.+|+..... .....
T Consensus 69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--~~~~~ 146 (343)
T 2qe8_A 69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--DDKAA 146 (343)
T ss_dssp EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--GGGCE
T ss_pred eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--CCCCe
Confidence 34566777889999752110001256999999988743 332 11 111223455555 57899874311 02357
Q ss_pred EEEEeCCCCc-EEEC
Q 005735 463 VESYSPANDE-WTSR 476 (680)
Q Consensus 463 v~vyD~~t~~-W~~l 476 (680)
+.+||+.+++ |+.+
T Consensus 147 i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 147 LIRVDLQTGLAARVL 161 (343)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred EEEEECCCCCEEEEe
Confidence 8999998654 5544
No 319
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=35.87 E-value=5.3e+02 Score=29.20 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=118.2
Q ss_pred CCeEEEcCCCCCCccceEEEEE--C-CEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCC----cccEEEEE----
Q 005735 423 CDVIKTLKPMSSARSYASAAML--N-GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK----GSLAGATI---- 491 (680)
Q Consensus 423 t~~W~~l~~mp~~R~~~s~v~~--~-~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r----~~~a~~v~---- 491 (680)
..+|+.+.+-...-.-.++++. + +.||+.... ..+++.+-...+|+.+.+.+... ....+..+
T Consensus 10 ~~~w~~~~~~~~~g~i~~i~~~p~~~~~~~~~~~~------ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~ 83 (737)
T 2cn3_A 10 PYKWDNVVIGGGGGFMPGIVFNETEKDLIYARAAI------GGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVD 83 (737)
T ss_dssp CEEEEEECCCSBCSCCCEEEECSSSTTCEEEECSS------SCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSS
T ss_pred CCeeEEcccCCCcceeeEEEECCCCCCEEEEEecC------CcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCC
Confidence 3579988764433133344443 2 567774322 24888888899999986633211 12233333
Q ss_pred CCEEEEEccCCCCcc---cceEEEEeCCCccEEEccc-cc-----ccc-cceEEEEE---CCEEEEEcCCCCCCcCceeE
Q 005735 492 DNKIFAIGGGNGLEC---FSDVEMLDLDIGKWIRTRS-ML-----QKR-FALAAAEL---NGVLYATGGYDGNEYMNSAE 558 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~---~~~ve~yD~~t~~W~~i~~-~p-----~~r-~~~s~~~~---~g~Lyv~GG~~~~~~~~~v~ 558 (680)
.+.||+..|...... ...++.=.=.-.+|+.+.. .+ ..+ ..+.+++. .+.||+.... + ..++
T Consensus 84 ~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~-g----~gl~ 158 (737)
T 2cn3_A 84 PNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC-G----NGLW 158 (737)
T ss_dssp TTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST-T----CCEE
T ss_pred CCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc-C----CcEE
Confidence 257888765311111 1123222223457988742 11 111 12334332 2567764311 1 2355
Q ss_pred EEeCCCCcEEEeccCCCCC--------------ceeEEEEEC----------CEEEEEeccCCCCCCCeEEEEeCCCCcE
Q 005735 559 RFDPREHYWTKIANMNRRR--------------GCHSLAVLN----------GKLYALGGFDGSAMVPSIEVYDPRLGSW 614 (680)
Q Consensus 559 ~yD~~t~~W~~v~~~p~~r--------------~~~s~v~~~----------~~IyviGG~~~~~~~~~v~~yD~~t~~W 614 (680)
+-+-.-.+|+.+..+|... .....+.++ +.||+.-+ ++. ..++.=.-.-.+|
T Consensus 159 ~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~-~~~---~~v~~S~DgG~tW 234 (737)
T 2cn3_A 159 RSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVA-DKN---ESIYRSTDGGVTW 234 (737)
T ss_dssp EESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEES-CSS---CCEEEESSTTSCC
T ss_pred EeCCCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEec-CCC---ccEEEEcCCCCce
Confidence 4444456899987665321 112223332 25665422 111 1233322235689
Q ss_pred EEcCCCCCCccceEEEEE-CCEEEEEecccCC---CcccceEEEEcCC-CCeEecccCCC
Q 005735 615 MSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNG---SEIVDTVERFKEG-QGWEEINSRAI 669 (680)
Q Consensus 615 ~~v~~lp~~R~~~s~v~~-~~~lyV~GG~~~~---~~~~~~ve~y~~~-~~W~~v~~~p~ 669 (680)
+.+..+|.....+.++.. ++.+|+..+.... +.....++.++.+ .+|+.+.+.|.
T Consensus 235 ~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~ 294 (737)
T 2cn3_A 235 KAVPGQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY 294 (737)
T ss_dssp EECTTCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCT
T ss_pred EECCCCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCC
Confidence 999877765444444433 6788887643211 1123457777666 99999887665
No 320
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=35.73 E-value=2.6e+02 Score=27.58 Aligned_cols=215 Identities=18% Similarity=0.120 Sum_probs=91.8
Q ss_pred ccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEECCEEEEEecCCCCCccceEEEE
Q 005735 387 LESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 387 ~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~~~~IyV~GG~~~~~~~~~v~vy 466 (680)
.-..+...+. ++.||.+|--.... +.. |.. ....+..+ ..-..|+++.-++.||..|-......-.
