Query 005736
Match_columns 680
No_of_seqs 509 out of 2945
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 12:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 6.5E-81 1.4E-85 695.0 51.2 591 21-678 144-771 (1227)
2 KOG1028 Ca2+-dependent phospho 99.9 8.6E-26 1.9E-30 243.8 22.1 174 488-675 167-359 (421)
3 KOG1028 Ca2+-dependent phospho 99.9 2.1E-23 4.6E-28 225.2 23.3 206 293-573 165-393 (421)
4 cd04016 C2_Tollip C2 domain pr 99.8 5.6E-20 1.2E-24 164.4 14.7 112 488-600 2-121 (121)
5 COG5038 Ca2+-dependent lipid-b 99.8 2.3E-18 5.1E-23 194.8 28.5 380 253-676 654-1098(1227)
6 KOG2059 Ras GTPase-activating 99.8 7.8E-20 1.7E-24 196.2 15.5 232 295-601 5-276 (800)
7 cd04016 C2_Tollip C2 domain pr 99.8 7.1E-19 1.5E-23 157.2 14.5 113 294-452 1-120 (121)
8 KOG2059 Ras GTPase-activating 99.8 3.4E-19 7.3E-24 191.4 11.7 176 489-677 6-192 (800)
9 cd08682 C2_Rab11-FIP_classI C2 99.8 1.5E-18 3.2E-23 157.8 13.3 110 490-599 1-126 (126)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 4.4E-18 9.5E-23 153.1 14.4 107 490-596 2-125 (126)
11 cd08376 C2B_MCTP_PRT C2 domain 99.8 9.2E-18 2E-22 150.3 15.7 112 489-601 1-115 (116)
12 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.2E-17 2.6E-22 150.8 15.2 113 489-601 1-120 (121)
13 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.1E-17 2.3E-22 151.1 14.0 113 488-600 1-121 (121)
14 cd08681 C2_fungal_Inn1p-like C 99.8 6.9E-18 1.5E-22 151.6 12.3 113 488-600 1-118 (118)
15 cd08375 C2_Intersectin C2 doma 99.7 2.6E-17 5.7E-22 151.1 15.3 114 487-600 14-135 (136)
16 cd04024 C2A_Synaptotagmin-like 99.7 2.1E-17 4.6E-22 150.6 13.8 113 488-600 1-128 (128)
17 cd04019 C2C_MCTP_PRT_plant C2 99.7 3.3E-17 7.2E-22 152.7 14.6 112 490-601 2-132 (150)
18 cd08682 C2_Rab11-FIP_classI C2 99.7 2.6E-17 5.6E-22 149.6 13.1 112 297-451 1-125 (126)
19 cd04022 C2A_MCTP_PRT_plant C2 99.7 3E-17 6.6E-22 149.4 13.5 112 490-601 2-126 (127)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 3.7E-17 8E-22 147.2 13.8 110 490-599 2-120 (121)
21 cd04036 C2_cPLA2 C2 domain pre 99.7 5.2E-17 1.1E-21 146.1 14.2 111 490-600 2-117 (119)
22 cd08375 C2_Intersectin C2 doma 99.7 7.8E-17 1.7E-21 148.0 15.5 122 292-453 12-135 (136)
23 cd08379 C2D_MCTP_PRT_plant C2 99.7 5E-17 1.1E-21 146.3 13.4 91 296-408 1-100 (126)
24 cd08381 C2B_PI3K_class_II C2 d 99.7 7.8E-17 1.7E-21 145.3 13.6 98 488-586 13-121 (122)
25 KOG1030 Predicted Ca2+-depende 99.7 2E-17 4.3E-22 150.8 9.6 91 294-407 5-96 (168)
26 cd08393 C2A_SLP-1_2 C2 domain 99.7 8.1E-17 1.8E-21 146.0 13.4 100 488-587 15-125 (125)
27 cd04028 C2B_RIM1alpha C2 domai 99.7 1.7E-16 3.8E-21 146.2 15.6 102 488-589 29-139 (146)
28 cd08678 C2_C21orf25-like C2 do 99.7 1.3E-16 2.8E-21 145.0 14.3 112 490-603 1-122 (126)
29 cd08677 C2A_Synaptotagmin-13 C 99.7 1.2E-16 2.5E-21 140.7 13.0 97 487-586 13-118 (118)
30 cd04015 C2_plant_PLD C2 domain 99.7 2.2E-16 4.7E-21 148.8 15.4 113 488-600 7-157 (158)
31 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.2E-16 2.5E-21 143.9 13.0 107 490-600 2-119 (121)
32 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.1E-16 4.5E-21 143.2 14.2 100 488-587 15-125 (125)
33 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.3E-16 4.9E-21 141.3 14.3 112 296-453 1-114 (116)
34 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.2E-16 6.8E-21 142.3 15.4 111 489-602 5-124 (126)
35 cd04042 C2A_MCTP_PRT C2 domain 99.7 2.8E-16 6E-21 141.8 14.8 113 297-454 2-120 (121)
36 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.7E-16 5.8E-21 142.6 14.3 100 488-587 16-123 (124)
37 cd04050 C2B_Synaptotagmin-like 99.7 2.1E-16 4.7E-21 138.7 12.4 98 490-589 2-103 (105)
38 cd04036 C2_cPLA2 C2 domain pre 99.7 3.2E-16 7E-21 140.9 13.7 111 297-453 2-117 (119)
39 cd08392 C2A_SLP-3 C2 domain fi 99.7 5E-16 1.1E-20 141.0 14.5 100 488-587 15-128 (128)
40 cd08395 C2C_Munc13 C2 domain t 99.7 3.4E-16 7.3E-21 139.7 13.0 99 490-589 2-113 (120)
41 cd08377 C2C_MCTP_PRT C2 domain 99.7 7.3E-16 1.6E-20 138.6 15.2 111 488-600 1-118 (119)
42 cd08681 C2_fungal_Inn1p-like C 99.7 3.5E-16 7.5E-21 140.5 13.0 112 295-452 1-117 (118)
43 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.6E-16 7.8E-21 143.6 13.1 112 489-600 1-132 (133)
44 cd04019 C2C_MCTP_PRT_plant C2 99.7 4.7E-16 1E-20 145.0 14.0 118 296-454 1-132 (150)
45 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 5.3E-16 1.2E-20 139.8 13.8 110 490-599 2-120 (121)
46 KOG1030 Predicted Ca2+-depende 99.7 1.3E-16 2.7E-21 145.6 9.7 91 488-578 6-98 (168)
47 cd04014 C2_PKC_epsilon C2 doma 99.7 8.7E-16 1.9E-20 140.8 15.2 111 488-601 4-129 (132)
48 cd08385 C2A_Synaptotagmin-1-5- 99.7 9E-16 1.9E-20 139.1 15.1 100 488-587 16-123 (124)
49 cd08391 C2A_C2C_Synaptotagmin_ 99.7 6E-16 1.3E-20 139.6 13.7 115 295-451 1-119 (121)
50 cd04022 C2A_MCTP_PRT_plant C2 99.7 4.3E-16 9.2E-21 141.8 12.8 114 297-453 2-125 (127)
51 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.9E-16 1.3E-20 140.1 13.6 100 489-588 1-103 (123)
52 cd08685 C2_RGS-like C2 domain 99.7 5.8E-16 1.3E-20 138.8 12.9 98 488-586 12-119 (119)
53 cd04024 C2A_Synaptotagmin-like 99.7 7.6E-16 1.6E-20 140.4 13.8 115 295-451 1-126 (128)
54 cd04017 C2D_Ferlin C2 domain f 99.7 1.2E-15 2.6E-20 140.3 14.9 116 488-603 1-134 (135)
55 cd04031 C2A_RIM1alpha C2 domai 99.7 1E-15 2.2E-20 139.0 14.1 99 488-587 16-125 (125)
56 cd08388 C2A_Synaptotagmin-4-11 99.7 2.8E-15 6.1E-20 136.3 16.0 100 488-587 16-127 (128)
57 cd08389 C2A_Synaptotagmin-14_1 99.7 1.8E-15 4E-20 136.8 14.4 100 488-588 16-124 (124)
58 cd04044 C2A_Tricalbin-like C2 99.7 1.3E-15 2.7E-20 138.1 13.3 115 488-602 2-124 (124)
59 cd04039 C2_PSD C2 domain prese 99.7 8.6E-16 1.9E-20 135.1 11.6 95 295-408 1-98 (108)
60 cd04010 C2B_RasA3 C2 domain se 99.7 1E-15 2.2E-20 142.0 12.3 98 490-589 2-123 (148)
61 cd04050 C2B_Synaptotagmin-like 99.6 1.2E-15 2.6E-20 133.9 11.9 101 296-442 1-103 (105)
62 cd08394 C2A_Munc13 C2 domain f 99.6 1.9E-15 4E-20 134.3 12.7 97 488-588 2-101 (127)
63 cd08395 C2C_Munc13 C2 domain t 99.6 2E-15 4.4E-20 134.7 13.0 88 297-408 2-101 (120)
64 cd08386 C2A_Synaptotagmin-7 C2 99.6 3.9E-15 8.5E-20 135.1 15.1 100 488-587 16-124 (125)
65 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.4E-15 5.1E-20 142.3 13.9 103 486-588 25-138 (162)
66 cd04046 C2_Calpain C2 domain p 99.6 4.9E-15 1.1E-19 134.6 15.4 112 488-601 3-122 (126)
67 cd04030 C2C_KIAA1228 C2 domain 99.6 4.2E-15 9.1E-20 135.3 15.0 100 488-587 16-127 (127)
68 cd08680 C2_Kibra C2 domain fou 99.6 1.3E-15 2.8E-20 137.1 11.3 100 487-586 13-124 (124)
69 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 2.8E-15 6E-20 135.0 13.4 110 297-451 2-119 (121)
70 cd04027 C2B_Munc13 C2 domain s 99.6 3E-15 6.5E-20 136.2 13.6 108 489-598 2-127 (127)
71 cd04046 C2_Calpain C2 domain p 99.6 7.9E-15 1.7E-19 133.2 16.0 90 293-406 1-91 (126)
72 cd08378 C2B_MCTP_PRT_plant C2 99.6 2.8E-15 6.2E-20 134.9 12.7 113 296-453 1-119 (121)
73 cd08521 C2A_SLP C2 domain firs 99.6 4.5E-15 9.8E-20 134.3 14.0 99 488-586 14-123 (123)
74 cd08377 C2C_MCTP_PRT C2 domain 99.6 5.4E-15 1.2E-19 133.0 14.3 90 295-407 1-91 (119)
75 cd08400 C2_Ras_p21A1 C2 domain 99.6 6E-15 1.3E-19 133.9 14.7 112 295-454 4-123 (126)
76 cd04044 C2A_Tricalbin-like C2 99.6 4.9E-15 1.1E-19 134.2 13.8 93 294-408 1-96 (124)
77 cd08390 C2A_Synaptotagmin-15-1 99.6 6.6E-15 1.4E-19 133.2 14.6 101 488-588 14-123 (123)
78 cd04043 C2_Munc13_fungal C2 do 99.6 7E-15 1.5E-19 133.7 14.8 111 489-601 2-121 (126)
79 cd08382 C2_Smurf-like C2 domai 99.6 3.3E-15 7.2E-20 135.1 12.5 108 490-598 2-122 (123)
80 cd08688 C2_KIAA0528-like C2 do 99.6 2.4E-15 5.1E-20 133.2 11.2 99 490-588 1-109 (110)
81 cd04015 C2_plant_PLD C2 domain 99.6 6.2E-15 1.3E-19 138.9 14.7 136 294-453 6-157 (158)
82 cd08678 C2_C21orf25-like C2 do 99.6 5.3E-15 1.1E-19 134.4 13.5 111 297-454 1-120 (126)
83 cd08373 C2A_Ferlin C2 domain f 99.6 8.5E-15 1.8E-19 133.3 14.7 109 494-604 2-119 (127)
84 cd08381 C2B_PI3K_class_II C2 d 99.6 3.3E-15 7.2E-20 134.7 11.6 91 294-408 12-112 (122)
85 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 6.1E-15 1.3E-19 132.9 13.0 111 297-451 2-119 (121)
86 cd08677 C2A_Synaptotagmin-13 C 99.6 4E-15 8.6E-20 131.0 10.9 92 289-406 8-107 (118)
87 cd04011 C2B_Ferlin C2 domain s 99.6 6.7E-15 1.4E-19 130.6 12.2 98 487-588 3-110 (111)
88 cd04041 C2A_fungal C2 domain f 99.6 3E-15 6.6E-20 132.7 9.9 98 488-588 1-108 (111)
89 cd04039 C2_PSD C2 domain prese 99.6 5.4E-15 1.2E-19 130.0 11.4 91 488-578 1-99 (108)
90 cd04014 C2_PKC_epsilon C2 doma 99.6 1.5E-14 3.2E-19 132.6 14.7 124 294-454 3-129 (132)
91 cd04041 C2A_fungal C2 domain f 99.6 4.3E-15 9.3E-20 131.8 10.6 91 295-408 1-100 (111)
92 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 1.1E-14 2.5E-19 131.7 13.5 90 296-408 1-92 (123)
93 cd04045 C2C_Tricalbin-like C2 99.6 9.8E-15 2.1E-19 131.2 12.7 107 488-595 1-110 (120)
94 cd04018 C2C_Ferlin C2 domain t 99.6 6.6E-15 1.4E-19 136.8 11.5 104 490-593 2-130 (151)
95 cd04029 C2A_SLP-4_5 C2 domain 99.6 8.5E-15 1.8E-19 132.6 11.9 97 289-408 9-115 (125)
96 cd04038 C2_ArfGAP C2 domain pr 99.6 2.8E-14 6E-19 132.0 15.3 90 295-408 2-92 (145)
97 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.4E-14 3E-19 133.1 13.1 118 296-452 1-131 (133)
98 cd08394 C2A_Munc13 C2 domain f 99.6 1.2E-14 2.5E-19 129.3 11.9 87 295-408 2-88 (127)
99 cd04026 C2_PKC_alpha_gamma C2 99.6 1.5E-14 3.3E-19 132.3 13.0 107 488-595 13-128 (131)
100 cd08393 C2A_SLP-1_2 C2 domain 99.6 8.8E-15 1.9E-19 132.6 11.2 96 289-407 9-114 (125)
101 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.5E-14 3.3E-19 131.2 12.3 96 289-407 9-114 (128)
102 cd04027 C2B_Munc13 C2 domain s 99.6 2.6E-14 5.6E-19 130.0 13.7 89 296-406 2-101 (127)
103 cd04049 C2_putative_Elicitor-r 99.6 2.6E-14 5.5E-19 129.6 13.6 102 488-589 1-109 (124)
104 cd04052 C2B_Tricalbin-like C2 99.6 1.4E-14 3E-19 128.5 11.4 98 505-602 9-110 (111)
105 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.6E-14 3.5E-19 130.8 12.0 96 289-407 10-112 (124)
106 cd08382 C2_Smurf-like C2 domai 99.6 3.1E-14 6.8E-19 128.7 13.2 89 297-408 2-93 (123)
107 cd04028 C2B_RIM1alpha C2 domai 99.6 2.3E-14 5E-19 132.1 12.5 90 294-406 28-125 (146)
108 cd04051 C2_SRC2_like C2 domain 99.6 1.3E-14 2.8E-19 131.7 10.5 108 489-596 1-125 (125)
109 cd04013 C2_SynGAP_like C2 doma 99.6 5.7E-14 1.2E-18 129.1 14.6 111 488-603 11-141 (146)
110 cd08688 C2_KIAA0528-like C2 do 99.6 1.7E-14 3.7E-19 127.7 10.7 88 297-407 1-94 (110)
111 cd08388 C2A_Synaptotagmin-4-11 99.6 3.3E-14 7.1E-19 129.3 12.3 96 289-407 10-114 (128)
112 cd08406 C2B_Synaptotagmin-12 C 99.6 8.7E-14 1.9E-18 127.4 14.9 98 488-587 15-122 (136)
113 cd04017 C2D_Ferlin C2 domain f 99.6 6.5E-14 1.4E-18 128.8 14.0 117 296-454 2-132 (135)
114 cd04031 C2A_RIM1alpha C2 domai 99.6 3.4E-14 7.4E-19 128.9 11.9 94 289-405 10-113 (125)
115 cd04032 C2_Perforin C2 domain 99.5 4.3E-14 9.4E-19 127.4 12.2 90 293-406 26-118 (127)
116 cd08407 C2B_Synaptotagmin-13 C 99.5 2.6E-14 5.6E-19 130.8 10.6 86 488-573 15-112 (138)
117 cd04010 C2B_RasA3 C2 domain se 99.5 4E-14 8.6E-19 131.4 12.0 86 297-407 2-109 (148)
118 cd08385 C2A_Synaptotagmin-1-5- 99.5 4.8E-14 1E-18 127.8 12.2 94 290-406 11-111 (124)
119 cd04043 C2_Munc13_fungal C2 do 99.5 1E-13 2.2E-18 126.0 14.2 115 296-454 2-121 (126)
120 cd08690 C2_Freud-1 C2 domain f 99.5 1.2E-13 2.5E-18 128.4 14.7 113 490-602 4-138 (155)
121 cd04011 C2B_Ferlin C2 domain s 99.5 4.2E-14 9.1E-19 125.5 11.3 87 295-408 4-96 (111)
122 cd08685 C2_RGS-like C2 domain 99.5 3.2E-14 6.9E-19 127.6 10.4 90 294-406 11-108 (119)
123 cd04049 C2_putative_Elicitor-r 99.5 5.2E-14 1.1E-18 127.5 12.0 91 295-408 1-97 (124)
124 cd04040 C2D_Tricalbin-like C2 99.5 7.9E-14 1.7E-18 124.5 13.0 100 490-589 1-104 (115)
125 cd08676 C2A_Munc13-like C2 dom 99.5 4.1E-14 8.8E-19 131.7 11.1 97 486-586 26-153 (153)
126 cd04038 C2_ArfGAP C2 domain pr 99.5 5.8E-14 1.3E-18 129.9 11.9 90 488-578 2-93 (145)
127 cd08675 C2B_RasGAP C2 domain s 99.5 4.6E-14 1E-18 129.8 11.1 100 490-590 1-122 (137)
128 cd04045 C2C_Tricalbin-like C2 99.5 7.6E-14 1.7E-18 125.4 11.7 91 295-408 1-93 (120)
129 cd08383 C2A_RasGAP C2 domain ( 99.5 1.5E-13 3.3E-18 123.0 13.6 105 490-600 2-117 (117)
130 cd08680 C2_Kibra C2 domain fou 99.5 8E-14 1.7E-18 125.4 11.6 96 289-407 8-113 (124)
131 cd04018 C2C_Ferlin C2 domain t 99.5 6.4E-14 1.4E-18 130.2 11.3 103 297-408 2-107 (151)
132 cd08676 C2A_Munc13-like C2 dom 99.5 7.5E-14 1.6E-18 129.9 11.4 89 291-406 24-143 (153)
133 cd04009 C2B_Munc13-like C2 dom 99.5 1.4E-13 3E-18 126.3 13.0 89 488-576 16-118 (133)
134 cd08407 C2B_Synaptotagmin-13 C 99.5 3.8E-14 8.2E-19 129.8 9.1 73 591-677 1-80 (138)
135 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 5.4E-14 1.2E-18 133.0 10.0 95 291-408 23-127 (162)
136 cd08404 C2B_Synaptotagmin-4 C2 99.5 5.7E-14 1.2E-18 129.4 9.8 99 488-588 15-123 (136)
137 cd08386 C2A_Synaptotagmin-7 C2 99.5 1.6E-13 3.6E-18 124.4 12.6 96 289-407 10-113 (125)
138 cd04030 C2C_KIAA1228 C2 domain 99.5 1.3E-13 2.8E-18 125.5 11.5 97 289-407 10-116 (127)
139 cd04032 C2_Perforin C2 domain 99.5 1.6E-13 3.4E-18 123.8 11.8 88 487-575 27-118 (127)
140 cd08373 C2A_Ferlin C2 domain f 99.5 3.9E-13 8.4E-18 122.4 14.6 108 301-455 2-117 (127)
141 cd08389 C2A_Synaptotagmin-14_1 99.5 1.5E-13 3.2E-18 124.4 11.6 96 289-407 10-112 (124)
142 cd08521 C2A_SLP C2 domain firs 99.5 1.8E-13 3.8E-18 123.8 12.0 95 289-406 8-112 (123)
143 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.2E-13 9E-18 123.7 14.5 99 488-588 15-123 (136)
144 cd08390 C2A_Synaptotagmin-15-1 99.5 2.2E-13 4.7E-18 123.3 12.4 96 289-407 8-111 (123)
145 cd08406 C2B_Synaptotagmin-12 C 99.5 1.5E-13 3.3E-18 125.8 11.4 93 289-404 9-110 (136)
146 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.4E-13 9.6E-18 121.2 14.3 99 488-586 15-123 (123)
147 cd04051 C2_SRC2_like C2 domain 99.5 1.7E-13 3.8E-18 124.3 11.6 90 296-408 1-98 (125)
148 cd08691 C2_NEDL1-like C2 domai 99.5 4.8E-13 1E-17 122.4 14.4 108 489-598 2-136 (137)
149 PLN03008 Phospholipase D delta 99.5 3.7E-13 7.9E-18 151.3 16.3 101 507-607 75-183 (868)
150 cd08409 C2B_Synaptotagmin-15 C 99.5 8.4E-14 1.8E-18 128.2 9.3 99 488-587 15-123 (137)
151 cd00276 C2B_Synaptotagmin C2 d 99.5 8.6E-14 1.9E-18 127.9 9.4 101 488-590 14-124 (134)
152 cd08405 C2B_Synaptotagmin-7 C2 99.5 3.9E-13 8.5E-18 123.8 13.6 98 488-587 15-122 (136)
153 cd04021 C2_E3_ubiquitin_ligase 99.5 4E-13 8.6E-18 121.8 13.3 108 489-598 3-124 (125)
154 cd08408 C2B_Synaptotagmin-14_1 99.5 7E-13 1.5E-17 122.0 14.8 100 487-587 14-124 (138)
155 KOG1013 Synaptic vesicle prote 99.5 1.1E-14 2.3E-19 144.9 2.8 175 488-676 93-295 (362)
156 KOG0696 Serine/threonine prote 99.5 2.7E-14 5.8E-19 146.0 5.7 105 489-594 181-294 (683)
157 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.3E-13 5E-18 124.9 11.1 93 289-404 7-108 (133)
158 cd08410 C2B_Synaptotagmin-17 C 99.5 7.4E-13 1.6E-17 121.7 14.2 100 488-588 14-123 (135)
159 cd08384 C2B_Rabphilin_Doc2 C2 99.5 9.1E-14 2E-18 127.6 8.0 100 487-588 12-121 (133)
160 cd04009 C2B_Munc13-like C2 dom 99.5 3E-13 6.5E-18 124.1 11.1 92 292-406 13-117 (133)
161 cd08692 C2B_Tac2-N C2 domain s 99.5 6.4E-13 1.4E-17 119.9 12.8 88 486-573 12-109 (135)
162 cd08403 C2B_Synaptotagmin-3-5- 99.5 2.1E-13 4.5E-18 125.3 9.8 99 487-587 13-121 (134)
163 cd08410 C2B_Synaptotagmin-17 C 99.5 2.4E-13 5.2E-18 125.0 10.0 93 289-404 8-109 (135)
164 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.6E-13 9.9E-18 123.4 11.6 94 289-405 9-111 (136)
165 cd08690 C2_Freud-1 C2 domain f 99.5 1.4E-12 3.1E-17 121.1 14.8 95 338-454 25-137 (155)
166 cd04037 C2E_Ferlin C2 domain f 99.5 4.7E-13 1E-17 121.1 11.3 88 296-406 1-92 (124)
167 cd08692 C2B_Tac2-N C2 domain s 99.4 2.1E-13 4.5E-18 123.1 8.2 71 592-676 1-77 (135)
168 cd08691 C2_NEDL1-like C2 domai 99.4 1.9E-12 4.1E-17 118.5 14.4 89 296-408 2-107 (137)
169 cd04026 C2_PKC_alpha_gamma C2 99.4 5.7E-13 1.2E-17 121.9 10.8 107 295-447 13-127 (131)
170 cd04048 C2A_Copine C2 domain f 99.4 7.8E-13 1.7E-17 119.1 11.3 96 493-588 5-114 (120)
171 cd08408 C2B_Synaptotagmin-14_1 99.4 3.5E-13 7.7E-18 124.0 9.2 94 289-405 9-112 (138)
172 cd08405 C2B_Synaptotagmin-7 C2 99.4 7.6E-13 1.7E-17 121.9 11.1 94 289-405 9-111 (136)
173 cd08404 C2B_Synaptotagmin-4 C2 99.4 5.9E-13 1.3E-17 122.6 10.3 92 290-404 10-110 (136)
174 KOG1326 Membrane-associated pr 99.4 1.5E-13 3.3E-18 153.3 7.4 331 295-676 206-672 (1105)
175 cd04037 C2E_Ferlin C2 domain f 99.4 9.6E-13 2.1E-17 119.1 11.4 88 489-576 1-93 (124)
176 cd04040 C2D_Tricalbin-like C2 99.4 1.7E-12 3.7E-17 115.9 12.5 88 297-407 1-91 (115)
177 cd08675 C2B_RasGAP C2 domain s 99.4 9E-13 1.9E-17 121.3 11.0 87 297-407 1-108 (137)
178 cd04052 C2B_Tricalbin-like C2 99.4 1.3E-12 2.8E-17 115.9 11.5 94 338-454 13-109 (111)
179 cd08686 C2_ABR C2 domain in th 99.4 2.8E-12 6.1E-17 112.5 13.4 101 490-599 1-117 (118)
180 cd04021 C2_E3_ubiquitin_ligase 99.4 1.9E-12 4.1E-17 117.3 12.5 88 296-408 3-92 (125)
181 cd08403 C2B_Synaptotagmin-3-5- 99.4 1.4E-12 3.1E-17 119.8 11.9 92 290-404 9-109 (134)
182 cd04013 C2_SynGAP_like C2 doma 99.4 3E-12 6.4E-17 117.8 13.3 87 294-407 10-101 (146)
183 cd08686 C2_ABR C2 domain in th 99.4 1.4E-12 3E-17 114.5 10.4 78 297-403 1-91 (118)
184 cd08409 C2B_Synaptotagmin-15 C 99.4 2.9E-12 6.3E-17 118.0 12.1 93 289-405 9-110 (137)
185 cd00275 C2_PLC_like C2 domain 99.4 8.7E-12 1.9E-16 113.5 14.3 109 489-600 3-127 (128)
186 cd08383 C2A_RasGAP C2 domain ( 99.4 5E-12 1.1E-16 113.2 12.2 105 297-452 2-116 (117)
187 PLN03200 cellulose synthase-in 99.4 1.5E-12 3.4E-17 159.3 11.4 113 487-601 1979-2100(2102)
188 PLN03008 Phospholipase D delta 99.4 3.9E-12 8.5E-17 143.1 13.7 96 337-456 76-179 (868)
189 KOG0696 Serine/threonine prote 99.4 3.7E-13 8.1E-18 137.7 4.8 94 294-410 179-280 (683)
190 cd00276 C2B_Synaptotagmin C2 d 99.4 2.1E-12 4.5E-17 118.6 8.8 92 290-404 9-109 (134)
191 cd04048 C2A_Copine C2 domain f 99.3 6.7E-12 1.4E-16 113.0 9.8 86 301-408 6-103 (120)
192 cd04035 C2A_Rabphilin_Doc2 C2 99.3 1.3E-11 2.8E-16 111.6 11.6 96 289-408 9-114 (123)
193 KOG1013 Synaptic vesicle prote 99.3 1.3E-12 2.8E-17 130.2 4.9 208 295-571 93-326 (362)
194 PLN03200 cellulose synthase-in 99.3 1.2E-11 2.6E-16 151.7 11.7 111 294-452 1979-2098(2102)
195 cd00275 C2_PLC_like C2 domain 99.3 8.8E-11 1.9E-15 106.9 13.4 87 296-406 3-100 (128)
196 cd04047 C2B_Copine C2 domain s 99.2 3.5E-11 7.6E-16 106.5 9.9 83 301-407 6-100 (110)
197 PF00168 C2: C2 domain; Inter 99.2 3.8E-11 8.3E-16 100.4 9.4 79 490-568 1-85 (85)
198 KOG1011 Neurotransmitter relea 99.2 1.3E-11 2.8E-16 131.4 7.8 111 487-599 294-422 (1283)
199 cd04047 C2B_Copine C2 domain s 99.2 5.1E-11 1.1E-15 105.4 10.3 85 492-577 4-101 (110)
200 PF00168 C2: C2 domain; Inter 99.2 5E-11 1.1E-15 99.6 9.0 80 297-399 1-85 (85)
201 KOG1011 Neurotransmitter relea 99.2 5.2E-11 1.1E-15 126.8 8.0 111 295-451 295-421 (1283)
202 cd00030 C2 C2 domain. The C2 d 99.1 2.7E-10 5.9E-15 97.6 10.6 97 490-586 1-102 (102)
203 smart00239 C2 Protein kinase C 99.1 6.8E-10 1.5E-14 95.4 10.6 91 490-580 2-98 (101)
204 PF10296 DUF2404: Putative int 99.0 1.1E-09 2.5E-14 92.8 9.8 87 106-193 1-89 (91)
205 cd08374 C2F_Ferlin C2 domain s 99.0 2.8E-09 6.1E-14 96.3 10.3 89 490-578 2-125 (133)
206 PLN02270 phospholipase D alpha 99.0 7.4E-09 1.6E-13 117.1 15.8 119 488-606 8-153 (808)
207 smart00239 C2 Protein kinase C 99.0 4.5E-09 9.8E-14 90.3 10.5 90 296-408 1-95 (101)
208 cd00030 C2 C2 domain. The C2 d 98.9 1.1E-08 2.3E-13 87.6 10.1 87 297-406 1-90 (102)
209 cd08374 C2F_Ferlin C2 domain s 98.9 1.4E-08 3.1E-13 91.8 10.4 91 297-408 2-124 (133)
210 PLN02223 phosphoinositide phos 98.9 3E-08 6.5E-13 108.0 14.4 99 488-589 409-520 (537)
211 cd08689 C2_fungal_Pkc1p C2 dom 98.8 3.1E-08 6.7E-13 84.1 8.4 84 490-576 1-88 (109)
212 cd08689 C2_fungal_Pkc1p C2 dom 98.7 4.8E-08 1.1E-12 82.9 8.1 87 297-407 1-88 (109)
213 PLN02223 phosphoinositide phos 98.7 7.6E-08 1.6E-12 104.9 11.2 94 294-407 408-510 (537)
214 KOG1326 Membrane-associated pr 98.7 5.9E-08 1.3E-12 109.5 10.6 86 296-404 614-703 (1105)
215 PLN02952 phosphoinositide phos 98.7 2.8E-07 6E-12 102.7 14.6 100 487-589 469-582 (599)
216 PLN02230 phosphoinositide phos 98.6 3.1E-07 6.8E-12 102.1 13.8 99 488-589 469-581 (598)
217 PLN02270 phospholipase D alpha 98.6 3.4E-07 7.5E-12 103.8 13.4 133 294-455 7-149 (808)
218 PLN02222 phosphoinositide phos 98.6 7E-07 1.5E-11 99.2 14.8 100 487-589 451-564 (581)
219 KOG1031 Predicted Ca2+-depende 98.6 2E-07 4.3E-12 98.9 9.4 123 295-451 3-133 (1169)
220 KOG0169 Phosphoinositide-speci 98.5 3.7E-07 8.1E-12 101.4 11.1 97 489-588 617-726 (746)
221 KOG1031 Predicted Ca2+-depende 98.5 3.6E-07 7.9E-12 97.0 9.5 112 488-599 3-134 (1169)
222 KOG0169 Phosphoinositide-speci 98.5 3.8E-07 8.1E-12 101.4 9.2 94 296-408 617-718 (746)
223 PLN02228 Phosphoinositide phos 98.5 2E-06 4.3E-11 95.4 14.8 112 487-601 430-561 (567)
224 PLN02230 phosphoinositide phos 98.5 6.4E-07 1.4E-11 99.7 10.8 94 295-407 469-571 (598)
225 PLN02952 phosphoinositide phos 98.5 9.6E-07 2.1E-11 98.5 11.4 97 294-407 469-572 (599)
226 KOG1264 Phospholipase C [Lipid 98.4 1.1E-06 2.5E-11 96.8 11.6 117 488-608 1065-1196(1267)
227 KOG1328 Synaptic vesicle prote 98.4 1.2E-07 2.6E-12 103.3 3.7 73 591-677 933-1012(1103)
228 PLN02222 phosphoinositide phos 98.4 1.7E-06 3.6E-11 96.3 11.6 94 295-407 452-554 (581)
229 KOG1328 Synaptic vesicle prote 98.3 1.8E-07 3.9E-12 101.8 1.5 87 489-575 948-1048(1103)
230 KOG0905 Phosphoinositide 3-kin 98.3 7.9E-07 1.7E-11 101.6 6.4 103 487-589 1523-1636(1639)
231 KOG1264 Phospholipase C [Lipid 98.3 2.9E-06 6.2E-11 93.8 9.6 89 295-407 1065-1162(1267)
232 PLN02228 Phosphoinositide phos 98.2 4.8E-06 1.1E-10 92.4 10.8 96 295-407 431-534 (567)
233 KOG1327 Copine [Signal transdu 98.2 9.8E-06 2.1E-10 87.9 12.7 176 352-576 44-236 (529)
234 PLN02352 phospholipase D epsil 98.2 2.5E-05 5.4E-10 88.8 14.7 113 488-606 10-135 (758)
235 KOG1327 Copine [Signal transdu 98.1 1.8E-05 4E-10 85.8 10.9 135 520-668 41-191 (529)
236 PLN02352 phospholipase D epsil 97.9 6.3E-05 1.4E-09 85.6 12.3 116 294-455 9-131 (758)
237 cd08683 C2_C2cd3 C2 domain fou 97.8 3.7E-05 8.1E-10 67.5 5.9 97 490-586 1-143 (143)
238 KOG0905 Phosphoinositide 3-kin 97.7 3E-05 6.6E-10 89.2 4.8 67 591-673 1512-1583(1639)
239 cd08684 C2A_Tac2-N C2 domain f 97.7 3.9E-05 8.5E-10 62.4 3.3 93 491-585 2-102 (103)
240 PLN02964 phosphatidylserine de 97.6 0.00012 2.6E-09 82.9 6.7 85 294-408 53-140 (644)
241 cd08683 C2_C2cd3 C2 domain fou 97.3 0.00039 8.5E-09 61.2 4.9 103 297-408 1-133 (143)
242 PLN02964 phosphatidylserine de 97.0 0.00075 1.6E-08 76.5 5.7 86 486-578 52-141 (644)
243 PF12416 DUF3668: Cep120 prote 97.0 0.025 5.5E-07 59.5 16.5 175 490-667 2-246 (340)
244 KOG2060 Rab3 effector RIM1 and 97.0 0.0004 8.8E-09 71.5 2.9 104 486-589 267-380 (405)
245 KOG3837 Uncharacterized conser 96.6 0.0014 3.1E-08 68.1 3.5 113 489-601 368-503 (523)
246 PF12416 DUF3668: Cep120 prote 96.4 0.59 1.3E-05 49.4 21.1 231 297-577 2-296 (340)
247 cd08684 C2A_Tac2-N C2 domain f 96.3 0.005 1.1E-07 50.4 3.7 86 298-407 2-94 (103)
248 KOG1265 Phospholipase C [Lipid 95.3 0.025 5.5E-07 64.3 5.7 92 487-588 702-805 (1189)
249 PF10358 NT-C2: N-terminal C2 95.3 0.73 1.6E-05 42.3 14.7 115 488-606 7-140 (143)
250 PF15627 CEP76-C2: CEP76 C2 do 95.3 0.19 4.2E-06 46.6 10.5 93 486-578 7-119 (156)
251 cd08693 C2_PI3K_class_I_beta_d 95.1 0.14 3.1E-06 48.9 9.5 97 489-598 9-133 (173)
252 cd08398 C2_PI3K_class_I_alpha 95.0 0.17 3.8E-06 47.4 9.6 97 489-599 9-120 (158)
253 KOG3837 Uncharacterized conser 94.0 0.053 1.2E-06 56.8 4.0 70 337-406 387-474 (523)
254 KOG3532 Predicted protein kina 93.9 0.14 3.1E-06 56.8 7.1 195 102-311 101-345 (1051)
255 cd08398 C2_PI3K_class_I_alpha 93.6 0.5 1.1E-05 44.4 9.4 85 295-404 8-105 (158)
256 KOG2060 Rab3 effector RIM1 and 93.5 0.071 1.5E-06 55.5 3.9 110 271-407 250-366 (405)
257 cd08380 C2_PI3K_like C2 domain 93.0 0.61 1.3E-05 43.7 9.2 85 489-574 9-107 (156)
258 cd08397 C2_PI3K_class_III C2 d 92.9 0.4 8.7E-06 45.1 7.7 82 507-599 28-121 (159)
259 cd08399 C2_PI3K_class_I_gamma 92.2 0.87 1.9E-05 43.5 9.0 98 489-598 11-135 (178)
260 cd08693 C2_PI3K_class_I_beta_d 91.4 1.3 2.8E-05 42.3 9.2 86 295-404 8-119 (173)
261 cd08687 C2_PKN-like C2 domain 90.9 2.8 6E-05 35.0 9.3 83 509-600 9-92 (98)
262 KOG1452 Predicted Rho GTPase-a 90.6 0.54 1.2E-05 47.7 5.9 111 486-601 49-167 (442)
263 cd04012 C2A_PI3K_class_II C2 d 90.0 1.5 3.2E-05 41.9 8.2 99 489-598 9-132 (171)
264 PF00792 PI3K_C2: Phosphoinosi 89.8 4.2 9.1E-05 37.4 11.0 68 522-601 22-100 (142)
265 PF15625 CC2D2AN-C2: CC2D2A N- 89.5 3.8 8.3E-05 38.9 10.7 68 508-575 36-107 (168)
266 KOG1265 Phospholipase C [Lipid 89.4 0.74 1.6E-05 53.0 6.5 82 295-407 703-796 (1189)
267 cd08397 C2_PI3K_class_III C2 d 89.3 1.5 3.3E-05 41.2 7.7 66 338-404 30-106 (159)
268 cd08380 C2_PI3K_like C2 domain 89.1 2.4 5.2E-05 39.7 8.9 88 295-405 8-107 (156)
269 PF15627 CEP76-C2: CEP76 C2 do 87.3 1.3 2.9E-05 41.1 5.7 62 616-677 6-71 (156)
270 cd08694 C2_Dock-A C2 domains f 86.7 6.9 0.00015 37.9 10.4 53 520-572 53-114 (196)
271 cd08695 C2_Dock-B C2 domains f 86.7 7 0.00015 37.7 10.4 54 520-573 53-113 (189)
272 KOG1452 Predicted Rho GTPase-a 85.4 2.2 4.9E-05 43.4 6.6 75 292-388 48-125 (442)
273 smart00142 PI3K_C2 Phosphoinos 84.6 5.2 0.00011 34.3 7.8 69 490-558 13-92 (100)
274 cd04012 C2A_PI3K_class_II C2 d 83.2 4.7 0.0001 38.4 7.6 89 294-404 7-118 (171)
275 cd08695 C2_Dock-B C2 domains f 83.0 9.5 0.00021 36.8 9.5 54 350-403 54-112 (189)
276 PF14429 DOCK-C2: C2 domain in 81.8 3.6 7.7E-05 39.7 6.3 55 350-404 60-120 (184)
277 PF10358 NT-C2: N-terminal C2 80.9 39 0.00084 30.7 12.7 85 296-407 8-106 (143)
278 PF14429 DOCK-C2: C2 domain in 80.9 7.7 0.00017 37.4 8.3 54 520-573 59-120 (184)
279 PF11618 DUF3250: Protein of u 78.0 18 0.0004 31.5 8.8 65 512-576 2-75 (107)
280 PF00792 PI3K_C2: Phosphoinosi 76.5 10 0.00022 34.8 7.3 53 352-405 23-85 (142)
281 cd08694 C2_Dock-A C2 domains f 75.2 7.2 0.00016 37.7 6.0 54 350-403 54-114 (196)
282 cd08697 C2_Dock-D C2 domains f 74.5 43 0.00094 32.3 11.1 55 350-404 57-123 (185)
283 PTZ00447 apical membrane antig 73.3 57 0.0012 34.1 12.1 107 487-598 57-170 (508)
284 cd08687 C2_PKN-like C2 domain 70.7 55 0.0012 27.6 9.2 61 339-404 10-71 (98)
285 smart00142 PI3K_C2 Phosphoinos 70.3 12 0.00026 32.0 5.8 56 621-676 13-74 (100)
286 cd08679 C2_DOCK180_related C2 61.9 20 0.00044 34.3 6.2 55 350-404 54-115 (178)
287 cd08399 C2_PI3K_class_I_gamma 60.9 18 0.00039 34.7 5.5 56 620-676 11-71 (178)
288 PF11618 DUF3250: Protein of u 60.4 37 0.00081 29.5 6.9 66 341-408 2-76 (107)
289 COG3887 Predicted signaling pr 59.0 21 0.00046 40.1 6.3 46 87-135 77-127 (655)
290 PF15625 CC2D2AN-C2: CC2D2A N- 57.8 52 0.0011 31.2 8.1 66 339-406 38-107 (168)
291 cd08696 C2_Dock-C C2 domains f 56.0 29 0.00064 33.2 6.0 54 350-403 55-117 (179)
292 cd08679 C2_DOCK180_related C2 56.0 34 0.00075 32.7 6.6 54 520-573 53-115 (178)
293 cd08696 C2_Dock-C C2 domains f 54.3 41 0.00088 32.3 6.7 54 520-573 54-118 (179)
294 PF11431 Transport_MerF: Membr 52.7 14 0.00031 26.5 2.4 20 36-55 6-25 (46)
295 KOG2238 Uncharacterized conser 51.9 5.5 0.00012 45.8 0.5 84 100-183 334-419 (795)
296 cd08697 C2_Dock-D C2 domains f 48.4 62 0.0013 31.2 6.9 54 520-573 56-123 (185)
297 KOG1329 Phospholipase D1 [Lipi 40.5 31 0.00066 40.8 4.1 97 508-604 137-243 (887)
298 KOG3543 Ca2+-dependent activat 39.9 2.1E+02 0.0045 32.5 10.0 82 296-401 342-425 (1218)
299 PRK13857 type IV secretion sys 34.5 33 0.00072 29.9 2.4 32 34-65 75-106 (120)
300 PF06219 DUF1005: Protein of u 32.7 6.9E+02 0.015 27.3 12.5 91 509-599 36-165 (460)
301 KOG4269 Rac GTPase-activating 30.6 42 0.00091 39.5 3.1 74 286-387 750-829 (1112)
302 KOG0694 Serine/threonine prote 30.1 13 0.00029 42.4 -0.9 92 507-601 26-121 (694)
303 KOG3543 Ca2+-dependent activat 29.6 1.8E+02 0.0039 33.0 7.5 95 489-587 342-440 (1218)
304 PF10409 PTEN_C2: C2 domain of 29.2 4.1E+02 0.0089 23.6 10.5 86 489-575 5-98 (134)
305 KOG4583 Membrane-associated ER 28.9 46 0.001 34.6 2.8 43 6-54 243-287 (391)
306 KOG2419 Phosphatidylserine dec 28.1 16 0.00036 41.0 -0.6 35 338-373 305-340 (975)
307 PF07069 PRRSV_2b: Porcine rep 28.0 74 0.0016 24.2 3.0 26 44-69 31-58 (73)
308 PF08383 Maf_N: Maf N-terminal 27.4 36 0.00078 22.9 1.1 25 1-25 9-33 (35)
309 PF07162 B9-C2: Ciliary basal 27.0 5.3E+02 0.012 24.2 10.4 78 490-573 4-103 (168)
310 KOG0904 Phosphatidylinositol 3 25.7 2.5E+02 0.0054 33.5 8.0 102 490-594 345-480 (1076)
311 KOG2419 Phosphatidylserine dec 22.9 31 0.00068 38.9 0.4 57 619-676 280-340 (975)
312 PF04995 CcmD: Heme exporter p 22.6 79 0.0017 22.8 2.3 8 76-83 30-37 (46)
313 PF05568 ASFV_J13L: African sw 22.5 92 0.002 28.2 3.1 14 101-114 67-80 (189)
314 KOG0694 Serine/threonine prote 22.3 72 0.0016 36.7 3.0 48 338-386 28-77 (694)
315 PF14980 TIP39: TIP39 peptide 21.8 46 0.001 24.0 0.9 30 79-113 18-47 (51)
316 PF14909 SPATA6: Spermatogenes 21.7 5.9E+02 0.013 23.3 8.2 83 490-575 4-100 (140)
317 COG3086 RseC Positive regulato 21.3 1.5E+02 0.0032 27.3 4.2 28 37-65 86-113 (150)
318 PF11084 DUF2621: Protein of u 21.2 2.7E+02 0.0058 25.0 5.6 11 42-52 5-15 (141)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=6.5e-81 Score=695.03 Aligned_cols=591 Identities=21% Similarity=0.300 Sum_probs=488.1
Q ss_pred HHHHHHhhhcCC-CccchhHHHHHHHHHHHhhccchhhHHHHHHHhhhheehhhhh--hhhHHHHhhhhhhhhcccCCCC
Q 005736 21 VEFWKNLLEEKP-LLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQH--RIHVEELNKKWNQIILKTSPIT 97 (680)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~~ 97 (680)
...+..||.+|| +.++++++++++|++||++||++ -+++++++|+++|+...+| +++|++..+ +........
