BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005736
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELDEIGGGE 547
KI++TVV + L KDK+G DPYV +Q GK +RT+T + + N VW + F + +
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 548 CLMVKCYNEE 557
+ V+ +E+
Sbjct: 78 RIKVRVLDED 87
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
I + +V A+ L A D G+SDPYV VQ G KKRTK
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK 54
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 538
T +I+VTV E ++L+P D +G DPYVKL+ Q+TRT + N VWN+ F
Sbjct: 18 TADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 15/56 (26%)
Query: 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQ 647
G L+L+I A D+ I + + EAR+L+ D G SDPYVK++
Sbjct: 8 GRLQLEIRAPTADE---------------IHVTVGEARNLIPMDPNGLSDPYVKLK 48
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFE----LDEI 543
V +++ DL KD +G DPYVK+ K Q + N ++N+ F+ L E+
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 544 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL---------EKVNTGEL 594
+ L Y+ + F ++ +V L+ L+E + + PL EK + GEL
Sbjct: 84 AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 141
Query: 595 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR 654
+ G + + I++A +L A DL G SDPYVK +R
Sbjct: 142 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 187
Query: 655 TK 656
K
Sbjct: 188 LK 189
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 617 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKRTKLTV 659
G+ + + I++A DL A D G SDPYVK+ D KK+ + V
Sbjct: 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV 61
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFE----LDEI 543
V +++ DL KD +G DPYVK+ K Q + N ++N+ F+ L E+
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 544 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL---------EKVNTGEL 594
+ L Y+ + F ++ +V L+ L+E + + PL EK + GEL
Sbjct: 85 AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 142
Query: 595 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR 654
+ G + + I++A +L A DL G SDPYVK +R
Sbjct: 143 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 188
Query: 655 TK 656
K
Sbjct: 189 LK 190
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 617 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKRTKLTV 659
G+ + + I++A DL A D G SDPYVK+ D KK+ + V
Sbjct: 19 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV 62
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRT-AHSPNHVWNQKFEL- 540
+ T++ K L P D +G DPYVKL + K+ RT+T ++ N VWN+ +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL--RTKTLRNTRNPVWNETLQYH 86
Query: 541 ---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 589
+E + L + +E+ FG +E +G R +L+ L ++ + LE+V
Sbjct: 87 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 139
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRT-AHSPNHVWNQKFEL- 540
+ T++ K L P D +G DPYVKL + K+ RT+T ++ N VWN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL--RTKTLRNTRNPVWNETLQYH 88
Query: 541 ---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 589
+E + L + +E+ FG +E +G R +L+ L ++ + LE+V
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 538
T K++VTV + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ F
Sbjct: 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 72
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 538
T K++VTV + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ F
Sbjct: 15 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 73
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFEL----DEI 543
V +++ +L D G DPYVK+ K + + N V+N++F E+
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 544 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR 602
G + L++ Y+ + F ++ G +V + + G V + W L+ + E +
Sbjct: 83 AG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE------KEEQEK 135
Query: 603 VDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQ 647
+ D S +G + +VI+EA++L D+ G SDPYVK+
Sbjct: 136 LGDICFSLRYVPTAGK--LTVVILEAKNLKKMDVGGLSDPYVKIH 178
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 618 NGWIELVIVEARDLVAADLRGTSDPYVKV 646
N + + I++A +L A D+ GTSDPYVKV
Sbjct: 18 NNQLLVGIIQAAELPALDMGGTSDPYVKV 46
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 516
T K+ V ++E K+L D G DPYVK+
Sbjct: 148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 178
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 538
K++VTV + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ F
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 74
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQ--KFELDEI 543
V V + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ +F+L E
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 544 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593
L V+ ++ ++ ++ MGS + L + V D W L GE
Sbjct: 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 144
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 623 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKLTVAC 661
+V+ +A++LV D G SDPYVK++ + K++TK T+ C
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK-TIKC 77
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--------KIVQRTRTAHSPNHVWNQKFE 539
R + V VV G DL KD G DPYVKL +VQ + N WN++F
Sbjct: 21 RILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFY 80
Query: 540 LDEIGGGECLMVKCYNE-EIFGDENMGSARVNLEGL 574
L+ + ++E + D+ +G V L L
Sbjct: 81 FRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQ--KFELDEI 543
V V + K+L+P D +G DPYVKL+ + Q+T+T S N WN+ +F+L E
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 544 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593
L V+ ++ ++ ++ MGS + L + V D W L GE
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 285