T Consensus 31 ~G~~h~~~l~-~G~v~~wG~n~~Gq-lg~-----p~~-~~~~i~~i-a~G~~hs~~l~~G~v~~wG~n~~Gqlg~----- 96 (282)
T 3qhy_B 31 GGYFHGLALK-GGKVLGWGANLNGQ-LTM-----PAA-TQSGVDAI-AAGNYHSLALKDGEVIAWGGNEDGQTTV----- 96 (282)
T ss_dssp ECSSEEEEEE-TTEEEEEECCSSST-TSC-----CGG-GGSCCCEE-EECSSEEEEEETTEEEEEECCTTSTTCC-----
T ss_pred eCCCeEEEEE-CCEEEEEeCCCCCC-CCC-----Ccc-CCCCEEEE-EeCCCEEEEEECCEEEEeeCCCCCCCCC-----
Confidence 3344556666 99999999532111 110 000 00000001 1124566666699999999644211100
Q ss_pred eCC--CCcEEECCCCCCCCcccEEEEECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEECCEEEE
Q 005735 467 SPA--NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYA 544 (680)
Q Consensus 467 D~~--t~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv 544 (680)
|. ......+. .-..|+++.-++++|.+|-....+.-... ........+ - .-..|+++..++.+|.
T Consensus 97 -P~~~~~~v~~ia----~G~~hs~al~~G~v~~wG~n~~gqlg~~~----~~~~~i~~i---~-~G~~~~~~l~~G~v~~ 163 (282)
T 3qhy_B 97 -PAEARSGVDAIA----AGAWASYALKDGKVIAWGDDSDGQTTVPA----EAQSGVTAL---D-GGVYTALAVKNGGVIA 163 (282)
T ss_dssp -CGGGSSSEEEEE----EETTEEEEEETTEEEEEECCTTSTTSCCG----GGGSSEEEE---E-ECSSEEEEEETTEEEE
T ss_pred -CcccCCCeEEEE----CcCCEEEEEeCCeEEEecCCCCCcCCCCc----cCCCCeEEE---E-cccCEEEEEECCEEEE
Confidence 00 00111110 01234443339999999864322210000 000011111 1 1224555556999999
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCc
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSR 624 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R 624 (680)
.|-.......... ........+. ....|+++.-++++|..|-...... . ........+......
T Consensus 164 wG~n~~gqlg~p~----~~~~~v~~i~----~G~~hs~al~~G~v~~wG~n~~gql-g------~p~~~~~~v~~i~~G- 227 (282)
T 3qhy_B 164 WGDNYFGQTTVPA----EAQSGVDDVA----GGIFHSLALKDGKVIAWGDNRYKQT-T------VPTEALSGVSAIASG- 227 (282)
T ss_dssp EECCTTSTTSCCG----GGGSSEEEEE----ECSSEEEEEETTEEEEEECCTTSTT-C------CCGGGGSSCCEEEEC-
T ss_pred ecCCCCCCCCCce----ecCCCeEEEE----ecCCEEEEEECCeEEEEECCCCCCC-C------CCcccCCCceEEEcC-
Confidence 9864322111000 0011233332 1234555557899999985322211 1 000001111111222
Q ss_pred cceEEEEECCEEEEEecccC
Q 005735 625 GYLGAAVVKEAIYVIGGVKN 644 (680)
Q Consensus 625 ~~~s~v~~~~~lyV~GG~~~ 644 (680)
..|++++.+++||..|-...
T Consensus 228 ~~h~~al~~g~v~~wG~n~~ 247 (282)
T 3qhy_B 228 EWYSLALKNGKVIAWGSSRT 247 (282)
T ss_dssp SSCEEEEETTEEEEESTTCC
T ss_pred CCEEEEEECCEEEEecCCCC
Confidence 23444444999999985443
No 321
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=33.82 E-value=5.8e+02 Score=29.05 Aligned_cols=196 Identities=12% Similarity=0.089 Sum_probs=102.3
Q ss_pred EEEEeCCCCeEEEcCC-C-----C----CCccceEEEEE---CCEEEEEecCC-CCCccceEEEEeCCCCcEEECCC-CC
Q 005735 416 LELYLPSCDVIKTLKP-M-----S----SARSYASAAML---NGELYIFGGGD-GNSWHNTVESYSPANDEWTSRPS-LN 480 (680)
Q Consensus 416 v~~yd~~t~~W~~l~~-m-----p----~~R~~~s~v~~---~~~IyV~GG~~-~~~~~~~v~vyD~~t~~W~~l~~-lp 480 (680)
+++-+-.-.+|+.+.. + + .....+++++. .+.+|+..|.. .......+++-+-.-.+|+++.. .+
T Consensus 45 v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~ 124 (763)
T 3a0f_A 45 TYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVP 124 (763)
T ss_dssp EEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSC
T ss_pred EEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcc
Confidence 7777777789999865 3 2 11223333332 36888866531 11112345554445678988752 11
Q ss_pred C-----CCcc-cEEEEE---CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccc---cceEEEEE----CCEEEE
Q 005735 481 G-----TKGS-LAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR---FALAAAEL----NGVLYA 544 (680)
Q Consensus 481 ~-----~r~~-~a~~v~---~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r---~~~s~~~~----~g~Lyv 544 (680)
. .|.. ...++. .+.+|+.+. . ..++.=+=.-.+|+.+..++... .....+.+ .+.+|+
T Consensus 125 ~~~~~~g~~~~~~l~v~p~~~~~v~a~~~-~-----~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~ 198 (763)
T 3a0f_A 125 MGANDMGRNGGERLAVNPHWTDELWFGSR-T-----QGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYV 198 (763)
T ss_dssp CCTTSTTTTSBCCEEECTTSTTCEEEECS-S-----SCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEE
T ss_pred cCccccCccccceEEECCCCCCEEEEEeC-C-----CcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEE
Confidence 1 1211 234443 356887642 1 12332222345899987665432 22333333 246777
Q ss_pred EcCCCCCCcCceeEEEeCCCCcEEEeccCCC--------------------CCceeEEEEE-CCEEEEEeccCC---CCC
Q 005735 545 TGGYDGNEYMNSAERFDPREHYWTKIANMNR--------------------RRGCHSLAVL-NGKLYALGGFDG---SAM 600 (680)
Q Consensus 545 ~GG~~~~~~~~~v~~yD~~t~~W~~v~~~p~--------------------~r~~~s~v~~-~~~IyviGG~~~---~~~ 600 (680)
.....+ .+++-+-.-.+|+.+...+. ....+.++.. ++.+|+...... ...