T Consensus 144 ~y~~~~~y~~w~qs~~i~l~~~v~Swifg~~~fs~~-slffii~~~~~vY~~~~~rv~rnird~v~~----~~~~ek~~n 218 (1227)
T COG5038 144 NYILKKFYGDWYQSVAIVLIGSVASWIFGYLGFSFA-SLFFIILVTMYVYRTCIKRVRRNIRDLVQQ----ELSEEKLEN 218 (1227)
T ss_pred hhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhc
Confidence 445678999999 99999999999999999999997 5667788888888766665 556766643 333333446
Q ss_pred CCcChhhHHHHHHhhcccCchHHHHHHHHHHHHHHHhhcCCCccceEEEeEEeeCCCCCeeeeEEEEECCCCCeEEEEEE
Q 005736 98 PLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLG 177 (680)
Q Consensus 98 ~~E~~eWlN~~l~~~W~~~~~~~~~~~i~~~v~~~l~~~~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~~~~~~~ld~~ 177 (680)
|+||+||||++|+++||++ +|.+|++|.+++|+.|+++.|+||+++++++||||++||||.+||+|++++.|.+.||++
T Consensus 219 d~ESveWLNtfL~KfW~i~-eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 219 DYESVEWLNTFLQKFWPII-EPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred chhHHHHHHHHHHhheecc-ChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 8999999999999999955 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeE--------------EEEEEEecCCcce-eeEEEEEeEEEEEEEEE-------eeeeCCcEEEEEecCCCeE
Q 005736 178 FDWDANDIS--------------ILLLAKLAKPLLG-TAKIVINSLHIKGDLLV-------MPILEGKAVLYSFVSIPDV 235 (680)
Q Consensus 178 ~~~~~~~~~--------------i~l~~~~~~~~~g-~~~v~v~~~~~~g~~Rv-------~P~~~~~~v~~sf~~~P~i 235 (680)
++|+++|++ |.|.++.|++... ++||.|+++.|.|++|+ .||+ ++|++||||.|+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~Pfi--ktV~~~Lle~Pe~ 375 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFI--KTVSFQLLEVPEF 375 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcce--eEEEEEEecCcce
Confidence 999997543 7888898876443 88999999999999999 8999 9999999999999
Q ss_pred EEEEEEcCCCCCccCcccCccHHHHHHHHHHHHHhhccccCcceEEeccccccc-ccCcCeEEEEEEEecCCCCCCC--C
Q 005736 236 RIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR-KKAVGGIVYVRVISASKLSRSS--L 312 (680)
Q Consensus 236 d~~~~~~~~~~~~~~i~~iP~l~~~i~~~i~~~~~~~~v~P~~~~~~l~~~~~~-~~~~~G~L~V~v~~a~~L~~~d--~ 312 (680)
||.+++.+|+.+++||++||||++||+++|+.++++||++|++++++|+.--.. ...++|+|.|+|.+|++|+..+ +
T Consensus 376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i 455 (1227)
T COG5038 376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTI 455 (1227)
T ss_pred eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccc
Confidence 999999888888999999999999999999999999999999988887431111 3456799999999999999988 3
Q ss_pred CCCCcccccccCCCCccccccCCCCCCeEEEEEEc-ceeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCC
Q 005736 313 RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHV 390 (680)
Q Consensus 313 ~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~ 390 (680)
.+ ..|||+++.+. ....+|++ +++.||+|||+||++++..++.|.++|||++.. .
T Consensus 456 ~~----------------------~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~-~ 512 (1227)
T COG5038 456 NG----------------------TVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSF-K 512 (1227)
T ss_pred cC----------------------CCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEecccc-C
Confidence 33 25999999976 45679999 799999999999999999999999999998886 7
Q ss_pred CCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEEeeeecCCCCCCCCCCcC
Q 005736 391 KYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS 470 (680)
Q Consensus 391 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~ 470 (680)
+|+.+|++.++|..|.+++... ++. ..+....++.|++.+++.+-+... +...
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~~-----------------ne~--~e~~~~~k~vGrL~yDl~ffp~~e-~k~~------- 565 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVKK-----------------NEL--YEFLRNTKNVGRLTYDLRFFPVIE-DKKE------- 565 (1227)
T ss_pred CcceeeeEEechHHhhhccccc-----------------cce--eeeeccCccceEEEEeeeeecccC-Cccc-------
Confidence 9999999999999998765310 000 111223455799999886543211 1110
Q ss_pred CCCCcccccc-cccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CEEEeeecc-CCCCCeeeeEEEEEeeCC-c
Q 005736 471 GSQQSLSGSS-NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGG-G 546 (680)
Q Consensus 471 ~~~~~~~~~~-~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~T~~~-~t~nP~wne~f~f~v~~~-~ 546 (680)
..++. +......|++.+++.++++|.... ......+++++++ +.++.|+.. .+.+|.||+++...+.+. .
T Consensus 566 -----~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~n 639 (1227)
T COG5038 566 -----LKGSVEPLEDSNTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKN 639 (1227)
T ss_pred -----cccccCCcccCCcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcc
Confidence 11111 111223469999999999996543 2233344888885 567777888 999999999999999885 7
Q ss_pred eEEEEEEEEecCCCCceeEEEEEEcccccC-CCeeeEEEeCCCCCCeEEEEEEEEEEecCCCCCCCcc-CCCCCceEEEE
Q 005736 547 ECLMVKCYNEEIFGDENMGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQN-IGSGNGWIELV 624 (680)
Q Consensus 547 ~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G~i~l~l~~~~~~~~~~~~~~~-~~~~~~~L~V~ 624 (680)
..+.+.++|.. ..+.||+...+|.++.. ......||++.. .+|+|.++..|.|+....+..... +..+.|.++|.
T Consensus 640 s~~~~~~~d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~~-~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~ 716 (1227)
T COG5038 640 SSIKVVTFDVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLRN-PKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVS 716 (1227)
T ss_pred eeEEEEecccc--cCceeccccccchHhhhccccceEEEEcCC-CcceEEEEeccceeeccccccceeeecCccceEEEE
Confidence 78999999876 36789999999998774 556679999984 689999999999988766544433 67889999999
Q ss_pred EEEeecCccccCCCCCCCEEEEEECC-eEEeeeeeecCCCCcccceeEEEecCCC
Q 005736 625 IVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKLTVACLSGHIQNSKSSMASNLR 678 (680)
Q Consensus 625 I~~a~~L~~~d~~g~~DPyV~v~lg~-~~~kT~~~k~tlnP~wnE~f~f~V~n~~ 678 (680)
|..|.||.+....|++|||++|.+++ .++||-....++||+|||..+.+|...-
T Consensus 717 v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~ 771 (1227)
T COG5038 717 VRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKN 771 (1227)
T ss_pred eehhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCc
Confidence 99999999888999999999999988 5889999999999999999999987653
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.6e-26 Score=243.75 Aligned_cols=174 Identities=29% Similarity=0.405 Sum_probs=157.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF- 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~- 559 (680)
..|.|+|++|++|+..+..|.+||||++++ .+.+.+|++. +|+||.|||+|.|.+.. ....|.+.|||.|.+
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 389999999999999997788999999999 3478999999 99999999999999764 377999999999999
Q ss_pred CCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCcc
Q 005736 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA 633 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~ 633 (680)
++++||++.++|..+........|.+|... ..|+|.++++|. +..|.|+|.|++|+||+.
T Consensus 247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~ 312 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKS 312 (421)
T ss_pred cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCc
Confidence 999999999999998876667889999763 237999999999 788999999999999999
Q ss_pred ccCCCCCCCEEEEEEC--C---eEEeeeeeecCCCCcccceeEEEec
Q 005736 634 ADLRGTSDPYVKVQYG--D---LKKRTKLTVACLSGHIQNSKSSMAS 675 (680)
Q Consensus 634 ~d~~g~~DPyV~v~lg--~---~~~kT~~~k~tlnP~wnE~f~f~V~ 675 (680)
++..+.+||||++++- . +++||.++++++||+|||+|.|.|.
T Consensus 313 ~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp 359 (421)
T KOG1028|consen 313 MDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVP 359 (421)
T ss_pred ccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCC
Confidence 9999999999999993 2 5889999999999999999999876
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=225.23 Aligned_cols=206 Identities=21% Similarity=0.317 Sum_probs=168.7
Q ss_pred cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccceeEE
Q 005736 293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSMFN 368 (680)
Q Consensus 293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~f~ 368 (680)
....|.|+|.+|++|+..|..|. +||||++.+. ..+++|++ ++++||+|||+|.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~----------------------sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~ 222 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGT----------------------SDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFR 222 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCC----------------------CCCeeEEEEcCCCCCcceeeeeecCcCCccccceE
Confidence 34899999999999999994443 3999999997 36789999 7999999999999
Q ss_pred EEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC---
Q 005736 369 MVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV--- 442 (680)
Q Consensus 369 ~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~--- 442 (680)
|.|... ...|.|.|||+|++ .++++||++.++|..+..... ...|.++...
T Consensus 223 f~v~~~~l~~~~L~l~V~~~drf-sr~~~iGev~~~l~~~~~~~~----------------------~~~w~~l~~~~~~ 279 (421)
T KOG1028|consen 223 FEVPYEELSNRVLHLSVYDFDRF-SRHDFIGEVILPLGEVDLLST----------------------TLFWKDLQPSSTD 279 (421)
T ss_pred eecCHHHhccCEEEEEEEecCCc-ccccEEEEEEecCcccccccc----------------------ceeeeccccccCC
Confidence 996542 56899999999997 699999999999988864432 2334444321
Q ss_pred ---ceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--
Q 005736 443 ---NSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-- 517 (680)
Q Consensus 443 ---~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-- 517 (680)
..|++.+.+.+.+ ..|.|+|.|++|++|..++..+.+||||++++
T Consensus 280 ~~~~~gel~~sL~Y~p------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~ 329 (421)
T KOG1028|consen 280 SEELAGELLLSLCYLP------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLD 329 (421)
T ss_pred cccccceEEEEEEeec------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEec
Confidence 1268888775422 24599999999999999999999999999999
Q ss_pred CC---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-CCceeEEEEEEccc
Q 005736 518 GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEG 573 (680)
Q Consensus 518 ~~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-~d~~iG~~~i~L~~ 573 (680)
+. .+.+|.++ ++.||+|||+|.|.+... ...|.|+|||++.. ++++||.|.+....
T Consensus 330 ~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 330 GDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 22 57789999 999999999999988752 56899999999998 77899999988774
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=5.6e-20 Score=164.36 Aligned_cols=112 Identities=23% Similarity=0.438 Sum_probs=100.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 564 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i 564 (680)
|.|.|+|++|++++..+ .+.+||||++.+++++++|+++ + +.||.|||+|.|.+.+....|.|+|||++.+ +|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 58999999999988776 6899999999999999999998 5 8999999999999987667899999999998 89999
Q ss_pred EEEEEEcc-cccCCCeeeEEEeCCC----CCCeEEEEEEEE
Q 005736 565 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA 600 (680)
Q Consensus 565 G~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~i~l~l~~ 600 (680)
|++.++|. .+..+...+.|++|.+ ...|+|+|+++|
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999996 5667777899999987 446999999986
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.83 E-value=2.3e-18 Score=194.78 Aligned_cols=380 Identities=13% Similarity=0.126 Sum_probs=246.6
Q ss_pred cCccHHHHHHHHHHHHHhhccccCcc---eEEecc----cccc--------cccCcCeEEEEEEEecCCCCCCCCCCCCc
Q 005736 253 ELPGVSNWLARLINETLVKTLVEPRR---RCYSLP----AVDL--------RKKAVGGIVYVRVISASKLSRSSLRGSPS 317 (680)
Q Consensus 253 ~iP~l~~~i~~~i~~~~~~~~v~P~~---~~~~l~----~~~~--------~~~~~~G~L~V~v~~a~~L~~~d~~g~~~ 317 (680)
.++...+-+.+.|.......++.|.+ -.+.+. +.++ -...++|+++|.|..|.+|......+.
T Consensus 654 ~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~-- 731 (1227)
T COG5038 654 VIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK-- 731 (1227)
T ss_pred eeccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcc--
Confidence 34667777889999999999998887 112221 2222 134568999999999999986555444
Q ss_pred ccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCcee
Q 005736 318 RRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYL 395 (680)
Q Consensus 318 ~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~l 395 (680)
+|||+.+.+++ ..++|-. ..+.||.|||..|..+.+..+.+.++++|++.. ++|..+
T Consensus 732 --------------------~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~s-gddr~l 790 (1227)
T COG5038 732 --------------------SDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEES-GDDRNL 790 (1227)
T ss_pred --------------------cccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhc-ccccee
Confidence 49999999986 4677776 689999999999999999999999999999987 699999
Q ss_pred EEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeecc-CCCceeeEEEEEEEeeeecCCCC------------
Q 005736 396 TSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPF-EGVNSGELTVRLVLKEWQFSDGS------------ 462 (680)
Q Consensus 396 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~~~~G~l~~~l~l~~~~~~~~~------------ 462 (680)
|++.++++++..... ++.. .... .|...-..+.+ ....+|.+.+.+.+.+....-..
T Consensus 791 g~~~i~vsn~~~k~~-------~s~~-~~~i--~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e 860 (1227)
T COG5038 791 GEVNINVSNVSKKDE-------DSAL-METI--DGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSE 860 (1227)
T ss_pred ceeeeeeeeeeecCC-------Ccce-EEee--cCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhH
Confidence 999999998864211 1100 0000 01000001111 12224666655544332110000
Q ss_pred --------C--CC-C----CCcCCCCCc--ccc------------cccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEE
Q 005736 463 --------H--SL-N----NFHSGSQQS--LSG------------SSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYV 513 (680)
Q Consensus 463 --------~--~~-~----~~~~~~~~~--~~~------------~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv 513 (680)
+ .+ . +.+....+. +.. .........|.+.+.++.++-.. +.-|+
T Consensus 861 ~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~-------~~~~l 933 (1227)
T COG5038 861 KRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPD-------PGQYL 933 (1227)
T ss_pred HHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCC-------cceEE
Confidence 0 00 0 000000000 000 00111223458888888876332 23456
Q ss_pred EEEECC--EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCCCCceeEEEEEEcccccC-CCeeeEEEeCCC
Q 005736 514 KLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSARVNLEGLVE-GSVRDIWVPLEK 588 (680)
Q Consensus 514 ~v~l~~--~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~-~~~~~~w~~L~~ 588 (680)
.+.++. ...-+... .+..+.|.+.-...+.+ .-...+|.|.+.....|+.+++.+++-.++.. .-....|+.+.+
T Consensus 934 ~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g 1013 (1227)
T COG5038 934 QIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPG 1013 (1227)
T ss_pred EEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCC
Confidence 666643 33333333 45556665554444443 34567788877533368899999888766664 335567888876
Q ss_pred CCCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEECCe-EEeeeeeecCCCCccc
Q 005736 589 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKLTVACLSGHIQ 667 (680)
Q Consensus 589 ~~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg~~-~~kT~~~k~tlnP~wn 667 (680)
. ..+.+++.|.|+ +..+.+...-...|.|.|.+..|.||+..|.+|.+||||++.++++ .+||+++++|+||+||
T Consensus 1014 ~--~~~~v~~~~tPv--~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwN 1089 (1227)
T COG5038 1014 S--AKVLVQVSYTPV--PVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWN 1089 (1227)
T ss_pred C--ceEEEEEEEeec--ccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCcc
Confidence 3 678888889877 2222233334567999999999999999999999999999999886 8999999999999999
Q ss_pred ceeEEEecC
Q 005736 668 NSKSSMASN 676 (680)
Q Consensus 668 E~f~f~V~n 676 (680)
|++..+|.|
T Consensus 1090 Ee~~i~v~~ 1098 (1227)
T COG5038 1090 EEFTIEVLN 1098 (1227)
T ss_pred ccceEeeec
Confidence 999999875
No 6
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.82 E-value=7.8e-20 Score=196.21 Aligned_cols=232 Identities=18% Similarity=0.276 Sum_probs=183.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-ceeeeecc-CCCCCCccceeEEEEEe
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
..|.|+|.+|+||++.+..|.. ||||.|.++ +...||.+ .+++.|-|.|.|+|.+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP 62 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIP 62 (800)
T ss_pred cceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecC
Confidence 5689999999999999877764 999999998 45778887 89999999999999999
Q ss_pred cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc-----eeeE
Q 005736 373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN-----SGEL 447 (680)
Q Consensus 373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-----~G~l 447 (680)
.....|.|-|||.| . ..|+.||.+.|.-.+|...+ -.+.|+.|...+ +|++
T Consensus 63 ~~F~~l~fYv~D~d-~-~~D~~IGKvai~re~l~~~~----------------------~~d~W~~L~~VD~dsEVQG~v 118 (800)
T KOG2059|consen 63 RTFRYLSFYVWDRD-L-KRDDIIGKVAIKREDLHMYP----------------------GKDTWFSLQPVDPDSEVQGKV 118 (800)
T ss_pred cceeeEEEEEeccc-c-ccccccceeeeeHHHHhhCC----------------------CCccceeccccCCChhhceeE
Confidence 88899999999999 4 69999999999888875322 235677775443 6999
Q ss_pred EEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----EEEe
Q 005736 448 TVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQR 523 (680)
Q Consensus 448 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~ 523 (680)
++++.+.. +. +..-+...+++++++.+.. ++.+|||+.+...+ +..+
T Consensus 119 ~l~l~~~e-----~~-----------------------~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~ 169 (800)
T KOG2059|consen 119 HLELALTE-----AI-----------------------QSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKK 169 (800)
T ss_pred EEEEEecc-----cc-----------------------CCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccc
Confidence 98886532 10 0113556666666776665 35599999999954 3469
Q ss_pred eecc-CCCCCeeeeEEEEEeeCC----------------ceEEEEEEEEecCC--CCceeEEEEEEcccccCCCeeeEEE
Q 005736 524 TRTA-HSPNHVWNQKFELDEIGG----------------GECLMVKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWV 584 (680)
Q Consensus 524 T~~~-~t~nP~wne~f~f~v~~~----------------~~~L~i~V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~ 584 (680)
|+++ +|.+|.|+|.|+|.+... ...|++++|++... .+.|+|++.+++..+........||
T Consensus 170 T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~ 249 (800)
T KOG2059|consen 170 TKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWY 249 (800)
T ss_pred cceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceE
Confidence 9999 999999999999997633 23688999995544 7999999999999988677778999
Q ss_pred eCCCCC----------CeEEEEEEEEE
Q 005736 585 PLEKVN----------TGELRLQIEAT 601 (680)
Q Consensus 585 ~L~~~~----------~G~i~l~l~~~ 601 (680)
.|.... -|.+++.+.|.
T Consensus 250 ~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 250 YLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EEecCCCcccCCCCCCccceeeeEEee
Confidence 997532 37888998887
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.80 E-value=7.1e-19 Score=157.24 Aligned_cols=113 Identities=12% Similarity=0.241 Sum_probs=94.3
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVL 371 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v 371 (680)
+|.|+|+|++|++++..+ .|.+ ||||++.++++..+|++ . ++.||+|||+|.|.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~s----------------------DPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v 57 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRM----------------------DPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTL 57 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCC----------------------CceEEEEECCEEEEeEEccCCCCCCccCeEEEEEe
Confidence 499999999999988766 4543 99999999999999998 4 489999999999999
Q ss_pred ecCCCeEEEEEEEeCCCCCCCceeEEEEEecc-cccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC----Cceee
Q 005736 372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMK-YVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG----VNSGE 446 (680)
Q Consensus 372 ~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~----~~~G~ 446 (680)
.+..+.|.|+|||+|.. ++|++||++.+++. .+.. |+..+.|++|.+ ...|+
T Consensus 58 ~~~~~~l~~~V~d~d~~-~~dd~iG~~~i~l~~~~~~----------------------g~~~~~W~~L~~~~~~~~~g~ 114 (121)
T cd04016 58 PEGVDSIYIEIFDERAF-TMDERIAWTHITIPESVFN----------------------GETLDDWYSLSGKQGEDKEGM 114 (121)
T ss_pred cCCCcEEEEEEEeCCCC-cCCceEEEEEEECchhccC----------------------CCCccccEeCcCccCCCCceE
Confidence 87667899999999987 58999999999996 4532 334577888876 34699
Q ss_pred EEEEEE
Q 005736 447 LTVRLV 452 (680)
Q Consensus 447 l~~~l~ 452 (680)
|++++.
T Consensus 115 i~l~l~ 120 (121)
T cd04016 115 INLVFS 120 (121)
T ss_pred EEEEEe
Confidence 998874
No 8
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.79 E-value=3.4e-19 Score=191.38 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=151.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 566 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~ 566 (680)
.|.|.|.+|+||+..+..|..||||.|.++. .+.||.++ +++.|.|.|.|+|.++..-..|.|-|||.|..+|+.||.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK 85 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK 85 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence 5999999999999999999999999999965 78999999 999999999999999988899999999999339999999
Q ss_pred EEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCC
Q 005736 567 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD 641 (680)
Q Consensus 567 ~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~D 641 (680)
+.|.=.++...+..+.|+.|+..+ +|+|++++.+.+... ...++..++.++++.+.+.+ .+|
T Consensus 86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~------------~~~~~c~~L~~r~~~P~~~~-~~d 152 (800)
T KOG2059|consen 86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ------------SSGLVCHVLKTRQGLPIING-QCD 152 (800)
T ss_pred eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC------------CCcchhhhhhhcccCceeCC-CCC
Confidence 999998888777888999998643 799999998874332 23456666677787776554 599
Q ss_pred CEEEEEECC----eEEeeeeeecCCCCcccceeEEEecCC
Q 005736 642 PYVKVQYGD----LKKRTKLTVACLSGHIQNSKSSMASNL 677 (680)
Q Consensus 642 PyV~v~lg~----~~~kT~~~k~tlnP~wnE~f~f~V~n~ 677 (680)
||++|...+ +..+|+++++|.||.|||.|+|.+.-.
T Consensus 153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~ 192 (800)
T KOG2059|consen 153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTRE 192 (800)
T ss_pred cceEEeecccchhhccccceeeeccCcchhhheeeeeccc
Confidence 999999965 356999999999999999999998753
No 9
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.5e-18 Score=157.83 Aligned_cols=110 Identities=28% Similarity=0.510 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC------CceEEEEEEEEecCC-CC
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD 561 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~------~~~~L~i~V~d~~~~-~d 561 (680)
++|+|++|+||+..+..+.+||||++.++++.++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.. +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999998888999999999999999999999 99999999999999876 367899999999987 79
Q ss_pred ceeEEEEEEccccc--CCCeeeEEEeCCCC------CCeEEEEEEE
Q 005736 562 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQIE 599 (680)
Q Consensus 562 ~~iG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~i~l~l~ 599 (680)
++||++.++|+++. .+.....||+|.+. ..|+|+++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 45667899999752 3599998863
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=4.4e-18 Score=153.15 Aligned_cols=107 Identities=28% Similarity=0.421 Sum_probs=97.1
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC------
Q 005736 490 INVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------ 559 (680)
Q Consensus 490 L~V~I~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~------ 559 (680)
|.|+|++|+| |..++..|.+||||++.++++..||+++ ++.||.|||+|.|.+.+....|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 8888889999999999999999999999 99999999999999988777999999999875
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEE
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRL 596 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l 596 (680)
+|++||++.++|+++..+.....||+|... ..|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 799999999999999988888999999843 3466654
No 11
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=9.2e-18 Score=150.29 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=103.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG 565 (680)
+++|+|++|+||+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 378999999999999888999999999999999999999 999999999999998875 78999999999987 899999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 601 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~ 601 (680)
++.++|.++..+.....|++|++. .|+|++.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 999999999888889999999974 69999998774
No 12
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=1.2e-17 Score=150.76 Aligned_cols=113 Identities=32% Similarity=0.537 Sum_probs=103.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
+|+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.||.|||+|.|.+.+..+.|.|+|||++.. ++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3899999999999988889999999999976 78899999 99999999999999887678899999999988 899999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCCC----CeEEEEEEEEE
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEAT 601 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~~ 601 (680)
.+.++|+++..+...+.|++|.+.. .|+|++.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 9999999999888889999997543 59999999875
No 13
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=1.1e-17 Score=151.07 Aligned_cols=113 Identities=30% Similarity=0.552 Sum_probs=102.5
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC
Q 005736 488 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~ 559 (680)
|.|+|+|++|+||+..+. .+.+||||+++++++.++|+++ ++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 479999999999988764 3689999999999999999999 99999999999999875 477999999999877
Q ss_pred CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEE
Q 005736 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 600 (680)
++++||.+.++|.++..+...+.||+|.+..+|+|+++++|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 88999999999999988777889999998888999999876
No 14
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.75 E-value=6.9e-18 Score=151.60 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=100.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCcee
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 564 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~i 564 (680)
|.|+|+|++|++|+..+..+.+||||++.+++...+|+++ + +.||.|||.|.|.+..+ .+.|.|+|||++...|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 4799999999999998888999999999999999999987 4 78999999999999864 6789999999987678999
Q ss_pred EEEEEEcccccCCCeeeEEEeCCCC--CCeEEEEEEEE
Q 005736 565 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA 600 (680)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~~~--~~G~i~l~l~~ 600 (680)
|++.+++.++..+.....|++|... ..|+|+++++|
T Consensus 81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999998776677899999864 36999999875
No 15
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=2.6e-17 Score=151.09 Aligned_cols=114 Identities=23% Similarity=0.474 Sum_probs=103.0
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCce
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 563 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~ 563 (680)
.|.|+|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+.+. .+.|.|+|||++.. +|++
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~ 93 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF 93 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence 46999999999999998888999999999999999999999 999999999999999764 67899999999987 8999
Q ss_pred eEEEEEEcccccC-----CCeeeEEEeCCCCCCeEEEEEEEE
Q 005736 564 MGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA 600 (680)
Q Consensus 564 iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~l~l~~ 600 (680)
||++.++|.++.. ......|..|.+...|+|++++.+
T Consensus 94 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 94 LGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred eEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999885 334568899988888999999865
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.74 E-value=2.1e-17 Score=150.65 Aligned_cols=113 Identities=31% Similarity=0.521 Sum_probs=101.5
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCc
Q 005736 488 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE 562 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~ 562 (680)
|.|+|+|++|++|+..+. .+.+||||++.++++.++|+++ ++.||.|||+|.|.+.+ ....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 589999999999998887 7899999999999999999999 99999999999999987 578999999999988 899
Q ss_pred eeEEEEEEccccc---CCCeeeEEEeCCCC-------CCeEEEEEEEE
Q 005736 563 NMGSARVNLEGLV---EGSVRDIWVPLEKV-------NTGELRLQIEA 600 (680)
Q Consensus 563 ~iG~~~i~L~~l~---~~~~~~~w~~L~~~-------~~G~i~l~l~~ 600 (680)
+||++.++|.++. .......||+|.+. .+|+|++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999987 33456899999865 37999999876
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=3.3e-17 Score=152.75 Aligned_cols=112 Identities=28% Similarity=0.447 Sum_probs=99.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG 565 (680)
|+|+|++|++|++.+..|.+||||++.++++..+|++. + +.||.|||.|.|.+.++ .+.|.|+|||++.. +|++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999989999999999999999999999 6 69999999999999764 56899999999987 899999
Q ss_pred EEEEEcccccCC----CeeeEEEeCCCCC-----------CeEEEEEEEEE
Q 005736 566 SARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT 601 (680)
Q Consensus 566 ~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~l~~~ 601 (680)
++.++|+++..+ ....+||+|.+.. .|+|+|++++.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 999999998642 4568999998643 39999999876
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.74 E-value=2.6e-17 Score=149.64 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=92.0
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec--
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE-- 373 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~-- 373 (680)
++|+|++|++|+..+..|.+ ||||++.++++.++|++ ++++||+|||+|.|.+..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~----------------------dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~ 58 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTN----------------------DAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLL 58 (126)
T ss_pred CEEEEEECcCCcCCCCCcCC----------------------CceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcc
Confidence 58999999999998866543 99999999999999998 789999999999999877
Q ss_pred ----CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC------c
Q 005736 374 ----ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV------N 443 (680)
Q Consensus 374 ----~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~------~ 443 (680)
....|.|.|||++.. ++|++||++.++|+++.... +...+.|++|.+. .
T Consensus 59 ~~~~~~~~l~~~v~d~~~~-~~d~~iG~~~i~l~~l~~~~--------------------~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 59 SGNGNRATLQLTVMHRNLL-GLDKFLGQVSIPLNDLDEDK--------------------GRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred cCCCcCCEEEEEEEEcccc-CCCceeEEEEEEHHHhhccC--------------------CCcccEEEECcCCCCCCccc
Confidence 256799999999976 58999999999999986221 2245678888643 2
Q ss_pred eeeEEEEE
Q 005736 444 SGELTVRL 451 (680)
Q Consensus 444 ~G~l~~~l 451 (680)
.|+|++++
T Consensus 118 ~Gei~l~~ 125 (126)
T cd08682 118 RGEIEVDI 125 (126)
T ss_pred cceEEEEe
Confidence 58888765
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=3e-17 Score=149.39 Aligned_cols=112 Identities=33% Similarity=0.479 Sum_probs=99.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC----ceEEEEEEEEecCC--CCc
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GDE 562 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~--~d~ 562 (680)
|+|+|++|++|...+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+.++ ...|.|+|||++.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 89999999999998888999999999999999999999 999999999999998753 35899999998876 689
Q ss_pred eeEEEEEEccccc-CCCeeeEEEeCCCC-----CCeEEEEEEEEE
Q 005736 563 NMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT 601 (680)
Q Consensus 563 ~iG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~i~l~l~~~ 601 (680)
+||++.++++++. .+.....||+|+.. .+|+|+|++.+.
T Consensus 82 ~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999987 56677899999864 379999998653
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.73 E-value=3.7e-17 Score=147.18 Aligned_cols=110 Identities=23% Similarity=0.393 Sum_probs=97.5
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 490 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 490 L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|.|+|++|+||+..+ ..+.+||||++.+++ ..++|+++ +|.||.|||+|.|.+.+....|.|.|||++.. ++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999998864 457899999999976 47899999 99999999999999987678999999999988 899999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEE
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIE 599 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~ 599 (680)
.+.++++++..+...+.||+|+.. ..|+|++++.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999999877778999999863 2699999875
No 21
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=5.2e-17 Score=146.07 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=100.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCcee
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 564 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~i 564 (680)
|.|+|++|++|+..+..+.+||||+++++ ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 78999999999988888899999999994 467899999 999999999999998764 5679999999987788999
Q ss_pred EEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEE
Q 005736 565 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600 (680)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 600 (680)
|++.+++.++..+.....|++|.+.++|++++.+..
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999998888999999998888999988754
No 22
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.73 E-value=7.8e-17 Score=147.97 Aligned_cols=122 Identities=15% Similarity=0.307 Sum_probs=100.9
Q ss_pred CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEE
Q 005736 292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMV 370 (680)
Q Consensus 292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~ 370 (680)
...|.|+|+|++|++|++.|..|. +||||++.++.+..+|++ +++.||.|||+|.|.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~----------------------~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~ 69 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGK----------------------SDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF 69 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCC----------------------cCcEEEEEECCEeeeccccCCCCCCccCceEEEE
Confidence 345999999999999999886664 399999999999999998 799999999999999
Q ss_pred EecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEE
Q 005736 371 LHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTV 449 (680)
Q Consensus 371 v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~ 449 (680)
+.+. .+.|.|+|||+|.. .+|++||++.+++.++...... .......|.++..++.|++++
T Consensus 70 v~~~~~~~l~i~V~D~d~~-~~d~~lG~~~i~l~~l~~~~~~-----------------~~~~~~~~~~~~~~~~g~i~l 131 (136)
T cd08375 70 VKDLEQDVLCITVFDRDFF-SPDDFLGRTEIRVADILKETKE-----------------SKGPITKRLLLHEVPTGEVVV 131 (136)
T ss_pred ecCccCCEEEEEEEECCCC-CCCCeeEEEEEEHHHhcccccc-----------------CCCcEEEEeccccccceeEEE
Confidence 9875 56899999999976 5899999999999998753210 011334567788888899999
Q ss_pred EEEE
Q 005736 450 RLVL 453 (680)
Q Consensus 450 ~l~l 453 (680)
++.+
T Consensus 132 ~~~~ 135 (136)
T cd08375 132 KLDL 135 (136)
T ss_pred EEEe
Confidence 8864
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=5e-17 Score=146.31 Aligned_cols=91 Identities=18% Similarity=0.336 Sum_probs=80.4
Q ss_pred EEEEEEEecCC---CCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736 296 IVYVRVISASK---LSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 296 ~L~V~v~~a~~---L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
.|.|+|++|++ |+..|..|.+ ||||+++++.+..+|++ ++++||+|||+|+|.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~s----------------------DPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v 58 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGST----------------------DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPV 58 (126)
T ss_pred CeEEEEEEeECCccccccccCCCC----------------------CeeEEEEECCEEeEcCcccCCCCCcceeEEEEEe
Confidence 38999999999 7888876653 99999999999999999 7899999999999999
Q ss_pred ecCCCeEEEEEEEeCCCC-----CCCceeEEEEEecccccCC
Q 005736 372 HEETGTVRFNLYECIPGH-----VKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 372 ~~~~~~l~l~v~d~d~~~-----~~d~~lG~~~i~l~~l~~~ 408 (680)
.+....|.|+|||+|..+ .+|++||++.++|..+..+
T Consensus 59 ~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~ 100 (126)
T cd08379 59 YDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDD 100 (126)
T ss_pred cCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCC
Confidence 887778999999988741 3899999999999998643
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.72 E-value=7.8e-17 Score=145.26 Aligned_cols=98 Identities=23% Similarity=0.343 Sum_probs=88.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEe-eC---CceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDE-IG---GGECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v-~~---~~~~L~i~V~d~~ 557 (680)
+.|.|+|++|+||+..+ .+.+||||++++. ..+.+|+++ ++.||.|||+|.|.+ .. ....|.|+|||++
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 48999999999999999 8999999999994 357899999 999999999999997 32 3678999999999
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 586 (680)
.. ++++||++.++|.++..++....||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 88 899999999999999887778899987
No 25
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.72 E-value=2e-17 Score=150.75 Aligned_cols=91 Identities=18% Similarity=0.364 Sum_probs=85.3
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEe
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
.|.|+|+|.+|.+|..+|..+++ ||||++++|+++.+|++ ++++||+|||.|.|.+.
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~ 62 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVK 62 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEec
Confidence 49999999999999999986653 99999999999999998 89999999999999999
Q ss_pred cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+....|.+.|||+|.+ .+||+||.++|+|+.+..
T Consensus 63 d~~~~lkv~VyD~D~f-s~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 63 DPNTPLKVTVYDKDTF-SSDDFMGEATIPLKPLLE 96 (168)
T ss_pred CCCceEEEEEEeCCCC-CcccccceeeeccHHHHH
Confidence 9999999999999997 699999999999998863
No 26
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.72 E-value=8.1e-17 Score=145.95 Aligned_cols=100 Identities=22% Similarity=0.390 Sum_probs=88.7
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~ 557 (680)
+.|.|+|++|+||++++.. +.+||||++++. ..+++|+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 3899999999999998875 889999999992 246799999 99999999999999874 3568999999999
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
.. ++++||++.++|.++..+.....||+|+
T Consensus 95 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 95 SLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 88 8999999999999998777778999984
No 27
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1.7e-16 Score=146.18 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=89.4
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEE-EecCC
Q 005736 488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~-d~~~~ 559 (680)
+.|.|+|++|+||.+.+ ..+.+||||++++ ++ .+.||+++ +++||+|||+|.|.+......|.|+|| |++..
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~ 108 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRM 108 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCC
Confidence 48999999999998764 5678999999999 32 47899999 999999999999999866889999999 56666
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
++++||++.|+|+++..+.....||+|.+.
T Consensus 109 ~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 109 DKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 889999999999998777777899999864
No 28
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=1.3e-16 Score=144.98 Aligned_cols=112 Identities=17% Similarity=0.308 Sum_probs=99.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|.|+|++|+||+. ..+.+||||+++++ .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 56899999999996 467899999 99999999999999976677899999999988 799999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEEEEe
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRV 603 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~~ 603 (680)
++.+++.++........|++|.+. ..|+|.+.+.|.+.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999987777899999854 37999999999843
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=1.2e-16 Score=140.66 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=84.1
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 558 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~ 558 (680)
.+.|.|+|++|+||+ . .+.+||||++++.. .+++|+++ +|+||+|||+|.|.+.. +..+|.|+|||+|.