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 623 LVIVEARDLVAADLRGTSDPYVKVQ 647
+V+ +A++LV D G SDPYVK++
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLK 200
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 616 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR 654
S + +V+++AR L +D+ G SDPYVKV KKR
Sbjct: 27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR 65
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK--LQYGKIVQRTRTAH----SPNHVWNQKFE 539
T + V V++ + L D SG DPYVK L + K + H +PN V+N+ F
Sbjct: 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87
Query: 540 LD 541
D
Sbjct: 88 FD 89
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 625 IVEARDLVAADLRGTSDPYVKV 646
I++AR+L A D+ GTSDPYVKV
Sbjct: 22 IIKARNLKAMDIGGTSDPYVKV 43
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELDEIGGGEC 548
+ V V++ DL+ D SGK DP+ L+ G +T T + N WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 549 LMVKCYNEEIFGDE 562
L V ++E+ GD+
Sbjct: 75 LEVTVFDED--GDK 86
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRT 655
G +++ +++A DL+AAD G SDP+ ++ G+ + +T
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQT 49
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 625 IVEARDLVAADLRGTSDPYVKV 646
I++A +L A D+ GTSDPYVKV
Sbjct: 48 IIQAAELPALDMGGTSDPYVKV 69
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFEL----DEI 543
V +++ +L D G DPYVK+ K + + N V+N++F E+
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 544 GGGECLMVKCYNEEIFGDEN-MGSARVNLEGLVEGSVRDIWVPLE 587
GG+ L++ Y+ + F + +G +V + + G V + W L+
Sbjct: 106 -GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 625 IVEARDLVAADLRGTSDPYVKV 646
I++A +L A D+ GTSDPYVKV
Sbjct: 40 IIQAAELPALDMGGTSDPYVKV 61
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFEL----DEI 543
V +++ +L D G DPYVK+ K + + N V+N++F E+
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 544 GGGECLMVKCYNEEIFGDEN-MGSARVNLEGLVEGSVRDIWVPLE 587
GG+ L++ Y+ + F + +G +V + + G V + W L+
Sbjct: 98 -GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 625 IVEARDLVAADLRGTSDPYVKV 646
I++A +L A D+ GTSDPYVKV
Sbjct: 40 IIQAAELPALDMGGTSDPYVKV 61
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL----QYGKIVQRTRTAHSPNHVWNQKFEL----DEI 543
V +++ +L D G DPYVK+ K + + N V+N++F E+
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 544 GGGECLMVKCYNEEIFGDEN-MGSARVNLEGLVEGSVRDIWVPLE 587
GG+ L++ Y+ + F + +G +V + + G V + W L+
Sbjct: 98 -GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQ 647
G + +VI+EA++L D+ G SDPYVK+
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIH 53
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 516
T K+ V ++E K+L D G DPYVK+
Sbjct: 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 53
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 625 IVEARDLVAADLRGTSDPYVKV 646
I++A +L A D+ GTSDPYVKV
Sbjct: 23 IIQAAELPALDMGGTSDPYVKV 44
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQ 647
G + +VI+EA++L D+ G SDPYVK+
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIH 46
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 516
T K+ V ++E K+L D G DPYVK+
Sbjct: 16 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 46
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQ 647
G + +VI+EA++L D+ G SDPYVK+
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIH 45
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 516
T K+ V ++E K+L D G DPYVK+
Sbjct: 15 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH 45
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 16/56 (28%)
Query: 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKV 646
TGE++LQI N GN I I++AR+LV D G SDP+VKV
Sbjct: 6 TGEIQLQI--------------NYDLGNLIIH--ILQARNLVPRDNNGYSDPFVKV 45
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 625 IVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKLTVACLSGH 665
I++A++L A D GTSDP+VK+ KK TK+ L+ H
Sbjct: 32 IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH 75
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHV--WNQKFELDEIGGGE 547
+ V +V K L D DPYV+L Q++ A WN+ F G
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 548 CLMVKCYNEEI-FGDENMGSARVNLEGL-VEGSV 579
L K +++++ D+ +G A + LE + VEGS+
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 494 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELD------EIGGG 546
+VE +PK K GK DP V + + ++T+ + N VWN+ E D +
Sbjct: 12 IVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSS 71
Query: 547 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI 582
++VK + E I ++ +G+A V L+ L R +
Sbjct: 72 LGIIVKDF-ETIGQNKLIGTATVALKDLTGDQSRSL 106
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 483 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH 528
I R + + ++EGK L+ K + G CDPYVK+ I + +R H
Sbjct: 22 IDAQDRVLLLHIIEGKGLISK-QPGTCDPYVKISL--IPEDSRLRH 64
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 353 TDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEV--------KMKY 404
T R GS+P+ + +M E G + F+LY I + T V K K
Sbjct: 231 TIGRDGSEPKMQRIGDMTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKEKV 290
Query: 405 VADDSTTFWAIGPDSGIIAKHA 426
AD+ W G + +AK++
Sbjct: 291 YADEIAKAWESGENLERVAKYS 312
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 353 TDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEV--------KMKY 404
T R GS+P+ + +M E G + F+LY I + T V K K
Sbjct: 231 TIGRDGSEPKMQRIGDMTAVEVKGRIHFDLYHVIRTTINLPTYTLEAVYEAIFGKPKEKV 290
Query: 405 VADDSTTFWAIGPDSGIIAKHA 426
AD+ W G + +AK++
Sbjct: 291 YADEIAKAWESGENLERVAKYS 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,286,388
Number of Sequences: 62578
Number of extensions: 766859
Number of successful extensions: 1564
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 67
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)