T Consensus 199 ~~~~~g-----~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 273 (763)
T 3a0f_A 199 ASHAVG-----GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVL 273 (763)
T ss_dssp EESSTT-----CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCC
T ss_pred EEeCCC-----eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCc
Confidence 643211 34444444568999875552 2233333332 577888743110 012
Q ss_pred CCeEEEEeCCCCcEEEcCCCCC
Q 005735 601 VPSIEVYDPRLGSWMSGEPMKL 622 (680)
Q Consensus 601 ~~~v~~yD~~t~~W~~v~~lp~ 622 (680)
...++..+-...+|+.+.+.+.
T Consensus 274 ~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 274 YGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp CEEEEEEETTTTEEEECCTTSS
T ss_pred ceeEEEEeCCCCceEECCCCCC
Confidence 3468888888999999876543
No 322
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=32.35 E-value=3.4e+02 Score=25.89 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=57.0
Q ss_pred EcCCCEEEEEecCCCCcccCeEEEEeCCCCe---EEEcCC--CCCC-ccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 395 LDPSESIYLVGGCDGDSWLSTLELYLPSCDV---IKTLKP--MSSA-RSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 395 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~---W~~l~~--mp~~-R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
...++++|+|-| +..|+|+..+-. =+.+.. +|.. ..--++... ++++|+|-| +..|+|
T Consensus 84 ~~~~~k~yfFkG-------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~ 149 (218)
T 1gen_A 84 APQEEKAVFFAG-------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRY 149 (218)
T ss_dssp ETTTTEEEEEET-------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEE
T ss_pred ECCCCEEEEEeC-------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEE
Confidence 334789999988 468999853100 011211 1211 122334433 689999988 468999
Q ss_pred eCCCCcEEECCC-------CCCCCcccEEEEEC--CEEEEEccCCCCcccceEEEEeCCCcc
Q 005735 467 SPANDEWTSRPS-------LNGTKGSLAGATID--NKIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 467 D~~t~~W~~l~~-------lp~~r~~~a~~v~~--gkIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
|..+++-...-+ +..+..-.++...+ +++|.+-| +..+.||..+.+
T Consensus 150 d~~~~~v~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 150 NEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp ETTTTEECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred ECccccccCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 987764321100 01122223444444 89999966 346677766544
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=31.31 E-value=7.7e+02 Score=29.76 Aligned_cols=115 Identities=11% Similarity=0.029 Sum_probs=70.3
Q ss_pred cceEEEEeCCCccEEEcccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEec--cCCCCCceeEEEE
Q 005735 507 FSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIA--NMNRRRGCHSLAV 584 (680)
Q Consensus 507 ~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~--~~p~~r~~~s~v~ 584 (680)
...+.+|+....+.+.+...+..-...+++.++|+|++.-| +.+.+|+...++.-... ..+. .....+..
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig-------~~l~vy~l~~~~~L~~~~~~~~~-i~~~~l~~ 934 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASIN-------STVRLYEWTTEKELRTECNHYNN-IMALYLKT 934 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEET-------TEEEEEEECTTSCEEEEEEECCC-SCEEEEEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcC-------CEEEEEECCCCceEEEEeecccc-EEEEEEec
Confidence 44688888877777766554444456677888998776544 46788887765432211 1111 01112334
Q ss_pred ECCEEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEEEC
Q 005735 585 LNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVK 633 (680)
Q Consensus 585 ~~~~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~~~ 633 (680)
.++.|++-.-.. .-.+..|+...++-..++.-..+|...++..++
T Consensus 935 ~~~~I~vgD~~~----Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 935 KGDFILVGDLMR----SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD 979 (1158)
T ss_dssp ETTEEEEEESSB----CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE
T ss_pred cCCEEEEEEhhh----eEEEEEEEcCCCeEEEEEeecccccEEEEEEEc
Confidence 577766543221 123567899888898888888888877777663
No 324
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=30.95 E-value=5.7e+02 Score=28.51 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=81.9
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECCCCCCCCcccEEEEE----CCEEEEEccC------------CCCcccc
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI----DNKIFAIGGG------------NGLECFS 508 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~~lp~~r~~~a~~v~----~gkIyV~GG~------------~~~~~~~ 508 (680)
+..+||.-.. ...+.+.|+.+.+-..+-.+|....-|..+.. .+.+|+.+.. ......+
T Consensus 101 G~~lfVnd~~-----~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 101 GRFLFMNDKA-----NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEETT-----TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCEEEEEcCC-----CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 4578885432 25699999999875543355655556666652 4568777532 1123455
Q ss_pred eEEEEeCCCcc--EEEc-cccc-------ccccceEEEEEC--------------CEEEEEcCC-------CC-CCcCce
Q 005735 509 DVEMLDLDIGK--WIRT-RSML-------QKRFALAAAELN--------------GVLYATGGY-------DG-NEYMNS 556 (680)
Q Consensus 509 ~ve~yD~~t~~--W~~i-~~~p-------~~r~~~s~~~~~--------------g~Lyv~GG~-------~~-~~~~~~ 556 (680)
.+-+.|.++.+ |+.. +.-| ..+.....+.-. +.+.++--- ++ ..+.+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 78889999864 5432 1111 111111111111 112221100 00 122356
Q ss_pred eEEEeCCCCcEEE-eccCCCCCceeEEEEE-CC-EEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 557 AERFDPREHYWTK-IANMNRRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 557 v~~yD~~t~~W~~-v~~~p~~r~~~s~v~~-~~-~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
+-+.|..+.+... +...|.+..-|++... +| .+|+.+.. .+.+.+||..+.