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence 458999999999998 3 36699999999932 57799999 99999999999999875 36789999999999
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 586 (680)
+ ++++||++.++++++..+...++|..|
T Consensus 90 fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 90 FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 999999999999998766666788654
No 30
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.71 E-value=2.2e-16 Score=148.80 Aligned_cols=113 Identities=24% Similarity=0.441 Sum_probs=99.6
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECC-EEEeeecc-CCCCCeee
Q 005736 488 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWN 535 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wn 535 (680)
|.|.|+|++|++|+.+| ..|.+||||+|.+++ +..+|+++ ++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 58999999999999877 246689999999986 45799999 99999999
Q ss_pred eEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEE
Q 005736 536 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEA 600 (680)
Q Consensus 536 e~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~ 600 (680)
|+|.|.+....+.|.|.|||++..++++||.+.++++++..+...+.|++|.+. ..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999887777899999999877778999999999999888888999999753 25899999987
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=1.2e-16 Score=143.91 Aligned_cols=107 Identities=25% Similarity=0.422 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCCCCceeEEE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSA 567 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~~d~~iG~~ 567 (680)
|.|+|++|+||+.. .+||||++.++++..+|+++ ++.||.|||+|.|.+.. ....|.|+|||++..++++||++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeE
Confidence 88999999999876 68999999999999999999 99999999999999876 47889999999987788999999
Q ss_pred EEEcccccCC-----CeeeEEEeCCCCC----CeEEEEEEEE
Q 005736 568 RVNLEGLVEG-----SVRDIWVPLEKVN----TGELRLQIEA 600 (680)
Q Consensus 568 ~i~L~~l~~~-----~~~~~w~~L~~~~----~G~i~l~l~~ 600 (680)
.++|+++... .....||+|.+.. +|+|++++.|
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999998742 2357999998754 5999999866
No 32
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.70 E-value=2.1e-16 Score=143.16 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=88.4
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~ 557 (680)
+.|.|+|++|+||+..+. .+.+||||++++. ..+++|+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~ 94 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD 94 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 489999999999988765 4789999999992 246799999 99999999999999875 3568999999999
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
.. ++++||++.++|.++......+.||+|.
T Consensus 95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 87 8999999999999998888889999984
No 33
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=2.3e-16 Score=141.26 Aligned_cols=112 Identities=16% Similarity=0.395 Sum_probs=96.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
+|+|+|++|++|++.+..+. +||||.+.++++..+|++ +++.||.|||+|.|.+.+.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~----------------------~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 58 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL----------------------SDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD 58 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC----------------------CCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC
Confidence 58999999999999886554 399999999999999998 7999999999999999876
Q ss_pred -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEE
Q 005736 375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVL 453 (680)
Q Consensus 375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l 453 (680)
.+.|.++|||++.. ++|++||++.++|+++..+ +..+.|++|++. .|++++.+.+
T Consensus 59 ~~~~l~v~v~d~~~~-~~~~~iG~~~~~l~~l~~~----------------------~~~~~w~~L~~~-~G~~~~~~~~ 114 (116)
T cd08376 59 QSQILEIEVWDKDTG-KKDEFIGRCEIDLSALPRE----------------------QTHSLELELEDG-EGSLLLLLTL 114 (116)
T ss_pred CCCEEEEEEEECCCC-CCCCeEEEEEEeHHHCCCC----------------------CceEEEEEccCC-CcEEEEEEEe
Confidence 67899999999986 5899999999999998643 356789999865 5999877654
No 34
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.70 E-value=3.2e-16 Score=142.28 Aligned_cols=111 Identities=25% Similarity=0.464 Sum_probs=95.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG 565 (680)
.|+|+|++|+||+.. +.+||||++.+++ +..+|++.++.||.|||+|.|.+..+ ...+.|.|||++.. +|++||
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence 699999999999874 4689999999976 45688866779999999999987654 36799999999888 899999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCCC------CeEEEEEEEEEE
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR 602 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~l~~~~ 602 (680)
.+.++|+++..+...+.||+|.+.. .|+|+++++|.+
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999998888889999997642 499999999973
No 35
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.70 E-value=2.8e-16 Score=141.79 Aligned_cols=113 Identities=15% Similarity=0.333 Sum_probs=94.8
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecC
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
|+|+|++|++|++.|..|. +||||++.+++ ...+|++ +++.||+|||+|.|.+.+.
T Consensus 2 L~v~v~~a~~L~~~d~~g~----------------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~ 59 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT----------------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV 59 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC----------------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC
Confidence 7899999999999887664 39999999986 6778888 7999999999999999877
Q ss_pred CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----eeeEEEE
Q 005736 375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SGELTVR 450 (680)
Q Consensus 375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G~l~~~ 450 (680)
.+.|.|+|||+|.. .+|++||++.++++++..+ ...+.|++|.+.+ .|+|++.
T Consensus 60 ~~~l~~~v~D~d~~-~~~~~iG~~~~~l~~l~~~----------------------~~~~~~~~L~~~~~~~~~G~l~l~ 116 (121)
T cd04042 60 TQPLYIKVFDYDRG-LTDDFMGSAFVDLSTLELN----------------------KPTEVKLKLEDPNSDEDLGYISLV 116 (121)
T ss_pred CCeEEEEEEeCCCC-CCCcceEEEEEEHHHcCCC----------------------CCeEEEEECCCCCCccCceEEEEE
Confidence 78899999999986 5999999999999998643 2456677876433 5889888
Q ss_pred EEEe
Q 005736 451 LVLK 454 (680)
Q Consensus 451 l~l~ 454 (680)
+.+.
T Consensus 117 ~~~~ 120 (121)
T cd04042 117 VTLT 120 (121)
T ss_pred EEEC
Confidence 7653
No 36
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=2.7e-16 Score=142.59 Aligned_cols=100 Identities=23% Similarity=0.444 Sum_probs=90.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C-CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~-~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~- 559 (680)
+.|.|+|++|+||+..+..+.+||||++++ + ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 95 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence 489999999999999998899999999999 3 467899999 999999999999998753 56899999999988
Q ss_pred CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 560 GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
++++||++.++|+++..+...+.||+|+
T Consensus 96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 96 RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCceeEEEEEecccccCCCCcceEEECc
Confidence 8999999999999998777889999986
No 37
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=2.1e-16 Score=138.68 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCceeEEE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA 567 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~iG~~ 567 (680)
|.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+.++ .+.|.|+|||++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 88999999999998888999999999999999999999 999999999999999874 6789999999886 8899999
Q ss_pred EEEcccccCCC--eeeEEEeCCCC
Q 005736 568 RVNLEGLVEGS--VRDIWVPLEKV 589 (680)
Q Consensus 568 ~i~L~~l~~~~--~~~~w~~L~~~ 589 (680)
.++|.++...+ ..+.||+|++.
T Consensus 80 ~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccccceeeeeEecCCC
Confidence 99999988643 67899999864
No 38
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=3.2e-16 Score=140.92 Aligned_cols=111 Identities=20% Similarity=0.366 Sum_probs=94.7
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccceeEEEEEe
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
|.|+|++|++|++.+..+. +||||++.++ ...++|++ +++.||+|||+|.|.+.
T Consensus 2 L~V~vi~a~~L~~~~~~~~----------------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~ 59 (119)
T cd04036 2 LTVRVLRATNITKGDLLST----------------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQ 59 (119)
T ss_pred eEEEEEEeeCCCccCCCCC----------------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeC
Confidence 7899999999999886554 3999999986 35778988 78999999999999987
Q ss_pred cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEE
Q 005736 373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRL 451 (680)
Q Consensus 373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l 451 (680)
.. .+.|.|+|||+|.. +|++||++.+++.++.. |...+.|+++.....|++++++
T Consensus 60 ~~~~~~l~v~v~d~d~~--~~~~iG~~~~~l~~l~~----------------------g~~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 60 SQVKNVLELTVMDEDYV--MDDHLGTVLFDVSKLKL----------------------GEKVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred cccCCEEEEEEEECCCC--CCcccEEEEEEHHHCCC----------------------CCcEEEEEECCCCCCceEEEEE
Confidence 65 45799999999874 89999999999999853 3467889999988889999888
Q ss_pred EE
Q 005736 452 VL 453 (680)
Q Consensus 452 ~l 453 (680)
.+
T Consensus 116 ~~ 117 (119)
T cd04036 116 LL 117 (119)
T ss_pred Ee
Confidence 65
No 39
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=5e-16 Score=140.96 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=87.3
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~ 557 (680)
+.|.|+|++|+||++++.. +.+||||++++. ..+.||+++ ++.||+|||+|.|.+... ...|.+.|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~ 94 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR 94 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence 4899999999999988864 899999999992 247799999 999999999999998652 579999999999
Q ss_pred CC-CCceeEEEEEEcccccC---CCeeeEEEeCC
Q 005736 558 IF-GDENMGSARVNLEGLVE---GSVRDIWVPLE 587 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~---~~~~~~w~~L~ 587 (680)
.. ++++||++.|+|.++.. ......||+|.
T Consensus 95 ~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 95 TLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 87 88999999999999864 34678999984
No 40
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=3.4e-16 Score=139.66 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--EEEeeecc-CCCCCeeeeEEEEEeeCC----ceEEEEEEEEec
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE 557 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l-~----~--~~~~T~~~-~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~ 557 (680)
|+|+|++|++|+..+ .|.+||||+|++ | . ++++|+++ ++.||+|||+|.|.+... ...|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999998877 489999999998 3 2 46789999 999999999999999742 457999999998
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
.. ++++||++.++|+++..++....|++|+..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 76 789999999999999988888999999763
No 41
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.68 E-value=7.3e-16 Score=138.61 Aligned_cols=111 Identities=24% Similarity=0.404 Sum_probs=99.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|.|.|+|++|+||+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+.+....+.|+|||++.. ++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 5799999999999998888899999999999888999999 99999999999999877678899999999986 899999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEEE
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 600 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 600 (680)
++.+++.++..+. ..|++|.+. .+|+|.+++++
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999986543 589999753 37999998865
No 42
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.68 E-value=3.5e-16 Score=140.53 Aligned_cols=112 Identities=18% Similarity=0.319 Sum_probs=91.7
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEEe
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVLH 372 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v~ 372 (680)
|.|+|+|++|++|++.+..+.+ ||||++.+++...+|++ . ++.||+|||+|.|.+.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~----------------------dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~ 58 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQ----------------------DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEIT 58 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCC----------------------CceEEEEECCCccccccccCCCCCCccCceEEEEec
Confidence 7899999999999998866543 99999999998888886 4 5799999999999998
Q ss_pred cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC--ceeeEEE
Q 005736 373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV--NSGELTV 449 (680)
Q Consensus 373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~--~~G~l~~ 449 (680)
.. .+.|.|+|||++.. .|++||++.+++.++.... ..+.|+++... ..|+|++
T Consensus 59 ~~~~~~l~i~v~d~~~~--~~~~iG~~~~~l~~~~~~~----------------------~~~~w~~L~~~~~~~G~i~l 114 (118)
T cd08681 59 EDKKPILKVAVFDDDKR--KPDLIGDTEVDLSPALKEG----------------------EFDDWYELTLKGRYAGEVYL 114 (118)
T ss_pred CCCCCEEEEEEEeCCCC--CCcceEEEEEecHHHhhcC----------------------CCCCcEEeccCCcEeeEEEE
Confidence 75 57899999998874 4999999999999985321 23457777543 4689888
Q ss_pred EEE
Q 005736 450 RLV 452 (680)
Q Consensus 450 ~l~ 452 (680)
+++
T Consensus 115 ~l~ 117 (118)
T cd08681 115 ELT 117 (118)
T ss_pred EEE
Confidence 774
No 43
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.6e-16 Score=143.56 Aligned_cols=112 Identities=28% Similarity=0.364 Sum_probs=97.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-------EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF- 559 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-------~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~- 559 (680)
.|+|+|++|++|+..+..+.+||||++++++. .++|+++ ++.||.|||+|.|.+......|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999988889999999999543 5799999 99999999999999887677899999999988
Q ss_pred CCceeEEEEEEcccccCCC------eeeEEEeCCCC-----CCeEEEEEEEE
Q 005736 560 GDENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEA 600 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~------~~~~w~~L~~~-----~~G~i~l~l~~ 600 (680)
++++||++.+++.++.... ....||+|++. ..|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999988543 35699999853 36999999987
No 44
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=4.7e-16 Score=145.04 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=95.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CC-CCCCccceeEEEEEec
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RP-GSDPRWDSMFNMVLHE 373 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~-t~nP~Wne~f~~~v~~ 373 (680)
.|+|+|++|++|++.|..|.+ ||||++.++++..+|++ .+ ++||+|||+|.|.+.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~s----------------------DPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~ 58 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVP----------------------EVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE 58 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCC----------------------CeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecC
Confidence 489999999999999877653 99999999999999997 45 6999999999999987
Q ss_pred C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc---------
Q 005736 374 E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN--------- 443 (680)
Q Consensus 374 ~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~--------- 443 (680)
. .+.|.|+|+|++.. .+|++||++.++|.++..... .+...+.|++|.+..
T Consensus 59 ~~~~~l~v~V~d~~~~-~~dd~lG~v~i~L~~l~~~~~------------------~~~~~~~W~~L~~~~~~~~~~k~~ 119 (150)
T cd04019 59 PFEDHLILSVEDRVGP-NKDEPLGRAVIPLNDIERRVD------------------DRPVPSRWFSLERPGGAMEQKKKR 119 (150)
T ss_pred ccCCeEEEEEEEecCC-CCCCeEEEEEEEHHHCcccCC------------------CCccCCceEECcCCCCcccccccC
Confidence 5 56899999999875 589999999999999863210 022345677776532
Q ss_pred --eeeEEEEEEEe
Q 005736 444 --SGELTVRLVLK 454 (680)
Q Consensus 444 --~G~l~~~l~l~ 454 (680)
.|+|++.+.+.
T Consensus 120 k~~g~l~l~i~~~ 132 (150)
T cd04019 120 KFASRIHLRLCLD 132 (150)
T ss_pred cccccEEEEEEec
Confidence 48899888764
No 45
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.68 E-value=5.3e-16 Score=139.83 Aligned_cols=110 Identities=25% Similarity=0.478 Sum_probs=96.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeEE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS 566 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG~ 566 (680)
|.|+|++|++|+..+..+.+||||++.+++. ..+|+++ ++.||.|||.|.|.+......|.|+|||++.. +|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 7899999999999998899999999999764 5799999 99999999999999887678999999999988 8999999
Q ss_pred EEEEcccccCC-CeeeEEEeCCCCC-----CeEEEEEEE
Q 005736 567 ARVNLEGLVEG-SVRDIWVPLEKVN-----TGELRLQIE 599 (680)
Q Consensus 567 ~~i~L~~l~~~-~~~~~w~~L~~~~-----~G~i~l~l~ 599 (680)
+.++++++... ...+.|++|++.. .|+|++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999888753 3467999997633 699988764
No 46
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=145.56 Aligned_cols=91 Identities=32% Similarity=0.526 Sum_probs=86.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|.|+|+|.+|.||..+|..+++||||.+.+++++.+|+++ +++||+|||.|.|.+.++...|.++|||+|.+ .|++||
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG 85 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMG 85 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccc
Confidence 5899999999999999987999999999999999999999 99999999999999999999999999999999 999999
Q ss_pred EEEEEcccccCCC
Q 005736 566 SARVNLEGLVEGS 578 (680)
Q Consensus 566 ~~~i~L~~l~~~~ 578 (680)
.+.|+|..+....
T Consensus 86 ~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 86 EATIPLKPLLEAQ 98 (168)
T ss_pred eeeeccHHHHHHh
Confidence 9999999887644
No 47
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=8.7e-16 Score=140.77 Aligned_cols=111 Identities=27% Similarity=0.552 Sum_probs=98.3
Q ss_pred cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEE
Q 005736 488 RKINVTVVEGKDLMPKDKS----------GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN 555 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~----------~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d 555 (680)
|.|+|+|++|++|...+.. +.+||||++.++++ ..+|+++ ++.||.|||+|.|.+. ....|.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 5899999999999887752 57999999999774 4699999 9999999999999997 55789999999
Q ss_pred ecCC-CCceeEEEEEEcccccC--CCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736 556 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT 601 (680)
Q Consensus 556 ~~~~-~d~~iG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~i~l~l~~~ 601 (680)
++.. ++++||.+.++|+++.. +...+.|++|+. +|+|+++++|.
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~l~l~~~~~ 129 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP--QGKLHVKIELK 129 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC--CcEEEEEEEEe
Confidence 9877 78999999999999886 567799999984 79999999887
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.68 E-value=9e-16 Score=139.13 Aligned_cols=100 Identities=29% Similarity=0.463 Sum_probs=90.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF- 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~- 559 (680)
+.|.|+|++|+||+..+..+.+||||++++. +..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~ 95 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCC
Confidence 4899999999999998888899999999983 367899999 99999999999999875 256899999999988
Q ss_pred CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 560 GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
++++||++.++|+++..+...+.|++|+
T Consensus 96 ~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 96 KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 8899999999999998888889999986
No 49
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=6e-16 Score=139.58 Aligned_cols=115 Identities=21% Similarity=0.407 Sum_probs=95.7
Q ss_pred eEEEEEEEecCCCCCCCCCC--CCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736 295 GIVYVRVISASKLSRSSLRG--SPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g--~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
|+|+|+|++|++|++.|... ... ..+||||++.++++.++|++ +++.||.|||+|+|.+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~------------------g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v 62 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVK------------------GKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCC------------------CCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEe
Confidence 78999999999999887421 000 12499999999999999998 7999999999999999
Q ss_pred ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736 372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR 450 (680)
Q Consensus 372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~ 450 (680)
.+. .+.|.|+|||++.. +|++||++.+++.++... ...+.|++|.+..+|+++++
T Consensus 63 ~~~~~~~l~i~v~d~~~~--~~~~iG~~~i~l~~l~~~----------------------~~~~~w~~L~~~~~G~~~~~ 118 (121)
T cd08391 63 DEVPGQELEIELFDEDPD--KDDFLGRLSIDLGSVEKK----------------------GFIDEWLPLEDVKSGRLHLK 118 (121)
T ss_pred CCCCCCEEEEEEEecCCC--CCCcEEEEEEEHHHhccc----------------------CccceEEECcCCCCceEEEE
Confidence 864 67899999999874 899999999999998642 23568999988778999877
Q ss_pred E
Q 005736 451 L 451 (680)
Q Consensus 451 l 451 (680)
+
T Consensus 119 ~ 119 (121)
T cd08391 119 L 119 (121)
T ss_pred E
Confidence 5
No 50
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=4.3e-16 Score=141.83 Aligned_cols=114 Identities=17% Similarity=0.322 Sum_probs=93.1
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC-
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE- 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~- 374 (680)
|+|+|++|++|++.+..|. +||||++.++++.++|++ +++.||+|||+|.|.+.+.
T Consensus 2 L~V~vi~A~~L~~~d~~g~----------------------~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~ 59 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGS----------------------SSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPS 59 (127)
T ss_pred eEEEEEEeeCCCCCCCCCC----------------------cCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHH
Confidence 8999999999999886554 399999999999999998 7999999999999998753
Q ss_pred ---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----ceee
Q 005736 375 ---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-----NSGE 446 (680)
Q Consensus 375 ---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-----~~G~ 446 (680)
...|.|+|||.+..+.+|++||++.++++++... |.....|++|+.. .+|+
T Consensus 60 ~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~---------------------~~~~~~w~~L~~~~~~~~~~G~ 118 (127)
T cd04022 60 RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPP---------------------SEAVVQRYPLEKRGLFSRVRGE 118 (127)
T ss_pred HccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCC---------------------CCccceEeEeeeCCCCCCccEE
Confidence 2579999999887522799999999999998632 2234567777643 3799
Q ss_pred EEEEEEE
Q 005736 447 LTVRLVL 453 (680)
Q Consensus 447 l~~~l~l 453 (680)
+++++.+
T Consensus 119 l~l~~~~ 125 (127)
T cd04022 119 IGLKVYI 125 (127)
T ss_pred EEEEEEE
Confidence 9888765
No 51
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.68 E-value=5.9e-16 Score=140.10 Aligned_cols=100 Identities=25% Similarity=0.518 Sum_probs=91.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG 565 (680)
.|+|+|++|++|...+..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 389999999999988888899999999999999999999 999999999999998864 57899999999987 789999
Q ss_pred EEEEEcccccCCCeeeEEEeCCC
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
.+.++|+++........||.|.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCC
Confidence 99999999887666789999975
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.67 E-value=5.8e-16 Score=138.80 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=86.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~ 559 (680)
+.|.|+|++|+||+..+ .+.+||||++++. ....+|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 48999999999999888 7899999999993 247799999 999999999999998753 45789999999876
Q ss_pred --CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736 560 --GDENMGSARVNLEGLVEGSVRDIWVPL 586 (680)
Q Consensus 560 --~d~~iG~~~i~L~~l~~~~~~~~w~~L 586 (680)
++++||.+.++|.++..+.....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 478999999999999877778999986
No 53
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.67 E-value=7.6e-16 Score=140.41 Aligned_cols=115 Identities=16% Similarity=0.327 Sum_probs=94.1
Q ss_pred eEEEEEEEecCCCCCCCC--CCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736 295 GIVYVRVISASKLSRSSL--RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~--~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
|+|+|+|++|++|++.+. .+. +||||.+.++.+..+|++ +++.||.|||+|.|.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~----------------------~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~ 58 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK----------------------SDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPI 58 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC----------------------cCCeEEEEECCEEEecceecCCcCCccCCcEEEEe
Confidence 799999999999998886 443 499999999999999998 8999999999999999
Q ss_pred ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-------c
Q 005736 372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-------N 443 (680)
Q Consensus 372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-------~ 443 (680)
.+. .+.|.|+|||++.. .+|++||++.+++.++..+.. +...+.|++|.+. .
T Consensus 59 ~~~~~~~l~i~v~d~~~~-~~~~~lG~~~i~l~~~~~~~~-------------------~~~~~~w~~L~~~~~~~~~~~ 118 (128)
T cd04024 59 FSAQNQLLKLILWDKDRF-AGKDYLGEFDIALEEVFADGK-------------------TGQSDKWITLKSTRPGKTSVV 118 (128)
T ss_pred cCCCCCEEEEEEEECCCC-CCCCcceEEEEEHHHhhcccc-------------------cCccceeEEccCcccCccccc
Confidence 874 67899999999876 589999999999999863210 1123567777654 3
Q ss_pred eeeEEEEE
Q 005736 444 SGELTVRL 451 (680)
Q Consensus 444 ~G~l~~~l 451 (680)
+|+|++++
T Consensus 119 ~G~i~l~~ 126 (128)
T cd04024 119 SGEIHLQF 126 (128)
T ss_pred cceEEEEE
Confidence 68888765
No 54
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=1.2e-15 Score=140.30 Aligned_cols=116 Identities=24% Similarity=0.431 Sum_probs=97.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC----------CceEEEEEEEEe
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNE 556 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~----------~~~~L~i~V~d~ 556 (680)
+.|+|+|++|++|+.++..+.+||||++.++++.++|+++ ++.||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 3799999999999999989999999999999999999999 99999999999997532 125799999999
Q ss_pred cCC-CCceeEEEEE-Eccccc---CCCeeeEEEeCCCC--CCeEEEEEEEEEEe
Q 005736 557 EIF-GDENMGSARV-NLEGLV---EGSVRDIWVPLEKV--NTGELRLQIEATRV 603 (680)
Q Consensus 557 ~~~-~d~~iG~~~i-~L~~l~---~~~~~~~w~~L~~~--~~G~i~l~l~~~~~ 603 (680)
+.. +|++||++.+ ++..+. ......+|++|... ..|+|+++++++++
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 987 8899999997 444443 24567899999753 46999999998753
No 55
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=1e-15 Score=139.00 Aligned_cols=99 Identities=27% Similarity=0.471 Sum_probs=85.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~ 557 (680)
+.|.|+|++|+||+..+..+.+||||++++.. ..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 48999999999999988888999999999943 67899999 99999999999998644 3568999999999
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
.. ++++||++.++|.+.. ......||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 87 8899999999999833 33446899985
No 56
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=2.8e-15 Score=136.33 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=85.9
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|+||+..+.. +.+||||++++. +++.||+++ ++.||.|||+|.|. +.. ....|.++|||++.
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 4899999999999988875 889999999983 467899999 99999999999994 432 24579999999988
Q ss_pred C-CCceeEEEEEEcccccCC--CeeeEEEeCC
Q 005736 559 F-GDENMGSARVNLEGLVEG--SVRDIWVPLE 587 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~--~~~~~w~~L~ 587 (680)
. ++++||++.++|+++... .....|.+|+
T Consensus 96 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 96 YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 8 899999999999998643 5678898886
No 57
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=1.8e-15 Score=136.79 Aligned_cols=100 Identities=28% Similarity=0.419 Sum_probs=88.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEecCC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~~~ 559 (680)
+.|.|+|++|+||+..+..+.+||||++.+ .++..+|+++ + .||+|||+|.|. +.. ....|.++|||++..
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 489999999999999988889999999887 3478899988 7 999999999998 553 367899999999988
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
++++||++.++|+++..+.....|++|++
T Consensus 95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 89999999999999988888899999973
No 58
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.3e-15 Score=138.09 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=98.1
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCc
Q 005736 488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDE 562 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~~--~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~ 562 (680)
|.|.|+|++|++|+..+ ..+.+||||++.+++ ..++|+++ ++.||.|||.|.|.+....+.|.|+|||++.. +|+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 58999999999998655 346799999999976 88999999 99999999999999886688999999999988 899
Q ss_pred eeEEEEEEcccccCCCeee-EEEeCC--CCCCeEEEEEEEEEE
Q 005736 563 NMGSARVNLEGLVEGSVRD-IWVPLE--KVNTGELRLQIEATR 602 (680)
Q Consensus 563 ~iG~~~i~L~~l~~~~~~~-~w~~L~--~~~~G~i~l~l~~~~ 602 (680)
+||++.++|.++....... .|+.+. ++..|+|+++++|.|
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 9999999999998766554 444443 345799999999973
No 59
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=8.6e-16 Score=135.12 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=80.3
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
|+|.|+|++|++|++.+..+... ..+||||++.+++...+|++ +++.||+|||+|.|.+.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~------------------~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~ 62 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTG------------------FDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCC------------------CccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence 89999999999999987422110 01499999999998999998 899999999999999876
Q ss_pred C--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 374 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 374 ~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
. ...|.|+|||+|.. ++|++||++.++|++|..+
T Consensus 63 ~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 63 HEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQELLNA 98 (108)
T ss_pred ccCCCEEEEEEEECCCC-CCCcceEEEEEEHHHHHhh
Confidence 4 34799999999986 6999999999999999754
No 60
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1e-15 Score=142.03 Aligned_cols=98 Identities=28% Similarity=0.434 Sum_probs=85.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEee---------------C-Cce
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI---------------G-GGE 547 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~---------------~-~~~ 547 (680)
|.|+|++|+||.. ..|.+||||+|++.. +..+|+++ ++.||+|||+|.|.+. + ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999987 468999999999954 67899999 9999999999999984 1 235
Q ss_pred EEEEEEEEecCC-CCceeEEEEEEcccccCC-CeeeEEEeCCCC
Q 005736 548 CLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV 589 (680)
Q Consensus 548 ~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~~ 589 (680)
.|.|.|||++.. +|++||++.|+|.++..+ .....||+|++.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 799999999987 899999999999999876 567899999864
No 61
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.65 E-value=1.2e-15 Score=133.91 Aligned_cols=101 Identities=13% Similarity=0.295 Sum_probs=85.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
+|.|+|++|++|+..+..+. +||||+++++++.++|++ +++.||+|||+|.|.+.+.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~----------------------~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~ 58 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKE----------------------PSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP 58 (105)
T ss_pred CEEEEEeeecCCCCcccCCC----------------------CCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC
Confidence 48999999999999875554 499999999999999998 7899999999999999985
Q ss_pred -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC
Q 005736 375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV 442 (680)
Q Consensus 375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~ 442 (680)
.+.|.|+|+|++. |++||++.++|.++..++ +...+.|++|++.
T Consensus 59 ~~~~l~v~v~d~~~----~~~iG~~~i~l~~l~~~~--------------------~~~~~~w~~L~~~ 103 (105)
T cd04050 59 ENQELEIEVKDDKT----GKSLGSLTLPLSELLKEP--------------------DLTLDQPFPLDNS 103 (105)
T ss_pred CCCEEEEEEEECCC----CCccEEEEEEHHHhhccc--------------------cceeeeeEecCCC
Confidence 6789999999764 799999999999986432 2356778888753
No 62
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=1.9e-15 Score=134.32 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=85.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 566 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~ 566 (680)
+.|.|+|++|++|+..+ ..||||++.+++++.+|++. + .||.|||.|.|.+.+....|.|+|||++...|++||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEE
Confidence 47999999999997544 46999999999999999999 6 6999999999999877667999999998779999999
Q ss_pred EEEEcccccCCCe--eeEEEeCCC
Q 005736 567 ARVNLEGLVEGSV--RDIWVPLEK 588 (680)
Q Consensus 567 ~~i~L~~l~~~~~--~~~w~~L~~ 588 (680)
+.++|+++..+.. ..+||+|+.
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecCh
Confidence 9999999885443 489999985
No 63
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=2e-15 Score=134.68 Aligned_cols=88 Identities=18% Similarity=0.324 Sum_probs=73.3
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-c----c--eeeeecc-CCCCCCccceeEE
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E----E--LTRRTDA-RPGSDPRWDSMFN 368 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-~----~--~~~~T~v-~~t~nP~Wne~f~ 368 (680)
|+|+|++|++|+..+. |. +||||+|.+ | . +.++|++ ++|+||+|||+|.
T Consensus 2 L~V~Vi~A~~L~~~d~-g~----------------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~ 58 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GM----------------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQ 58 (120)
T ss_pred EEEEEEECcCCCcccC-CC----------------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEE
Confidence 8999999999998873 54 399999997 3 2 3467888 7899999999999
Q ss_pred EEEecC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 369 MVLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 369 ~~v~~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
|.+... ...|.|.|||+|.. ++|++||++.+++.++..+
T Consensus 59 F~v~~~~~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~l~~~~~~ 101 (120)
T cd08395 59 FILGNEDDPESYELHICVKDYCFA-RDDRLVGVTVLQLRDIAQA 101 (120)
T ss_pred EEeeCcCCCceeEEEEEEEEeccc-CCCCEEEEEEEEHHHCcCC
Confidence 999743 24699999999865 6899999999999999643
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=3.9e-15 Score=135.12 Aligned_cols=100 Identities=21% Similarity=0.415 Sum_probs=89.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEecCC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~~~ 559 (680)
+.|.|+|++|+||+..+..+.+||||++++ +++..+|+++ ++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 489999999999999888889999999999 3578899999 99999999999998533 246799999999988
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
++++||++.+++.++..+.....|++|.
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 8899999999999998888889999986
No 65
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.64 E-value=2.4e-15 Score=142.30 Aligned_cols=103 Identities=24% Similarity=0.390 Sum_probs=90.9
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEE
Q 005736 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYN 555 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d 555 (680)
..+.|.|+|++|+||+..+..+.+||||++++ +...++|+++ ++.||.|||+|.|.+.. ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 45699999999999999988899999999998 2468899999 99999999999998543 24589999999
Q ss_pred ecCC-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 556 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
++.. ++++||++.+++.++......+.|+.+.+
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9988 79999999999999887777789998875
No 66
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=4.9e-15 Score=134.55 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=96.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 566 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~ 566 (680)
.+|+|+|++|++|...+..+.+||||++.++++.++|+++ ++.||.|||.|.|.+.+....|.|+|||++..+|++||.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~ 82 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQ 82 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEE
Confidence 4899999999999988888999999999999999999999 999999999999998877889999999998778899999
Q ss_pred EEEEcccccCCCeeeEEEeCCC-------CCCeEEEEEEEEE
Q 005736 567 ARVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT 601 (680)
Q Consensus 567 ~~i~L~~l~~~~~~~~w~~L~~-------~~~G~i~l~l~~~ 601 (680)
+.+++.++. ....+|++|.. ...|+|.+++...
T Consensus 83 ~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 83 ATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999998754 33447778852 2357777777554
No 67
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.64 E-value=4.2e-15 Score=135.31 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=89.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|+||+..+..+.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.|.|||++.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 4899999999999999988999999999993 468899999 999999999999998652 4689999999986
Q ss_pred C---CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 559 F---GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 559 ~---~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
. ++++||++.++|.++..+.....||+|.
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 3 7899999999999998777889999984
No 68
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.64 E-value=1.3e-15 Score=137.09 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=87.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEe
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNE 556 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~ 556 (680)
.+.|.|+|++|+||...+..+.+||||++++ + +..++|+++ ++.||+|||+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 3489999999999999888889999999998 2 258899999 99999999999999875 367999999999
Q ss_pred cCC-CCceeEEEEEEcccccCC-CeeeEEEeC
Q 005736 557 EIF-GDENMGSARVNLEGLVEG-SVRDIWVPL 586 (680)
Q Consensus 557 ~~~-~d~~iG~~~i~L~~l~~~-~~~~~w~~L 586 (680)
+.. ++++||.+.++|.++... .....||+|
T Consensus 93 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 93 GPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 987 899999999999999654 457789976
No 69
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.64 E-value=2.8e-15 Score=134.97 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=90.2
Q ss_pred EEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEec
Q 005736 297 VYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
|.|+|.+|++|++.+. .|. +||||.+.++++ ..+|++ ++|+||.|||+|+|.+.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~----------------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~ 59 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM----------------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR 59 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC----------------------cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC
Confidence 7899999999998752 232 399999999865 578888 799999999999999987
Q ss_pred CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----ceeeEE
Q 005736 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-----NSGELT 448 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-----~~G~l~ 448 (680)
....|.|.|||+|.. .+|++||++.++++++... ...+.|++++.. .+|+++
T Consensus 60 ~~~~l~~~v~d~~~~-~~~~~iG~~~i~l~~l~~~----------------------~~~~~w~~L~~~~~~~~~~G~i~ 116 (121)
T cd08401 60 TFRHLSFYIYDRDVL-RRDSVIGKVAIKKEDLHKY----------------------YGKDTWFPLQPVDADSEVQGKVH 116 (121)
T ss_pred CCCEEEEEEEECCCC-CCCceEEEEEEEHHHccCC----------------------CCcEeeEEEEccCCCCcccEEEE
Confidence 667899999999986 6899999999999998632 245678888643 268888
Q ss_pred EEE
Q 005736 449 VRL 451 (680)
Q Consensus 449 ~~l 451 (680)
+++
T Consensus 117 l~~ 119 (121)
T cd08401 117 LEL 119 (121)
T ss_pred EEE
Confidence 775
No 70
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.64 E-value=3e-15 Score=136.16 Aligned_cols=108 Identities=37% Similarity=0.649 Sum_probs=93.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC--------
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-------- 559 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-------- 559 (680)
.|+|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+..+...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 689999999999999888899999999999899999999 99999999999999876667899999999841
Q ss_pred ----CCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEE
Q 005736 560 ----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQI 598 (680)
Q Consensus 560 ----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l 598 (680)
.+++||++.+++.++.. ....||+|++. .+|+|++++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 58899999999998753 35699999863 258888763
No 71
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.63 E-value=7.9e-15 Score=133.18 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=80.5
Q ss_pred cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736 293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
++++|+|+|++|++|++.|..|.+ ||||++.++++..+|++ +++.||+|||.|.|.+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~----------------------dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~ 58 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGA----------------------DPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR 58 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCc----------------------CccEEEEECCEEEEeCccCCCCCCcccceEEEEe
Confidence 358999999999999998866643 99999999999999998 7999999999999998
Q ss_pred ecCCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 372 ~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
.+....|.|+|||++.. +|++||++.+++.++.
T Consensus 59 ~~~~~~l~i~V~d~~~~--~d~~lG~~~~~l~~~~ 91 (126)
T cd04046 59 KKPRSPIKIQVWNSNLL--CDEFLGQATLSADPND 91 (126)
T ss_pred cCCCCEEEEEEEECCCC--CCCceEEEEEecccCC
Confidence 88778899999998874 6999999999998764
No 72
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.63 E-value=2.8e-15 Score=134.89 Aligned_cols=113 Identities=23% Similarity=0.347 Sum_probs=91.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
+|.|+|++|++|+.. . +||||++.+++...+|++ +++.||+|||+|.|.+.+.
T Consensus 1 ~L~V~Vi~a~~L~~~----~----------------------~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~ 54 (121)
T cd08378 1 YLYVRVVKARGLPAN----S----------------------NDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL 54 (121)
T ss_pred CEEEEEEEecCCCcc----c----------------------CCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC
Confidence 489999999999877 2 299999999999999998 7899999999999998774
Q ss_pred -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----eeeEEE
Q 005736 375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SGELTV 449 (680)
Q Consensus 375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G~l~~ 449 (680)
.+.|.++|||+|.. +|++||++.++++++..... . .+.....|++|.+.. +|+|++
T Consensus 55 ~~~~L~~~v~d~d~~--~~~~lG~~~i~l~~l~~~~~------~-----------~~~~~~~W~~L~~~~~~~~~G~i~l 115 (121)
T cd08378 55 QGSTLEVSVWDKDKA--KDDFLGGVCFDLSEVPTRVP------P-----------DSPLAPQWYRLEDKKGGRVGGELML 115 (121)
T ss_pred cCCEEEEEEEeCCCC--cCceeeeEEEEhHhCcCCCC------C-----------CCCCCcceEEccCCCCCccceEEEE
Confidence 67899999999874 89999999999999864211 0 012345688886644 589998
Q ss_pred EEEE
Q 005736 450 RLVL 453 (680)
Q Consensus 450 ~l~l 453 (680)
++.+
T Consensus 116 ~~~~ 119 (121)
T cd08378 116 AVWF 119 (121)
T ss_pred EEEe
Confidence 8865
No 73
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.63 E-value=4.5e-15 Score=134.29 Aligned_cols=99 Identities=21% Similarity=0.393 Sum_probs=87.7
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~ 557 (680)
+.|.|+|++|+||+..+ ..+.+||||++++. ....+|+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 48999999999999888 67899999999982 156899999 999999999999998752 568999999999
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L 586 (680)
.. ++++||++.++|+++..+...+.||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEecccccccCCCccEEEC
Confidence 87 889999999999999877778899987
No 74
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.63 E-value=5.4e-15 Score=132.97 Aligned_cols=90 Identities=20% Similarity=0.410 Sum_probs=80.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
|.|+|+|++|++|+..+..+. +||||.+.++....+|++ +++.||.|||+|.|.+.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~----------------------~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~ 58 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK----------------------SDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD 58 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC----------------------CCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC
Confidence 789999999999999886554 399999999988889998 789999999999999987
Q ss_pred CCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
..+.+.|+|||++.. .++++||++.+++.++..
T Consensus 59 ~~~~l~~~v~d~~~~-~~~~~iG~~~~~l~~~~~ 91 (119)
T cd08377 59 IHDVLEVTVYDEDKD-KKPEFLGKVAIPLLSIKN 91 (119)
T ss_pred cCCEEEEEEEECCCC-CCCceeeEEEEEHHHCCC
Confidence 778899999999875 589999999999999853
No 75
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.63 E-value=6e-15 Score=133.88 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=90.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeeccCCCCCCccceeEEEEEec
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v~~t~nP~Wne~f~~~v~~ 373 (680)
..|+|+|++|++|++.+ . +||||.+.+++. ..+|+++++.||.|||+|.|.+..
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~----------------------~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~ 58 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V----------------------PHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLP 58 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C----------------------CCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCC
Confidence 57999999999998743 2 399999999874 468888778999999999998665
Q ss_pred CC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC------ceee
Q 005736 374 ET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV------NSGE 446 (680)
Q Consensus 374 ~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~------~~G~ 446 (680)
.. +.++|.|||.+.. ++|++||++.++|.++..+ ...+.|+++++. ..|+
T Consensus 59 ~~~~~l~v~v~d~~~~-~~d~~iG~v~i~l~~l~~~----------------------~~~~~W~~L~~~~~~~~~~~G~ 115 (126)
T cd08400 59 PDVNSFTISLSNKAKR-SKDSEIAEVTVQLSKLQNG----------------------QETDEWYPLSSASPLKGGEWGS 115 (126)
T ss_pred CCcCEEEEEEEECCCC-CCCCeEEEEEEEHhHccCC----------------------CcccEeEEcccCCCCCCCcCcE
Confidence 43 5799999999886 6999999999999998642 345678888643 2499
Q ss_pred EEEEEEEe
Q 005736 447 LTVRLVLK 454 (680)
Q Consensus 447 l~~~l~l~ 454 (680)
|++.+.+.
T Consensus 116 i~l~l~~~ 123 (126)
T cd08400 116 LRIRARYS 123 (126)
T ss_pred EEEEEEEE
Confidence 99988764
No 76
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=4.9e-15 Score=134.20 Aligned_cols=93 Identities=18% Similarity=0.344 Sum_probs=80.3
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--eeeeecc-CCCCCCccceeEEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDA-RPGSDPRWDSMFNMV 370 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~--~~~~T~v-~~t~nP~Wne~f~~~ 370 (680)
.|+|+|+|.+|++|+..+..+. .+||||.+.++. ...+|++ +++.||.|||.|.|.
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~---------------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~ 59 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGG---------------------TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL 59 (124)
T ss_pred CeEEEEEEEcccCCCcccccCC---------------------CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEE
Confidence 4999999999999997653221 139999999987 7889988 789999999999999
Q ss_pred EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
+.+..+.|.|+|||++.. .+|++||++.++++++...
T Consensus 60 v~~~~~~l~~~v~d~~~~-~~d~~iG~~~~~l~~l~~~ 96 (124)
T cd04044 60 VNSLTEPLNLTVYDFNDK-RKDKLIGTAEFDLSSLLQN 96 (124)
T ss_pred eCCCCCEEEEEEEecCCC-CCCceeEEEEEEHHHhccC
Confidence 986678999999999886 5899999999999999754
No 77
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=6.6e-15 Score=133.21 Aligned_cols=101 Identities=19% Similarity=0.371 Sum_probs=89.9
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC
Q 005736 488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~ 559 (680)
+.|.|+|++|+||+..+ ..+.+||||++++ +....+|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~ 93 (123)
T cd08390 14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF 93 (123)
T ss_pred CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence 48999999999999888 5788999999998 3467899999 999999999999998753 46899999999987
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
++++||++.++|+++........|++|+.
T Consensus 94 ~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 94 SRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 78999999999999998888889999973
No 78
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.63 E-value=7e-15 Score=133.65 Aligned_cols=111 Identities=25% Similarity=0.484 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCc
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE 562 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~ 562 (680)
.|+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999988889999999999853 57899999 999999999999999874 67899999999987 899
Q ss_pred eeEEEEEEcccccC---CCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736 563 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT 601 (680)
Q Consensus 563 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~i~l~l~~~ 601 (680)
+||++.++|.++.. +...+.|++|.+ +|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 99999999987543 346789999986 79999998775
No 79
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.62 E-value=3.3e-15 Score=135.06 Aligned_cols=108 Identities=17% Similarity=0.330 Sum_probs=93.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-C--Ccee
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM 564 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~--d~~i 564 (680)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++ ++.||.|||+|.|.+.. ...|.|+|||++.. . |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 79999999999998888999999999995 788999999 99999999999999975 77899999999877 3 5799
Q ss_pred EEEEEEcccccCCC-eeeEEEeCCCCC-------CeEEEEEE
Q 005736 565 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI 598 (680)
Q Consensus 565 G~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~i~l~l 598 (680)
|++.+++.++.... ....|++|...+ .|+|.+++
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999987543 347899996533 47777664
No 80
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.62 E-value=2.4e-15 Score=133.22 Aligned_cols=99 Identities=24% Similarity=0.478 Sum_probs=88.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEeeecc-CCCCCee-eeEEEEEeeCC---ceEEEEEEEEecCC-CCc
Q 005736 490 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE 562 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~T~~~-~t~nP~w-ne~f~f~v~~~---~~~L~i~V~d~~~~-~d~ 562 (680)
|.|+|++|++|+..+. .+.+||||+++++++.++|+++ ++.||.| ||+|.|.+... ...|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 6889999999999999999999 9999999 99999998763 46899999999987 889
Q ss_pred eeEEEEEEcccccC---CCeeeEEEeCCC
Q 005736 563 NMGSARVNLEGLVE---GSVRDIWVPLEK 588 (680)
Q Consensus 563 ~iG~~~i~L~~l~~---~~~~~~w~~L~~ 588 (680)
+||++.+++.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999886 446789999865
No 81
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.62 E-value=6.2e-15 Score=138.92 Aligned_cols=136 Identities=16% Similarity=0.244 Sum_probs=93.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCC-Ccc---cccccCCC----CccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCcc
Q 005736 294 GGIVYVRVISASKLSRSSLRGS-PSR---RQQNYSAD----SSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRW 363 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~-~~~---~~~~~~s~----~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~W 363 (680)
.|.|+|+|.+|++|+++|.... ..+ +-.....+ .......+...+||||++.+++. ..+|++ +++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 3999999999999999984211 000 00000000 00000011224599999999964 468998 78999999
Q ss_pred ceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc
Q 005736 364 DSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN 443 (680)
Q Consensus 364 ne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 443 (680)
||+|.|.+.+..+.|.|.|+|.|.. .+++||++.++++++..+ ...+.|+++.+.+
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~~g----------------------~~~~~w~~L~~~~ 141 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVV--GAQLIGRAYIPVEDLLSG----------------------EPVEGWLPILDSN 141 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCc--CCcEEEEEEEEhHHccCC----------------------CCcceEEECcCCC
Confidence 9999999887777899999998874 578999999999998632 3456788875431
Q ss_pred ------eeeEEEEEEE
Q 005736 444 ------SGELTVRLVL 453 (680)
Q Consensus 444 ------~G~l~~~l~l 453 (680)
.|+|++++.+
T Consensus 142 ~~~~~~~~~l~v~~~f 157 (158)
T cd04015 142 GKPPKPGAKIRVSLQF 157 (158)
T ss_pred CCCCCCCCEEEEEEEE
Confidence 3678777643
No 82
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.62 E-value=5.3e-15 Score=134.41 Aligned_cols=111 Identities=23% Similarity=0.395 Sum_probs=89.6
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--eeeeecc-CCCCCCccceeEEEEEec
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~--~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
|.|+|++|++|+. ..|. +||||.+.++. +.++|++ +++.||+|||.|.|.+..
T Consensus 1 l~v~v~~A~~L~~--~~g~----------------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~ 56 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS----------------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP 56 (126)
T ss_pred CEEEEEEecCCCC--CCCC----------------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC
Confidence 6799999999987 3343 39999999973 5689998 789999999999999976
Q ss_pred CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC------ceeeE
Q 005736 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV------NSGEL 447 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~------~~G~l 447 (680)
..+.|.|+|||+|.. ++|++||++.+++.++.... ....|+++... ..|+|
T Consensus 57 ~~~~l~~~v~d~~~~-~~~~~lG~~~i~l~~l~~~~----------------------~~~~~~~L~~~~~~~~~~~G~l 113 (126)
T cd08678 57 NSKELLFEVYDNGKK-SDSKFLGLAIVPFDELRKNP----------------------SGRQIFPLQGRPYEGDSVSGSI 113 (126)
T ss_pred CCCEEEEEEEECCCC-CCCceEEEEEEeHHHhccCC----------------------ceeEEEEecCCCCCCCCcceEE
Confidence 677899999999986 58999999999999987543 22346666533 36999
Q ss_pred EEEEEEe
Q 005736 448 TVRLVLK 454 (680)
Q Consensus 448 ~~~l~l~ 454 (680)
.+++.+.
T Consensus 114 ~l~~~~~ 120 (126)
T cd08678 114 TVEFLFM 120 (126)
T ss_pred EEEEEEe
Confidence 9888653
No 83
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=8.5e-15 Score=133.29 Aligned_cols=109 Identities=28% Similarity=0.391 Sum_probs=97.2
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-CCceeEEEE
Q 005736 494 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR 568 (680)
Q Consensus 494 I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-~d~~iG~~~ 568 (680)
|++|++|+. ..+.+||||++++++..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 688999987 56889999999999999999999 99999999999999864 367899999999987 889999999
Q ss_pred EEcccccCCCeeeEEEeCCCC----CCeEEEEEEEEEEec
Q 005736 569 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVD 604 (680)
Q Consensus 569 i~L~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~~~~~ 604 (680)
++|+++..+.....|++|.+. ..|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence 999999988888999999743 258999999999654
No 84
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=3.3e-15 Score=134.66 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=77.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF 367 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f 367 (680)
.|.|.|+|++|++|+..+ .+. +||||++.+. ..+++|++ +++.||+|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~----------------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F 68 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD----------------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC----------------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence 489999999999999998 554 3999999996 34678998 799999999999
Q ss_pred EEEE-e--cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 368 NMVL-H--EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 368 ~~~v-~--~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.|.+ . +. ...|.|+|||+|.. +++++||++.++|+++..+
T Consensus 69 ~f~~~~~~~l~~~~L~~~V~d~d~~-~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 69 VYDGLPVEDLQQRVLQVSVWSHDSL-VENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred EEecCChHHhCCCEEEEEEEeCCCC-cCCcEEEEEEEeccccccC
Confidence 9987 2 22 45799999999986 6899999999999998643
No 85
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.61 E-value=6.1e-15 Score=132.94 Aligned_cols=111 Identities=16% Similarity=0.334 Sum_probs=90.7
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecC
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
|.|+|++|++|++.|..|.+ ||||.+.+++. ..+|++ ++++||.|||.|.|.+.+.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~ 59 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSS----------------------DPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG 59 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCC----------------------CceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC
Confidence 78999999999999876643 99999999865 468988 7899999999999998776
Q ss_pred CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc-----eeeEEE
Q 005736 375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN-----SGELTV 449 (680)
Q Consensus 375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-----~G~l~~ 449 (680)
...|.|+|||++.. ++|++||++.+++..+...+ ...+.|++|.+.. .|++++
T Consensus 60 ~~~l~v~v~d~~~~-~~d~~iG~~~~~~~~~~~~~---------------------~~~~~W~~L~~~~~~~~~~G~i~l 117 (121)
T cd04054 60 FHTVSFYVLDEDTL-SRDDVIGKVSLTREVISAHP---------------------RGIDGWMNLTEVDPDEEVQGEIHL 117 (121)
T ss_pred CCEEEEEEEECCCC-CCCCEEEEEEEcHHHhccCC---------------------CCCCcEEECeeeCCCCccccEEEE
Confidence 67899999999986 68999999999988875221 1245688886532 688876
Q ss_pred EE
Q 005736 450 RL 451 (680)
Q Consensus 450 ~l 451 (680)
++
T Consensus 118 ~~ 119 (121)
T cd04054 118 EL 119 (121)
T ss_pred EE
Confidence 65
No 86
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.61 E-value=4e-15 Score=130.97 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=77.0
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc----eeeeecc-CCCCCCcc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDA-RPGSDPRW 363 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~----~~~~T~v-~~t~nP~W 363 (680)
.+.+..|.|.|+|++|++|+ .+ |. +||||++.+.. .+++|++ ++|+||+|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~~--g~----------------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvf 62 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-VD--AG----------------------CECYISGCVSVSEGQKEAQTALKKLALHTQW 62 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-CC--CC----------------------CCeEEEEEEcCCcCccEEEcceecCCCCCcc
Confidence 33345599999999999998 22 32 39999999963 5778998 79999999
Q ss_pred ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
||+|.|.|... ...|.|.|||+|+. +++++||++.+++.++.
T Consensus 63 nE~f~F~v~~~~l~~~tL~~~V~d~Drf-s~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 63 EEELVFPLPEEESLDGTLTLTLRCCDRF-SRHSTLGELRLKLADVS 107 (118)
T ss_pred ccEEEEeCCHHHhCCcEEEEEEEeCCCC-CCCceEEEEEEcccccc
Confidence 99999998763 45799999999997 69999999999999874
No 87
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=6.7e-15 Score=130.60 Aligned_cols=98 Identities=19% Similarity=0.376 Sum_probs=86.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-----ceEEEEEEEEecCC-
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF- 559 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-----~~~L~i~V~d~~~~- 559 (680)
.+.|+|+|++|++|. .+.+||||+++++++.++|+++ ++.||.|||+|.|.+..+ ...|.|+|||++..
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 458999999999998 4789999999999999999999 999999999999997643 46899999999987
Q ss_pred CCceeEEEEEEcccccCC---CeeeEEEeCCC
Q 005736 560 GDENMGSARVNLEGLVEG---SVRDIWVPLEK 588 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~---~~~~~w~~L~~ 588 (680)
++++||++.++|+++..+ .....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 799999999999998755 34688999975
No 88
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=3e-15 Score=132.75 Aligned_cols=98 Identities=27% Similarity=0.491 Sum_probs=85.7
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~~ 558 (680)
|+|+|+|++|++|+..+.. +.+||||++++. +..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5899999999999998887 899999999983 467899999 99999999999998764 25689999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
. +|++||++.+++.++.. ...|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCcccc
Confidence 8 89999999999999873 347887764
No 89
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.60 E-value=5.4e-15 Score=130.04 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=80.3
Q ss_pred cEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC-
Q 005736 488 RKINVTVVEGKDLMPKDKS----GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF- 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~- 559 (680)
|+|.|+|++|++|+..+.. +.+||||+++++++.++|+++ ++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 5899999999999886532 358999999999999999999 999999999999998753 45899999999988
Q ss_pred CCceeEEEEEEcccccCCC
Q 005736 560 GDENMGSARVNLEGLVEGS 578 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~ 578 (680)
+|++||++.++|+++..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 8999999999999987543
No 90
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.60 E-value=1.5e-14 Score=132.63 Aligned_cols=124 Identities=16% Similarity=0.378 Sum_probs=95.0
Q ss_pred CeEEEEEEEecCCCCCCCCCCCC-cccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSP-SRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFNMV 370 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~-~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~~~ 370 (680)
.|.|+|+|++|++|++.|..+.. .|+.. +..+||||++.++++. .+|++ +++.||.|||+|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~-------------~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~ 69 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKG-------------SQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTE 69 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccC-------------ccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEE
Confidence 39999999999999988753210 00000 1235999999999754 68887 789999999999999
Q ss_pred EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736 371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR 450 (680)
Q Consensus 371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~ 450 (680)
+. ....|.|.|||.+.. .+|++||++.++|.++..+. +...+.|++|+ +.|+++++
T Consensus 70 v~-~~~~l~~~v~d~~~~-~~~~~iG~~~i~l~~l~~~~--------------------~~~~~~w~~L~--~~G~l~l~ 125 (132)
T cd04014 70 VH-NGRNLELTVFHDAAI-GPDDFVANCTISFEDLIQRG--------------------SGSFDLWVDLE--PQGKLHVK 125 (132)
T ss_pred cC-CCCEEEEEEEeCCCC-CCCceEEEEEEEhHHhcccC--------------------CCcccEEEEcc--CCcEEEEE
Confidence 97 346799999998875 58999999999999986521 22457899997 45999988
Q ss_pred EEEe
Q 005736 451 LVLK 454 (680)
Q Consensus 451 l~l~ 454 (680)
+.++
T Consensus 126 ~~~~ 129 (132)
T cd04014 126 IELK 129 (132)
T ss_pred EEEe
Confidence 8664
No 91
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=4.3e-15 Score=131.77 Aligned_cols=91 Identities=19% Similarity=0.358 Sum_probs=78.4
Q ss_pred eEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccceeEEE
Q 005736 295 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSMFNM 369 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~f~~ 369 (680)
|+|+|+|++|++|++.|.. +. +||||++.+. ....+|++ ++++||+|||+|.|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~----------------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f 58 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS----------------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV 58 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC----------------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence 7999999999999998865 54 3999999985 34678998 89999999999999
Q ss_pred EEecC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 370 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 370 ~v~~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.+... ...|.|+|||+|.. ++|++||++.+++.++.+.
T Consensus 59 ~~~~~~~~~~~~l~~~V~d~d~~-~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 59 LVTPDEVKAGERLSCRLWDSDRF-TADDRLGRVEIDLKELIED 100 (111)
T ss_pred EeCchhccCCCEEEEEEEeCCCC-CCCCcceEEEEEHHHHhcC
Confidence 87653 45799999999986 5899999999999999743
No 92
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.60 E-value=1.1e-14 Score=131.67 Aligned_cols=90 Identities=19% Similarity=0.333 Sum_probs=79.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
.|+|+|++|++|++.+..+. +||||++.+++...+|++ +++.||.|||+|.|.+.+.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~----------------------~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 58 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT----------------------SDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG 58 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC----------------------cCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC
Confidence 38999999999999886554 399999999998899998 7899999999999999876
Q ss_pred -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
...|.|+|||++.. +++++||++.+++.++...
T Consensus 59 ~~~~l~~~v~d~~~~-~~~~~iG~~~~~l~~l~~~ 92 (123)
T cd04025 59 ADSPLSVEVWDWDLV-SKNDFLGKVVFSIQTLQQA 92 (123)
T ss_pred CCCEEEEEEEECCCC-CCCcEeEEEEEEHHHcccC
Confidence 56899999999876 5899999999999998643
No 93
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=9.8e-15 Score=131.20 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=94.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 564 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i 564 (680)
|.|+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.||.|||+|.|.+....+.|.|+|||++.. +|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 57999999999999988889999999999966 67899999 99999999999999887778999999999988 88999
Q ss_pred EEEEEEcccccCCCeeeEEEeCCCCCCeEEE
Q 005736 565 GSARVNLEGLVEGSVRDIWVPLEKVNTGELR 595 (680)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~ 595 (680)
|++.+++.++... ..+.||.|-+.+.+.+.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 9999999999876 45778888776666553
No 94
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=6.6e-15 Score=136.78 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=89.5
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEE
Q 005736 490 INVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVK 552 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~--------------~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~ 552 (680)
|.|+|++|++|+.++.. +.+||||+|.++++..+|+++ ++.||+|||+|.|.+.. ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999988744 368999999999999999999 99999999999999754 36789999
Q ss_pred EEEecCC-CCceeEEEEEEcccccCCCe-------eeEEEeCCCCCCeE
Q 005736 553 CYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE 593 (680)
Q Consensus 553 V~d~~~~-~d~~iG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~ 593 (680)
|||++.. +|++||.+.++|.++..... ...|+.|.+..++.
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 9999988 99999999999999875442 36888887765554
No 95
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.59 E-value=8.5e-15 Score=132.61 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=80.2
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCC
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDP 361 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP 361 (680)
.+.+..|.|.|+|++|+||++.+.. |. +||||++.+. ...++|++ +++.||
T Consensus 9 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~----------------------~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04029 9 SYDYKTQSLNVHVKECRNLAYGDEAKKR----------------------SNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66 (125)
T ss_pred EEECCCCeEEEEEEEecCCCccCCCCCC----------------------CCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence 3445569999999999999988743 32 4999999985 23578988 789999
Q ss_pred ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
+|||+|.|.+... ...|.|+|||+|.. +++++||++.++|.++..+
T Consensus 67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~-~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 67 VYNETLKYSISHSQLETRTLQLSVWHYDRF-GRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred cccceEEEECCHHHhCCCEEEEEEEECCCC-CCCcEEEEEEEeCCccccc
Confidence 9999999998752 45799999999986 6999999999999998644
No 96
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.59 E-value=2.8e-14 Score=132.02 Aligned_cols=90 Identities=16% Similarity=0.358 Sum_probs=82.2
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
|.|+|+|++|++|+..+. +. +||||+++++++..+|++ +++.||+|||+|.|.+.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~----------------------sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~ 58 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS----------------------SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN 58 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC----------------------cCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC
Confidence 899999999999998886 43 399999999999999998 899999999999999998
Q ss_pred CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
....+.|+|||+|.. ++|++||++.++++++...
T Consensus 59 ~~~~l~~~V~D~d~~-~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 59 PMAPLKLEVFDKDTF-SKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCEEEEEEEECCCC-CCCCEEEEEEEEHHHhhhh
Confidence 888999999999986 5899999999999998654
No 97
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.4e-14 Score=133.07 Aligned_cols=118 Identities=16% Similarity=0.323 Sum_probs=91.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-------eeeecc-CCCCCCccceeE
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-------TRRTDA-RPGSDPRWDSMF 367 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-------~~~T~v-~~t~nP~Wne~f 367 (680)
.|+|+|++|++|++.|..|. +||||++.+++. ..+|++ +++.||.|||+|
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~----------------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f 58 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA----------------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEF 58 (133)
T ss_pred CEEEEEEEeECCCcccCCCC----------------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEE
Confidence 38999999999999886654 399999999754 468887 899999999999
Q ss_pred EEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----
Q 005736 368 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV----- 442 (680)
Q Consensus 368 ~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~----- 442 (680)
.|.+......|.|+|||+|.. ++|++||++.+++.++...... +. +.....|++|++.
T Consensus 59 ~f~~~~~~~~l~~~v~d~~~~-~~~~~iG~~~i~l~~l~~~~~~------~~----------~~~~~~~~~l~~~~~~~~ 121 (133)
T cd04033 59 FFRVNPREHRLLFEVFDENRL-TRDDFLGQVEVPLNNLPTETPG------NE----------RRYTFKDYLLRPRSSKSR 121 (133)
T ss_pred EEEEcCCCCEEEEEEEECCCC-CCCCeeEEEEEEHHHCCCcCcc------cc----------ccccchheeeeecCCCCc
Confidence 999987677899999999986 5899999999999998754210 00 0123456666632
Q ss_pred ceeeEEEEEE
Q 005736 443 NSGELTVRLV 452 (680)
Q Consensus 443 ~~G~l~~~l~ 452 (680)
..|+|++++.
T Consensus 122 ~~G~l~~~~~ 131 (133)
T cd04033 122 VKGHLRLYMA 131 (133)
T ss_pred ceeEEEEEEe
Confidence 3688888774
No 98
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.59 E-value=1.2e-14 Score=129.26 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=76.0
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeeccCCCCCCccceeEEEEEecC
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v~~t~nP~Wne~f~~~v~~~ 374 (680)
|.|.|+|++|++|+..+ + .||||+|++++++.+|++.++.||.|||.|.|.+.+.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~-----------------------~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~ 56 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--K-----------------------FNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRL 56 (127)
T ss_pred ceEEEEEEEeeCCCCCC--C-----------------------CCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCC
Confidence 78999999999997544 1 3899999999999999985446999999999999887
Q ss_pred CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.+.|.++|||+|. ..||+||++.|+|.++...
T Consensus 57 ~~~L~v~V~dkd~--~~DD~lG~v~i~L~~v~~~ 88 (127)
T cd08394 57 DLGLVIELWNKGL--IWDTLVGTVWIPLSTIRQS 88 (127)
T ss_pred CCEEEEEEEeCCC--cCCCceEEEEEEhHHcccC
Confidence 7779999999885 4999999999999998643
No 99
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=1.5e-14 Score=132.34 Aligned_cols=107 Identities=32% Similarity=0.494 Sum_probs=94.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 559 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~ 559 (680)
+.|+|+|++|++|+..+..+.+||||++.+. ...++|+++ ++.+|.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 4899999999999988888899999999994 378999999 999999999999998753 56899999999877
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEE
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 595 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~ 595 (680)
++++||++.++|.++... ....||+|.+.+.|+..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~~ 128 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEYY 128 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCccccccc
Confidence 889999999999998754 67899999998888753
No 100
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.59 E-value=8.8e-15 Score=132.59 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=79.9
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCC
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDP 361 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP 361 (680)
.+.+..+.|.|+|++|+||++.|.. |. +||||++.+. ...++|++ +++.||
T Consensus 9 ~y~~~~~~L~V~vi~a~~L~~~d~~~g~----------------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd08393 9 DYDPKLRELHVHVIQCQDLAAADPKKQR----------------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNP 66 (125)
T ss_pred EEECCCCEEEEEEEEeCCCCCcCCCCCC----------------------CCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence 3344458999999999999998864 43 3999999995 23578998 799999
Q ss_pred ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+|||+|.|.+... ...|.|+|||+|.. +++++||++.++|+++..
T Consensus 67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~-~~~~~iG~~~i~L~~~~~ 114 (125)
T cd08393 67 VFNETLRYKVEREELPTRVLNLSVWHRDSL-GRNSFLGEVEVDLGSWDW 114 (125)
T ss_pred ccCceEEEECCHHHhCCCEEEEEEEeCCCC-CCCcEeEEEEEecCcccc
Confidence 9999999998752 35799999999986 689999999999999853
No 101
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.58 E-value=1.5e-14 Score=131.22 Aligned_cols=96 Identities=8% Similarity=0.153 Sum_probs=80.1
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCC
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDP 361 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP 361 (680)
.+....+.|.|+|++|+||++.+.. |. +||||++.+. ..+++|++ +++.||
T Consensus 9 ~Y~~~~~~L~V~V~~a~nL~~~d~~~g~----------------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 9 HYNFRTSCLEITIKACRNLAYGDEKKKK----------------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred EEeCCCCEEEEEEEecCCCCccCCCCCC----------------------CCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 3444559999999999999998854 43 3999999986 23678888 799999
Q ss_pred ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+|||+|.|.+... ...|.+.|||.+.. .++++||++.|+|+++.-
T Consensus 67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~-~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 67 VFNETLKYVVEADLLSSRQLQVSVWHSRTL-KRRVFLGEVLIPLADWDF 114 (128)
T ss_pred ccceEEEEEcCHHHhCCcEEEEEEEeCCCC-cCcceEEEEEEEcCCccc
Confidence 9999999998753 34799999999986 689999999999999853
No 102
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.58 E-value=2.6e-14 Score=130.02 Aligned_cols=89 Identities=15% Similarity=0.372 Sum_probs=77.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
.|+|+|++|++|+..|..|. +||||.+.+++...+|++ +++.||.|||+|.|.+...
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~----------------------~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~ 59 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT----------------------SDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC----------------------cCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC
Confidence 58999999999999886654 399999999988889998 7899999999999998766
Q ss_pred CCeEEEEEEEeCCC----------CCCCceeEEEEEeccccc
Q 005736 375 TGTVRFNLYECIPG----------HVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 375 ~~~l~l~v~d~d~~----------~~~d~~lG~~~i~l~~l~ 406 (680)
...|.|+|||+|.. ..++++||++.+++.++.
T Consensus 60 ~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 60 SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc
Confidence 67899999999852 137999999999998874
No 103
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.58 E-value=2.6e-14 Score=129.56 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=92.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCC----ceEEEEEEEEecCC-C
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G 560 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~-~ 560 (680)
|.|.|+|++|++|+..+..+.+||||++.++++.++|++. + +.||.|||+|.|.+..+ ...|.|+|||++.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 4799999999999988888899999999999999999988 5 89999999999999875 57899999999988 8
Q ss_pred CceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 561 DENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 561 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
+++||++.++|.++..++..+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999887778899999874
No 104
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.4e-14 Score=128.46 Aligned_cols=98 Identities=26% Similarity=0.397 Sum_probs=86.5
Q ss_pred CCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCceeEEEEEEcccccC-CCee
Q 005736 505 KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVE-GSVR 580 (680)
Q Consensus 505 ~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~-~~~~ 580 (680)
.+|.+||||++++++ ...+|+++ ++.||.|||.|.|.+.+. ...|.|.|||++..++++||++.++|+++.. ....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 357899999999977 46799999 999999999999999875 6789999999987788999999999999864 4456
Q ss_pred eEEEeCCCCCCeEEEEEEEEEE
Q 005736 581 DIWVPLEKVNTGELRLQIEATR 602 (680)
Q Consensus 581 ~~w~~L~~~~~G~i~l~l~~~~ 602 (680)
..||+|++...|+|+++++|.|
T Consensus 89 ~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 89 QQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred ceeEECCCCCCCEEEEEEEEec
Confidence 8999999877899999999985
No 105
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.57 E-value=1.6e-14 Score=130.83 Aligned_cols=96 Identities=18% Similarity=0.279 Sum_probs=81.3
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWD 364 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wn 364 (680)
.+.+..|.|.|+|++|++|++.+..|. +||||++.+. ...++|++ +++.||+||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~----------------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGT----------------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCC----------------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence 334456999999999999999887664 3999999984 45688998 799999999
Q ss_pred eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
|+|.|.+... ...|.|+|||+|.. .+|++||++.++++++..
T Consensus 68 e~f~f~v~~~~l~~~~l~i~V~d~~~~-~~~~~iG~~~i~l~~~~~ 112 (124)
T cd08387 68 ESFVFEVPPQELPKRTLEVLLYDFDQF-SRDECIGVVELPLAEVDL 112 (124)
T ss_pred cEEEEeCCHHHhCCCEEEEEEEECCCC-CCCceeEEEEEecccccC
Confidence 9999998753 45799999999876 589999999999999964
No 106
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.57 E-value=3.1e-14 Score=128.68 Aligned_cols=89 Identities=19% Similarity=0.349 Sum_probs=77.0
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-ceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
|+|+|++|++|++.+..+. +||||++.++ .+.++|++ +++.||.|||+|+|.+..
T Consensus 2 l~v~v~~A~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~- 58 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL----------------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP- 58 (123)
T ss_pred eEEEEEEecCCCccCCCCC----------------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-
Confidence 7899999999999886654 3999999996 67889998 789999999999999976
Q ss_pred CCeEEEEEEEeCCCCCC-CceeEEEEEecccccCC
Q 005736 375 TGTVRFNLYECIPGHVK-YDYLTSCEVKMKYVADD 408 (680)
Q Consensus 375 ~~~l~l~v~d~d~~~~~-d~~lG~~~i~l~~l~~~ 408 (680)
.+.|.++|||++..+.. |++||++.+++.++...
T Consensus 59 ~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~ 93 (123)
T cd08382 59 SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPL 93 (123)
T ss_pred CCEEEEEEEECCCCCCCCCceEeEEEEEHHHcccc
Confidence 67899999999876322 68999999999998643
No 107
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.57 E-value=2.3e-14 Score=132.09 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=76.1
Q ss_pred CeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcccee
Q 005736 294 GGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSM 366 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~ 366 (680)
.|.|.|+|++|+||.+.+ ..|. +||||++.+.. .+++|++ ++++||+|||+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~----------------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~ 85 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVL----------------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQ 85 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCC----------------------cCCeEEEEEECCCccccceeceecCCCCCCccCCe
Confidence 489999999999999865 3343 39999999952 3678998 89999999999
Q ss_pred EEEEEecCCCeEEEEEE-EeCCCCCCCceeEEEEEeccccc
Q 005736 367 FNMVLHEETGTVRFNLY-ECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 367 f~~~v~~~~~~l~l~v~-d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
|.|.+......|.|+|| |++.. .++++||++.|+|+++.
T Consensus 86 F~f~v~l~~~~L~v~V~~d~~~~-~~~~~iG~~~i~L~~l~ 125 (146)
T cd04028 86 LVFDVSPTGKTLQVIVWGDYGRM-DKKVFMGVAQILLDDLD 125 (146)
T ss_pred EEEEEcCCCCEEEEEEEeCCCCC-CCCceEEEEEEEccccc
Confidence 99999855668999999 56664 58999999999999985
No 108
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.57 E-value=1.3e-14 Score=131.68 Aligned_cols=108 Identities=24% Similarity=0.364 Sum_probs=93.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc--CCCCCeeeeEEEEEeeCC-----ceEEEEEEEEecCC-
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF- 559 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~--~t~nP~wne~f~f~v~~~-----~~~L~i~V~d~~~~- 559 (680)
.|+|+|++|++|+..+..+.+||||++++++ +.++|++. ++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999888889999999999977 88999987 589999999999998875 57999999999886
Q ss_pred CCceeEEEEEEcccccCCCe-----eeEEEeCCCC---CCeEEEE
Q 005736 560 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELRL 596 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~i~l 596 (680)
++++||++.++|.++..+.. ...||+|.+. ..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 89999999999999885443 4789999863 3577653
No 109
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.56 E-value=5.7e-14 Score=129.09 Aligned_cols=111 Identities=18% Similarity=0.387 Sum_probs=95.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE-Eeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-----C
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----G 560 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-----~ 560 (680)
..|.|.|++|++|+.++ +|||++.+++.. .||+++ ++.||.|+|.|.|.+......+.|.||+.+.. +
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccC
Confidence 47999999999998755 799999998866 699999 99999999999998776667899999865532 5
Q ss_pred CceeEEEEEEcccccCCCeeeEEEeCCCCC-------------CeEEEEEEEEEEe
Q 005736 561 DENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRV 603 (680)
Q Consensus 561 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~i~l~l~~~~~ 603 (680)
+.+||.+.|++.++..+...+.||+|.+.. .++|+++++|.+.
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 789999999999999888899999997532 2689999999854
No 110
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.56 E-value=1.7e-14 Score=127.74 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=77.6
Q ss_pred EEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCcc-ceeEEEEEec
Q 005736 297 VYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRW-DSMFNMVLHE 373 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~W-ne~f~~~v~~ 373 (680)
|.|+|++|++|++++. .|. +||||++.+++..++|++ ++++||.| ||+|.|.+..
T Consensus 1 l~V~v~~a~~L~~~d~~~~~----------------------~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~ 58 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL----------------------TDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDD 58 (110)
T ss_pred CEEEEEEEECCCccccCCCC----------------------CCceEEEEECCeeEecceecCCCCCcccCcEEEEEcCh
Confidence 6899999999998874 343 399999999999999998 79999999 9999999876
Q ss_pred C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 374 E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 374 ~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
. .+.|.|+|||+|.. ++|++||++.+++.++..
T Consensus 59 ~~l~~~~l~i~V~d~d~~-~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 59 EELQDEPLQIRVMDHDTY-SANDAIGKVYIDLNPLLL 94 (110)
T ss_pred HHcCCCeEEEEEEeCCCC-CCCCceEEEEEeHHHhcc
Confidence 3 46899999999986 589999999999999975
No 111
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.56 E-value=3.3e-14 Score=129.32 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=78.2
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCcc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRW 363 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~W 363 (680)
.+.+..+.|+|+|++|++|+..+.. |. +||||++.+. .+.++|++ +++.||+|
T Consensus 10 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~----------------------~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w 67 (128)
T cd08388 10 RYNSEKKALLVNIIECRDLPAMDEQSGT----------------------SDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67 (128)
T ss_pred EEECCCCEEEEEEEEeECCCCCCCCCCC----------------------cCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence 3344458999999999999998764 43 4999999985 44678998 79999999
Q ss_pred ceeEEEE-Eec--C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 364 DSMFNMV-LHE--E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 364 ne~f~~~-v~~--~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
||+|.|. +.. . ...|.++|||+|.. ++|++||++.++|+++..
T Consensus 68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~-~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 68 DETFTFYGIPYNQLQDLSLHFAVLSFDRY-SRDDVIGEVVCPLAGADL 114 (128)
T ss_pred eeEEEEcccCHHHhCCCEEEEEEEEcCCC-CCCceeEEEEEeccccCC
Confidence 9999993 442 2 34699999999986 689999999999999853
No 112
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.55 E-value=8.7e-14 Score=127.44 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=81.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~--~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~ 558 (680)
..|.|+|++|+||+..+..+.+||||++++ ++ .+.+|+++ ++.||+|||+|.|.+.. .+..|.|+|||++.
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 379999999999999988899999999999 22 36689999 99999999999999875 36789999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
. ++++||++.+.... .+...++|..+.
T Consensus 95 ~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 95 DGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred CCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 7 89999999998764 233344555443
No 113
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.55 E-value=6.5e-14 Score=128.79 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=89.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
.|+|+|++|++|+..|..|.+ ||||++.++++..+|++ +++.||.|||+|.|.+...
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~ 59 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLS----------------------DPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVEL 59 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCC----------------------CCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeec
Confidence 589999999999998876653 99999999999999998 7999999999999975321
Q ss_pred ----------CCeEEEEEEEeCCCCCCCceeEEEEE-ecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-
Q 005736 375 ----------TGTVRFNLYECIPGHVKYDYLTSCEV-KMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV- 442 (680)
Q Consensus 375 ----------~~~l~l~v~d~d~~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~- 442 (680)
...|.|+|||+|.. ++|++||++.+ ++..+.... .+.....|++|...
T Consensus 60 ~~~~~~~~~~~~~l~v~V~d~d~~-~~d~~iG~~~i~~~~~~~~~~-------------------~~~~~~~W~~L~~~~ 119 (135)
T cd04017 60 YGSPEEIAQNPPLVVVELFDQDSV-GKDEFLGRSVAKPLVKLDLEE-------------------DFPPKLQWFPIYKGG 119 (135)
T ss_pred cCChHHhhcCCCEEEEEEEeCcCC-CCCccceEEEeeeeeecccCC-------------------CCCCCceEEEeecCC
Confidence 24699999999986 68999999987 443332110 02244568887533
Q ss_pred -ceeeEEEEEEEe
Q 005736 443 -NSGELTVRLVLK 454 (680)
Q Consensus 443 -~~G~l~~~l~l~ 454 (680)
..|+|.+++.+.
T Consensus 120 ~~~Geil~~~~~~ 132 (135)
T cd04017 120 QSAGELLAAFELI 132 (135)
T ss_pred CchhheeEEeEEE
Confidence 369999887654
No 114
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.55 E-value=3.4e-14 Score=128.93 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=78.5
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~ 362 (680)
.+.+..|.|.|+|++|++|++.+..+. +||||++.+.. ..++|++ +++.||+
T Consensus 10 ~~~~~~~~L~V~vi~a~~L~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd04031 10 WYDKVTSQLIVTVLQARDLPPRDDGSL----------------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE 67 (125)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCC----------------------CCCEEEEEEccCCCccccccccccCCCCCCc
Confidence 334445999999999999999886554 39999999864 5678888 7999999
Q ss_pred cceeEEEEEec----CCCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736 363 WDSMFNMVLHE----ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 405 (680)
Q Consensus 363 Wne~f~~~v~~----~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l 405 (680)
|||+|.|.+.. ....|.|+|||++.. .++++||++.++|++.
T Consensus 68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~-~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 68 WNQTFEYSNVRRETLKERTLEVTVWDYDRD-GENDFLGEVVIDLADA 113 (125)
T ss_pred cccEEEEcccCHHHhCCCEEEEEEEeCCCC-CCCcEeeEEEEecccc
Confidence 99999998644 246799999999986 5899999999999984
No 115
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.55 E-value=4.3e-14 Score=127.43 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=77.3
Q ss_pred cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736 293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
..|.|+|+|++|++|+. +..+. +||||+|.++++.++|++ +++.||+|||+|.|..
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~----------------------~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~ 82 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTS----------------------TDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGS 82 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCC----------------------CCeEEEEEECCccccCceecCCCCCcCCCEEEEec
Confidence 35999999999999974 44343 399999999999999998 8999999999999975
Q ss_pred ec--CCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 372 HE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 372 ~~--~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
.. ..+.|.|+|||+|.. ++|++||++.++|....
T Consensus 83 ~~~~~~~~L~v~V~D~d~~-s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 83 VELSPGGKLRFEVWDRDNG-WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred ccCCCCCEEEEEEEeCCCC-CCCCeeEEEEEEecCCc
Confidence 44 357899999999986 69999999999999764
No 116
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=2.6e-14 Score=130.84 Aligned_cols=86 Identities=20% Similarity=0.285 Sum_probs=75.1
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEe
Q 005736 488 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNE 556 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~--~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~ 556 (680)
+.|.|.|++|+||...+. .+.+||||+|++.. .+.+|+++ ++.||+|||+|.|.+.. .+..|.|+|||+
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~ 94 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ 94 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence 489999999999998873 35589999999922 36789999 99999999999999886 367899999999
Q ss_pred cCC-CCceeEEEEEEccc
Q 005736 557 EIF-GDENMGSARVNLEG 573 (680)
Q Consensus 557 ~~~-~d~~iG~~~i~L~~ 573 (680)
+.. ++++||++.+++..
T Consensus 95 d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 95 DSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCcCcceeceEEecCcC
Confidence 988 89999999999875
No 117
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.55 E-value=4e-14 Score=131.36 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=72.5
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeEEEE
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMFNMV 370 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f~~~ 370 (680)
|.|+|++|++|.. ..|. +||||++.+.. +.++|++ +++.||+|||+|.|.
T Consensus 2 L~V~Vi~ArnL~~--~~g~----------------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~ 57 (148)
T cd04010 2 LSVRVIECSDLAL--KNGT----------------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD 57 (148)
T ss_pred EEEEEEeCcCCCC--CCCC----------------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE
Confidence 7899999999998 3343 39999999975 6778998 789999999999999
Q ss_pred Ee---------------cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 371 LH---------------EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 371 v~---------------~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+. +. ...|.+.|||++.. .+|++||++.|++.++..
T Consensus 58 v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-~~ddfLG~v~i~l~~l~~ 109 (148)
T cd04010 58 VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-GGDVFLGEVRIPLRGLDL 109 (148)
T ss_pred EecccccccccccCCcccccEEEEEEEEEcCCCC-CCCceeEEEEEecccccc
Confidence 85 11 23689999999875 689999999999999864
No 118
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.54 E-value=4.8e-14 Score=127.79 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=79.4
Q ss_pred ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccce
Q 005736 290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDS 365 (680)
Q Consensus 290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne 365 (680)
+....|.|.|+|++|++|++.+..|. +||||++.+. ...++|++ +++.||+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~----------------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne 68 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGT----------------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 68 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCC----------------------CCCEEEEEEEcCCCCceecccCcCCCCCceee
Confidence 33445999999999999999886654 3999999985 24678888 7899999999
Q ss_pred eEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 366 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 366 ~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
+|.|.+... ...|.|+|||+|.. .+|++||++.+++.++.
T Consensus 69 ~f~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~~~ 111 (124)
T cd08385 69 TFTFKVPYSELGNKTLVFSVYDFDRF-SKHDLIGEVRVPLLTVD 111 (124)
T ss_pred eEEEeCCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEEecCccc
Confidence 999998752 45799999999986 68999999999999885
No 119
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.54 E-value=1e-13 Score=125.95 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=92.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCccceeEEEEE
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
.|.|+|++|++|+..+..+. +||||++.++. ..++|++ +++.||.|||+|.|.+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~----------------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i 59 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL----------------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEV 59 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC----------------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEc
Confidence 58899999999999886554 39999998763 3678888 7899999999999999
Q ss_pred ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736 372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR 450 (680)
Q Consensus 372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~ 450 (680)
... .+.|.|+|||+|.. .++++||++.++|..+.... .|...+.|+++.+ .|++++.
T Consensus 60 ~~~~~~~L~i~v~d~d~~-~~~~~iG~~~i~l~~~~~~~-------------------~~~~~~~w~~l~~--~g~i~l~ 117 (126)
T cd04043 60 PAGEPLWISATVWDRSFV-GKHDLCGRASLKLDPKRFGD-------------------DGLPREIWLDLDT--QGRLLLR 117 (126)
T ss_pred CCCCCCEEEEEEEECCCC-CCCceEEEEEEecCHHHcCC-------------------CCCCceEEEEcCC--CCeEEEE
Confidence 875 56899999999986 58999999999998763211 0234578999865 5888888
Q ss_pred EEEe
Q 005736 451 LVLK 454 (680)
Q Consensus 451 l~l~ 454 (680)
+.+.