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-----s~~VsVid~~~~ 309 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-----SPTVTVLDVTRF 309 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT-----SSBEEEEEGGGH
T ss_pred EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC-----CCeEEEEECccc
Confidence 7888888733222 2333444445566554 44 46666543 467899999864
No 325
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=29.13 E-value=3.6e+02 Score=25.19 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=63.1
Q ss_pred hhhhcccccceEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCe---EEEcCC----CCCCccceEEEEE--CCEEEEEe
Q 005735 382 MYEKLLESSDELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDV---IKTLKP----MSSARSYASAAML--NGELYIFG 452 (680)
Q Consensus 382 ~~~~p~~~~~~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~---W~~l~~----mp~~R~~~s~v~~--~~~IyV~G 452 (680)
++.+|. ...++....++++|+|-| +..|+|+..+.. =+.+.. +|.....+ +... ++++|+|-
T Consensus 46 w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDA-A~~~~~~g~~yfFk 116 (196)
T 3c7x_A 46 WRGLPA-SINTAYERKDGKFVFFKG-------DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDA-ALFWMPNGKTYFFR 116 (196)
T ss_dssp STTCCS-SCCEEEECTTSCEEEEET-------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSE-EEEETTTTEEEEEE
T ss_pred ccCCCC-CccEEEEeCCCcEEEecC-------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccE-EEEEccCCEEEEEE
Confidence 344443 344444346788999887 458888854211 012222 33222333 3333 68999998
Q ss_pred cCCCCCccceEEEEeCCCCcEEE-----CCCCC-CCCcccEEEEE-CC-EEEEEccCCCCcccceEEEEeCCCcc
Q 005735 453 GGDGNSWHNTVESYSPANDEWTS-----RPSLN-GTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIGK 519 (680)
Q Consensus 453 G~~~~~~~~~v~vyD~~t~~W~~-----l~~lp-~~r~~~a~~v~-~g-kIyV~GG~~~~~~~~~ve~yD~~t~~ 519 (680)
| +..|+||..+++-.. +...+ .+..-.++... ++ ++|.+-| +..+.||..+.+
T Consensus 117 G-------~~yw~yd~~~~~v~~gyPk~i~~~~gip~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 117 G-------NKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp T-------TEEEEEETTTTEECTTCSEEGGGSBTCCSSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred C-------CEEEEEeCCcccccCCCCccHHHCCCcCCCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 7 458999987764321 11111 11222333333 44 8999966 456788887765
No 326
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=28.29 E-value=4.5e+02 Score=26.09 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccc--cccceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCC
Q 005735 492 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ--KRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREH 565 (680)
Q Consensus 492 ~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~--~r~~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~ 565 (680)
++++++.|+.++. -+.+||..+++-.. .+.. .......+.+ ++++++.|+.++ .+.+||..+.
T Consensus 206 ~g~~l~s~s~d~~----~v~iwd~~~~~~~~--~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~iw~~~~~ 272 (355)
T 3vu4_A 206 KSDMVATCSQDGT----IIRVFKTEDGVLVR--EFRRGLDRADVVDMKWSTDGSKLAVVSDKW-----TLHVFEIFND 272 (355)
T ss_dssp TSSEEEEEETTCS----EEEEEETTTCCEEE--EEECTTCCSCEEEEEECTTSCEEEEEETTC-----EEEEEESSCC
T ss_pred CCCEEEEEeCCCC----EEEEEECCCCcEEE--EEEcCCCCCcEEEEEECCCCCEEEEEECCC-----EEEEEEccCC
Confidence 6777777775532 16788988765322 1110 0111122222 577777777653 6778887653
No 327
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=28.03 E-value=4.6e+02 Score=26.11 Aligned_cols=184 Identities=13% Similarity=0.001 Sum_probs=98.7
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCe---EEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCc
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDV---IKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDE 472 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~---W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~ 472 (680)
++.||..--. ...++++++.... +.....+ ....++++. ++.||+.-... ..++++++....
T Consensus 46 ~~~lyw~D~~-----~~~I~r~~~~g~~~~~~~~~~~l---~~p~glavd~~~g~ly~~d~~~-----~~I~~~~~dG~~ 112 (318)
T 3sov_A 46 HGLIYWSDVS-----EEAIKRTEFNKTESVQNVVVSGL---LSPDGLACDWLGEKLYWTDSET-----NRIEVSNLDGSL 112 (318)
T ss_dssp GTEEEEEETT-----TTEEEEEETTSSSCCCEEEEECC---SCCCEEEEETTTTEEEEEETTT-----TEEEEEETTSCS
T ss_pred CCEEEEEECC-----CCcEEEEEccCCCceEEEEcCCC---CCccEEEEEcCCCeEEEEECCC-----CEEEEEECCCCc
Confidence 4667766432 2457777776542 2111111 122345553 78999875432 468889887543
Q ss_pred EEEC--CCCCCCCcccEEEE--ECCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE--CCEEEEEc
Q 005735 473 WTSR--PSLNGTKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATG 546 (680)
Q Consensus 473 W~~l--~~lp~~r~~~a~~v--~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~--~g~Lyv~G 546 (680)
-+.+ ..+..| .+.++ .++.||+..-. ....++++++....-..+..- .-.....++.- +++||+.-
T Consensus 113 ~~~l~~~~~~~P---~giavdp~~g~ly~td~~----~~~~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 113 RKVLFWQELDQP---RAIALDPSSGFMYWTDWG----EVPKIERAGMDGSSRFIIINS-EIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp CEEEECSSCSSE---EEEEEEGGGTEEEEEECS----SSCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCc---cEEEEeCCCCEEEEEecC----CCCEEEEEEcCCCCeEEEEEC-CCCCccEEEEeccCCEEEEEE
Confidence 3332 222222 12233 25789987421 235688998875432222110 01112233443 68999974
Q ss_pred CCCCCCcCceeEEEeCCCCcEEEeccCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeCCCCc
Q 005735 547 GYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 613 (680)
Q Consensus 547 G~~~~~~~~~v~~yD~~t~~W~~v~~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~~t~~ 613 (680)
. ....|+++|.....-+.+... ....-.++++.++.||+..- ....|..+|+.+..
T Consensus 185 ~-----~~~~I~~~d~dG~~~~~~~~~-~~~~P~glav~~~~lywtd~-----~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 185 A-----KLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDW-----STHSILACNKYTGE 240 (318)
T ss_dssp T-----TTTEEEEEETTSCSCEEEECS-CCSCEEEEEEETTEEEEEET-----TTTEEEEEETTTCC
T ss_pred C-----CCCEEEEEcCCCCceEEEecC-CCCCceEEEEeCCEEEEEec-----CCCeEEEEECCCCC
Confidence 2 235789999875443433321 12233566777889998843 23578999986543
No 328
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=25.47 E-value=7.4e+02 Score=27.60 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=39.9
Q ss_pred EEEcCCCEEEEEecCC----CCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEE
Q 005735 393 LHLDPSESIYLVGGCD----GDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 393 ~~v~~~~~Iyv~GG~~----~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vy 466 (680)
..+.++++.++++... ......++++||..+++...+...+. ....+.+ +|+.++++.. .++++.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~---~~~~~~~SPdG~~la~~~~------~~i~~~ 137 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN---NTQWVTWSPVGHKLAYVWN------NDIYVK 137 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT---TEEEEEECSSTTCEEEEET------TEEEEE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCC---cceeeEECCCCCEEEEEEC------CeEEEE
Confidence 4556677666666532 12334678999999998776654322 1112222 4443344321 356666
Q ss_pred eCCCCcEEEC
Q 005735 467 SPANDEWTSR 476 (680)
Q Consensus 467 D~~t~~W~~l 476 (680)
|..++.-.++
T Consensus 138 ~~~~~~~~~l 147 (740)
T 4a5s_A 138 IEPNLPSYRI 147 (740)
T ss_dssp SSTTSCCEEC
T ss_pred ECCCCceEEE
Confidence 6665543333
No 329
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=24.87 E-value=6e+02 Score=28.86 Aligned_cols=149 Identities=6% Similarity=-0.071 Sum_probs=80.3
Q ss_pred cceEEEEeCCC--CcEEECCCCCCCCcccEEEEECCEEEEEccCCC----C-cccceEEEEeCCC--------ccEEE-c
Q 005735 460 HNTVESYSPAN--DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNG----L-ECFSDVEMLDLDI--------GKWIR-T 523 (680)
Q Consensus 460 ~~~v~vyD~~t--~~W~~l~~lp~~r~~~a~~v~~gkIyV~GG~~~----~-~~~~~ve~yD~~t--------~~W~~-i 523 (680)
.+.++..|... ..|.++ .+| +...-....++++|+....+- . .....+...|+.+ ..|+. +
T Consensus 268 ~~~~~~~~~~~~~~~~~~l-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKI-NMP--SDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp CEEEEEEECSSSSCEEEEC-CSC--TTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred ceeEEEEcCCCCCCcceEe-ecC--CcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 46777777653 678777 333 222223566999999765431 1 1345688888765 36876 3
Q ss_pred ccccccccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCcEEEe--ccCCCCCceeEEEEE---CCEEEEEeccCCC
Q 005735 524 RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI--ANMNRRRGCHSLAVL---NGKLYALGGFDGS 598 (680)
Q Consensus 524 ~~~p~~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v--~~~p~~r~~~s~v~~---~~~IyviGG~~~~ 598 (680)
.+-. .+.--.....++.||+..-.++ ...+.++|+.++.|... -.+|.. ........ ++.+++.... .
T Consensus 345 ~~~~-~~~l~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss--~ 417 (711)
T 4hvt_A 345 TPTA-NEVFNFISTTKDRVFLATYDNV---VAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIEN--S 417 (711)
T ss_dssp CCCT-TEEEEEEEECSSCEEEEEEETT---EEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEEC--S
T ss_pred CCCC-CCeEEEEEEECCEEEEEEEECC---EEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEec--C
Confidence 3322 2222234445677776543322 34688899888877432 234422 12222221 2334433221 1
Q ss_pred CCCCeEEEEeCCCCcEEEcCC
Q 005735 599 AMVPSIEVYDPRLGSWMSGEP 619 (680)
Q Consensus 599 ~~~~~v~~yD~~t~~W~~v~~ 619 (680)
..-..++.||+. +.++.+..
T Consensus 418 ~~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 418 IVPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp SSCCEEEEECTT-SCEEEEEC
T ss_pred CCCCEEEEEeCC-CcEEEEec
Confidence 234678999987 77776643
No 330
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=23.71 E-value=53 Score=30.18 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=33.4
Q ss_pred cchhccCCCCcEEEEecC--CCeEeeEEEeccCCCccccCCCCC
Q 005735 47 LYVRKVDPGLPLFLFNYT--DRKLHGIFEAASPGMMNINPYGWT 88 (680)
Q Consensus 47 ~~v~~i~~g~~lfl~~~~--~~~l~g~~~a~s~g~~~~~~~a~~ 88 (680)
-|.+.+|+|...|.|--. .+.+.||.|-++.+- .||.+|.
T Consensus 36 N~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~y--pD~t~fd 77 (157)
T 2eve_A 36 NFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAY--PDPTALD 77 (157)
T ss_dssp HHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGC
T ss_pred HHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccC--CCccccc
Confidence 567889999999999766 799999999988543 6788876
No 331
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=23.44 E-value=7.9e+02 Score=27.23 Aligned_cols=178 Identities=15% Similarity=0.049 Sum_probs=99.4
Q ss_pred CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCcEEE
Q 005735 398 SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTS 475 (680)
Q Consensus 398 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~--~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~ 475 (680)
++.||+.-.. ...++++++.......+..... ....++++. ++.||+.-... ..++++++....-+.