T Consensus 118 ~~~~ 121 (126)
T cd04043 118 VSME 121 (126)
T ss_pred EEEe
Confidence 7664
No 120
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.54 E-value=1.2e-13 Score=128.36 Aligned_cols=113 Identities=24% Similarity=0.317 Sum_probs=93.7
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeCC---------ceEEEEE
Q 005736 490 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK 552 (680)
Q Consensus 490 L~V~I~~a~~--L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~~---------~~~L~i~ 552 (680)
..++|..|++ |+..+..+.+||||++++ +.++.+|+++ +|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566666666 667777788999999997 3479999999 999999999999998643 3579999
Q ss_pred EEEecCC--CCceeEEEEEEcccccCCCeeeEEEeCCC---CCCeEEEEEEEEEE
Q 005736 553 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEK---VNTGELRLQIEATR 602 (680)
Q Consensus 553 V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~---~~~G~i~l~l~~~~ 602 (680)
|||++.+ +|++||++.++|+.+..+.....|++|.. ..+|+|++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 9999986 69999999999999987766778999864 23699999998763
No 121
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.54 E-value=4.2e-14 Score=125.47 Aligned_cols=87 Identities=22% Similarity=0.320 Sum_probs=75.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
-.|+|+|++|++|+ .|. +||||+++++++.++|++ +++.||.|||+|.|.+..
T Consensus 4 ~~l~V~v~~a~~L~----~~~----------------------~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 57 (111)
T cd04011 4 FQVRVRVIEARQLV----GGN----------------------IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHE 57 (111)
T ss_pred EEEEEEEEEcccCC----CCC----------------------CCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCC
Confidence 36899999999998 233 399999999999999998 789999999999999764
Q ss_pred C-----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 374 E-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 374 ~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
. ...|.|+|||++.. ++|++||++.++|+++...
T Consensus 58 ~~~~l~~~~l~i~V~d~~~~-~~~~~iG~~~i~l~~v~~~ 96 (111)
T cd04011 58 SPDELFDKIIKISVYDSRSL-RSDTLIGSFKLDVGTVYDQ 96 (111)
T ss_pred CHHHHhcCeEEEEEEcCccc-ccCCccEEEEECCccccCC
Confidence 3 35799999999876 5899999999999998643
No 122
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.54 E-value=3.2e-14 Score=127.55 Aligned_cols=90 Identities=14% Similarity=0.307 Sum_probs=76.0
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMF 367 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f 367 (680)
.|.|.|+|++|+||++.+ .|. +||||++.+.. ..++|++ +++.||+|||+|
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~----------------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F 67 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGT----------------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETF 67 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCC----------------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEE
Confidence 489999999999999887 554 39999999973 3568888 799999999999
Q ss_pred EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
.|.+... ...|.|.|||++.....+++||++.|++.++.
T Consensus 68 ~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 68 SFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred EEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 9998653 35689999999875335799999999999986
No 123
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.54 E-value=5.2e-14 Score=127.54 Aligned_cols=91 Identities=18% Similarity=0.382 Sum_probs=79.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEEe
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVLH 372 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v~ 372 (680)
|.|.|+|.+|++|++.+..+. +||||++.++++..+|++ + ++.||.|||+|.|.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~ 58 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK----------------------IDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVE 58 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC----------------------cCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEec
Confidence 789999999999998876553 399999999988888887 5 4899999999999998
Q ss_pred cC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 373 EE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 373 ~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.. .+.|.|+|||.+.. .+|++||++.++++++..+
T Consensus 59 ~~~~~~~~~l~v~V~d~~~~-~~d~~iG~~~i~l~~l~~~ 97 (124)
T cd04049 59 YPGWGGDTKLILRIMDKDNF-SDDDFIGEATIHLKGLFEE 97 (124)
T ss_pred CcccCCCCEEEEEEEECccC-CCCCeEEEEEEEhHHhhhC
Confidence 76 46799999999886 5899999999999998653
No 124
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=7.9e-14 Score=124.54 Aligned_cols=100 Identities=30% Similarity=0.492 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCceeE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.+|.|||+|.|.+.. ....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999888888999999999954 66899999 99999999999999886 467899999999987 899999
Q ss_pred EEEEEcccccCCCeeeEEEeCCCC
Q 005736 566 SARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
++.+++.++..+.....|++|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999888888999999864
No 125
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.54 E-value=4.1e-14 Score=131.68 Aligned_cols=97 Identities=28% Similarity=0.468 Sum_probs=85.5
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------EEEeeecc-CCCCCeee
Q 005736 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----------------------------IVQRTRTA-HSPNHVWN 535 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----------------------------~~~~T~~~-~t~nP~wn 535 (680)
..+.|.|+|++|+||...+..|.+||||++.++. ..++|+++ ++.||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 3569999999999999999899999999999842 24789999 99999999
Q ss_pred eEEEEEeeCC-ceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeC
Q 005736 536 QKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL 586 (680)
Q Consensus 536 e~f~f~v~~~-~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 586 (680)
|+|.|.+... ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999763 678999999997 8899999999999883 456899987
No 126
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.53 E-value=5.8e-14 Score=129.87 Aligned_cols=90 Identities=33% Similarity=0.557 Sum_probs=83.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|.|+|+|++|+||+..+. +.+||||+++++++.++|+++ ++.||.|||+|.|.+.++...|.|+|||++.+ +|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 589999999999998886 889999999999999999999 99999999999999998888999999999988 899999
Q ss_pred EEEEEcccccCCC
Q 005736 566 SARVNLEGLVEGS 578 (680)
Q Consensus 566 ~~~i~L~~l~~~~ 578 (680)
++.+++.++....
T Consensus 81 ~a~i~l~~l~~~~ 93 (145)
T cd04038 81 EAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEHHHhhhhh
Confidence 9999999987543
No 127
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=4.6e-14 Score=129.84 Aligned_cols=100 Identities=26% Similarity=0.529 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CEEEeeecc-CCCCCeeeeEEEEEeeCC----------------ceE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC 548 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~----~~~~~T~~~-~t~nP~wne~f~f~v~~~----------------~~~ 548 (680)
|+|+|++|++|..+ ..+.+||||+++++ +..++|+++ ++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999887 67899999999997 788999999 999999999999997653 458
Q ss_pred EEEEEEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736 549 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 590 (680)
Q Consensus 549 L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~ 590 (680)
|.|+|||++.. ++++||++.++|.++........||+|.+.+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999988 8999999999999988777788999998753
No 128
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=7.6e-14 Score=125.41 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=80.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEe
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
|+|+|+|++|++|++.+..+. +||||.+.+++ ...+|++ +++.||.|||+|.|.+.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~----------------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~ 58 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK----------------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT 58 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC----------------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec
Confidence 789999999999999886554 39999999976 4678887 78999999999999988
Q ss_pred cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
...+.|.|+|||++.. .+|++||++.+++.++...
T Consensus 59 ~~~~~L~v~v~d~~~~-~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 59 SPNQKITLEVMDYEKV-GKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCCCEEEEEEEECCCC-CCCCeeeEEEEeHHHhhCC
Confidence 8778999999999986 5899999999999999754
No 129
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.52 E-value=1.5e-13 Score=123.03 Aligned_cols=105 Identities=29% Similarity=0.474 Sum_probs=85.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-CCce
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDEN 563 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-~d~~ 563 (680)
|.|+|++|+||+.. +.+||||+++++++ .++|+++ + .||.|||+|.|.+.. ....|.+.+||.+.. .+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999875 78999999999874 5899999 9 999999999999886 346788889998765 5566
Q ss_pred eEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEE
Q 005736 564 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 600 (680)
Q Consensus 564 iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~ 600 (680)
+|.+. +..+..+...+.||+|.+.. .|+|++.+.|
T Consensus 78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66655 45555566778999998643 6999998865
No 130
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.52 E-value=8e-14 Score=125.45 Aligned_cols=96 Identities=16% Similarity=0.243 Sum_probs=80.3
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc------ceeeeecc-CCCCCC
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDA-RPGSDP 361 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~------~~~~~T~v-~~t~nP 361 (680)
.+.+..|.|.|+|++|+||++.+..|. +||||++.+- ...++|++ +++.||
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~----------------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nP 65 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPEN----------------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKP 65 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCC----------------------CCeEEEEEEccCCCCCCceEEcCccCCCCCC
Confidence 444556999999999999999875554 3999999974 23678998 799999
Q ss_pred ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+|||+|.|.+... ...|.|.|||++.. +++++||++.|+|+++..
T Consensus 66 vfnE~F~f~v~~~~L~~~~L~~~V~~~~~~-~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 66 VFNEVFRVPISSTKLYQKTLQVDVCSVGPD-QQEECLGGAQISLADFES 113 (124)
T ss_pred ccccEEEEECCHHHhhcCEEEEEEEeCCCC-CceeEEEEEEEEhhhccC
Confidence 9999999998753 45799999999876 689999999999999853
No 131
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=6.4e-14 Score=130.21 Aligned_cols=103 Identities=8% Similarity=0.135 Sum_probs=79.5
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC-
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE- 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~- 374 (680)
|.|+|++|++|+++|..+....++ . . ..-....+||||++.++++..+|++ +++.||+|||+|.|.+...
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~-~-~------~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~ 73 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKK-A-F------LGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPP 73 (151)
T ss_pred eEEEEEEeCCCCccChhhhcccee-c-c------ccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCC
Confidence 789999999999998544100000 0 0 0000113599999999999999998 8999999999999997643
Q ss_pred -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.+.|.|+|||+|.. ++|++||++.+++.++...
T Consensus 74 ~~~~l~~~v~D~d~~-~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 74 LCERIKIQIRDWDRV-GNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred cCCEEEEEEEECCCC-CCCCEEEEEEEeHHHhccC
Confidence 56899999999986 5999999999999998643
No 132
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.52 E-value=7.5e-14 Score=129.89 Aligned_cols=89 Identities=15% Similarity=0.309 Sum_probs=77.0
Q ss_pred cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc----------------------
Q 005736 291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---------------------- 348 (680)
Q Consensus 291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---------------------- 348 (680)
.++.+.|.|+|++|++|.+.|..|.+ ||||++.++.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFS----------------------DPYCMLGIVPASRERNSEKSKKRKSHRKKAVL 81 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCC----------------------CceEEEEEcccccccccccccccccccccccc
Confidence 45679999999999999999876653 9999999863
Q ss_pred -------eeeeecc-CCCCCCccceeEEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 349 -------LTRRTDA-RPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 349 -------~~~~T~v-~~t~nP~Wne~f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
...+|.+ ++++||.|||+|.|.+.+. .+.|.|+|||++ |++||++.+++.++.
T Consensus 82 ~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 82 KDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLP 143 (153)
T ss_pred cccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhC
Confidence 2367887 7899999999999999875 578999999976 799999999999986
No 133
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=1.4e-13 Score=126.26 Aligned_cols=89 Identities=19% Similarity=0.417 Sum_probs=79.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CEEEeeecc-CCCCCeeeeEEEEEeeC-----CceEEEEEEE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA-HSPNHVWNQKFELDEIG-----GGECLMVKCY 554 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-------~~~~~T~~~-~t~nP~wne~f~f~v~~-----~~~~L~i~V~ 554 (680)
+.|.|+|++|++|+..+..+.+||||+|++. ...++|+++ ++.||.|||+|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 3799999999999998888999999999994 357899999 99999999999999875 2458999999
Q ss_pred EecCC-CCceeEEEEEEcccccC
Q 005736 555 NEEIF-GDENMGSARVNLEGLVE 576 (680)
Q Consensus 555 d~~~~-~d~~iG~~~i~L~~l~~ 576 (680)
|++.. ++++||++.++|+++..
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCc
Confidence 99988 79999999999999873
No 134
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.52 E-value=3.8e-14 Score=129.76 Aligned_cols=73 Identities=23% Similarity=0.171 Sum_probs=64.9
Q ss_pred CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccC--CCCCCCEEEEEECC-----eEEeeeeeecCCC
Q 005736 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKLTVACLS 663 (680)
Q Consensus 591 ~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~--~g~~DPyV~v~lg~-----~~~kT~~~k~tln 663 (680)
.|+|+++++|. +..+.|.|.|++|+||+.++. .+.+||||+|++.. .++||+++++++|
T Consensus 1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n 66 (138)
T cd08407 1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN 66 (138)
T ss_pred CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence 49999999998 888999999999999999983 35599999999953 3779999999999
Q ss_pred CcccceeEEEecCC
Q 005736 664 GHIQNSKSSMASNL 677 (680)
Q Consensus 664 P~wnE~f~f~V~n~ 677 (680)
|+|||+|.|.|...
T Consensus 67 PvfNE~f~F~v~~~ 80 (138)
T cd08407 67 PVWNEMIMFELPSE 80 (138)
T ss_pred CccccEEEEECCHH
Confidence 99999999999763
No 135
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.51 E-value=5.4e-14 Score=133.04 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=79.3
Q ss_pred cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccc
Q 005736 291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWD 364 (680)
Q Consensus 291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wn 364 (680)
....|.|.|+|++|++|++.+..|. +||||++.+. ...++|++ +++.||+||
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~----------------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGT----------------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCC----------------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 3457999999999999999886554 3999999883 35789998 799999999
Q ss_pred eeEEEEEec---C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 365 SMFNMVLHE---E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 365 e~f~~~v~~---~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
|+|.|.+.. . ...|.|+|||+|.. ++|++||++.++++++...
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~-~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKL-SSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCC-CCCceEEEEEEeCCccccC
Confidence 999998532 2 34799999999986 5899999999999998643
No 136
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.51 E-value=5.7e-14 Score=129.42 Aligned_cols=99 Identities=23% Similarity=0.348 Sum_probs=85.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|+||+..+..+.+||||++++. + ...+|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 3799999999999999888999999999982 2 36789999 99999999999999875 35679999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
. ++++||++.+++.. .+....+|++|..
T Consensus 95 ~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 95 VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 8 89999999999998 3445678888754
No 137
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=1.6e-13 Score=124.44 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=79.5
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWD 364 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wn 364 (680)
.+....+.|.|+|++|++|+..+..+. +||||++.+. ....+|++ +++.||.||
T Consensus 10 ~y~~~~~~L~v~v~~a~~L~~~d~~~~----------------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 10 SYDFQESTLTLKILKAVELPAKDFSGT----------------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67 (125)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCC----------------------CCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence 334456899999999999999886654 3999999983 46788998 799999999
Q ss_pred eeEEEEEec---C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 365 SMFNMVLHE---E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 365 e~f~~~v~~---~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
|+|.|.+.. . ...|.++|||+|.. +++++||++.++++++..
T Consensus 68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~-~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 68 ETFLFEGFPYEKLQQRVLYLQVLDYDRF-SRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred eeEEEcccCHHHhCCCEEEEEEEeCCCC-cCCcEeeEEEEecccccC
Confidence 999997533 2 35799999999986 689999999999999863
No 138
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.50 E-value=1.3e-13 Score=125.52 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=80.4
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~ 362 (680)
.+.+..+.|.|+|++|++|+..+..+. +||||++.+. ...++|++ +++.||+
T Consensus 10 ~y~~~~~~L~V~vi~a~~L~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~ 67 (127)
T cd04030 10 RYSSQRQKLIVTVHKCRNLPPCDSSDI----------------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV 67 (127)
T ss_pred EEeCCCCEEEEEEEEEECCCCccCCCC----------------------CCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence 344455999999999999999986554 3999999985 35789998 7899999
Q ss_pred cceeEEEEEecC---CCeEEEEEEEeCCCC-CCCceeEEEEEecccccC
Q 005736 363 WDSMFNMVLHEE---TGTVRFNLYECIPGH-VKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~-~~d~~lG~~~i~l~~l~~ 407 (680)
|||+|.|.+... ...|.+.|||.+... ++|++||++.++|.++..
T Consensus 68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL 116 (127)
T ss_pred ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc
Confidence 999999998653 467999999988641 489999999999999853
No 139
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.50 E-value=1.6e-13 Score=123.82 Aligned_cols=88 Identities=26% Similarity=0.381 Sum_probs=78.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEEEEEecCC-CCc
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF-GDE 562 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~-~d~ 562 (680)
.+.|+|+|++|++|+. +..+.+||||+|+++++.++|+++ ++.||+|||+|.|.... ....|.|+|||++.. +|+
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd 105 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD 105 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence 4699999999999974 566889999999999899999999 99999999999997433 477999999999988 999
Q ss_pred eeEEEEEEccccc
Q 005736 563 NMGSARVNLEGLV 575 (680)
Q Consensus 563 ~iG~~~i~L~~l~ 575 (680)
+||++.++|....
T Consensus 106 ~IG~~~i~l~~~~ 118 (127)
T cd04032 106 LLGTCSVVPEAGV 118 (127)
T ss_pred eeEEEEEEecCCc
Confidence 9999999999765
No 140
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=3.9e-13 Score=122.35 Aligned_cols=108 Identities=15% Similarity=0.304 Sum_probs=87.3
Q ss_pred EEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC---CC
Q 005736 301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE---TG 376 (680)
Q Consensus 301 v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~---~~ 376 (680)
|++|++|++ ..|. +||||++.+++..++|++ +++.||+|||+|.|.+... .+
T Consensus 2 vi~a~~L~~--~~g~----------------------~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~ 57 (127)
T cd08373 2 VVSLKNLPG--LKGK----------------------GDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57 (127)
T ss_pred eEEeeCCcc--cCCC----------------------CCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCC
Confidence 678999988 3443 399999999999999998 7999999999999999753 57
Q ss_pred eEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----eeeEEEEEE
Q 005736 377 TVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SGELTVRLV 452 (680)
Q Consensus 377 ~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G~l~~~l~ 452 (680)
.|.|+|||++.. .+|++||++.++++++... .....|++|.+.+ .|++++++.
T Consensus 58 ~l~~~v~d~~~~-~~d~~iG~~~~~l~~l~~~----------------------~~~~~~~~L~~~~~~~~~~~l~l~~~ 114 (127)
T cd08373 58 SLEIVVKDYEKV-GRNRLIGSATVSLQDLVSE----------------------GLLEVTEPLLDSNGRPTGATISLEVS 114 (127)
T ss_pred EEEEEEEECCCC-CCCceEEEEEEEhhHcccC----------------------CceEEEEeCcCCCCCcccEEEEEEEE
Confidence 899999999986 5899999999999998643 2345677775332 578888886
Q ss_pred Eee
Q 005736 453 LKE 455 (680)
Q Consensus 453 l~~ 455 (680)
+.+
T Consensus 115 ~~~ 117 (127)
T cd08373 115 YQP 117 (127)
T ss_pred EeC
Confidence 643
No 141
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.50 E-value=1.5e-13 Score=124.38 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=78.3
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeeccCCCCCCccce
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDARPGSDPRWDS 365 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v~~t~nP~Wne 365 (680)
.+.+..+.|.|+|++|+||++.+..|. .||||.+.+. .+.++|+++++.||+|||
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~----------------------~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE 67 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGA----------------------SSWQVHLVLLPSKKQRAKTKVQRGPNPVFNE 67 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCC----------------------CCcEEEEEEccCCcceeecccccCCCCcccC
Confidence 444556899999999999999986554 3999998763 457788884449999999
Q ss_pred eEEEE-EecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 366 MFNMV-LHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 366 ~f~~~-v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+|.|. +... ...|.|.|||++.. +++++||++.++|+++..
T Consensus 68 ~F~f~~i~~~~l~~~~L~~~V~~~~~~-~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 68 TFTFSRVEPEELNNMALRFRLYGVERM-RKERLIGEKVVPLSQLNL 112 (124)
T ss_pred EEEECCCCHHHhccCEEEEEEEECCCc-ccCceEEEEEEeccccCC
Confidence 99998 6542 45799999999986 689999999999999954
No 142
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.50 E-value=1.8e-13 Score=123.83 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=78.7
Q ss_pred cccCcCeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCC
Q 005736 289 RKKAVGGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDP 361 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP 361 (680)
.+....|.|.|+|++|++|+..+ ..+. +||||++.+.. ..++|++ +++.||
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P 65 (123)
T cd08521 8 SYNYKTGSLEVHIKECRNLAYADEKKKR----------------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNP 65 (123)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCC----------------------CCcEEEEEEecCCCcCceeeccccCCCCCC
Confidence 33345599999999999999987 4443 39999998841 4578888 789999
Q ss_pred ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
+|||+|.|.+... ...|.|+|||++.. +++++||++.++|+++.
T Consensus 66 ~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 66 VFNETLKYHISKSQLETRTLQLSVWHHDRF-GRNTFLGEVEIPLDSWD 112 (123)
T ss_pred cccceEEEeCCHHHhCCCEEEEEEEeCCCC-cCCceeeEEEEeccccc
Confidence 9999999998763 45799999999876 58999999999999985
No 143
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.50 E-value=4.2e-13 Score=123.68 Aligned_cols=99 Identities=21% Similarity=0.348 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|++|+..+..+.+||||++++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 4899999999999998888999999999993 2 46789999 999999999999998743 3489999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
. ++++||++.+++... +.....|+++-.
T Consensus 95 ~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 95 IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 8 889999999999763 333455655543
No 144
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.50 E-value=2.2e-13 Score=123.26 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=79.5
Q ss_pred cccCcCeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCcc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRW 363 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~W 363 (680)
++....+.|.|+|++|++|+..+ ..+. +||||++.+. ...++|++ +++.||+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~----------------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~w 65 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAH----------------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNF 65 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCC----------------------CCcEEEEEEeeCCCCceEeeeEcCCCCCcc
Confidence 44445689999999999999987 3443 4999999984 34678887 79999999
Q ss_pred ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
||+|.|.+... ...|.|.|||++.. +++++||++.++|+++..
T Consensus 66 ne~f~f~i~~~~l~~~~l~i~v~d~~~~-~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 66 DETFVFQVSFKELQRRTLRLSVYDVDRF-SRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred ceEEEEEcCHHHhcccEEEEEEEECCcC-CCCcEEEEEEEeccceec
Confidence 99999998763 34799999999885 589999999999999864
No 145
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.50 E-value=1.5e-13 Score=125.82 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=76.3
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~ 362 (680)
.+.+..+.|.|+|++|+||+..|..|. +||||++.+.. .+++|++ ++++||+
T Consensus 9 ~Y~~~~~~L~V~Vi~A~nL~~~~~~g~----------------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~ 66 (136)
T cd08406 9 SYLPTAERLTVVVVKARNLVWDNGKTT----------------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPI 66 (136)
T ss_pred EEcCCCCEEEEEEEEeeCCCCccCCCC----------------------CCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence 344445899999999999999886554 39999999842 2567887 7999999
Q ss_pred cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
|||+|.|.+... ...|.|+|||+|.. +++++||++.+....
T Consensus 67 ~nE~f~F~v~~~~l~~~~l~~~V~~~d~~-~~~~~iG~v~lg~~~ 110 (136)
T cd08406 67 FNEAMIFSVPAIVLQDLSLRVTVAESTED-GKTPNVGHVIIGPAA 110 (136)
T ss_pred eceeEEEECCHHHhCCcEEEEEEEeCCCC-CCCCeeEEEEECCCC
Confidence 999999998753 45799999999986 699999999997654
No 146
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.50 E-value=4.4e-13 Score=121.23 Aligned_cols=99 Identities=26% Similarity=0.425 Sum_probs=84.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~ 557 (680)
+.|.|+|++|++|+..+..+.+||||++++. ....+|+++ ++.||.|||+|.|.... ....+.|+|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~ 94 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDED 94 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcC
Confidence 4899999999999988888899999999982 257899999 99999999999996432 2468999999998
Q ss_pred CCCCceeEEEEEEcccccCCCeeeEEEeC
Q 005736 558 IFGDENMGSARVNLEGLVEGSVRDIWVPL 586 (680)
Q Consensus 558 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L 586 (680)
..++++||++.++|+++..++....|+.|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 95 RFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 76788999999999999887776666543
No 147
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.49 E-value=1.7e-13 Score=124.29 Aligned_cols=90 Identities=20% Similarity=0.391 Sum_probs=78.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-C-CCCCCccceeEEEEEe
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-R-PGSDPRWDSMFNMVLH 372 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~-~t~nP~Wne~f~~~v~ 372 (680)
.|+|+|++|++|+..+..+. +||||++.++. +..+|++ + ++.||.|||+|.|.+.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~----------------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~ 58 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK----------------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLD 58 (125)
T ss_pred CEEEEEEEcccCCCCCcccC----------------------CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcC
Confidence 38999999999998875553 39999999987 8889987 4 5899999999999998
Q ss_pred cC-----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 373 EE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 373 ~~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
+. ...|.|+|||++.. .+|++||++.+++.++...
T Consensus 59 ~~~~~~~~~~l~~~v~d~~~~-~~~~~lG~~~i~l~~l~~~ 98 (125)
T cd04051 59 ERLLQQGRLALTIEVYCERPS-LGDKLIGEVRVPLKDLLDG 98 (125)
T ss_pred hHhcccCccEEEEEEEECCCC-CCCCcEEEEEEEHHHhhcc
Confidence 76 56899999999875 5899999999999999754
No 148
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.49 E-value=4.8e-13 Score=122.42 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=89.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CEEEeeecc-CCCCCee-eeEEEEEeeCCceEEEEEE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------------KIVQRTRTA-HSPNHVW-NQKFELDEIGGGECLMVKC 553 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-------------~~~~~T~~~-~t~nP~w-ne~f~f~v~~~~~~L~i~V 553 (680)
...|++++|+||+ ++..|.+||||++++. ++.++|+++ ++.||.| ||+|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4689999999998 6778999999999993 247899999 9999999 999999986 456899999
Q ss_pred EEecCC-C---CceeEEEEEEcccccCC---CeeeEEEeCCCCC-----CeEEEEEE
Q 005736 554 YNEEIF-G---DENMGSARVNLEGLVEG---SVRDIWVPLEKVN-----TGELRLQI 598 (680)
Q Consensus 554 ~d~~~~-~---d~~iG~~~i~L~~l~~~---~~~~~w~~L~~~~-----~G~i~l~l 598 (680)
||++.. + +++||++.+++.++... .....||+|+... +|+|.+.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 998653 2 79999999999998754 3467899998643 47777764
No 149
>PLN03008 Phospholipase D delta
Probab=99.49 E-value=3.7e-13 Score=151.25 Aligned_cols=101 Identities=21% Similarity=0.427 Sum_probs=90.3
Q ss_pred CCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEE
Q 005736 507 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV 584 (680)
Q Consensus 507 ~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~ 584 (680)
+.+||||+|.++++ ..||+++ ++.||+|||+|.|.+.++...|.|+|||++.+++++||++.|||+++..+...+.|+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence 46799999999764 6799999 999999999999999988889999999999987899999999999999998899999
Q ss_pred eCCCC------CCeEEEEEEEEEEecCCC
Q 005736 585 PLEKV------NTGELRLQIEATRVDDNE 607 (680)
Q Consensus 585 ~L~~~------~~G~i~l~l~~~~~~~~~ 607 (680)
+|.+. ..|+|+++++|.++....
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEccccc
Confidence 99763 358999999999887543
No 150
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.49 E-value=8.4e-14 Score=128.21 Aligned_cols=99 Identities=14% Similarity=0.231 Sum_probs=81.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|+||+..+ .+.+||||++++. . ..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 48999999999999888 7889999999983 2 46789999 99999999999999874 25689999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
. ++++||++.++......+...++|..+-
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred CCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 7 8999999999976544444445565544
No 151
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.49 E-value=8.6e-14 Score=127.87 Aligned_cols=101 Identities=22% Similarity=0.407 Sum_probs=88.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|+||+..+..+.+||||++++.. ..++|+++ ++.||.|||+|.|.+... ...|.|+|||.+.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 48999999999999888888999999999943 36799999 999999999999998764 5789999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 590 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~ 590 (680)
. ++++||.+.+++++ .+...++|++|....
T Consensus 94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 6 88999999999999 555668899887654
No 152
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=3.9e-13 Score=123.85 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=81.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|+||+..+..+.+||||++++ ++ ...+|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 489999999999998888899999999998 22 46789999 99999999999999764 24689999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
. ++++||++.+++.+. +...+.|+++-
T Consensus 95 ~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred CCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 8 889999999999875 33344555543
No 153
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.49 E-value=4e-13 Score=121.75 Aligned_cols=108 Identities=25% Similarity=0.405 Sum_probs=88.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG 565 (680)
.|.|+|.+|+ |...+..+.+||||+++++++ ..+|+++ ++.||.|||.|.|.+. ..+.|.|+|||++.. .+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6999999998 544555788999999999876 8999999 9999999999999986 457899999999988 899999
Q ss_pred EEEEEcccccCCCe-----eeEEEeCCCCC------CeEEEEEE
Q 005736 566 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI 598 (680)
Q Consensus 566 ~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~i~l~l 598 (680)
++.++|.++..... ...|++|.... .|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999874322 23588886433 57776654
No 154
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.48 E-value=7e-13 Score=122.02 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=82.6
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEe
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---K---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNE 556 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~ 556 (680)
.+.|.|+|++|+||+..+..+.+||||++++. + .+.+|+++ ++.||+|||+|.|.+.. ....|.|+|||+
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 34899999999999999888999999999992 2 35799999 99999999999999875 356999999999
Q ss_pred cCC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
+.. ++++||++.+++...-. ...++|+.+.
T Consensus 94 ~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred CCCCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 987 89999999999875321 2234566553
No 155
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.1e-14 Score=144.86 Aligned_cols=175 Identities=24% Similarity=0.322 Sum_probs=141.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEE--eeCC--ceEEEEEEEEec
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELD--EIGG--GECLMVKCYNEE 557 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~--v~~~--~~~L~i~V~d~~ 557 (680)
..+..+|..|++|.+++..+..|||++..+.. .+.+|++. ++.||.|+|+-... ..+. ...+++.|+|.+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 37899999999999999999999999999832 45888999 99999999875554 3332 557889999999
Q ss_pred CC-CCceeEEEEEEcccccCCCee--eEEEeCC----C------CCCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEE
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVR--DIWVPLE----K------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELV 624 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~--~~w~~L~----~------~~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~ 624 (680)
.+ .++++|+..+++..+...+.. ..|+.-+ . ...|++.+++.|- ....-+.|.
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt 238 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVT 238 (362)
T ss_pred ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEE
Confidence 88 889999999888877643321 2232211 0 2368898988775 455679999
Q ss_pred EEEeecCccccCCCCCCCEEEEEECC-----eEEeeeeeecCCCCcccceeEEEecC
Q 005736 625 IVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKLTVACLSGHIQNSKSSMASN 676 (680)
Q Consensus 625 I~~a~~L~~~d~~g~~DPyV~v~lg~-----~~~kT~~~k~tlnP~wnE~f~f~V~n 676 (680)
+.+|.+|..+|.+|.+||||+..+.. .++||.++|+|+||+|||.|.|.+.+
T Consensus 239 ~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 239 IIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred EEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 99999999999999999999999942 48899999999999999999997754
No 156
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=2.7e-14 Score=145.97 Aligned_cols=105 Identities=30% Similarity=0.496 Sum_probs=94.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEEEEEecCC-
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF- 559 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~- 559 (680)
.|.|+|.+|+||.++|.+|.+||||++.+ +..+++|+++ .++||+|||+|.|.+.. ....|.|+|||+|..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 79999999999999999999999999999 3478899999 99999999999999875 377999999999998
Q ss_pred CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEE
Q 005736 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL 594 (680)
Q Consensus 560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 594 (680)
+++|||+.++.++++...+ .+.||.|-....|+-
T Consensus 261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGEy 294 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGEY 294 (683)
T ss_pred cccccceecccHHHHhhcc-hhhHHHHhhhhcCce
Confidence 9999999999999987554 568999987777764
No 157
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.48 E-value=2.3e-13 Score=124.87 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=78.1
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~ 362 (680)
.+.+..|.|.|+|++|++|++.|..|. +||||++.+.. ..++|++ +++.||+
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~----------------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~ 64 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDANGY----------------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPE 64 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCCCCC----------------------CCcEEEEEEEcCCCccCCceeeeEeccCCCC
Confidence 344455999999999999999887654 39999999852 3578888 7999999
Q ss_pred cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
|||+|.|.+... ...|.|+|||+|.. .+|++||++.+++..
T Consensus 65 wne~f~f~~~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~ 108 (133)
T cd08384 65 FNEEFFYDIKHSDLAKKTLEITVWDKDIG-KSNDYIGGLQLGINA 108 (133)
T ss_pred cccEEEEECCHHHhCCCEEEEEEEeCCCC-CCccEEEEEEEecCC
Confidence 999999998753 35799999999986 589999999999975
No 158
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.47 E-value=7.4e-13 Score=121.71 Aligned_cols=100 Identities=20% Similarity=0.364 Sum_probs=80.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~ 558 (680)
+.|.|+|++|++|+..+..+.+||||++++ +. ...+|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~ 93 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV 93 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 489999999999999988899999999998 22 46789999 999999999999998642 4479999999998
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
. ++++||++.+...... ....++|+.|..
T Consensus 94 ~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~ 123 (135)
T cd08410 94 KSSNDFIGRIVIGQYSSG-PSETNHWRRMLN 123 (135)
T ss_pred CCCCcEEEEEEEcCccCC-chHHHHHHHHHh
Confidence 7 8999999987654332 222356666544
No 159
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.47 E-value=9.1e-14 Score=127.58 Aligned_cols=100 Identities=22% Similarity=0.390 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 557 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~ 557 (680)
.+.|.|+|++|+||+..+..+.+||||++++. ....+|+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 35899999999999999888899999999993 257899999 999999999999998753 568999999998
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
.. ++++||++.+++.. .++...+|+++..
T Consensus 92 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 92 IGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 87 88999999999986 3445567887644
No 160
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.47 E-value=3e-13 Score=124.05 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=78.6
Q ss_pred CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-------ceeeeecc-CCCCCCcc
Q 005736 292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-------ELTRRTDA-RPGSDPRW 363 (680)
Q Consensus 292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-------~~~~~T~v-~~t~nP~W 363 (680)
...+.|+|+|++|++|++.+..|. +||||++.+. ...++|++ +++.||+|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~----------------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~w 70 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGS----------------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF 70 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCC----------------------CCCEEEEEEECCCcCccccccccccCcCCCCCcc
Confidence 345899999999999999876554 3999999986 34678888 79999999
Q ss_pred ceeEEEEEecC-----CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 364 DSMFNMVLHEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 364 ne~f~~~v~~~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
||+|.|.+... ...|.|+|||+|.. ++|++||++.++|+++.
T Consensus 71 nE~f~f~i~~~~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 71 DESFEFNVPPEQCSVEGALLLFTVKDYDLL-GSNDFEGEAFLPLNDIP 117 (133)
T ss_pred CCEEEEEechhhcccCCCEEEEEEEecCCC-CCCcEeEEEEEeHHHCC
Confidence 99999998752 34799999999986 58999999999999986
No 161
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=6.4e-13 Score=119.93 Aligned_cols=88 Identities=16% Similarity=0.306 Sum_probs=75.1
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--EEEeeecc-CCC-CCeeeeEEEEEeeCC--ceEEEEEEEEe
Q 005736 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNE 556 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~--~~~~T~~~-~t~-nP~wne~f~f~v~~~--~~~L~i~V~d~ 556 (680)
+.+.|.|.|++|+||++.+..+.+||||+|++ ++ .+.+|+++ +|. ||.|||+|.|.+..+ +..|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 44689999999999998765677899999998 22 57889999 885 699999999999863 45788999999
Q ss_pred cCC-CCceeEEEEEEccc
Q 005736 557 EIF-GDENMGSARVNLEG 573 (680)
Q Consensus 557 ~~~-~d~~iG~~~i~L~~ 573 (680)
+.. ++++||++.++.+.
T Consensus 92 ~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 92 SSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCcCCceEEEEEECCcc
Confidence 887 89999999999976
No 162
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.46 E-value=2.1e-13 Score=125.35 Aligned_cols=99 Identities=21% Similarity=0.396 Sum_probs=81.8
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 557 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~ 557 (680)
.+.|+|+|++|++|+..+..+.+||||++++. + ...+|+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 35899999999999999988999999999983 2 46789999 999999999999998642 347999999999
Q ss_pred CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
.. ++++||++.+++.. .+.....|+.+-
T Consensus 93 ~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~ 121 (134)
T cd08403 93 RVGHNELIGVCRVGPNA--DGQGREHWNEML 121 (134)
T ss_pred CCCCCceeEEEEECCCC--CCchHHHHHHHH
Confidence 88 79999999999873 233345666553
No 163
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.46 E-value=2.4e-13 Score=124.98 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=75.4
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~ 362 (680)
.+.+..|.|.|+|++|++|+..|..|. +||||++.+.. ..++|++ +++.||+
T Consensus 8 ~y~~~~~~L~V~vi~a~~L~~~d~~g~----------------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~ 65 (135)
T cd08410 8 NYLPSAGRLNVDIIRAKQLLQTDMSQG----------------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF 65 (135)
T ss_pred EECCCCCeEEEEEEEecCCCcccCCCC----------------------CCeEEEEEEEcCCcccceEcCccccCCCCCc
Confidence 344456999999999999999987664 39999999732 3568888 7999999
Q ss_pred cceeEEEEEecC--C-CeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 363 WDSMFNMVLHEE--T-GTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 363 Wne~f~~~v~~~--~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
|||+|.|.+... . ..|.|+|||+|.. .+|++||++.+....
T Consensus 66 wnE~F~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~iG~~~l~~~~ 109 (135)
T cd08410 66 YNESFSFKVPQEELENVSLVFTVYGHNVK-SSNDFIGRIVIGQYS 109 (135)
T ss_pred cceeEEEeCCHHHhCCCEEEEEEEeCCCC-CCCcEEEEEEEcCcc
Confidence 999999998642 2 3699999999986 699999999876543
No 164
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.46 E-value=4.6e-13 Score=123.40 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=77.8
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~ 362 (680)
.+.+..|.|+|+|++|++|+..+..|. +||||++.++. ..++|++ +++.||.
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 66 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGL----------------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY 66 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCC----------------------CCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence 445566999999999999999886654 39999999852 3567887 7999999
Q ss_pred cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736 363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 405 (680)
Q Consensus 363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l 405 (680)
|||+|.|.+... ...|.|+|||+|.. ++|++||++.+++...
T Consensus 67 wne~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 67 YNESFSFEVPFEQIQKVHLIVTVLDYDRI-GKNDPIGKVVLGCNAT 111 (136)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEECCccC
Confidence 999999998643 23799999999986 6899999999999764
No 165
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.46 E-value=1.4e-12 Score=121.10 Aligned_cols=95 Identities=20% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCeEEEEEE-----cceeeeecc-CCCCCCccceeEEEEEecC---------CCeEEEEEEEeCCCCCCCceeEEEEEec
Q 005736 338 LTTFVEIEL-----EELTRRTDA-RPGSDPRWDSMFNMVLHEE---------TGTVRFNLYECIPGHVKYDYLTSCEVKM 402 (680)
Q Consensus 338 ~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wne~f~~~v~~~---------~~~l~l~v~d~d~~~~~d~~lG~~~i~l 402 (680)
+||||++.+ +.+..+|++ ++|+||+|||+|.|.+... ...|.|+|||++....+|++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 499999987 246889998 8999999999999999754 3469999999987545899999999999
Q ss_pred ccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC---ceeeEEEEEEEe
Q 005736 403 KYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV---NSGELTVRLVLK 454 (680)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~---~~G~l~~~l~l~ 454 (680)
+.+.... ....|++|... -.|.+++++.++
T Consensus 105 ~~l~~~~----------------------~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKC----------------------EIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred ccccccC----------------------cceEEEEhhhCCCCcCCEEEEEEEec
Confidence 9986432 23346666422 147888887664
No 166
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=4.7e-13 Score=121.10 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=75.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEccee--eeecc-CCCCCCccceeEEEEEe
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT--RRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~--~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
+|+|+|++|++|++.|..|. +||||++.++++. .+|.+ +++.||+|||+|.|.+.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~----------------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~ 58 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK----------------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT 58 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC----------------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence 58999999999999887654 3999999998764 45555 78999999999999987
Q ss_pred cC-CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
.. .+.|.|+|||+|.. ++|++||++.+++++..
T Consensus 59 ~~~~~~L~~~V~d~d~~-~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 59 LPGNSILKISVMDYDLL-GSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCEEEEEEEECCCC-CCCceeEEEEEeecccc
Confidence 55 56899999999986 59999999999998775
No 167
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.45 E-value=2.1e-13 Score=123.07 Aligned_cols=71 Identities=25% Similarity=0.193 Sum_probs=63.2
Q ss_pred eEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEEC--C---eEEeeeeeecCC-CCc
Q 005736 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKLTVACL-SGH 665 (680)
Q Consensus 592 G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg--~---~~~kT~~~k~tl-nP~ 665 (680)
.+|+++++|. |..++|+|.|++|+||++++..+.+||||||++- + .++||+++++|+ ||+
T Consensus 1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~ 66 (135)
T cd08692 1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK 66 (135)
T ss_pred CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence 3789999998 8899999999999999998777788999999983 2 589999999996 699
Q ss_pred ccceeEEEecC
Q 005736 666 IQNSKSSMASN 676 (680)
Q Consensus 666 wnE~f~f~V~n 676 (680)
|||+|.|.|..
T Consensus 67 fNEsF~Fdv~~ 77 (135)
T cd08692 67 WGETMIFPVTQ 77 (135)
T ss_pred ecceEEEeCCc
Confidence 99999999974
No 168
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.44 E-value=1.9e-12 Score=118.49 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-------------eeeeecc-CCCCCC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------------LTRRTDA-RPGSDP 361 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-------------~~~~T~v-~~t~nP 361 (680)
+..|++.+|++|+ .+..|. +||||++.+.. +.++|++ ++++||
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~----------------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 58 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN----------------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINP 58 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC----------------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCC
Confidence 4678999999998 666564 39999999952 3678888 799999
Q ss_pred cc-ceeEEEEEecCCCeEEEEEEEeCCCCC--CCceeEEEEEecccccCC
Q 005736 362 RW-DSMFNMVLHEETGTVRFNLYECIPGHV--KYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 362 ~W-ne~f~~~v~~~~~~l~l~v~d~d~~~~--~d~~lG~~~i~l~~l~~~ 408 (680)
+| ||+|.|.+. ..+.|.++|||++..+. .|++||++.+++.++...
T Consensus 59 ~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 59 VWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred ceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 99 999999985 45789999999765321 279999999999999654
No 169
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.44 E-value=5.7e-13 Score=121.94 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=88.9
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeEE
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMFN 368 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f~ 368 (680)
|.|+|+|++|++|+..+..+. +||||.+.+.. ..++|++ +++.||.|||+|.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~----------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~ 70 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGL----------------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFT 70 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCC----------------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEE
Confidence 899999999999998876553 49999999963 5788888 7899999999999
Q ss_pred EEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceee
Q 005736 369 MVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGE 446 (680)
Q Consensus 369 ~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~ 446 (680)
|.+... .+.|.|+|||++.. .++++||++.++++++... ..+.|++|.+...|+
T Consensus 71 ~~~~~~~~~~~l~v~v~d~~~~-~~~~~iG~~~~~l~~l~~~-----------------------~~~~w~~L~~~~~~~ 126 (131)
T cd04026 71 FDLKPADKDRRLSIEVWDWDRT-TRNDFMGSLSFGVSELIKM-----------------------PVDGWYKLLNQEEGE 126 (131)
T ss_pred EeCCchhcCCEEEEEEEECCCC-CCcceeEEEEEeHHHhCcC-----------------------ccCceEECcCccccc
Confidence 998764 46799999999875 5899999999999998521 235688888877775
Q ss_pred E
Q 005736 447 L 447 (680)
Q Consensus 447 l 447 (680)
.
T Consensus 127 ~ 127 (131)
T cd04026 127 Y 127 (131)
T ss_pred c
Confidence 4
No 170
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.44 E-value=7.8e-13 Score=119.06 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=83.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCE-------EEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecC----C
Q 005736 493 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F 559 (680)
Q Consensus 493 ~I~~a~~L~~~~~~~~~dpyv~v~l~~~-------~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~----~ 559 (680)
-.++|++|+..+..+.+||||++++.+. .++|+++ ++.||.|||+|.|.+.. ..+.|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999998899999999999543 5899999 99999999999998653 46789999999996 5
Q ss_pred -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
++++||++.+++.++..+.....|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 89999999999999998777888999943
No 171
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.44 E-value=3.5e-13 Score=123.98 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=78.5
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCC
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDP 361 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP 361 (680)
.+.+..|.|.|+|++|+||+..+..|. +||||++.+.. .+++|++ +++.||
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~----------------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nP 66 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKA----------------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDP 66 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCC----------------------CCeeEEEEEEeCCCcceeeccceeecCCCCC
Confidence 445566999999999999999887664 39999999852 2468888 789999
Q ss_pred ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736 362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 405 (680)
Q Consensus 362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l 405 (680)
+|||+|.|.+... +..|.|.|||+|.. +++++||++.+++...
T Consensus 67 vfnEtF~f~i~~~~l~~~~L~~~V~~~~~~-~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 67 EFKETFVFQVALFQLSEVTLMFSVYNKRKM-KRKEMIGWFSLGLNSS 112 (138)
T ss_pred cEeeeEEEECCHHHhCccEEEEEEEECCCC-CCCcEEEEEEECCcCC
Confidence 9999999998753 34799999999985 6999999999988754
No 172
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.43 E-value=7.6e-13 Score=121.91 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=77.7
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc--c---eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--E---LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~--~---~~~~T~v-~~t~nP~ 362 (680)
.+.+..|.|.|+|++|++|++.+..|. +||||++.+. + ...+|++ +++.||.
T Consensus 9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~----------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 9 CYNPTANRITVNIIKARNLKAMDINGT----------------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCccccCCC----------------------CCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 344456999999999999999886664 3999999983 2 3567888 7999999
Q ss_pred cceeEEEEEec--C-CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736 363 WDSMFNMVLHE--E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 405 (680)
Q Consensus 363 Wne~f~~~v~~--~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l 405 (680)
|||+|.|.+.. . ...|.|+|||+|.. ++|++||++.+++.+.
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKDRL-SRNDLIGKIYLGWKSG 111 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECCCC-CCCcEeEEEEECCccC
Confidence 99999999764 2 35799999999986 5899999999999875
No 173
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.43 E-value=5.9e-13 Score=122.64 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=76.9
Q ss_pred ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736 290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW 363 (680)
Q Consensus 290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W 363 (680)
+.+..+.|.|+|++|++|+..|..|.+ ||||++.+.. ...+|++ +++.||.|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w 67 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLA----------------------DPYVKVNLYYGKKRISKKKTHVKKCTLNPVF 67 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCC----------------------CeEEEEEEEcCCceeeeEcCccccCCCCCcc
Confidence 334468999999999999998876643 9999999842 2567887 78999999
Q ss_pred ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
||+|.|.+... ...|.|+|||+|.. +++++||++.+++..
T Consensus 68 ~e~F~f~v~~~~~~~~~l~~~v~d~d~~-~~~~~iG~~~~~~~~ 110 (136)
T cd08404 68 NESFVFDIPSEELEDISVEFLVLDSDRV-TKNEVIGRLVLGPKA 110 (136)
T ss_pred CceEEEECCHHHhCCCEEEEEEEECCCC-CCCccEEEEEECCcC
Confidence 99999998752 34689999999986 689999999999987
No 174
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.43 E-value=1.5e-13 Score=153.30 Aligned_cols=331 Identities=13% Similarity=0.087 Sum_probs=200.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEE---
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMV--- 370 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~--- 370 (680)
--+++.|.+|+.|...|..+. +|||+.+.+.++.+.|-+ .+|+||.||.+..|.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~----------------------sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e 263 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDE----------------------SDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE 263 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccC----------------------CCchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence 457788889999998886554 399999999999999998 899999999998775
Q ss_pred Eec------CC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc
Q 005736 371 LHE------ET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN 443 (680)
Q Consensus 371 v~~------~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 443 (680)
+.. .+ ..+.|++||.|+. ++++++|++.....-..+.+.. .|+|+-...
T Consensus 264 i~ge~~~~~~~ppi~v~e~yd~dr~-g~~ef~gr~~~~p~V~~~~p~l-----------------------kw~p~~rg~ 319 (1105)
T KOG1326|consen 264 IYGEAHLVLKNPPIRVFEVYDLDRS-GINEFKGRKKQRPYVMVQCPAL-----------------------KWVPTMRGA 319 (1105)
T ss_pred ecCccchhhcCCCeEEEEeehhhhh-chHHhhcccccceEEEecCCcc-----------------------ceEEeeccc
Confidence 222 12 3578999999997 6999999986654433221111 233332211
Q ss_pred --eeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCC--CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 005736 444 --SGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISR--TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK 519 (680)
Q Consensus 444 --~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~ 519 (680)
.|++.+...+-.-..+-+..+. .........+.-..+ ..+.+.|-...-+|...........|-+.+.+|+
T Consensus 320 ~l~gd~l~a~eliq~~~~i~~p~~-----~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~ 394 (1105)
T KOG1326|consen 320 FLDGDVLIAAELIQIGKPIPQPPP-----QREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG 394 (1105)
T ss_pred ccccchhHHHHHHhhcCCCCCCCc-----ccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence 2332211100000000000000 000001111111111 1123333334446665555556778889999999
Q ss_pred EEEeeecc--CCCCCeeeeEEEEEee-CC-----ceEEEEEEEEecCC-CCceeEEEEEEc-ccccCCC-----------
Q 005736 520 IVQRTRTA--HSPNHVWNQKFELDEI-GG-----GECLMVKCYNEEIF-GDENMGSARVNL-EGLVEGS----------- 578 (680)
Q Consensus 520 ~~~~T~~~--~t~nP~wne~f~f~v~-~~-----~~~L~i~V~d~~~~-~d~~iG~~~i~L-~~l~~~~----------- 578 (680)
+..++..+ .-.||.++..|.+... .+ -..+.+.|.|.+.+ +-...|.|.++- ..+...+
T Consensus 395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~ 474 (1105)
T KOG1326|consen 395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA 474 (1105)
T ss_pred ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence 88888777 7789999877765532 12 34788999999888 778889988761 1111000
Q ss_pred -----------------eeeEEEeCCC-----------------C-----------CCeEEEEEEEEEEecC--------
Q 005736 579 -----------------VRDIWVPLEK-----------------V-----------NTGELRLQIEATRVDD-------- 605 (680)
Q Consensus 579 -----------------~~~~w~~L~~-----------------~-----------~~G~i~l~l~~~~~~~-------- 605 (680)
....|++... . .++...+.++...++.
T Consensus 475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~ 554 (1105)
T KOG1326|consen 475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ 554 (1105)
T ss_pred CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence 0011111110 0 0122334443322110
Q ss_pred ------------C--C--CC------C--------C---------------ccCCCCCceEEEEEEEeecCccccCCCCC
Q 005736 606 ------------N--E--GS------R--------G---------------QNIGSGNGWIELVIVEARDLVAADLRGTS 640 (680)
Q Consensus 606 ------------~--~--~~------~--------~---------------~~~~~~~~~L~V~I~~a~~L~~~d~~g~~ 640 (680)
. + +. . + +...|....++|+|.+|.+|.+.|.+|++
T Consensus 555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a 634 (1105)
T KOG1326|consen 555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA 634 (1105)
T ss_pred hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence 0 0 00 0 0 11235557899999999999999999999
Q ss_pred CCEEEEEECCeE--EeeeeeecCCCCcccceeEEEecC
Q 005736 641 DPYVKVQYGDLK--KRTKLTVACLSGHIQNSKSSMASN 676 (680)
Q Consensus 641 DPyV~v~lg~~~--~kT~~~k~tlnP~wnE~f~f~V~n 676 (680)
||||++.+|++. -++..+.+|+||+|++.|++..+-
T Consensus 635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l 672 (1105)
T KOG1326|consen 635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL 672 (1105)
T ss_pred CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc
Confidence 999999999875 577788899999999999876543
No 175
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=9.6e-13 Score=119.07 Aligned_cols=88 Identities=30% Similarity=0.515 Sum_probs=78.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--Eeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCce
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 563 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~ 563 (680)
.|+|.|++|++|+..+..+.+||||+++++++. .+|+++ ++.||.|||+|.|.+..+ ...|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 379999999999999988999999999997754 578888 999999999999998654 67899999999988 8999
Q ss_pred eEEEEEEcccccC
Q 005736 564 MGSARVNLEGLVE 576 (680)
Q Consensus 564 iG~~~i~L~~l~~ 576 (680)
||++.++|.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998653
No 176
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.42 E-value=1.7e-12 Score=115.92 Aligned_cols=88 Identities=23% Similarity=0.376 Sum_probs=75.9
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecC
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
|+|+|++|++|++.+..+. +||||++.+++ ..++|++ .++.||.|||+|.|.+.+.
T Consensus 1 l~v~vi~a~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~ 58 (115)
T cd04040 1 LTVDVISAENLPSADRNGK----------------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR 58 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC----------------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC
Confidence 5799999999998875443 39999999975 4578888 7899999999999999875
Q ss_pred -CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
.+.+.|+|||++.. .++++||++.+++.++..
T Consensus 59 ~~~~l~~~v~d~~~~-~~~~~iG~~~~~l~~l~~ 91 (115)
T cd04040 59 VRAVLKVEVYDWDRG-GKDDLLGSAYIDLSDLEP 91 (115)
T ss_pred CCCEEEEEEEeCCCC-CCCCceEEEEEEHHHcCC
Confidence 57899999999976 589999999999999864
No 177
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.42 E-value=9e-13 Score=121.27 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=75.1
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc----ceeeeecc-CCCCCCccceeEEEEE
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~----~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
|+|+|++|++|+.+ ..|. +||||++.++ ...++|++ +++.||.|||+|.|.+
T Consensus 1 L~V~Vi~A~~L~~~-~~g~----------------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~ 57 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT----------------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFEL 57 (137)
T ss_pred CEEEEEEccCCCcc-cCCC----------------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEc
Confidence 67999999999887 4454 3999999998 67889998 7899999999999998
Q ss_pred ecC----------------CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 372 HEE----------------TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 372 ~~~----------------~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
... ...|.|+|||++.. .++++||++.+++.++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~-~~~~~IG~~~i~l~~l~~ 108 (137)
T cd08675 58 TIGFSYEKKSFKVEEEDLEKSELRVELWHASMV-SGDDFLGEVRIPLQGLQQ 108 (137)
T ss_pred cccccccccccccccccccccEEEEEEEcCCcC-cCCcEEEEEEEehhhccC
Confidence 764 35799999999986 589999999999999863
No 178
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.42 E-value=1.3e-12 Score=115.85 Aligned_cols=94 Identities=15% Similarity=0.295 Sum_probs=78.6
Q ss_pred CCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeee
Q 005736 338 LTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWA 414 (680)
Q Consensus 338 ~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 414 (680)
+||||.+.++++ .++|++ +++.||.|||+|.|.+.+. .+.|.|.|+|.+.. +|++||++.++|.++....
T Consensus 13 ~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~~~----- 85 (111)
T cd04052 13 LSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR--HDPVLGSVSISLNDLIDAT----- 85 (111)
T ss_pred CCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC--CCCeEEEEEecHHHHHhhh-----
Confidence 499999999874 578888 7899999999999999876 56799999998874 8999999999999985321
Q ss_pred eCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEEe
Q 005736 415 IGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLK 454 (680)
Q Consensus 415 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l~ 454 (680)
...+.|++|.+...|+|++++.+.
T Consensus 86 ----------------~~~~~w~~L~~~~~G~i~~~~~~~ 109 (111)
T cd04052 86 ----------------SVGQQWFPLSGNGQGRIRISALWK 109 (111)
T ss_pred ----------------hccceeEECCCCCCCEEEEEEEEe
Confidence 134679999877789999888664
No 179
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.42 E-value=2.8e-12 Score=112.54 Aligned_cols=101 Identities=22% Similarity=0.388 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEec------
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEE------ 557 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~------ 557 (680)
|.|+|++|+||+ +.+||||+++++ ....+|+++ +|+||.|||+|+|.+. ....|.+.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEcccccccc
Confidence 579999999995 458999999984 257999999 9999999999999987 4779999999983
Q ss_pred -CC-CCceeEEEEEEccc--ccCCCeeeEEEeCCCCCCeEEEEEEE
Q 005736 558 -IF-GDENMGSARVNLEG--LVEGSVRDIWVPLEKVNTGELRLQIE 599 (680)
Q Consensus 558 -~~-~d~~iG~~~i~L~~--l~~~~~~~~w~~L~~~~~G~i~l~l~ 599 (680)
.. .|+++|.+.+.|+- +.....+..-+.|.+ =+|.+++.
T Consensus 75 d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~ 117 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIK 117 (118)
T ss_pred cccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEe
Confidence 33 78999888887754 444555556566653 24444443
No 180
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.42 E-value=1.9e-12 Score=117.33 Aligned_cols=88 Identities=17% Similarity=0.338 Sum_probs=74.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEec
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
.|+|+|.+|+ |...+..+. +||||.+.++++ ..+|++ +++.||.|||+|.|.+.+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~----------------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~ 59 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK----------------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP 59 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC----------------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC
Confidence 5899999998 554443343 399999999977 789998 789999999999999864
Q ss_pred CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.+.|.|+|||++.. ++|++||++.++|+++...
T Consensus 60 -~~~l~~~V~d~~~~-~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 60 -QSTLEFKVWSHHTL-KADVLLGEASLDLSDILKN 92 (125)
T ss_pred -CCEEEEEEEeCCCC-CCCcEEEEEEEEHHHhHhh
Confidence 57899999999986 5899999999999998643
No 181
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.42 E-value=1.4e-12 Score=119.76 Aligned_cols=92 Identities=13% Similarity=0.220 Sum_probs=76.0
Q ss_pred ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736 290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW 363 (680)
Q Consensus 290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W 363 (680)
+.+..|.|+|+|++|++|++.+..|.+ ||||++.+.. ..++|++ +++.||.|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~----------------------dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w 66 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFS----------------------DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY 66 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCC----------------------CceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence 344569999999999999999876643 9999999842 2567887 78999999
Q ss_pred ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
||+|.|.+... ...|.|+|||+|.. ++|++||++.+++..
T Consensus 67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~IG~~~l~~~~ 109 (134)
T cd08403 67 NEALVFDVPPENVDNVSLIIAVVDYDRV-GHNELIGVCRVGPNA 109 (134)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECCCC-CCCceeEEEEECCCC
Confidence 99999998653 23699999999986 589999999998763
No 182
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.41 E-value=3e-12 Score=117.78 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=72.4
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEEEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~~~v 371 (680)
...|.|.|++|++|++++ +|||+|.+++.. .||++ .++.||.|+|.|+|..
T Consensus 10 ~~sL~v~V~EAk~Lp~~~---------------------------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~ 62 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK---------------------------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN 62 (146)
T ss_pred EEEEEEEEEEccCCCCcC---------------------------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC
Confidence 378999999999998765 799999999876 59998 7899999999999975
Q ss_pred ecCCCeEEEEEEEeCCCCC---CCceeEEEEEecccccC
Q 005736 372 HEETGTVRFNLYECIPGHV---KYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 372 ~~~~~~l~l~v~d~d~~~~---~d~~lG~~~i~l~~l~~ 407 (680)
-.....+.|.||+.+.... ++++||++.|++.++..
T Consensus 63 ~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~ 101 (146)
T cd04013 63 LPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS 101 (146)
T ss_pred CCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC
Confidence 5455679999986554321 68999999999999863
No 183
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.41 E-value=1.4e-12 Score=114.47 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=65.0
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeEEEE
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMFNMV 370 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f~~~ 370 (680)
|.|+|++|++|+. . +||||++.++. ...+|++ ++|+||+|||+|+|.
T Consensus 1 L~V~V~~A~~L~~-----~----------------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~ 53 (118)
T cd08686 1 LNVIVHSAQGFKQ-----S----------------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE 53 (118)
T ss_pred CEEEEEeCCCCCC-----C----------------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence 6899999999962 2 29999999863 4589998 899999999999999
Q ss_pred EecCCCeEEEEEEEeC-------CCCCCCceeEEEEEecc
Q 005736 371 LHEETGTVRFNLYECI-------PGHVKYDYLTSCEVKMK 403 (680)
Q Consensus 371 v~~~~~~l~l~v~d~d-------~~~~~d~~lG~~~i~l~ 403 (680)
+.+ .+.|++.|||++ .. .+|+++|++.+.|.
T Consensus 54 l~~-s~~L~~~v~d~~~~~~~~d~~-~~d~~~G~g~i~Ld 91 (118)
T cd08686 54 LEG-SQTLRILCYEKCYSKVKLDGE-GTDAIMGKGQIQLD 91 (118)
T ss_pred eCC-CCEEEEEEEEccccccccccc-CcccEEEEEEEEEC
Confidence 974 779999999983 33 58999988877764
No 184
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.39 E-value=2.9e-12 Score=117.97 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=75.7
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~ 362 (680)
.+.+..+.|.|+|++|+||+..+ .+. +||||++.+.. ..++|++ +++.||+
T Consensus 9 ~y~~~~~~L~V~V~~a~nL~~~~-~~~----------------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~ 65 (137)
T cd08409 9 TYNPTLNRLTVVVLRARGLRQLD-HAH----------------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPS 65 (137)
T ss_pred EECCCCCeEEEEEEEecCCCccc-CCC----------------------CCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence 33344589999999999999888 443 39999999863 3568888 7999999
Q ss_pred cceeEEEEEecC--C-CeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736 363 WDSMFNMVLHEE--T-GTVRFNLYECIPGHVKYDYLTSCEVKMKYV 405 (680)
Q Consensus 363 Wne~f~~~v~~~--~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l 405 (680)
|||+|.|.+... . ..|.|+|+|.+.. .++++||++.+.....
T Consensus 66 fnE~F~f~i~~~~l~~~~L~~~V~~~~~~-~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 66 FNESFSFKVTSRQLDTASLSLSVMQSGGV-RKSKLLGRVVLGPFMY 110 (137)
T ss_pred ccceEEEECCHHHhCccEEEEEEEeCCCC-CCcceEEEEEECCccc
Confidence 999999998642 3 5799999999985 6999999999986544
No 185
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.38 E-value=8.7e-12 Score=113.52 Aligned_cols=109 Identities=27% Similarity=0.442 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCEEEeeecc-CCC-CCeeeeEEEEEeeCC-ceEEEEEEEEec
Q 005736 489 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE 557 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~--~~~~~dpyv~v~l------~~~~~~T~~~-~t~-nP~wne~f~f~v~~~-~~~L~i~V~d~~ 557 (680)
.|+|+|++|+||+..+ ..+.+||||++++ +...++|+++ ++. ||.|||+|.|.+..+ ...|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6999999999998877 4688999999999 3467899998 665 999999999998865 467999999998
Q ss_pred CCCCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEEE
Q 005736 558 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 600 (680)
Q Consensus 558 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 600 (680)
..++++||++.++|.++..+ ..|++|.+. ..|.|.+.++.
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 76889999999999998544 367888652 24777777643
No 186
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.37 E-value=5e-12 Score=113.22 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=75.9
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecC
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEE 374 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~ 374 (680)
|+|+|++|++|+.. |. +||||.+.++++ .++|++ ++ .||.|||+|.|.+...
T Consensus 2 L~v~vi~a~~l~~~---~~----------------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~ 55 (117)
T cd08383 2 LRLRILEAKNLPSK---GT----------------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPP 55 (117)
T ss_pred eEEEEEEecCCCcC---CC----------------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCc
Confidence 78999999999876 43 399999999975 478888 57 9999999999998774
Q ss_pred ---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc-----eee
Q 005736 375 ---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN-----SGE 446 (680)
Q Consensus 375 ---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-----~G~ 446 (680)
...|.+.+||.+.. .++..+|++.+ ..+.. |...+.|++|.+.. .|+
T Consensus 56 ~~~~~~l~i~v~d~~~~-~~~~~~g~v~l--~~~~~----------------------~~~~~~w~~L~~~~~~~~~~G~ 110 (117)
T cd08383 56 DVTFFTLSFYNKDKRSK-DRDIVIGKVAL--SKLDL----------------------GQGKDEWFPLTPVDPDSEVQGS 110 (117)
T ss_pred cccEEEEEEEEEecccC-CCeeEEEEEEe--cCcCC----------------------CCcceeEEECccCCCCCCcCce
Confidence 23577777776643 35666666554 44432 12346788886533 688
Q ss_pred EEEEEE
Q 005736 447 LTVRLV 452 (680)
Q Consensus 447 l~~~l~ 452 (680)
|++++.
T Consensus 111 l~l~~~ 116 (117)
T cd08383 111 VRLRAR 116 (117)
T ss_pred EEEEEE
Confidence 887764
No 187
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.37 E-value=1.5e-12 Score=159.31 Aligned_cols=113 Identities=20% Similarity=0.408 Sum_probs=101.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCCCCc
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDE 562 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~~d~ 562 (680)
.|.|+|+|++|+||. +..+.+||||++.+|++ +.||+++ ++.||.|||.|.|.+.++ ++.|.|+|||+|.++++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence 579999999999998 44689999999999865 8899999 999999999999888875 47899999999988677
Q ss_pred eeEEEEEEcccccCCCeeeEEEeCCC--CCCeE---EEEEEEEE
Q 005736 563 NMGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT 601 (680)
Q Consensus 563 ~iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---i~l~l~~~ 601 (680)
.||.+.|+|.++..+.....||+|.+ .+.|+ |++.++|.
T Consensus 2057 ~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 99999999999999999999999997 46798 99999886
No 188
>PLN03008 Phospholipase D delta
Probab=99.37 E-value=3.9e-12 Score=143.09 Aligned_cols=96 Identities=14% Similarity=0.317 Sum_probs=79.8
Q ss_pred CCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeee
Q 005736 337 DLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWA 414 (680)
Q Consensus 337 ~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 414 (680)
.+||||+|.++++ ..+|++ +++.||+|||+|.|.+.+....|.|+|+|+|.. .+++||++.||++++..
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~--gaD~IG~a~IPL~~L~~------- 146 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF--GAQIIGTAKIPVRDIAS------- 146 (868)
T ss_pred CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCcc--CCceeEEEEEEHHHcCC-------
Confidence 4699999999875 458998 799999999999999998777999999999986 46999999999999864
Q ss_pred eCCCcchhhhhhhccCceeeeeeccCCCc------eeeEEEEEEEeee
Q 005736 415 IGPDSGIIAKHAEFCGDEVEMTVPFEGVN------SGELTVRLVLKEW 456 (680)
Q Consensus 415 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~------~G~l~~~l~l~~~ 456 (680)
|...+.|+++.+.. .|+|++++.+.+.
T Consensus 147 ---------------Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 147 ---------------GERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ---------------CCceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 34566777775432 4789999988764
No 189
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.37 E-value=3.7e-13 Score=137.70 Aligned_cols=94 Identities=15% Similarity=0.323 Sum_probs=82.1
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF 367 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f 367 (680)
...|.|+|.+|+||-++|..|.+ ||||.+.+- ..+++|++ +.++||+|||+|
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlS----------------------DPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtf 236 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLS----------------------DPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETF 236 (683)
T ss_pred CceEEEEehhhccccccCCCCCC----------------------CcceeEEeccCCcchhhhhhhhhhhhcCcccccee
Confidence 46899999999999999988875 999999984 34678887 899999999999
Q ss_pred EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCc
Q 005736 368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST 410 (680)
Q Consensus 368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~ 410 (680)
.|.+... +..|.++|||+|+. +++|++|...+.+++|...+.
T Consensus 237 tf~Lkp~DkdrRlsiEvWDWDrT-sRNDFMGslSFgisEl~K~p~ 280 (683)
T KOG0696|consen 237 TFKLKPSDKDRRLSIEVWDWDRT-SRNDFMGSLSFGISELQKAPV 280 (683)
T ss_pred EEecccccccceeEEEEeccccc-ccccccceecccHHHHhhcch
Confidence 9998764 45799999999997 699999999999999976543
No 190
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.36 E-value=2.1e-12 Score=118.62 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=77.4
Q ss_pred ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736 290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW 363 (680)
Q Consensus 290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W 363 (680)
+.+..|.|.|+|++|++|+..+..+. +||||++.+.. ...+|++ +++.||.|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGL----------------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCC----------------------CCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 33445899999999999998875543 39999999864 2568887 78999999
Q ss_pred ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
||+|.|.+... ...|.|+|||.+.. .++++||++.+++.+
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~~~lG~~~i~l~~ 109 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKDSV-GRNEVIGQVVLGPDS 109 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecCCC-CCCceeEEEEECCCC
Confidence 99999998764 46799999999986 589999999999998
No 191
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.32 E-value=6.7e-12 Score=112.98 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=71.8
Q ss_pred EEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-------eeeecc-CCCCCCccceeEEEEEe
Q 005736 301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-------TRRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 301 v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-------~~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
.++|++|++.+..|.+ ||||++.+... .++|++ +++.||+|||+|.|.+.
T Consensus 6 ~i~a~~L~~~d~~g~~----------------------DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~ 63 (120)
T cd04048 6 SISCRNLLDKDVLSKS----------------------DPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYY 63 (120)
T ss_pred EEEccCCCCCCCCCCC----------------------CcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEE
Confidence 4789999998866643 99999999764 378888 89999999999999865
Q ss_pred c-CCCeEEEEEEEeCCC---CCCCceeEEEEEecccccCC
Q 005736 373 E-ETGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 373 ~-~~~~l~l~v~d~d~~---~~~d~~lG~~~i~l~~l~~~ 408 (680)
. ..+.|.|+|||+|.. .++|++||++.+++++|...
T Consensus 64 ~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 64 FEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred eEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcC
Confidence 4 456899999999961 26999999999999999643
No 192
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.32 E-value=1.3e-11 Score=111.62 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=77.9
Q ss_pred cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736 289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR 362 (680)
Q Consensus 289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~ 362 (680)
.+.+..+.|+|+|++|++|++.+..+. +||||++.+. ....+|++ +++.||.
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~ 66 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGL----------------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPE 66 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCC----------------------CCceEEEEEecCCCCCCceeeeeecCCCCCC
Confidence 333445899999999999998876554 3999999983 24678888 7899999
Q ss_pred cceeEEEE-Eec--C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 363 WDSMFNMV-LHE--E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 363 Wne~f~~~-v~~--~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
|||+|.|. +.. . ...+.|+|||++.. .+++||++.+++++|..+
T Consensus 67 Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~--~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 67 FNETLTYYGITEEDIQRKTLRLLVLDEDRF--GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ccceEEEcCCCHHHhCCCEEEEEEEEcCCc--CCeeEEEEEEEcccCCCC
Confidence 99999996 332 1 46899999999874 789999999999999754
No 193
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.3e-12 Score=130.18 Aligned_cols=208 Identities=19% Similarity=0.284 Sum_probs=151.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeE-
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMF- 367 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f- 367 (680)
-.+..++..|++|++++..+.. |||+.+.+.. ...+|++ .+++||.|+|+-
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~----------------------d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev 150 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLA----------------------DPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV 150 (362)
T ss_pred hhcceeechhcccchhhhhhhc----------------------chHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence 6889999999999999988764 9999998863 3467777 799999999864
Q ss_pred -EEEEecCC--CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccC----
Q 005736 368 -NMVLHEET--GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE---- 440 (680)
Q Consensus 368 -~~~v~~~~--~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~---- 440 (680)
.+...+.. ..+++.|.|.+.. ...+++|+..+++..|..... +.++.|= ...+|.+
T Consensus 151 ~~~i~~~~~~~K~~Rk~vcdn~~~-~~~~sqGq~r~~lkKl~p~q~-------------k~f~~cl---~~~lp~~rad~ 213 (362)
T KOG1013|consen 151 YEGITDDDTHLKVLRKVVCDNDKK-THNESQGQSRVSLKKLKPLQR-------------KSFNICL---EKSLPSERADR 213 (362)
T ss_pred ecccccchhhhhhhheeeccCccc-ccccCcccchhhhhccChhhc-------------chhhhhh---hccCCcccccc
Confidence 45555543 3588889998875 578999999999888864311 1111000 0001111
Q ss_pred --CCceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC
Q 005736 441 --GVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG 518 (680)
Q Consensus 441 --~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~ 518 (680)
..++|++.+++.+ .+ +..-+.|+++.|..|...|.++.+||||..++.
T Consensus 214 ~~~E~rg~i~isl~~-----------------------------~s-~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~ 263 (362)
T KOG1013|consen 214 DEDEERGAILISLAY-----------------------------SS-TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLS 263 (362)
T ss_pred cchhhccceeeeecc-----------------------------Cc-CCCceEEEEEEeeeeeccccCCCCCccceeecC
Confidence 1123444433311 11 123699999999999999999999999999982
Q ss_pred -----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-CCceeEEEEEEc
Q 005736 519 -----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNL 571 (680)
Q Consensus 519 -----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-~d~~iG~~~i~L 571 (680)
.-+.+|.+. +|.+|.||+.|.|.+... ...+.|.|||++.. ..+++|-+...+
T Consensus 264 pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 264 PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 257789999 999999999999998763 67899999999987 778888766543
No 194
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.28 E-value=1.2e-11 Score=151.73 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=91.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
.|.|.|+|++|+||. .+ .|. .||||++.+|++ +++|++ +++.||+|||.|+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~-~~-~~~----------------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~ 2034 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK-QS-MGN----------------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAF 2034 (2102)
T ss_pred CcceEEEEeeccccc-cc-cCC----------------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeee
Confidence 399999999999998 33 343 399999999966 788998 8999999999999999
Q ss_pred ecCC--CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC--Cceee-
Q 005736 372 HEET--GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG--VNSGE- 446 (680)
Q Consensus 372 ~~~~--~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~--~~~G~- 446 (680)
.++. ++|+++|||+|.+ .++.||+++|++.++..+ +....||++.+ .+.|.
T Consensus 2035 ~~p~~~~~l~iev~d~d~f--~kd~~G~~~i~l~~vv~~----------------------~~~~~~~~L~~~~~k~G~~ 2090 (2102)
T PLN03200 2035 DSPPKGQKLHISCKSKNTF--GKSSLGKVTIQIDRVVME----------------------GTYSGEYSLNPESNKDGSS 2090 (2102)
T ss_pred cCCCCCCceEEEEEecCcc--CCCCCceEEEEHHHHhcC----------------------ceeeeeeecCcccccCCCc
Confidence 9864 7899999999986 455999999999998643 35567888876 45788
Q ss_pred --EEEEEE
Q 005736 447 --LTVRLV 452 (680)
Q Consensus 447 --l~~~l~ 452 (680)
+.+++.
T Consensus 2091 ~~~~~e~~ 2098 (2102)
T PLN03200 2091 RTLEIEFQ 2098 (2102)
T ss_pred ceEEEEEE
Confidence 777763
No 195
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.25 E-value=8.8e-11 Score=106.86 Aligned_cols=87 Identities=18% Similarity=0.415 Sum_probs=72.0
Q ss_pred EEEEEEEecCCCCCCC--CCCCCcccccccCCCCccccccCCCCCCeEEEEEEc------ceeeeecc-CCC-CCCccce
Q 005736 296 IVYVRVISASKLSRSS--LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDA-RPG-SDPRWDS 365 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d--~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~------~~~~~T~v-~~t-~nP~Wne 365 (680)
.|+|+|++|++|+..+ ..+. .||||++++. ....+|++ .++ .||.|||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e 60 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI----------------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc----------------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCC
Confidence 5899999999999876 2332 4999999994 45578887 555 5999999
Q ss_pred eEEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 366 MFNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 366 ~f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
+|.|.+.... ..|.|+|||.+.. +|++||++.+++.++.
T Consensus 61 ~f~f~~~~~~~~~l~~~V~d~~~~--~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 61 TFEFDVTVPELAFLRFVVYDEDSG--DDDFLGQACLPLDSLR 100 (128)
T ss_pred cEEEEEeCCCeEEEEEEEEeCCCC--CCcEeEEEEEEhHHhc
Confidence 9999988654 5699999998874 8999999999999985
No 196
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.24 E-value=3.5e-11 Score=106.46 Aligned_cols=83 Identities=20% Similarity=0.387 Sum_probs=68.9
Q ss_pred EEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce------eeeecc-CCCCCCccceeEEEEEec
Q 005736 301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL------TRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 301 v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~------~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
.++|++|++.|..|.+ ||||++.+... .++|++ ++++||+|| +|.|.+.+
T Consensus 6 ~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~ 62 (110)
T cd04047 6 QFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQK 62 (110)
T ss_pred EEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHH
Confidence 4589999999876653 99999988542 578888 899999999 68887543
Q ss_pred C-----CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 374 E-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 374 ~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
. ...|.|+|||+|.. ++|++||++.++++++..
T Consensus 63 l~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 63 LCNGDYDRPIKIEVYDYDSS-GKHDLIGEFETTLDELLK 100 (110)
T ss_pred hcCCCcCCEEEEEEEEeCCC-CCCcEEEEEEEEHHHHhc
Confidence 2 56899999999986 699999999999999964
No 197
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=3.8e-11 Score=100.36 Aligned_cols=79 Identities=29% Similarity=0.562 Sum_probs=70.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCce
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDEN 563 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~~ 563 (680)
|+|+|++|+||+..+..+.+||||++.+++ ..++|+++ ++.+|.|+|+|.|.+.. ..+.|.|+|||++.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999888888999999999965 77999999 99999999999999765 455699999999988 6999
Q ss_pred eEEEE
Q 005736 564 MGSAR 568 (680)
Q Consensus 564 iG~~~ 568 (680)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 198
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.3e-11 Score=131.40 Aligned_cols=111 Identities=37% Similarity=0.629 Sum_probs=97.6
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC------
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------ 559 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~------ 559 (680)
...+.++|++|.+|..+|..|++||||.+.+++.+.||+++ +.+||+|||.|.|.+.+..+.|.+.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 44799999999999999999999999999999999999999 99999999999999999999999999998752
Q ss_pred ------CCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEE
Q 005736 560 ------GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIE 599 (680)
Q Consensus 560 ------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~ 599 (680)
.|+|+|+..|.+..+. ...+.||+|+.. .+|.|++.+.
T Consensus 374 qkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred HHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence 5899999999988763 456799999864 2577766553
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.23 E-value=5.1e-11 Score=105.43 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=72.5
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECC------EEEeeecc-CCCCCeeeeEEEEEeeC-----CceEEEEEEEEecCC
Q 005736 492 VTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIG-----GGECLMVKCYNEEIF 559 (680)
Q Consensus 492 V~I~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~-~t~nP~wne~f~f~v~~-----~~~~L~i~V~d~~~~ 559 (680)
+-.++|++|+..+..+.+||||++++.+ ..++|+++ ++.||.|| +|.|.+.. ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4456999999999889999999999843 36899999 99999999 68877532 267999999999988
Q ss_pred -CCceeEEEEEEcccccCC
Q 005736 560 -GDENMGSARVNLEGLVEG 577 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l~~~ 577 (680)
+|++||++.++++++..+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 899999999999998743
No 200
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.22 E-value=5e-11 Score=99.63 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=68.5
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCccceeEEEEEe
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne~f~~~v~ 372 (680)
|+|+|++|++|+..+..+. .||||++.++. ...+|++ +++.+|.|||+|.|.+.
T Consensus 1 L~v~I~~a~~L~~~~~~~~----------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~ 58 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK----------------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLD 58 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS----------------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEES
T ss_pred CEEEEEEEECCCCcccCCc----------------------ccccceeecceeeeeeeeeeeeeccccceeeeeeeeeee
Confidence 7899999999998774443 39999999986 5689998 78999999999999977
Q ss_pred cC-CCeEEEEEEEeCCCCCCCceeEEEE
Q 005736 373 EE-TGTVRFNLYECIPGHVKYDYLTSCE 399 (680)
Q Consensus 373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~ 399 (680)
.. .+.|.|+|||++.. .+|++||++.
T Consensus 59 ~~~~~~l~~~V~~~~~~-~~~~~iG~~~ 85 (85)
T PF00168_consen 59 DPDLDSLSFEVWDKDSF-GKDELIGEVK 85 (85)
T ss_dssp HGCGTEEEEEEEEETSS-SSEEEEEEEE
T ss_pred cccccceEEEEEECCCC-CCCCEEEEEC
Confidence 65 45699999999986 5799999974
No 201
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.2e-11 Score=126.85 Aligned_cols=111 Identities=17% Similarity=0.360 Sum_probs=94.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
..+.++|+.|.+|.++|..|++ ||||...+|..+++|++ ...+||+|||.|.|..++
T Consensus 295 akitltvlcaqgl~akdktg~s----------------------dpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn 352 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKS----------------------DPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN 352 (1283)
T ss_pred eeeEEeeeecccceecccCCCC----------------------CCcEEEeecccchhhHhhhhccchhhhhheeeeecC
Confidence 5788999999999999998875 99999999999999998 899999999999999999
Q ss_pred CCCeEEEEEEEeCCCC----------CCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc
Q 005736 374 ETGTVRFNLYECIPGH----------VKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN 443 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 443 (680)
.++.+.+.|||.|.+. -+|||+|+..|.+..|. ++.+.||.|+...
T Consensus 353 stdrikvrvwded~dlksklrqkl~resddflgqtvievrtls------------------------gemdvwynlekrt 408 (1283)
T KOG1011|consen 353 STDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS------------------------GEMDVWYNLEKRT 408 (1283)
T ss_pred CCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc------------------------cchhhhcchhhcc
Confidence 9999999999988652 26999999999988874 2567788886543
Q ss_pred -----eeeEEEEE
Q 005736 444 -----SGELTVRL 451 (680)
Q Consensus 444 -----~G~l~~~l 451 (680)
+|.|.+.+
T Consensus 409 dksavsgairlhi 421 (1283)
T KOG1011|consen 409 DKSAVSGAIRLHI 421 (1283)
T ss_pred chhhccceEEEEE
Confidence 46655443
No 202
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2.7e-10 Score=97.61 Aligned_cols=97 Identities=34% Similarity=0.703 Sum_probs=86.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCceeE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 565 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~~iG 565 (680)
|.|.|++|++|........++|||.+.+.. ..++|++. ++.||.||+.|.|.+.. ....+.|+||+.+.. .+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998766677899999999987 89999999 99999999999999987 678899999999887 689999
Q ss_pred EEEEEccccc-CCCeeeEEEeC
Q 005736 566 SARVNLEGLV-EGSVRDIWVPL 586 (680)
Q Consensus 566 ~~~i~L~~l~-~~~~~~~w~~L 586 (680)
.+.+++.++. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999988 66677788875
No 203
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.09 E-value=6.8e-10 Score=95.44 Aligned_cols=91 Identities=30% Similarity=0.559 Sum_probs=79.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCce
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 563 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~ 563 (680)
+.++|+++++|......+..+|||++.+.. ...+|+.+ ++.||.|||+|.|.+... ...|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 789999999998777657899999999965 48999999 888999999999999876 88999999999877 6899
Q ss_pred eEEEEEEcccccCCCee
Q 005736 564 MGSARVNLEGLVEGSVR 580 (680)
Q Consensus 564 iG~~~i~L~~l~~~~~~ 580 (680)
+|.+.+++.++..+...