T Consensus 48 ~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD~~~~~LY~tD~~~-----~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 48 DNRIYWTDIS-----LKTISRAFMNGSALEHVVEFGL-DYPEGMAVDWLGKNLYWADTGT-----NRIEVSKLDGQHRQV 116 (628)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEEEEETTT-----TEEEEEETTSTTCEE
T ss_pred CCEEEEEECC-----CCeEEEEECCCCCcEEEEeCCC-CCcceEEEEeCCCEEEEEECCC-----CEEEEEecCCCcEEE
Confidence 6778876542 2457788877654444322111 223455553 78999975432 578999887543332
Q ss_pred C--CCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccEEEcccccccccceEEEEE---CCEEEEEcCC
Q 005735 476 R--PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL---NGVLYATGGY 548 (680)
Q Consensus 476 l--~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W~~i~~~p~~r~~~s~~~~---~g~Lyv~GG~ 548 (680)
+ ..+..| .+.++- +|.||+..-. ....|++++++...-..+.. ....+....+ +++||+.-.
T Consensus 117 l~~~~l~~P---~~iavdp~~G~lY~tD~g----~~~~I~r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~LY~aD~- 185 (628)
T 4a0p_A 117 LVWKDLDSP---RALALDPAEGFMYWTEWG----GKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWTDL- 185 (628)
T ss_dssp EECSSCCCE---EEEEEETTTTEEEEEECS----SSCEEEEEETTSCSCEEEEC---SCSSEEEEEEETTTTEEEEEET-
T ss_pred EEeCCCCCc---ccEEEccCCCeEEEeCCC----CCCEEEEEeCCCCceEEEEC---CCCCcceEEEccccCEEEEEEC-
Confidence 2 223222 133333 6889997411 13578889887665444322 1222333333 589999843
Q ss_pred CCCCcCceeEEEeCCCCcEEEec-cCCCCCceeEEEEECCEEEEEeccCCCCCCCeEEEEeC
Q 005735 549 DGNEYMNSAERFDPREHYWTKIA-NMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDP 609 (680)
Q Consensus 549 ~~~~~~~~v~~yD~~t~~W~~v~-~~p~~r~~~s~v~~~~~IyviGG~~~~~~~~~v~~yD~ 609 (680)
..+.|+++|+....=+.+. .++ ...++++.++.||+..-. ...|+.+|.
T Consensus 186 ----~~~~I~~~d~dG~~~~v~~~~l~---~P~glav~~~~ly~tD~~-----~~~I~~~dk 235 (628)
T 4a0p_A 186 ----DTNLIESSNMLGLNREVIADDLP---HPFGLTQYQDYIYWTDWS-----RRSIERANK 235 (628)
T ss_dssp ----TTTEEEEEETTSCSCEEEEECCS---CEEEEEEETTEEEEEETT-----TTEEEEEET
T ss_pred ----CCCEEEEEcCCCCceEEeeccCC---CceEEEEECCEEEEecCC-----CCEEEEEEC
Confidence 2357889988653323332 222 235677788899988632 234555554
No 332
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=22.25 E-value=1.9e+02 Score=32.68 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=71.2
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEeCCCC-cE--EEC----CCCCCCCcccEEEEE--CCEEEEEccCCCCcccce
Q 005735 439 ASAAMLNGELYIFGGGDGNSWHNTVESYSPAND-EW--TSR----PSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSD 509 (680)
Q Consensus 439 ~s~v~~~~~IyV~GG~~~~~~~~~v~vyD~~t~-~W--~~l----~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ 509 (680)
=+++...+++|+|-|. .+|+++.... .. ..+ +.+|. .-. |+... ++++|+|-| +.
T Consensus 447 DAit~~rg~~yfFKg~-------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~ID-AA~~~~~~~k~yFFkG-------~~ 510 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPE-KID-AVYEAPQEEKAVFFAG-------NE 510 (631)
T ss_dssp SEEEECSSSEEEECSS-------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCS-BCCEETTTTEEEEEET-------TE
T ss_pred ceeEecCCcEEEEcCC-------EEEEEcCCCCCCCCceeccccCCCCCc-cce-EEEEECCCCEEEEEec-------CE
Confidence 3455668899999773 4677765432 11 111 22331 122 22222 678999865 45
Q ss_pred EEEEeCCCc--cE-EEccc--cccc--ccceEEEE--ECCEEEEEcCCCCCCcCceeEEEeCCCCcEE-----Eecc-C-
Q 005735 510 VEMLDLDIG--KW-IRTRS--MLQK--RFALAAAE--LNGVLYATGGYDGNEYMNSAERFDPREHYWT-----KIAN-M- 573 (680)
Q Consensus 510 ve~yD~~t~--~W-~~i~~--~p~~--r~~~s~~~--~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~W~-----~v~~-~- 573 (680)
.++|+..+. -+ ..+.. +|.. +.. ++.. .++++|+|-| +..|+||..++.-. .+.. .