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999988765443
No 204
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.05 E-value=1.1e-09 Score=92.82 Aligned_cols=87 Identities=17% Similarity=0.296 Sum_probs=73.4
Q ss_pred HHHHHhhcc-cCchHHHHHHHHHHHHHHHhh-cCCCccceEEEeEEeeCCCCCeeeeEEEEECCCCCeEEEEEEEEEecC
Q 005736 106 NKLLMEVWP-GYINPKLSIRFSQIVEKRLKH-RKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDAN 183 (680)
Q Consensus 106 N~~l~~~W~-~~~~~~~~~~i~~~v~~~l~~-~~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~~~~~~~ld~~~~~~~~ 183 (680)
|.++++++- .+-++.+.+.+++.++..|+. .+|+|+++|.+++++||+.||.|+++++.....++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G- 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG- 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC-
Confidence 677777543 344678899999999999998 68999999999999999999999999997656777899999999999
Q ss_pred CeEEEEEEEe
Q 005736 184 DISILLLAKL 193 (680)
Q Consensus 184 ~~~i~l~~~~ 193 (680)
++++.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 5666666553
No 205
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.99 E-value=2.8e-09 Score=96.30 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEEC---CEEEeeecc-CCCC--CeeeeEEEEEeeC---------------
Q 005736 490 INVTVVEGKDLMPKD--KSG--KCDPYVKLQYG---KIVQRTRTA-HSPN--HVWNQKFELDEIG--------------- 544 (680)
Q Consensus 490 L~V~I~~a~~L~~~~--~~~--~~dpyv~v~l~---~~~~~T~~~-~t~n--P~wne~f~f~v~~--------------- 544 (680)
|+|.|.+|+|++..+ ..| .+||||++.+. ...++|.+. +++| |.||+.|.|.+.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999965433 245 59999999994 478999999 9999 9999999988653
Q ss_pred ---------CceEEEEEEEEecCC-CCceeEEEEEEcccccCCC
Q 005736 545 ---------GGECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS 578 (680)
Q Consensus 545 ---------~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~ 578 (680)
....|.++|||+|.+ +|++||++.++|+.+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 135899999999998 8999999999999887544
No 206
>PLN02270 phospholipase D alpha
Probab=98.98 E-value=7.4e-09 Score=117.10 Aligned_cols=119 Identities=18% Similarity=0.357 Sum_probs=102.0
Q ss_pred cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-EEEeeecc-C-CCCCeeeeEEEEEeeCCc
Q 005736 488 RKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYGK-IVQRTRTA-H-SPNHVWNQKFELDEIGGG 546 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~------------------~~~~~dpyv~v~l~~-~~~~T~~~-~-t~nP~wne~f~f~v~~~~ 546 (680)
|.|.++|.+|++|+..+ ..+.+||||.|.+++ ...||+++ + ..||.|+|.|.+.+....
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 58999999999997531 125679999999965 78899999 6 469999999999999888
Q ss_pred eEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeCCCCC------CeEEEEEEEEEEecCC
Q 005736 547 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDDN 606 (680)
Q Consensus 547 ~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~l~~~~~~~~ 606 (680)
..+.|.|.|.+.+...+||.+.+|..++..+...+.|+++.+.. ..+|+++++|.++...
T Consensus 88 ~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 88 SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 89999999999887889999999999999988899999997642 2489999999986543
No 207
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.96 E-value=4.5e-09 Score=90.26 Aligned_cols=90 Identities=16% Similarity=0.350 Sum_probs=75.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce---eeeecc-CCCCCCccceeEEEEE
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~---~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
.|.|+|.+|++|......+. .+|||.+++... ..+|++ .++.||.|||+|.|.+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~----------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~ 58 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK----------------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV 58 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC----------------------CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEe
Confidence 37899999999987653222 499999999864 788887 6778999999999999
Q ss_pred ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
... .+.|.|+|||.+.. ..+.++|.+.+++.++...
T Consensus 59 ~~~~~~~l~i~v~~~~~~-~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 59 PPPELAELEIEVYDKDRF-GRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred cCcccCEEEEEEEecCCc-cCCceeEEEEEEHHHcccC
Confidence 887 78899999998875 4799999999999988643
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.89 E-value=1.1e-08 Score=87.60 Aligned_cols=87 Identities=22% Similarity=0.391 Sum_probs=74.2
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEec-
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHE- 373 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~- 373 (680)
|.|+|++|++|........ .||||.+.+.. ...+|.+ .++.||.|||.|.|.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~----------------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~ 58 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK----------------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC----------------------CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC
Confidence 5789999999987543222 49999999997 8888988 688999999999999998
Q ss_pred CCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
....+.|+|||.+.. .+++++|++.+++.++.
T Consensus 59 ~~~~l~i~v~~~~~~-~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 59 ESDTLTVEVWDKDRF-SKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCEEEEEEEecCCC-CCCceeEEEEEeHHHhh
Confidence 567899999998875 46899999999999986
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.87 E-value=1.4e-08 Score=91.76 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=72.8
Q ss_pred EEEEEEecCCCCCCC--CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCC--CccceeEE
Q 005736 297 VYVRVISASKLSRSS--LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSD--PRWDSMFN 368 (680)
Q Consensus 297 L~V~v~~a~~L~~~d--~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~n--P~Wne~f~ 368 (680)
|||.|.+|++++..+ ..|. ...||||++.+.. ..++|.+ ++++| |.||+.|.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~--------------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfv 61 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE--------------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFV 61 (133)
T ss_pred EEEEEEECcCCcccccccCCc--------------------cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEE
Confidence 899999999966543 3332 1249999999874 5688888 68999 99999999
Q ss_pred EEEec---------------------C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 369 MVLHE---------------------E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 369 ~~v~~---------------------~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
|.+.- . ...|.++|||.|.. ++|++||++.++|..+.+.
T Consensus 62 F~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~-s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 62 FPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKF-SPDDFLGSLELDLSILPRP 124 (133)
T ss_pred EeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECccc-CCCCcceEEEEEhhhcccc
Confidence 88654 1 34699999999997 6999999999999998643
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=98.86 E-value=3e-08 Score=108.00 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=80.6
Q ss_pred cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEE
Q 005736 488 RKINVTVVEGKDLMPK-----DKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYN 555 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~-----~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d 555 (680)
..|.|+|+.+.+++.. +....+||||+|.+. ...++|.+. ++.||.|||+|.|.+..+ -..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987411 223568999999993 346678777 999999999999999876 5689999999
Q ss_pred ecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 556 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
+|.. +++++|+..+|+..+..+- ++++|.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~ 520 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI---RAVPLYDE 520 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc---eeEeccCC
Confidence 9987 8999999999999998765 55677653
No 211
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.77 E-value=3.1e-08 Score=84.06 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=71.9
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeE
Q 005736 490 INVTVVEGKDLMPKD---KSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMG 565 (680)
Q Consensus 490 L~V~I~~a~~L~~~~---~~~~~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG 565 (680)
|.|+|..++|+...+ ..+.++|||.+.+++ ++.||++ +.||.|||+|.|.+ +....+.+.|||......-.||
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~ 77 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVG 77 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeeccee
Confidence 579999999998777 578899999999976 4888887 58999999999999 4688899999999765566899
Q ss_pred EEEEEcccccC
Q 005736 566 SARVNLEGLVE 576 (680)
Q Consensus 566 ~~~i~L~~l~~ 576 (680)
..-+.++++.+
T Consensus 78 llW~~~sdi~E 88 (109)
T cd08689 78 LLWLRLSDIAE 88 (109)
T ss_pred eehhhHHHHHH
Confidence 99999998763
No 212
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.72 E-value=4.8e-08 Score=82.87 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=68.6
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeeccCCCCCCccceeEEEEEecCC
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVLHEET 375 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v~~t~nP~Wne~f~~~v~~~~ 375 (680)
|.|+|..|+++...+....+ +.+||||.+++++. +.+|+. +.||.|||+|.|.|+ ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~-------------------~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~Vd-k~ 58 (109)
T cd08689 1 LTITITSARDVDHIASPRFS-------------------KRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPVE-KN 58 (109)
T ss_pred CEEEEEEEecCccccchhhc-------------------cCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEec-CC
Confidence 67999999999887632111 12499999999976 667766 589999999999994 56
Q ss_pred CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 376 GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 376 ~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
..+.+.|||+.. ...-.+|...+.++++..
T Consensus 59 nEiel~VyDk~~--~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 59 NEEEVIVYDKGG--DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred cEEEEEEEeCCC--CeecceeeehhhHHHHHH
Confidence 789999999765 366788999999998853
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=98.70 E-value=7.6e-08 Score=104.90 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=73.5
Q ss_pred CeEEEEEEEecCCCCCC--CCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccce
Q 005736 294 GGIVYVRVISASKLSRS--SLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDS 365 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~--d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne 365 (680)
...|.|+|+.|+++... ...+.. ..+||||+|.+.+ ..++|.+ .|+.||+|||
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~-------------------s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne 468 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRL-------------------SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGE 468 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCC-------------------CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecc
Confidence 36799999999988521 111110 1259999999863 3556777 6899999999
Q ss_pred eEEEEEecCCC-eEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 366 MFNMVLHEETG-TVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 366 ~f~~~v~~~~~-~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+|.|.+..++- .|+|+|+|+|.. .+|+++|++.+|+..|..
T Consensus 469 ~F~F~i~~PELAlLrf~V~D~D~~-~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 469 EFTFPLTYPDLALISFEVYDYEVS-TADAFCGQTCLPVSELIE 510 (537)
T ss_pred eeEEEEEccCceEEEEEEEecCCC-CCCcEEEEEecchHHhcC
Confidence 99999988764 599999999975 589999999999999964
No 214
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.70 E-value=5.9e-08 Score=109.46 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=74.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc---CCCCCCccceeEEEEEe
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA---RPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v---~~t~nP~Wne~f~~~v~ 372 (680)
.++|.|++|-+|.+.|..|.+ |||+.+.+|+.....+. .+|+||++.+.|++...
T Consensus 614 LvrVyvv~A~~L~p~D~ng~a----------------------dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~ 671 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDA----------------------DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECL 671 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCc----------------------CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcc
Confidence 667999999999999987764 99999999987644442 68999999999999988
Q ss_pred cCC-CeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 373 EET-GTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 373 ~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
-.. ..+.+.|||+|.. ..|+.+|+..++|..
T Consensus 672 lp~ek~l~v~vyd~D~~-~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 672 LPFEKDLIVEVYDHDLE-AQDEKIGETTIDLEN 703 (1105)
T ss_pred cchhhcceeEEEEeecc-cccchhhceehhhhh
Confidence 774 4599999999997 689999999999875
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=98.67 E-value=2.8e-07 Score=102.71 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=81.8
Q ss_pred CcEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEE
Q 005736 487 GRKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKC 553 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~------~~~~~~dpyv~v~l-~----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V 553 (680)
...|.|+|+.|.+++.. +....+||||+|.+ | ....+|+++ ++.||.|||+|.|.+..+ -..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35899999999987421 11234699999999 2 467799999 889999999999998875 46799999
Q ss_pred EEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 554 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 554 ~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
||+|.. .++++|+..+|+..+..+. +|++|.+.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 999887 8999999999999998765 58898753
No 216
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.63 E-value=3.1e-07 Score=102.12 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=80.2
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEE
Q 005736 488 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 554 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~------~~~~~~dpyv~v~l-~----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~ 554 (680)
..|.|+|+.+.+++.. +....+||||+|.+ | ....+|++. ++.||.|||+|.|.+..+ -..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987421 22245799999999 2 356789988 999999999999998876 578999999
Q ss_pred EecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 555 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 555 d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
|+|.. +|+++|+..+|+..|..+-. .++|.+.
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~ 581 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNR 581 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCccc---eEeccCC
Confidence 99987 89999999999999987653 4567553
No 217
>PLN02270 phospholipase D alpha
Probab=98.61 E-value=3.4e-07 Score=103.85 Aligned_cols=133 Identities=17% Similarity=0.238 Sum_probs=92.7
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCcc-ccccCCCCCCeEEEEEEcc-eeeeecc-CC-CCCCccceeEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSL-EEHYEDKDLTTFVEIELEE-LTRRTDA-RP-GSDPRWDSMFNM 369 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~-~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~-t~nP~Wne~f~~ 369 (680)
-|.|.|+|.+|++|++.+..+.. +|-. .... ....+..++|||++|.+++ ...||++ .+ ..||.|||+|.+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i 81 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFL-GKLV----ANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHI 81 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHH-HHHH----hccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEE
Confidence 39999999999999874321100 0000 0000 0011223459999999985 5679998 55 469999999999
Q ss_pred EEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----e-
Q 005736 370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----S- 444 (680)
Q Consensus 370 ~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~- 444 (680)
.+......+.|.|.|.|.. ...+||++.+|..++.. |+..+.|+++.+.+ +
T Consensus 82 ~~ah~~~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~~----------------------g~~i~~~~~~~~~~~~p~~~ 137 (808)
T PLN02270 82 YCAHMASNIIFTVKDDNPI--GATLIGRAYIPVEEILD----------------------GEEVDRWVEILDNDKNPIHG 137 (808)
T ss_pred eeccCcceEEEEEecCCcc--CceEEEEEEEEHHHhcC----------------------CCccccEEeccCCCCCcCCC
Confidence 9999889999999998775 66799999999999864 34566777775433 2
Q ss_pred -eeEEEEEEEee
Q 005736 445 -GELTVRLVLKE 455 (680)
Q Consensus 445 -G~l~~~l~l~~ 455 (680)
..|++++.+.+
T Consensus 138 ~~~~~~~~~f~~ 149 (808)
T PLN02270 138 GSKIHVKLQYFE 149 (808)
T ss_pred CCEEEEEEEEEE
Confidence 25777776654
No 218
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.59 E-value=7e-07 Score=99.23 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=80.0
Q ss_pred CcEEEEEEEEeecCC--C----CCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEE
Q 005736 487 GRKINVTVVEGKDLM--P----KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKC 553 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~--~----~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V 553 (680)
...|+|+|+.+.++. . .+....+||||+|.+- ....+|+++ ++.||.|||+|+|.+..+ -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 347999999998752 1 1123467999999992 357799999 889999999999998865 57899999
Q ss_pred EEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 554 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 554 ~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
+|+|.. .++++|+..+|+..|..+- +.++|.+.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 999876 8999999999999998765 34567553
No 219
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.57 E-value=2e-07 Score=98.92 Aligned_cols=123 Identities=19% Similarity=0.293 Sum_probs=96.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccc-eeEEEEEe
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWD-SMFNMVLH 372 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wn-e~f~~~v~ 372 (680)
|.|.|+|..||+|+-+|.... .-|.||++++++..++|.+ .+++||.|| +.|.|.|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd---------------------~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevd 61 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASD---------------------LTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVD 61 (1169)
T ss_pred CcceeEEEeccCCcccccccc---------------------cchheeEEEecccceehhhhhhhcCCcccccceEEecC
Confidence 889999999999999986432 2489999999999999999 799999999 67999999
Q ss_pred cC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc---eee
Q 005736 373 EE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN---SGE 446 (680)
Q Consensus 373 ~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~---~G~ 446 (680)
+. ++.|.+.+.|+|.. +.+|-||.+.|++.-|..... ..+-|-+ |.....|+|+-+.- +|+
T Consensus 62 dadlqdeplqi~lld~dty-sandaigkv~i~idpl~~e~a----------aqavhgk--gtvisgw~pifdtihgirge 128 (1169)
T KOG1031|consen 62 DADLQDEPLQIRLLDHDTY-SANDAIGKVNIDIDPLCLEEA----------AQAVHGK--GTVISGWFPIFDTIHGIRGE 128 (1169)
T ss_pred hhhhccCCeeEEEeccccc-ccccccceeeeccChHHHHhH----------HhhhcCC--ceEEeeeeecceecccccce
Confidence 85 45799999999997 699999999999988753221 0011111 55677899876543 578
Q ss_pred EEEEE
Q 005736 447 LTVRL 451 (680)
Q Consensus 447 l~~~l 451 (680)
+.+-+
T Consensus 129 inviv 133 (1169)
T KOG1031|consen 129 INVIV 133 (1169)
T ss_pred eEEEE
Confidence 77544
No 220
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.54 E-value=3.7e-07 Score=101.42 Aligned_cols=97 Identities=19% Similarity=0.348 Sum_probs=80.5
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEEC-----CEEEeeecc--CCCCCeeeeEEEEEeeCC-ceEEEEEEEEe
Q 005736 489 KINVTVVEGKDLMPKDK----SGKCDPYVKLQYG-----KIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNE 556 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~----~~~~dpyv~v~l~-----~~~~~T~~~--~t~nP~wne~f~f~v~~~-~~~L~i~V~d~ 556 (680)
+|.|.|+.+.++.+... ....||||.|.+- ....+|+++ ++-||.|+|+|+|.+..+ -+-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997754322 2468999999993 357899955 999999999999999986 57899999999
Q ss_pred cCC-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
|.. +|+|+|+.++|+..|..+-.+ ++|.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~ 726 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLS 726 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecC
Confidence 988 899999999999999876544 56655
No 221
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.51 E-value=3.6e-07 Score=96.99 Aligned_cols=112 Identities=21% Similarity=0.453 Sum_probs=94.5
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEeeecc-CCCCCeee-eEEEEEeeC---CceEEEEEEEEecCC-C
Q 005736 488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWN-QKFELDEIG---GGECLMVKCYNEEIF-G 560 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wn-e~f~f~v~~---~~~~L~i~V~d~~~~-~ 560 (680)
|.|.|.|..+|+|+.+|. +...|.||++.+++..++|.+. +++||.|| +.|.|.+.+ ..+.|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 479999999999998885 4568999999999999999999 99999999 579999987 367899999999998 8
Q ss_pred CceeEEEEEEcccccC----------CCeeeEEEeCCCC---CCeEEEEEEE
Q 005736 561 DENMGSARVNLEGLVE----------GSVRDIWVPLEKV---NTGELRLQIE 599 (680)
Q Consensus 561 d~~iG~~~i~L~~l~~----------~~~~~~w~~L~~~---~~G~i~l~l~ 599 (680)
++.||.+.|+++.+.. +.....|+++-+. -+|+|.+-+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 9999999999987652 2345789998764 2578776654
No 222
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.49 E-value=3.8e-07 Score=101.40 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=74.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeec-c-CCCCCCccceeEE
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTD-A-RPGSDPRWDSMFN 368 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~-v-~~t~nP~Wne~f~ 368 (680)
.|.|+|..+.++...-..+. .+...||||.|++-+ ...+|+ + .|+-||.|+|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~------------------~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~ 678 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK------------------FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFE 678 (746)
T ss_pred eeEEEEEecCcccCCCCCCc------------------ccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEE
Confidence 79999999997665421111 023459999998753 467888 4 5899999999999
Q ss_pred EEEecCCC-eEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 369 MVLHEETG-TVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 369 ~~v~~~~~-~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
|.+..+.- .|+|.|+|+|.. .+|||+|+..+|+..|.++
T Consensus 679 F~l~vPELAliRF~V~d~d~~-~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 679 FQLSVPELALIRFEVHDYDYI-GKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred EEEeccceeEEEEEEEecCCC-CcccccceeeccHHHhhCc
Confidence 99999865 589999999986 6899999999999999643
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=98.48 E-value=2e-06 Score=95.42 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=85.8
Q ss_pred CcEEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-----CCEEEeeecc-CCCCCee-eeEEEEEeeCC-ceEEEEE
Q 005736 487 GRKINVTVVEGKDLMP---KD---KSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVK 552 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~---~~---~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~w-ne~f~f~v~~~-~~~L~i~ 552 (680)
...|.|+|+.|.+|+. .+ ....+||||+|.+ +...++|+++ ++.||.| ||+|.|.+..+ -..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 11 2245899999999 2356799999 8899999 99999998875 5789999
Q ss_pred EEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEE
Q 005736 553 CYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT 601 (680)
Q Consensus 553 V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~ 601 (680)
|+|+|.. .++++|+..+|+..|..+- +.++|.+.. ...|.+++.+.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 9999876 8999999999999997665 345675532 24566665544
No 224
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.48 E-value=6.4e-07 Score=99.66 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=72.9
Q ss_pred eEEEEEEEecCCCCCCCC--CCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCcccee
Q 005736 295 GIVYVRVISASKLSRSSL--RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSM 366 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~--~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~ 366 (680)
..|.|+|+.+.++..... .... -..+||||+|.+- ...++|++ .++.||.|||+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~------------------~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wnee 530 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDS------------------YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKE 530 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCC------------------CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCe
Confidence 579999999998753211 0000 0125999999984 24568888 68999999999
Q ss_pred EEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 367 FNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 367 f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
|.|.+.-+. ..|+|+|+|+|.. .+|+++|++.+|+..|..
T Consensus 531 f~F~l~vPELAllRf~V~d~d~~-~~ddfiGQ~~lPv~~Lr~ 571 (598)
T PLN02230 531 FIFPLAVPELALLRVEVHEHDIN-EKDDFGGQTCLPVSEIRQ 571 (598)
T ss_pred eEEEEEcCceeEEEEEEEECCCC-CCCCEEEEEEcchHHhhC
Confidence 999988765 4699999999875 589999999999999964
No 225
>PLN02952 phosphoinositide phospholipase C
Probab=98.45 E-value=9.6e-07 Score=98.48 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=73.4
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF 367 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f 367 (680)
...|.|+|+.|.+++........ +. -..+||||+|.+- ..+++|++ .++.||+|||+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~---------~~-------~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F 532 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHF---------DS-------YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEF 532 (599)
T ss_pred cceEEEEEEECcccCCCCccccC---------Cc-------cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCee
Confidence 36899999999988532100000 00 0125999999884 35678887 777999999999
Q ss_pred EEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 368 NMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 368 ~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
.|.+..+. ..|+|+|+|+|.. ..|+++|++.+|+..|..
T Consensus 533 ~F~i~~PELAllrf~V~D~D~~-~~ddfiGq~~lPv~~Lr~ 572 (599)
T PLN02952 533 SFPLTVPELALLRIEVREYDMS-EKDDFGGQTCLPVSELRP 572 (599)
T ss_pred EEEEEcCCccEEEEEEEecCCC-CCCCeEEEEEcchhHhcC
Confidence 99988764 4699999999886 589999999999999964
No 226
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.45 E-value=1.1e-06 Score=96.79 Aligned_cols=117 Identities=21% Similarity=0.311 Sum_probs=90.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc--CCCCCeee-eEEEEEeeCC-ceEEEEEEEEecC
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWN-QKFELDEIGG-GECLMVKCYNEEI 558 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~--~t~nP~wn-e~f~f~v~~~-~~~L~i~V~d~~~ 558 (680)
-.|.|.|+.||.|+... .+...|||+|.+ +..+++|.++ +++||+|| |.|+|.+.++ -..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47899999999998433 466789999999 2345555554 99999999 9999999987 6789999999999
Q ss_pred C-CCceeEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEEEecCCCC
Q 005736 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEG 608 (680)
Q Consensus 559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~~~~~~~~ 608 (680)
+ ...|||++..|+..+..+- +-.+|.+.- -..+.+.++..++..+++
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~ 1196 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLESEE 1196 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccCccc
Confidence 9 5679999999999887553 345676642 255677777776655544
No 227
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.44 E-value=1.2e-07 Score=103.25 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=65.1
Q ss_pred CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEECC-------eEEeeeeeecCCC
Q 005736 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKLTVACLS 663 (680)
Q Consensus 591 ~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg~-------~~~kT~~~k~tln 663 (680)
.|.+.+++.|. -....|.|.|+.|+|+.+.|.+|.+||||.|.++. ...||+++++|+|
T Consensus 933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn 998 (1103)
T KOG1328|consen 933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN 998 (1103)
T ss_pred CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence 58888888887 55578999999999999999999999999999975 3689999999999
Q ss_pred CcccceeEEEecCC
Q 005736 664 GHIQNSKSSMASNL 677 (680)
Q Consensus 664 P~wnE~f~f~V~n~ 677 (680)
|+|+|+|+|.|.-.
T Consensus 999 PVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 999 PVFDETFEFSVPPE 1012 (1103)
T ss_pred chhhhheeeecCcc
Confidence 99999999998643
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.40 E-value=1.7e-06 Score=96.26 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=71.7
Q ss_pred eEEEEEEEecCCCCC--CCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCcccee
Q 005736 295 GIVYVRVISASKLSR--SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSM 366 (680)
Q Consensus 295 G~L~V~v~~a~~L~~--~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~ 366 (680)
..|+|+|+.|.++.- ...... +...+||||+|.+- ..+++|++ .++.||.|||+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~------------------~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~ 513 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFD------------------QYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEV 513 (581)
T ss_pred ceEEEEEEEcccccCCCCccccC------------------CCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCe
Confidence 579999999987531 111110 01136999999985 34678887 77789999999
Q ss_pred EEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 367 FNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 367 f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
|.|.+.-+. ..|+|.|+|+|.. ..|+++|++.+|+..|..
T Consensus 514 f~F~i~~PeLAllRf~V~d~D~~-~~ddfigq~~lPv~~Lr~ 554 (581)
T PLN02222 514 FEFPLTVPELALLRLEVHEYDMS-EKDDFGGQTCLPVWELSQ 554 (581)
T ss_pred eEEEEEcCceeEEEEEEEECCCC-CCCcEEEEEEcchhhhhC
Confidence 999988765 4699999999875 589999999999999964
No 229
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.31 E-value=1.8e-07 Score=101.84 Aligned_cols=87 Identities=24% Similarity=0.421 Sum_probs=78.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEeeecc-CCCCCeeeeEEEEEeeCC-----ceEEEEEEEE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-------IVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYN 555 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~~T~~~-~t~nP~wne~f~f~v~~~-----~~~L~i~V~d 555 (680)
.|.|.|+.|+++.+.|.+|.+||||.|.++. ..++|+++ +|+||+|+|.|+|.|+.. ...|.|+|+|
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMD 1027 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMD 1027 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeec
Confidence 6889999999999999999999999999953 47899999 999999999999998852 4589999999
Q ss_pred ecCC-CCceeEEEEEEccccc
Q 005736 556 EEIF-GDENMGSARVNLEGLV 575 (680)
Q Consensus 556 ~~~~-~d~~iG~~~i~L~~l~ 575 (680)
+|-. .++|-|++.+.|.++.
T Consensus 1028 HD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1028 HDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cceecccccchHHHHhhCCCC
Confidence 9988 8999999999999876
No 230
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.30 E-value=7.9e-07 Score=101.61 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=88.6
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEe
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNE 556 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~ 556 (680)
.+.|.|-|.-+++|+-...+..+||||+.++- ..+.||+++ +|.||.|||...+.-.. .+..|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 45899999999999776667889999999992 367899999 99999999999887332 367899999999
Q ss_pred cCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736 557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (680)
Q Consensus 557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (680)
+.. .+.++|.+.|+|.++........||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 988 889999999999998877777799999764
No 231
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.28 E-value=2.9e-06 Score=93.75 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=71.3
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCCccc-ee
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDPRWD-SM 366 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP~Wn-e~ 366 (680)
=.|.|+|+.||+|+....+- +-|+|+|.+-+ ..++|.+ .|++||+|| |+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i-----------------------~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ 1121 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSI-----------------------ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEK 1121 (1267)
T ss_pred eEEEEEEeeccccccCCCCc-----------------------cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcc
Confidence 47889999999999543211 35999998742 2344445 799999999 99
Q ss_pred EEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 367 FNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 367 f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
|+|.+.++. ..|+|.|+|.|-. +...|||++.+|++.+..
T Consensus 1122 ftFeI~nPe~A~lRF~V~eeDmf-s~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1122 FTFEIYNPEFAFLRFVVYEEDMF-SDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred eEEEeeCCceEEEEEEEeccccc-CCcceeeeeecchhhhhc
Confidence 999999985 5799999999986 567899999999998853
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.25 E-value=4.8e-06 Score=92.39 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=71.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc-ceeE
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW-DSMF 367 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W-ne~f 367 (680)
..|+|+|++|++|+..-..... + .....||||+|.+-+ ..++|++ .++.||.| ||+|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~---------~-------~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f 494 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHF---------D-------QYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEF 494 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCC---------C-------CCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeE
Confidence 4699999999987421000000 0 001259999998852 3568887 67899999 9999
Q ss_pred EEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 368 NMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 368 ~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
.|.+..+. ..|+|.|+|+|.. ..|+++|++.+|+..|..
T Consensus 495 ~F~~~~pELA~lRf~V~D~d~~-~~d~figq~~lPv~~Lr~ 534 (567)
T PLN02228 495 LFQLRVPELALLWFKVQDYDND-TQNDFAGQTCLPLPELKS 534 (567)
T ss_pred EEEEEcCceeEEEEEEEeCCCC-CCCCEEEEEEcchhHhhC
Confidence 99988765 4699999999865 589999999999999964
No 233
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.24 E-value=9.8e-06 Score=87.86 Aligned_cols=176 Identities=21% Similarity=0.340 Sum_probs=119.9
Q ss_pred eecc-CCCCCCccceeEEEEEec-CCCeEEEEEEEeCCCC---CCCceeEEEEEecccccCCCceeeeeCCCcchhhhhh
Q 005736 352 RTDA-RPGSDPRWDSMFNMVLHE-ETGTVRFNLYECIPGH---VKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHA 426 (680)
Q Consensus 352 ~T~v-~~t~nP~Wne~f~~~v~~-~~~~l~l~v~d~d~~~---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 426 (680)
+|.+ .+.+||.|.+.|.+...- ..|.+++.++|.+... ...+++|+++..+..+...... ....
T Consensus 44 rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----------~~~l 112 (529)
T KOG1327|consen 44 RTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----------TGPL 112 (529)
T ss_pred ceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----------hhhh
Confidence 5554 899999999999887654 4789999999977641 3679999999999988643210 0000
Q ss_pred hccCceeeeeeccCCCceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCC
Q 005736 427 EFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKS 506 (680)
Q Consensus 427 ~~~g~~~~~~~~l~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~ 506 (680)
+-.+-.....|.+.+... +.. .......-..+|++|..++..
T Consensus 113 --------~~~~~~~~~~g~iti~ae-------e~~-----------------------~~~~~~~~~~~~~~ld~kd~f 154 (529)
T KOG1327|consen 113 --------LLKPGKNAGSGTITISAE-------EDE-----------------------SDNDVVQFSFRAKNLDPKDFF 154 (529)
T ss_pred --------hcccCccCCcccEEEEee-------ccc-----------------------ccCceeeeeeeeeecCccccc
Confidence 000001222455554431 000 000233334568999999999
Q ss_pred CCCCcEEEEEEC------CEEEeeecc-CCCCCeeeeEEE----EEeeCCceEEEEEEEEecCC-CCceeEEEEEEcccc
Q 005736 507 GKCDPYVKLQYG------KIVQRTRTA-HSPNHVWNQKFE----LDEIGGGECLMVKCYNEEIF-GDENMGSARVNLEGL 574 (680)
Q Consensus 507 ~~~dpyv~v~l~------~~~~~T~~~-~t~nP~wne~f~----f~v~~~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l 574 (680)
+++|||..++-- ...++|.++ ++++|.|.+... +...++...+.+.+||++.. ++++||.+..++.++
T Consensus 155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSEL 234 (529)
T ss_pred ccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHh
Confidence 999999998861 257899999 999999975322 11223467899999999988 779999999999887
Q ss_pred cC
Q 005736 575 VE 576 (680)
Q Consensus 575 ~~ 576 (680)
..
T Consensus 235 ~~ 236 (529)
T KOG1327|consen 235 QE 236 (529)
T ss_pred cc
Confidence 53
No 234
>PLN02352 phospholipase D epsilon
Probab=98.17 E-value=2.5e-05 Score=88.82 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=88.2
Q ss_pred cEEEEEEEEeecCCCC----C-CCCCCCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCCc-eEEEEEEEEecCCC
Q 005736 488 RKINVTVVEGKDLMPK----D-KSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIFG 560 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~----~-~~~~~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~~ 560 (680)
|.|.++|.+|+-+... . .....+|||.|.+++ .+.|| .+..||.|+|.|.+.+.... ..+.|.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~---- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKTK---- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEecC----
Confidence 5899999999843221 0 012239999999965 67788 52349999999999998765 6899999883
Q ss_pred CceeEEEEEEcccccCCCe-eeEEEeCCCCC----C-eEEEEEEEEEEecCC
Q 005736 561 DENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN 606 (680)
Q Consensus 561 d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~i~l~l~~~~~~~~ 606 (680)
..+||.+.+|..++..+.. .+.|+++.+.. . .+|+++++|.++...
T Consensus 84 ~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 84 CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 6799999999999988755 89999997642 3 499999999987654
No 235
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.09 E-value=1.8e-05 Score=85.80 Aligned_cols=135 Identities=21% Similarity=0.235 Sum_probs=100.8
Q ss_pred EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-----CCceeEEEEEEcccccCCCeeeEEEeCC---CC
Q 005736 520 IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLE---KV 589 (680)
Q Consensus 520 ~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-----~d~~iG~~~i~L~~l~~~~~~~~w~~L~---~~ 589 (680)
+..+|.++ +.+||.|.+.|.....- ..+.+++.++|-+.. ..+|+|++...+..+........-+.++ ..
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~ 120 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA 120 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence 45588899 99999999998877553 478899999997653 5789999999999887544332223333 23
Q ss_pred CCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEEC--C----eEEeeeeeecCCC
Q 005736 590 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKLTVACLS 663 (680)
Q Consensus 590 ~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg--~----~~~kT~~~k~tln 663 (680)
.+|.|.++++-. ...........+|++|.+.|..+++|||..++-- . ..++|.++++|+|
T Consensus 121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~ 186 (529)
T KOG1327|consen 121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN 186 (529)
T ss_pred CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence 568888877433 1122344445579999999999999999999873 2 4789999999999
Q ss_pred Ccccc
Q 005736 664 GHIQN 668 (680)
Q Consensus 664 P~wnE 668 (680)
|.|-+
T Consensus 187 p~w~~ 191 (529)
T KOG1327|consen 187 PQWAP 191 (529)
T ss_pred Ccccc
Confidence 99954
No 236
>PLN02352 phospholipase D epsilon
Probab=97.95 E-value=6.3e-05 Score=85.63 Aligned_cols=116 Identities=15% Similarity=0.237 Sum_probs=80.0
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeeccCCCCCCccceeEEEEEe
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLH 372 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v~~t~nP~Wne~f~~~v~ 372 (680)
-|.|.++|.+|+-+... ..... ..+ ...|||++|.+++ ...+| .+..||+|+|+|.+.+.
T Consensus 9 hg~l~~~i~~~~~~~~~-~~~~~---------------~~~-~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~a 69 (758)
T PLN02352 9 HGTLEATIFDATPYTPP-FPFNC---------------IFL-NGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCA 69 (758)
T ss_pred ccceEEEEEEeeehhhc-ccccc---------------ccc-CCCCceEEEEeCCcEEecC--CCCCCCccccceeEEee
Confidence 49999999999832221 00000 000 0129999999985 45677 55669999999999998
Q ss_pred cCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----ee-e
Q 005736 373 EET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SG-E 446 (680)
Q Consensus 373 ~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G-~ 446 (680)
... ..+.|.|.| ...+||++.+|..++..+. ...+.|+++.+.+ .| .
T Consensus 70 h~~~~~~~f~vk~------~~~~ig~~~~p~~~~~~g~---------------------~~~~~~~~~~~~~~~p~~~~~ 122 (758)
T PLN02352 70 HPLDSTITITLKT------KCSILGRFHIQAHQIVTEA---------------------SFINGFFPLIMENGKPNPELK 122 (758)
T ss_pred eecCCcEEEEEec------CCeEEEEEEEEHHHhhCCC---------------------cccceEEEcccCCCCCCCCCE
Confidence 876 689999976 3689999999999986431 1256677775433 34 6
Q ss_pred EEEEEEEee
Q 005736 447 LTVRLVLKE 455 (680)
Q Consensus 447 l~~~l~l~~ 455 (680)
+++++.+.+
T Consensus 123 ~~~~~~~~~ 131 (758)
T PLN02352 123 LRFMLWFRP 131 (758)
T ss_pred EEEEEEEEE
Confidence 777776654
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.82 E-value=3.7e-05 Score=67.47 Aligned_cols=97 Identities=21% Similarity=0.324 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCC-------C------CCCCCcEEEEEE----CCEEEeeecc-CCCCCeeeeEEEEEeeC-------
Q 005736 490 INVTVVEGKDLMPKD-------K------SGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEIG------- 544 (680)
Q Consensus 490 L~V~I~~a~~L~~~~-------~------~~~~dpyv~v~l----~~~~~~T~~~-~t~nP~wne~f~f~v~~------- 544 (680)
|.|.|++|.+|+..- . .-..|+||++.+ +++..+|+++ ++-.|.|+..++|.+.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 356777777775211 0 123689999997 5688999999 99999999999999761
Q ss_pred ---------CceEEEEEEEEecCC-----------CCceeEEEEEEcccccC-CCeeeEEEeC
Q 005736 545 ---------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVE-GSVRDIWVPL 586 (680)
Q Consensus 545 ---------~~~~L~i~V~d~~~~-----------~d~~iG~~~i~L~~l~~-~~~~~~w~~L 586 (680)
....+.++||+.... +|-.||.+.||+.+|.. ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 134799999997642 45689999999999884 5566789875
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.71 E-value=3e-05 Score=89.16 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=60.1
Q ss_pred CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEECC-----eEEeeeeeecCCCCc
Q 005736 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKLTVACLSGH 665 (680)
Q Consensus 591 ~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg~-----~~~kT~~~k~tlnP~ 665 (680)
+|+|+++++|. .|.|.|.|..|++|+-...+..+||||+.++-. .|+||+++++|+||.
T Consensus 1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence 57999999996 489999999999998877778899999999943 489999999999999
Q ss_pred ccceeEEE
Q 005736 666 IQNSKSSM 673 (680)
Q Consensus 666 wnE~f~f~ 673 (680)
|||.+.|.
T Consensus 1576 fnE~LvY~ 1583 (1639)
T KOG0905|consen 1576 FNEMLVYD 1583 (1639)
T ss_pred hhhheeec
Confidence 99999875
No 239
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.65 E-value=3.9e-05 Score=62.44 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=68.3
Q ss_pred EEEEEEeecCCCCC-CCCCCCcEEEEEE--C-CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCCCCc
Q 005736 491 NVTVVEGKDLMPKD-KSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE 562 (680)
Q Consensus 491 ~V~I~~a~~L~~~~-~~~~~dpyv~v~l--~-~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~~d~ 562 (680)
-+++++|+||.-.. ....+.-|++-.+ . ....+|.+. +..||.|.|+|.|.+.. +.-.|.|.|+.. ..+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-TPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-CCccc
Confidence 47899999995333 2344555666444 3 467899999 99999999999999764 366899999882 22789
Q ss_pred eeEEEEEEcccccCCCeeeEEEe
Q 005736 563 NMGSARVNLEGLVEGSVRDIWVP 585 (680)
Q Consensus 563 ~iG~~~i~L~~l~~~~~~~~w~~ 585 (680)
.||.|.+.|+++-. +...+|..
T Consensus 81 ~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCH-HHhhhhhc
Confidence 99999999998643 23445643
No 240
>PLN02964 phosphatidylserine decarboxylase
Probab=97.56 E-value=0.00012 Score=82.88 Aligned_cols=85 Identities=19% Similarity=0.348 Sum_probs=71.0
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEE-EEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFV-EIELEELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv-~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
.|++.+++++|+ ++. .|||. .+++|.+.++|.+ ++|.||+|||...|+|
T Consensus 53 ~~~~~~~~~~~~----~~~-------------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~ 103 (644)
T PLN02964 53 SGIALLTLVGAE----MKF-------------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLL 103 (644)
T ss_pred cCeEEEEeehhh----hcc-------------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEe
Confidence 499999999997 332 16755 5678999999999 7999999999999999
Q ss_pred ecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 372 HEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 372 ~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
.... ...++.|||.++. .+++.+|.|+++|.++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~-s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 104 EKNGPHLARISVFETNRL-SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred ccCCcceEEEEEEecCCC-CHHHhhhheeecHhhccHH
Confidence 8763 4579999999987 6999999999998777544
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.27 E-value=0.00039 Score=61.20 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=70.0
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc----ceeeeecc-CCCCCCccceeEEEEE
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDA-RPGSDPRWDSMFNMVL 371 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~----~~~~~T~v-~~t~nP~Wne~f~~~v 371 (680)
|.|.|++|.+|+.....-.. .|+..+.. .+--+++||++.+. +..++|++ -++--|.|+.+++|..