T Consensus 511 yWry~~~~l~~GYPk~Is~~G~P~~~~~ID-AAf~~~~~gktYFFkG-------~~ywryd~~~~~vd~gYPk~i~~~w~ 582 (631)
T 1ck7_A 511 YWIYSASTLERGYPKPLTSLGLPPDVQRVD-AAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWN 582 (631)
T ss_dssp EEEEETTEECTTCCEEGGGGTCCTTCCCCC-BCCCCTTTCEEEEEET-------TEEEEEETTTTEECTTCCEETTTSCS
T ss_pred EEEECCCccccCCCccchhcCCCCCCCcce-eEEEecCCCeEEEEEC-------CEEEEEcCCcccccCCCCcchHhhcC
Confidence 677774211 00 11111 1111 111 1222 3689999976 36899997655311 1110 0
Q ss_pred CCCCceeEEEEEC--CEEEEEeccCCCCCCCeEEEEeCCCC
Q 005735 574 NRRRGCHSLAVLN--GKLYALGGFDGSAMVPSIEVYDPRLG 612 (680)
Q Consensus 574 p~~r~~~s~v~~~--~~IyviGG~~~~~~~~~v~~yD~~t~ 612 (680)
..+...-++.... +++|++-| +..|.||..+.
T Consensus 583 G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~ 616 (631)
T 1ck7_A 583 AIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSL 616 (631)
T ss_dssp SCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBT
T ss_pred CCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccc
Confidence 1122223333333 78888876 34677776543
No 333
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=21.73 E-value=7e+02 Score=26.02 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=76.8
Q ss_pred ceEEEcC---CCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCCCccceEEEEE-CCEEEEEecCCCCCccceEEEE
Q 005735 391 DELHLDP---SESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESY 466 (680)
Q Consensus 391 ~~~~v~~---~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~~R~~~s~v~~-~~~IyV~GG~~~~~~~~~v~vy 466 (680)
....+.+ ++.||+.-.. ..+.++|+.++....+.. .......+++. ++.|||...... .....+..+
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~------~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~ 212 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQR------DAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLF 212 (433)
T ss_dssp CEEEECTTTTTCEEEEECBT------SCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEE
T ss_pred ceEEEccccCCCEEEEEeCC------CCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCC-cccceEEEE
Confidence 4556665 4889887432 579999998888877643 11223333333 455888764321 111235555
Q ss_pred eCCCCcE---EECCCCCCCCcccEEEEE--CCEEEEEccCCCCcccceEEEEeCCCccE-EEcccccccccceEEEEE--
Q 005735 467 SPANDEW---TSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKW-IRTRSMLQKRFALAAAEL-- 538 (680)
Q Consensus 467 D~~t~~W---~~l~~lp~~r~~~a~~v~--~gkIyV~GG~~~~~~~~~ve~yD~~t~~W-~~i~~~p~~r~~~s~~~~-- 538 (680)
+.... | ..++.+..| ...++- ++.||+... ....+.+||+.+++- ..+...........++..
T Consensus 213 ~~~~~-~~~~~~~~~~~~P---~giavd~~~G~lyv~d~-----~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 213 TRASG-FTERLSLCNARGA---KTCAVHPQNGKIYYTRY-----HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp CGGGT-TCCEEEEEECSSB---CCCEECTTTCCEEECBT-----TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred ECCCC-eeccccccccCCC---CEEEEeCCCCeEEEEEC-----CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence 54322 2 122211111 122222 678888642 234689999987665 222211111111223332
Q ss_pred CCEEEEEcCCCCCCcCceeEEEeCC
Q 005735 539 NGVLYATGGYDGNEYMNSAERFDPR 563 (680)
Q Consensus 539 ~g~Lyv~GG~~~~~~~~~v~~yD~~ 563 (680)
++.||+.-- ....|+++|..
T Consensus 284 G~~LYvad~-----~~~~I~~~~~d 303 (433)
T 4hw6_A 284 GDWAYIIYN-----GKHCIYRVDYN 303 (433)
T ss_dssp SSEEEEEET-----TTTEEEEEEBC
T ss_pred CCEEEEEeC-----CCCEEEEEeCC
Confidence 345888742 22468886654
No 334
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=21.19 E-value=6.8e+02 Score=25.64 Aligned_cols=186 Identities=15% Similarity=0.226 Sum_probs=91.4
Q ss_pred ceEEEEeCCCCcEEECCCCCC------CCcccEEEEE-----CCEEEEEcc---C---CCCc--ccceEEEEeCC---Cc
Q 005735 461 NTVESYSPANDEWTSRPSLNG------TKGSLAGATI-----DNKIFAIGG---G---NGLE--CFSDVEMLDLD---IG 518 (680)
Q Consensus 461 ~~v~vyD~~t~~W~~l~~lp~------~r~~~a~~v~-----~gkIyV~GG---~---~~~~--~~~~ve~yD~~---t~ 518 (680)
..|.++|+..+.-..+ .++. +....+...+ +++|+++.- . .+.. ..+.+..||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC
Confidence 4688888876543333 2221 1222233344 567888521 0 1111 24668999988 44
Q ss_pred --cEEE-ccccccc-------cc-ceEEEEE--CCEEEEEcCCCCCCcCceeEEEeCCCCc---EEEeccCCCCC-ceeE
Q 005735 519 --KWIR-TRSMLQK-------RF-ALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHY---WTKIANMNRRR-GCHS 581 (680)
Q Consensus 519 --~W~~-i~~~p~~-------r~-~~s~~~~--~g~Lyv~GG~~~~~~~~~v~~yD~~t~~---W~~v~~~p~~r-~~~s 581 (680)
.|.. +...... ++ .+.-+.+ +|.+||.+.... ..|+++++.... |-.-.+....+ ....
T Consensus 114 ~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~----~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nG 189 (334)
T 2p9w_A 114 KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM----PAIARVSADGKTVSTFAWESGNGGQRPGYSG 189 (334)
T ss_dssp CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS----CEEEEECTTSCCEEEEEECCCCSSSCCSCSE
T ss_pred CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC----CeEEEEeCCCCEEeeeeecCCCcccccCcce
Confidence 4543 2221111 22 2222333 689999765331 469999997653 43222222223 2345
Q ss_pred EEEE--CCEEEEEeccCCCCCCCeEEEEeCCCCcE--EEcC--CCC-CCccceE--EEEECCEEEEEecccCCCcccceE
Q 005735 582 LAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSW--MSGE--PMK-LSRGYLG--AAVVKEAIYVIGGVKNGSEIVDTV 652 (680)
Q Consensus 582 ~v~~--~~~IyviGG~~~~~~~~~v~~yD~~t~~W--~~v~--~lp-~~R~~~s--~v~~~~~lyV~GG~~~~~~~~~~v 652 (680)
++.. +..|++..+ . ..++.||+.+... ..+. ... .....-. .+-.+++++++.-.. ..+
T Consensus 190 Iv~~pdg~~Liv~~~-~-----g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------~~~ 257 (334)
T 2p9w_A 190 ITFDPHSNKLIAFGG-P-----RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------PYA 257 (334)
T ss_dssp EEEETTTTEEEEESS-S-----SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------TEE
T ss_pred EEEeCCCCEEEEEcC-C-----CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC------CCE
Confidence 5666 445666654 2 4589999885433 1121 100 0011112 223588886665322 124
Q ss_pred EEEcCCCCeEe
Q 005735 653 ERFKEGQGWEE 663 (680)
Q Consensus 653 e~y~~~~~W~~ 663 (680)
.++...+.|+.
T Consensus 258 ~~l~S~DgW~s 268 (334)
T 2p9w_A 258 ISFRSWDNWKS 268 (334)
T ss_dssp EEEECSSTTSE
T ss_pred EEEECCCCcce
Confidence 55555555855
No 335
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=21.13 E-value=8.8e+02 Score=26.93 Aligned_cols=80 Identities=6% Similarity=0.056 Sum_probs=44.3
Q ss_pred eEEEcCCCEEEEEecCCCCcccCeEEEEeCCCCeEEEcCCCCC-Cccc--e--EEEEECCEEEEEecCCC----CCccce
Q 005735 392 ELHLDPSESIYLVGGCDGDSWLSTLELYLPSCDVIKTLKPMSS-ARSY--A--SAAMLNGELYIFGGGDG----NSWHNT 462 (680)
Q Consensus 392 ~~~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~mp~-~R~~--~--s~v~~~~~IyV~GG~~~----~~~~~~ 462 (680)
.....+++.+++.+ + ..++.||..++.-..+-.... .... . -...-+++.++++.... .....+
T Consensus 21 ~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 44555577666665 2 368999999987655522111 1111 1 11122555445544321 223467
Q ss_pred EEEEeCCCCcEEECCC
Q 005735 463 VESYSPANDEWTSRPS 478 (680)
Q Consensus 463 v~vyD~~t~~W~~l~~ 478 (680)
+++||..+++...+..
T Consensus 94 ~~~~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 94 YDIYDLNKRQLITEER 109 (740)
T ss_dssp EEEEETTTTEECCSSC
T ss_pred EEEEECCCCcEEEccc
Confidence 8999999998766544
No 336
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=20.57 E-value=9e+02 Score=26.82 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=87.7
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCcEEECC-CCCC-CCcccEEEE-ECCEEEEEccCCCCcccceEEEEeCCCccE-
Q 005735 445 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRP-SLNG-TKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKW- 520 (680)
Q Consensus 445 ~~~IyV~GG~~~~~~~~~v~vyD~~t~~W~~l~-~lp~-~r~~~a~~v-~~gkIyV~GG~~~~~~~~~ve~yD~~t~~W- 520 (680)
+|+.++.++.++ .+.++|..+ .+..+. .++. .+..++.+. -+|++++.||.++ .+..||+.++.-
T Consensus 96 dG~~LAs~s~dg-----~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DG-----tVkIWd~~~~~l~ 164 (588)
T 2j04_A 96 IDDWMAVLSNNG-----NVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDG-----ELQFFSIRKNSEN 164 (588)
T ss_dssp SSSCEEEEETTS-----CEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTS-----EEEEEECCCCTTT
T ss_pred CCCEEEEEeCCC-----cEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCC-----EEEEEECCCCccc
Confidence 677777777653 467777443 444433 2221 123333333 3788888887653 477899887641
Q ss_pred ----EEccccc---c--cccceEEEEECCEEEEEcCCCCCCcCceeEEEeCCCCc----EEEeccCCCCCceeEEEEECC
Q 005735 521 ----IRTRSML---Q--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY----WTKIANMNRRRGCHSLAVLNG 587 (680)
Q Consensus 521 ----~~i~~~p---~--~r~~~s~~~~~g~Lyv~GG~~~~~~~~~v~~yD~~t~~----W~~v~~~p~~r~~~s~v~~~~ 587 (680)
..+..+. . ...-.+++...+. ++.++.+ +.+.+||..++. |+.+... ......+++..+
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D-----~tVrlWd~~~~~~~~~~~tL~~~-h~~~V~svaFsg- 236 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSN-----NSVFSMTVSASSHQPVSRMIQNA-SRRKITDLKIVD- 236 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETT-----CCEEEECCCSSSSCCCEEEEECC-CSSCCCCEEEET-
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc-EEEEeCC-----CeEEEEECCCCccccceeeeccc-ccCcEEEEEEEC-
Confidence 1122211 1 1123334444455 6666655 367888887655 4444221 112223333335
Q ss_pred EEEEEeccCCCCCCCeEEEEeCCCCcEEEcCCCCCCccceEEEE--E-CCEEEEEecc
Q 005735 588 KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAV--V-KEAIYVIGGV 642 (680)
Q Consensus 588 ~IyviGG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~v~--~-~~~lyV~GG~ 642 (680)
..++.++. ..|.+||..+..-..... ...-....++. - ++.++++++.
T Consensus 237 ~~LASa~~------~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 237 YKVVLTCP------GYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp TEEEEECS------SEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSS
T ss_pred CEEEEEeC------CeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcC
Confidence 44444441 478999988776644321 11122223333 2 4556666653
Done!