T Consensus 1 lsv~I~RA~GLqaAA~~la~--------~~~~l~y~-a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc 71 (143)
T cd08683 1 LSVQIHRASGLQAAARALAE--------QDPSLQYS-ATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPC 71 (143)
T ss_pred CeEEeehhhhHHHHHHHHhh--------hCcccccc-eecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEec
Confidence 46889999999764321100 11111111 12236899999964 56788887 7999999999999985
Q ss_pred e--------c--------CCCeEEEEEEEeCCCC---------CCCceeEEEEEecccccCC
Q 005736 372 H--------E--------ETGTVRFNLYECIPGH---------VKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 372 ~--------~--------~~~~l~l~v~d~d~~~---------~~d~~lG~~~i~l~~l~~~ 408 (680)
. + ....+.|+||+.+..+ .+|-.||.+.||+.+|...
T Consensus 72 ~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 72 NLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 5 1 1346899999977542 2567899999999999643
No 242
>PLN02964 phosphatidylserine decarboxylase
Probab=97.05 E-value=0.00075 Score=76.52 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CC
Q 005736 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK-LQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GD 561 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~-v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d 561 (680)
-.|++.+++++|+ ++ ..|+|.. +.+|.++++|.+. +|.||+||+...|.+... ....+|.|||.+.+ ++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence 3569999999987 22 2478765 5569999999999 999999999999998763 45579999999998 89
Q ss_pred ceeEEEEEEcccccCCC
Q 005736 562 ENMGSARVNLEGLVEGS 578 (680)
Q Consensus 562 ~~iG~~~i~L~~l~~~~ 578 (680)
+++|.|.++|.++...+
T Consensus 125 ~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 125 TLVGYCELDLFDFVTQE 141 (644)
T ss_pred HhhhheeecHhhccHHH
Confidence 99999999988776443
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.03 E-value=0.025 Score=59.51 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=123.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--------CceEEEEEEEEecCC-
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF- 559 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--------~~~~L~i~V~d~~~~- 559 (680)
+.+.|++|++.+... ...-.+...++++...|..+ ++..|.||....+.+.. ....|++++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998652 34567888899999999999 99999999999998763 356899999998833
Q ss_pred -CCceeEEEEEEcccc---cCC--CeeeEEEeCCCC------CCeEEEEEEEEEEecCC-------------CCCCC---
Q 005736 560 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-------------EGSRG--- 611 (680)
Q Consensus 560 -~d~~iG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~i~l~l~~~~~~~~-------------~~~~~--- 611 (680)
..+.+|++.++|... ..+ .....||+|-+. .+-+|.+.+....-... ++...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 788999999999998 443 467899999765 24677777765432211 00000
Q ss_pred ---------------------ccCC-----CCCceEEEEEEEeecCcccc----C--CCCCCCEEEEEECCeEEeeeeee
Q 005736 612 ---------------------QNIG-----SGNGWIELVIVEARDLVAAD----L--RGTSDPYVKVQYGDLKKRTKLTV 659 (680)
Q Consensus 612 ---------------------~~~~-----~~~~~L~V~I~~a~~L~~~d----~--~g~~DPyV~v~lg~~~~kT~~~k 659 (680)
-..+ .....|.|+|..|+||..+- . .+...-|...++-+....|..-+
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 0011 12357888999999987651 1 12345566666656566677777
Q ss_pred cCCCCccc
Q 005736 660 ACLSGHIQ 667 (680)
Q Consensus 660 ~tlnP~wn 667 (680)
+..+|.|-
T Consensus 239 ~l~~~~f~ 246 (340)
T PF12416_consen 239 SLSSPSFP 246 (340)
T ss_pred ccCCCCcC
Confidence 77788553
No 244
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0004 Score=71.53 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=85.8
Q ss_pred CCcEEEEEEEEeecCCCCCC-CCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEec-
Q 005736 486 TGRKINVTVVEGKDLMPKDK-SGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEE- 557 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~- 557 (680)
..|.+.|.|++|++|..+.. ...++|||+|++ ++ .+.+|+.. +|.+|.|.+...|.-..+...|.+.||-.-
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 45689999999999965543 237999999999 22 46788888 999999988888888888999999999654
Q ss_pred CC-CCceeEEEEEEcccccCCC-eeeEEEeCCCC
Q 005736 558 IF-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV 589 (680)
Q Consensus 558 ~~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~ 589 (680)
.. ++.|+|.+.+-+.++..+. ....||+|-+.
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 34 7889999999999988655 77899999763
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.64 E-value=0.0014 Score=68.08 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=90.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CEEEeeecc-CCCCCeeeeEEEEEeeCC------------ceEEE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---G--KIVQRTRTA-HSPNHVWNQKFELDEIGG------------GECLM 550 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~--~~~~~T~~~-~t~nP~wne~f~f~v~~~------------~~~L~ 550 (680)
.|.+.|.++.+++........|.|+++.+ + .+..+|.++ .|.+|.|+|.|.+.+... ...+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 67888888888865544445678888887 2 367788888 999999999999998751 23689
Q ss_pred EEEEEecCC--CCceeEEEEEEcccccCCCeeeEEEeCCCC---CCeEEEEEEEEE
Q 005736 551 VKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEAT 601 (680)
Q Consensus 551 i~V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~---~~G~i~l~l~~~ 601 (680)
|++|+...+ .|.++|.+++.|.-|...-.....++|.+. ..|.|.+.+...
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999999988 899999999999998877667778888763 358888888766
No 246
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.39 E-value=0.59 Score=49.37 Aligned_cols=231 Identities=10% Similarity=0.091 Sum_probs=137.5
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec--
Q 005736 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE-- 373 (680)
Q Consensus 297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~-- 373 (680)
+.|+|++|++.+.... -.-.+..++++....|.. ..+..|.||....-.++.
T Consensus 2 ivl~i~egr~F~~~~~-------------------------~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~ 56 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR-------------------------HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKA 56 (340)
T ss_pred EEEEEecccCCCCCCC-------------------------ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHH
Confidence 5789999999987631 145788889988888886 678899999988777653
Q ss_pred ----C--CCeEEEEEEEeCCCCCCCceeEEEEEecccc---cCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC--
Q 005736 374 ----E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV---ADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-- 442 (680)
Q Consensus 374 ----~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-- 442 (680)
. ...+.+++|..|....+-+.+|.+.+||... ..... .....|++|-+.
T Consensus 57 l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~--------------------~~~~~W~~LL~~~~ 116 (340)
T PF12416_consen 57 LKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQ--------------------KQKPKWYKLLSSSS 116 (340)
T ss_pred HHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccccccccc--------------------ccCCCeeEcccccc
Confidence 1 3469999999984446889999999999987 22100 122346665443
Q ss_pred ----ceeeEEEEEEEeeeecC-CCCCC----CCCCc-CC---------CCCccc------------ccccccCCCCcEEE
Q 005736 443 ----NSGELTVRLVLKEWQFS-DGSHS----LNNFH-SG---------SQQSLS------------GSSNFISRTGRKIN 491 (680)
Q Consensus 443 ----~~G~l~~~l~l~~~~~~-~~~~~----~~~~~-~~---------~~~~~~------------~~~~~~~~~~~~L~ 491 (680)
.+-++.+.+.+...... ..... ..... .+ ....+. +.++. ......|.
T Consensus 117 ~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~-~~d~FvLs 195 (340)
T PF12416_consen 117 KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDL-CCDLFVLS 195 (340)
T ss_pred ccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcccccccCccceeEEEccCCceEeeCCchh-cCceEEEE
Confidence 13567777665432211 00000 00000 00 000000 00011 12346788
Q ss_pred EEEEEeecCCCCC----CC--CCCCcEEEEEECCEEEeeecc-CCCCCeee--eEEEEEeeC----------CceEEEEE
Q 005736 492 VTVVEGKDLMPKD----KS--GKCDPYVKLQYGKIVQRTRTA-HSPNHVWN--QKFELDEIG----------GGECLMVK 552 (680)
Q Consensus 492 V~I~~a~~L~~~~----~~--~~~dpyv~v~l~~~~~~T~~~-~t~nP~wn--e~f~f~v~~----------~~~~L~i~ 552 (680)
|++..|+||...- .. +...-|....+-+....|... ...+|.|. +.--+.+.. ....|.|.
T Consensus 196 vti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~ 275 (340)
T PF12416_consen 196 VTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIH 275 (340)
T ss_pred EehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEE
Confidence 9999999986441 11 223445555554445555555 66677653 333244442 13467777
Q ss_pred EEEecCCCCceeEEEEEEcccccCC
Q 005736 553 CYNEEIFGDENMGSARVNLEGLVEG 577 (680)
Q Consensus 553 V~d~~~~~d~~iG~~~i~L~~l~~~ 577 (680)
++.. +..||.+.+++..+...
T Consensus 276 Lc~g----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 276 LCCG----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred EeeC----CcEEEEEEEEhhhccCC
Confidence 7764 67899999999998643
No 247
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.26 E-value=0.005 Score=50.44 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=60.3
Q ss_pred EEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEE--EEc-ceeeeecc-CCCCCCccceeEEEEEec
Q 005736 298 YVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEI--ELE-ELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 298 ~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v--~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
-|+|+.+++|.-....|.. +.-|++- .+. ....+|++ +...||+++|+|.|.+.-
T Consensus 2 witv~~c~d~s~~~~~~e~---------------------~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l 60 (103)
T cd08684 2 WITVLKCKDLSWPSSCGEN---------------------PTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKL 60 (103)
T ss_pred EEEEEEecccccccccCcC---------------------CeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHH
Confidence 4788899988654332321 1235533 333 45788888 688999999999998764
Q ss_pred C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 374 E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 374 ~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
. +-.|.|.|+..- .+.+.||.|.+.+.++-.
T Consensus 61 ~qL~~V~L~fsv~~~~---~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 61 QNLQTVRLVFKIQTQT---PRKRTIGECSLSLRTLST 94 (103)
T ss_pred hhccceEEEEEeeccC---CccceeeEEEeecccCCH
Confidence 3 336888888732 478999999999998743
No 248
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.31 E-value=0.025 Score=64.29 Aligned_cols=92 Identities=26% Similarity=0.368 Sum_probs=71.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CEEEeeecc--CCCCCeeee-EEEEE--eeCCceEEEEEEE
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA--HSPNHVWNQ-KFELD--EIGGGECLMVKCY 554 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-------~~~~~T~~~--~t~nP~wne-~f~f~--v~~~~~~L~i~V~ 554 (680)
.+.+.|+|+++.-|..++ ...||+|.+- ...++|++. ++.||+|+| .|.|. +.+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 468999999999997655 4589999992 257889988 999999996 47787 3334678999999
Q ss_pred EecCCCCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736 555 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (680)
Q Consensus 555 d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~ 588 (680)
+.. ..+||+-.+|+..+..+..+ +.|..
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GYrh---v~LRs 805 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGYRH---VCLRS 805 (1189)
T ss_pred ccC---CceeeeeccchhcccCccee---EEecC
Confidence 985 68999999999988765432 44544
No 249
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.29 E-value=0.73 Score=42.34 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=80.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE---EEeeecc--CCCCCeeeeEEEEEeeC---------CceEEEEEE
Q 005736 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---------GGECLMVKC 553 (680)
Q Consensus 488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~T~~~--~t~nP~wne~f~f~v~~---------~~~~L~i~V 553 (680)
..+.++|++..+++. ....-||+...++. ..+|... ..-.-.|||.|.+.+.- ....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 468899999999875 22334555555544 3566655 66678899999998642 134788999
Q ss_pred EEecCC-CCceeEEEEEEcccccCC--CeeeEEEeCCCC--CCeEEEEEEEEEEecCC
Q 005736 554 YNEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVDDN 606 (680)
Q Consensus 554 ~d~~~~-~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~i~l~l~~~~~~~~ 606 (680)
+..... +...+|.+.++|+++... .....-++|... ....+.+++.+..+...
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 887533 336999999999998863 456677888765 34678888887765543
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.28 E-value=0.19 Score=46.55 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=65.3
Q ss_pred CCcEEEEEEEEeecCCCC-C-CCCCCCcEEEEEE--CCEEEeeecc-CCCCCeeeeEEEEEeeCC--------------c
Q 005736 486 TGRKINVTVVEGKDLMPK-D-KSGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------G 546 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~-~-~~~~~dpyv~v~l--~~~~~~T~~~-~t~nP~wne~f~f~v~~~--------------~ 546 (680)
....|.++|..++-.... + ..+..+.-..+++ ++|.++|+.+ .+.+|.|+|.|.|.+... .
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 345799999998765321 1 1134455555544 8999999999 999999999999997642 2
Q ss_pred eEEEEEEEEecCC-CCceeEEEEEEcccccCCC
Q 005736 547 ECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS 578 (680)
Q Consensus 547 ~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~ 578 (680)
+.+.+.|...+.. ...++|+..++...+....
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 3677777777655 4478888777777665443
No 251
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.12 E-value=0.14 Score=48.88 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=68.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEec
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEE 557 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~ 557 (680)
.++|+|+.+.++... ....+-||++.+ |++ ...|+.+ ....+.|||.+.|++. + ....|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 699999999999762 244666777655 654 3466666 5678999999999865 2 3789999999975
Q ss_pred CC-----------------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736 558 IF-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI 598 (680)
Q Consensus 558 ~~-----------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l 598 (680)
.. .+..||.+.++|-+... .|. +|...+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~Lr---~G~~~L~l 133 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QLK---TGDHTLYM 133 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccc--------hhh---cCCeEEEe
Confidence 32 13588999888876321 122 57777766
No 252
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.02 E-value=0.17 Score=47.40 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=68.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EeeeccCCCCCeeeeEEEEEee--C--CceEEEEEEEEecC
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV----QRTRTAHSPNHVWNQKFELDEI--G--GGECLMVKCYNEEI 558 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~ 558 (680)
.++|+|+++.++...+ ..+-||++.+ |++. ..|+.+...++.|||...|++. + ....|.|+||+...
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 5899999999987543 4578888866 5543 3455553368999999999865 2 37899999999764
Q ss_pred C-----CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEE
Q 005736 559 F-----GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 599 (680)
Q Consensus 559 ~-----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~ 599 (680)
. ....+|.++++|-+... .|. +|...+.+.
T Consensus 86 ~~~~k~~~~~iG~~ni~LFd~~~--------~Lr---~G~~~L~lW 120 (158)
T cd08398 86 RKGAKEEHCPLAWGNINLFDYTD--------TLV---SGKMALNLW 120 (158)
T ss_pred ccCCCCceEEEEEEEEEEECCCC--------hhh---CCCEEEEEE
Confidence 2 12469999999887321 122 577777774
No 253
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=94.01 E-value=0.053 Score=56.82 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=56.6
Q ss_pred CCCeEEEEEEc-----ceeeeecc-CCCCCCccceeEEEEEec---C---------CCeEEEEEEEeCCCCCCCceeEEE
Q 005736 337 DLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMFNMVLHE---E---------TGTVRFNLYECIPGHVKYDYLTSC 398 (680)
Q Consensus 337 ~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f~~~v~~---~---------~~~l~l~v~d~d~~~~~d~~lG~~ 398 (680)
..|-|+.+++- .+..+|.+ ++|..|.|+|.|.+.+.. . ...+.|++|+...+..+|.++|.|
T Consensus 387 hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~ 466 (523)
T KOG3837|consen 387 HLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTG 466 (523)
T ss_pred hHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceecee
Confidence 46888888764 34556666 799999999999998875 1 235899999988777799999999
Q ss_pred EEeccccc
Q 005736 399 EVKMKYVA 406 (680)
Q Consensus 399 ~i~l~~l~ 406 (680)
.+.|.-|.
T Consensus 467 nikle~Le 474 (523)
T KOG3837|consen 467 NIKLEILE 474 (523)
T ss_pred eeeehhhh
Confidence 99998885
No 254
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=93.92 E-value=0.14 Score=56.79 Aligned_cols=195 Identities=14% Similarity=0.200 Sum_probs=118.3
Q ss_pred hhhHHHHHHhhcccCc-----hHHHHHHHHHHHHHHHhhc-CCCccceEEEeEEeeCCCCCeeeeEEEEECC--------
Q 005736 102 CEWLNKLLMEVWPGYI-----NPKLSIRFSQIVEKRLKHR-KPRLIEKIELQEFSLGSTSPCLGLHGTRWSS-------- 167 (680)
Q Consensus 102 ~eWlN~~l~~~W~~~~-----~~~~~~~i~~~v~~~l~~~-~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~-------- 167 (680)
+-.+|.++.......- ..++-+......+.++... .-..++.+.+.++.||.+-|.+++.+++.-.
T Consensus 101 c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~ 180 (1051)
T KOG3532|consen 101 CNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFLKY 180 (1051)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHHHh
Confidence 3345666666665311 1122222223333333332 2357999999999999999999999988510
Q ss_pred -----------C-----CCeEEEEEEEEEecCCeEEEEEEEecCCcce-eeEEEEEeEEEEEEEEE----eeeeCCcEEE
Q 005736 168 -----------S-----GDQRVMQLGFDWDANDISILLLAKLAKPLLG-TAKIVINSLHIKGDLLV----MPILEGKAVL 226 (680)
Q Consensus 168 -----------~-----~~~~~ld~~~~~~~~~~~i~l~~~~~~~~~g-~~~v~v~~~~~~g~~Rv----~P~~~~~~v~ 226 (680)
+ -..+.+=.++.|.|++ .-++.+..- .+ ...++|+-.+++|.+|+ .|+-++ +
T Consensus 181 ~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~f-Ttsid~~s~---~~kk~S~~iKl~~l~Gm~r~~~~r~py~hw---~ 253 (1051)
T KOG3532|consen 181 AQTSKHRFILSPVNVYCIQKIVFILDIDYSGGF-TTSIDVSTI---IAKKASLSVKITKLTGMVRVILSRQPYHHW---T 253 (1051)
T ss_pred hhhhhhhcccCCcceecccccccccccccCCCc-ceecCCccc---cccCCceeEEEEEeccceeEEEEeccceee---e
Confidence 0 1234555677888864 222222211 22 34677888899999999 566532 5
Q ss_pred EEecCCCeEEEEEE--EcCCCCCccCcccCccHHHHHHHHHHHHHhhccccCcceEEecccc-------c------cccc
Q 005736 227 YSFVSIPDVRIGVA--FGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAV-------D------LRKK 291 (680)
Q Consensus 227 ~sf~~~P~id~~~~--~~~~~~~~~~i~~iP~l~~~i~~~i~~~~~~~~v~P~~~~~~l~~~-------~------~~~~ 291 (680)
++|++.|.+..+.+ +-+. -| --.|.+.|...|+.++.....|||+. +.+-+. . +..-
T Consensus 254 ~sf~G~P~~e~di~s~~qg~------qL-Q~~I~q~i~~~ir~~~~rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i 325 (1051)
T KOG3532|consen 254 FSFVGQPIFETDINSQIQGH------QL-QRLIPQIIKEAIRRSLQRKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHI 325 (1051)
T ss_pred eeeccCchhhhhhHHHHHHH------HH-HHHhHHHHHHHHHHHHHhhccCcchh-hhccccccCcccccCcchhhhhhe
Confidence 88999999876554 2111 00 12366778888888889999999975 222110 0 0111
Q ss_pred CcCeEEEEEEEecCCCCCCC
Q 005736 292 AVGGIVYVRVISASKLSRSS 311 (680)
Q Consensus 292 ~~~G~L~V~v~~a~~L~~~d 311 (680)
-+.|.+.|++.++..|....
T Consensus 326 ~~~G~~~V~~lE~srL~~~~ 345 (1051)
T KOG3532|consen 326 KMEGGIEVTVLECSRLKDKN 345 (1051)
T ss_pred eccCceeEeehhhhhhhccC
Confidence 23599999999998887543
No 255
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.61 E-value=0.5 Score=44.37 Aligned_cols=85 Identities=11% Similarity=0.196 Sum_probs=57.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeeccCCCCCCccceeEE
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDARPGSDPRWDSMFN 368 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v~~t~nP~Wne~f~ 368 (680)
.-++|+|++|.++.-.+. .|-||.+.+ |+. ...|+.....++.|||...
T Consensus 8 ~~~~v~i~~~~~~~~~~~-------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~ 62 (158)
T cd08398 8 SNLRIKILCATYVNVNDI-------------------------DKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLD 62 (158)
T ss_pred CCeEEEEEeeccCCCCCc-------------------------CeEEEEEEEEECCEEccCeeEecccCCCCCccceeEE
Confidence 568999999998875431 267887755 433 2344433347899999998
Q ss_pred EEEe--cC--CCeEEEEEEEeCCCCC---CCceeEEEEEeccc
Q 005736 369 MVLH--EE--TGTVRFNLYECIPGHV---KYDYLTSCEVKMKY 404 (680)
Q Consensus 369 ~~v~--~~--~~~l~l~v~d~d~~~~---~d~~lG~~~i~l~~ 404 (680)
|.+. +. +..|.|.+|+...... ....+|.+.++|=+
T Consensus 63 fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 63 YDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 8765 43 5579999999764211 22569999888755
No 256
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=0.071 Score=55.47 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=74.6
Q ss_pred hccccCcceEEecccccccccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--
Q 005736 271 KTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-- 348 (680)
Q Consensus 271 ~~~v~P~~~~~~l~~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-- 348 (680)
..+..|+.-.+.+.. -...|.|.|.|++|++|..+.-.+. .++|||+|.+-+
T Consensus 250 q~la~P~mg~iq~~~-----~d~~g~l~vEii~ar~l~~k~~~k~---------------------~~apyVkVYlL~~g 303 (405)
T KOG2060|consen 250 QTLAAPNMGDIQIAL-----MDSKGDLEVEIIRARGLVVKPGSKS---------------------LPAPYVKVYLLENG 303 (405)
T ss_pred hhhcCcccccchhhh-----hcccCceeEEEEecccccccCCccc---------------------ccCceeEEEEcCCC
Confidence 345567654333311 2345999999999999987653332 259999998742
Q ss_pred ---eeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEE-eCCCCCCCceeEEEEEecccccC
Q 005736 349 ---LTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYE-CIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 349 ---~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d-~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
.+.+|+. ++|.+|-+.....|.-......|.+.||. +.+. -.+.|+|.+.+-+.+|..
T Consensus 304 ~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRm-d~k~fmg~aqi~l~eL~l 366 (405)
T KOG2060|consen 304 FCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRM-DHKSFMGVAQIMLDELNL 366 (405)
T ss_pred ceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccccc-chHHHhhHHHHHhhhhcc
Confidence 2557776 78888888776555433445568888875 3332 377999999999988853
No 257
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.05 E-value=0.61 Score=43.73 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=60.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEec
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEE 557 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~ 557 (680)
.++|+++...+....+ ....+-||++.+ |++ ...|... ...++.|||...|.+. + .+..|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5788888888876511 234566777766 553 2344444 4478999999999854 2 3789999999987
Q ss_pred CC---CCceeEEEEEEcccc
Q 005736 558 IF---GDENMGSARVNLEGL 574 (680)
Q Consensus 558 ~~---~d~~iG~~~i~L~~l 574 (680)
.. .+..||.++++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 257999999998874
No 258
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.95 E-value=0.4 Score=45.09 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEecCC-CCceeEEEEEEcccc
Q 005736 507 GKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEEIF-GDENMGSARVNLEGL 574 (680)
Q Consensus 507 ~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l 574 (680)
..++-||++.+ +++ ..+|+.+ -+..+.|||...|++. + ....|.|+||+.+.. +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 44677887766 543 3366666 6677899999999865 2 378999999998765 567999999998874
Q ss_pred cCCCeeeEEEeCCCCCCeEEEEEEE
Q 005736 575 VEGSVRDIWVPLEKVNTGELRLQIE 599 (680)
Q Consensus 575 ~~~~~~~~w~~L~~~~~G~i~l~l~ 599 (680)
. + .| .+|...+.+.
T Consensus 108 ~-g-------~L---r~G~~~l~lw 121 (159)
T cd08397 108 D-G-------TL---RRGRQKLRVW 121 (159)
T ss_pred C-C-------cE---ecCCEEEEEE
Confidence 2 1 12 2577777773
No 259
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.24 E-value=0.87 Score=43.54 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=62.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE---Eeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEecC
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEEI 558 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~~---~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~ 558 (680)
.++|+|+.+.++.. +......-||++.+ |++. .+|... -+.++.|||...|.+. + ....|.|.||+...
T Consensus 11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 58888888874432 22233345666654 5543 266666 6678999999999865 2 37799999999632
Q ss_pred C-----------------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736 559 F-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI 598 (680)
Q Consensus 559 ~-----------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l 598 (680)
. .+..||.+.+.|-+... .| .+|+..+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~ 135 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHM 135 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEE
Confidence 1 14567777777765321 12 257777776
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=91.36 E-value=1.3 Score=42.31 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=56.2
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeeccC-CCCCCccceeE
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDAR-PGSDPRWDSMF 367 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v~-~t~nP~Wne~f 367 (680)
.-++|+|+.+.++.-.+. ..+-||++.+ |+. ...|+.. -..++.|||.+
T Consensus 8 ~~f~i~i~~~~~~~~~~~------------------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl 63 (173)
T cd08693 8 EKFSITLHKISNLNAAER------------------------TMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETL 63 (173)
T ss_pred CCEEEEEEEeccCccCCC------------------------CceEEEEEEEEECCEEccCceEccccCCCCccccceeE
Confidence 568999999999986221 1256777644 433 3355543 35679999999
Q ss_pred EEEEe--cC--CCeEEEEEEEeCCCC---------------CCCceeEEEEEeccc
Q 005736 368 NMVLH--EE--TGTVRFNLYECIPGH---------------VKYDYLTSCEVKMKY 404 (680)
Q Consensus 368 ~~~v~--~~--~~~l~l~v~d~d~~~---------------~~d~~lG~~~i~l~~ 404 (680)
.|.+. +. ...|.|.||+..... .++..||.+.++|=+
T Consensus 64 ~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 64 EFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 88754 43 457999999975421 124678887777654
No 261
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.90 E-value=2.8 Score=35.05 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736 509 CDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 509 ~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
.+..+.+.+++ .+.+|.-....+..|++.|.+.+. .+..|.|.||=+|. ..+-|...+.|.+... ..-.+|+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le 81 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME 81 (98)
T ss_pred cceEEEEEEcCeEEeeccccccccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence 56778888865 777887774467889999999887 56678888887663 3466777777887322 3334555
Q ss_pred CCCCeEEEEEEEE
Q 005736 588 KVNTGELRLQIEA 600 (680)
Q Consensus 588 ~~~~G~i~l~l~~ 600 (680)
+ +|.+...++|
T Consensus 82 p--qg~l~~ev~f 92 (98)
T cd08687 82 P--QLCLVAELTF 92 (98)
T ss_pred c--ccEEEEEEEe
Confidence 4 6877777765
No 262
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=90.57 E-value=0.54 Score=47.73 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCcEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-C
Q 005736 486 TGRKINVTVVEGKDLMPKD--KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G 560 (680)
Q Consensus 486 ~~~~L~V~I~~a~~L~~~~--~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~ 560 (680)
..|+|.++++.+++|.... .+-..+-||.+..+. ...||.+. ....-.|.|+|+..+.+ ...+.+-||.++.. +
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~R 127 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRR 127 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhh
Confidence 3469999999999995433 244568899998865 45677777 77777899999998763 44577778887765 3
Q ss_pred Cce--eEEEEEEcccccC-CCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736 561 DEN--MGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRLQIEAT 601 (680)
Q Consensus 561 d~~--iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G~i~l~l~~~ 601 (680)
+++ .| -+.+..+.. ++.+..-..|+. +|++.+++.+.
T Consensus 128 HKLC~~g--~l~~~~v~rqspd~~~Al~leP--rgq~~~r~~~~ 167 (442)
T KOG1452|consen 128 HKLCHLG--LLEAFVVDRQSPDRVVALYLEP--RGQPPLRLPLA 167 (442)
T ss_pred ccccccc--hhhhhhhhhcCCcceeeeeccc--CCCCceecccC
Confidence 333 44 233333322 223333344444 67777777554
No 263
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.96 E-value=1.5 Score=41.90 Aligned_cols=99 Identities=22% Similarity=0.268 Sum_probs=69.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----eeecc-----CCCCCeeeeEEEEEee--C--CceEEEEEE
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIVQ----RTRTA-----HSPNHVWNQKFELDEI--G--GGECLMVKC 553 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----~T~~~-----~t~nP~wne~f~f~v~--~--~~~~L~i~V 553 (680)
.+.|+|..+.+++........+-|+.+.+ |++.. .|+.. -...+.|||...|.+. + .+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68999999999987664456778888866 55432 44422 1235679999999865 2 378999999
Q ss_pred EEecCC----------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736 554 YNEEIF----------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI 598 (680)
Q Consensus 554 ~d~~~~----------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l 598 (680)
|+.... .+..||.++++|-+... .| .+|...+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~l 132 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGL 132 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEe
Confidence 997643 24689999999876321 12 257777777
No 264
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.84 E-value=4.2 Score=37.37 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=47.5
Q ss_pred Eeeecc-CC-CCCeeeeEEEEEee--C--CceEEEEEEEEecCC-CC----ceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736 522 QRTRTA-HS-PNHVWNQKFELDEI--G--GGECLMVKCYNEEIF-GD----ENMGSARVNLEGLVEGSVRDIWVPLEKVN 590 (680)
Q Consensus 522 ~~T~~~-~t-~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~~-~d----~~iG~~~i~L~~l~~~~~~~~w~~L~~~~ 590 (680)
..|+.. .+ .++.|||...|.+. + .+..|.|+||+.+.. .. ..||.+.++|-+.. +. |.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~-~~-------L~--- 90 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR-GQ-------LR--- 90 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT-SB-------BE---
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC-Cc-------cc---
Confidence 366666 54 79999999999965 2 488999999998876 33 69999999988752 11 11
Q ss_pred CeEEEEEEEEE
Q 005736 591 TGELRLQIEAT 601 (680)
Q Consensus 591 ~G~i~l~l~~~ 601 (680)
+|...+.+ |.
T Consensus 91 ~G~~~L~l-W~ 100 (142)
T PF00792_consen 91 QGPQKLSL-WP 100 (142)
T ss_dssp EEEEEEE--EE
T ss_pred CCCEEEEE-Ec
Confidence 47777777 54
No 265
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=89.51 E-value=3.8 Score=38.88 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=52.7
Q ss_pred CCCcEEEEEECC-EEEeeecc-C--CCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEccccc
Q 005736 508 KCDPYVKLQYGK-IVQRTRTA-H--SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLV 575 (680)
Q Consensus 508 ~~dpyv~v~l~~-~~~~T~~~-~--t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~ 575 (680)
...-|+++.+++ ++.+|+.. - ...-.|||.|.+.+...-..|.++||......+..|+.+.+|+-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 456788999955 66677766 3 22345789999999877788999999988778899999999987643
No 266
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.42 E-value=0.74 Score=52.99 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=59.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-------ceeeeecc--CCCCCCccce
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-------ELTRRTDA--RPGSDPRWDS 365 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-------~~~~~T~v--~~t~nP~Wne 365 (680)
+.+.|+|+++.-|..++. ..||+|.+- +..++|++ .|+.||+|+|
T Consensus 703 ~t~sV~VISgqFLSdrkv--------------------------gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~e 756 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV--------------------------GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEE 756 (1189)
T ss_pred eeEEEEEEeeeecccccc--------------------------CceEEEEecCCCchhhhhhhhhccccCCCCCccccc
Confidence 577899999888876553 359999874 23567776 4899999997
Q ss_pred e-EEEE--EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 366 M-FNMV--LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 366 ~-f~~~--v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
. |.|. |-..-..|+|.||+. ...++|+-.+|+..|..
T Consensus 757 epfvF~KVvLpeLA~lRiavyeE-----ggK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 757 EPFVFRKVVLPELASLRIAVYEE-----GGKFIGQRILPVDGLNA 796 (1189)
T ss_pred CCcccceecccchhheeeeeecc-----CCceeeeeccchhcccC
Confidence 4 5554 222235699999884 34799999999988853
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=89.34 E-value=1.5 Score=41.19 Aligned_cols=66 Identities=8% Similarity=0.139 Sum_probs=47.2
Q ss_pred CCeEEEEEE--cce----eeeecc-CCCCCCccceeEEEEEe--cC--CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 338 LTTFVEIEL--EEL----TRRTDA-RPGSDPRWDSMFNMVLH--EE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 338 ~dpyv~v~~--~~~----~~~T~v-~~t~nP~Wne~f~~~v~--~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
.|-||++.+ ++. ..+|+. .-+..+.|||...|.+. +. +..|.|.|||.+.. .+...+|.+.++|=+
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lFd 106 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLFN 106 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeEC
Confidence 377888866 333 234444 23566889999998865 43 55799999998764 367899999988755
No 268
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.06 E-value=2.4 Score=39.70 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=56.2
Q ss_pred eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeeccCC-CCCCccceeE
Q 005736 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDARP-GSDPRWDSMF 367 (680)
Q Consensus 295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v~~-t~nP~Wne~f 367 (680)
.-++|++....++...+. ...+-|+++.+ |+. ...|.... ..++.|||..
T Consensus 8 ~~~~i~i~~~~~~~~~~~-----------------------~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l 64 (156)
T cd08380 8 FNLRIKIHGITNINLLDS-----------------------EDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWL 64 (156)
T ss_pred CCeEEEEEeeccccccCC-----------------------CceeEEEEEEEEECCEEccCceeccCCcCCCCCccccee
Confidence 457788888777665110 01255666654 333 22333322 3789999999
Q ss_pred EEEEe--cC--CCeEEEEEEEeCCCC-CCCceeEEEEEecccc
Q 005736 368 NMVLH--EE--TGTVRFNLYECIPGH-VKYDYLTSCEVKMKYV 405 (680)
Q Consensus 368 ~~~v~--~~--~~~l~l~v~d~d~~~-~~d~~lG~~~i~l~~l 405 (680)
.|.+. +. +..|.|.+|+.+... .++..||.+.++|=+-
T Consensus 65 ~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 65 TFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 88754 43 457999999987642 1568999999987653
No 269
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=87.34 E-value=1.3 Score=41.08 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=45.8
Q ss_pred CCCceEEEEEEEeecCccccC--CCCCCCEEEEEE--CCeEEeeeeeecCCCCcccceeEEEecCC
Q 005736 616 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQY--GDLKKRTKLTVACLSGHIQNSKSSMASNL 677 (680)
Q Consensus 616 ~~~~~L~V~I~~a~~L~~~d~--~g~~DPyV~v~l--g~~~~kT~~~k~tlnP~wnE~f~f~V~n~ 677 (680)
+....|.+.|..++-.-..-. .|..+.-+.+++ ++++++|+.+.-+.+|.|+|.|-|.+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~ 71 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRD 71 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEeccc
Confidence 555678888888765532211 155555555544 89999999999999999999999998764
No 270
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.73 E-value=6.9 Score=37.88 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=42.4
Q ss_pred EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC--CC---ceeEEEEEEcc
Q 005736 520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--GD---ENMGSARVNLE 572 (680)
Q Consensus 520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~--~d---~~iG~~~i~L~ 572 (680)
..++|.+. ...+|.|+|++.+.++. .+..|.|++++.... +| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 57788888 99999999999999875 377899999886543 33 57888888875
No 271
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=86.71 E-value=7 Score=37.72 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=42.0
Q ss_pred EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC--C-CceeEEEEEEccc
Q 005736 520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--G-DENMGSARVNLEG 573 (680)
Q Consensus 520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~--~-d~~iG~~~i~L~~ 573 (680)
..++|.+. ++.+|.|+|++.+.++. ....|.|++++.... + ...+|.+.+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 46788888 99999999999999885 367899988886543 2 2578888888743
No 272
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=85.42 E-value=2.2 Score=43.45 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=54.6
Q ss_pred CcCeEEEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeeccC-CCCCCccceeEE
Q 005736 292 AVGGIVYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDAR-PGSDPRWDSMFN 368 (680)
Q Consensus 292 ~~~G~L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v~-~t~nP~Wne~f~ 368 (680)
...|+|.+++.++++|+-... .|. +.+-||++.++.+ ..+|.++ .+..=.|.|+|.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kgl---------------------t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~ 106 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGL---------------------TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFK 106 (442)
T ss_pred cccceEEEEEecccccccChhccCc---------------------eeeeeeeeeecccCccccccccCCCCccchhhce
Confidence 345999999999999986542 122 2488999999976 4566663 455567999998
Q ss_pred EEEecCCCeEEEEEEEeCCC
Q 005736 369 MVLHEETGTVRFNLYECIPG 388 (680)
Q Consensus 369 ~~v~~~~~~l~l~v~d~d~~ 388 (680)
..+... ..+.+-||.|+..
T Consensus 107 ~Dvv~~-~vl~~lvySW~pq 125 (442)
T KOG1452|consen 107 HDVVNI-EVLHYLVYSWPPQ 125 (442)
T ss_pred eecccc-eeeeEEEeecCch
Confidence 876653 3567778888765
No 273
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.61 E-value=5.2 Score=34.33 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=46.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEecC
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEEI 558 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~ 558 (680)
+.+.+....+..........+-||++.+ |++ ...|+.+ -...+.|||...|++. + ....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5566777766654432223477888876 554 3356666 5667999999999865 2 37899999999653
No 274
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=83.16 E-value=4.7 Score=38.39 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=58.0
Q ss_pred CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeecc---CC--CCCCc
Q 005736 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDA---RP--GSDPR 362 (680)
Q Consensus 294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v---~~--t~nP~ 362 (680)
...+.|+|..+.+++...... ..|-|+.+.+ |++ ...|+. .+ ...+.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~----------------------~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~ 64 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQS----------------------FEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVV 64 (171)
T ss_pred cccEEEEEEEeecCChHHhhc----------------------cccEEEEEEEEECCEECcCceeccccccccCcccccc
Confidence 367889999999888764211 1267777755 433 234442 11 23577
Q ss_pred cceeEEEEEe--cC--CCeEEEEEEEeCCCCC--------CCceeEEEEEeccc
Q 005736 363 WDSMFNMVLH--EE--TGTVRFNLYECIPGHV--------KYDYLTSCEVKMKY 404 (680)
Q Consensus 363 Wne~f~~~v~--~~--~~~l~l~v~d~d~~~~--------~d~~lG~~~i~l~~ 404 (680)
|||...|.+. +. +..|.|.+|+...... ++..||.+.++|=+
T Consensus 65 Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 65 WDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred ccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9999988864 33 4579999999765311 45788998888755
No 275
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.00 E-value=9.5 Score=36.81 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=38.6
Q ss_pred eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCCC-CceeEEEEEecc
Q 005736 350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVK-YDYLTSCEVKMK 403 (680)
Q Consensus 350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~-d~~lG~~~i~l~ 403 (680)
.++|.+ ..+.+|.|+|++.+.+... ..+|.|+.++.-....+ ...+|-+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 356777 7889999999999887753 45799988874432112 267888888874
No 276
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.80 E-value=3.6 Score=39.71 Aligned_cols=55 Identities=9% Similarity=0.144 Sum_probs=33.6
Q ss_pred eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCCCC--ceeEEEEEeccc
Q 005736 350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY 404 (680)
Q Consensus 350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d--~~lG~~~i~l~~ 404 (680)
...|.+ ..+.+|.|+|+|.+.+... ...|.|++++......++ ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 345666 6789999999999988753 457999999966542222 799999999877
No 277
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=80.94 E-value=39 Score=30.72 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=55.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEccee---eeecc--CCCCCCccceeEEEE
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT---RRTDA--RPGSDPRWDSMFNMV 370 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~---~~T~v--~~t~nP~Wne~f~~~ 370 (680)
.+.|+|++..+++..+ + .-|+...-++.. .+|.. -.+-.-.|||.|.+.
T Consensus 8 ~~~l~i~~l~~~p~~~--~------------------------~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~ 61 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN--G------------------------KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFP 61 (143)
T ss_pred EEEEEEEEeECcCCCC--C------------------------EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEE
Confidence 5678888888887621 1 235555555442 44443 245557899999887
Q ss_pred Eec----C----CC-eEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736 371 LHE----E----TG-TVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (680)
Q Consensus 371 v~~----~----~~-~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~ 407 (680)
+.- . .. .+.|.|+..... ++...+|.+.++|++...
T Consensus 62 ~tl~~~~k~~~~~~K~~~~~v~~~~~~-~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 62 CTLYRDKKSKEFQPKELKFSVFEVDGS-GKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEEEEcCCCCcEeeEEEEEEEEEecCC-CccceEEEEEEEHHHhhC
Confidence 541 1 12 488999887533 233799999999999865
No 278
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.87 E-value=7.7 Score=37.38 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=34.1
Q ss_pred EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC--C--CceeEEEEEEccc
Q 005736 520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--G--DENMGSARVNLEG 573 (680)
Q Consensus 520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~--~--d~~iG~~~i~L~~ 573 (680)
..+.|.+. ++.+|.|+|+|.+.++. +...|.|++++.... + +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 35677777 89999999999999885 367899999997654 2 2689999999887
No 279
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=78.02 E-value=18 Score=31.46 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=35.9
Q ss_pred EEEEEE-CCEEEeeeccCCCCCeeeeEEEEEeeCC--------ceEEEEEEEEecCCCCceeEEEEEEcccccC
Q 005736 512 YVKLQY-GKIVQRTRTAHSPNHVWNQKFELDEIGG--------GECLMVKCYNEEIFGDENMGSARVNLEGLVE 576 (680)
Q Consensus 512 yv~v~l-~~~~~~T~~~~t~nP~wne~f~f~v~~~--------~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~ 576 (680)
||.+.+ +-+.+.|.++.+.+|.+|-+-.|.+... ...+.++++.........+|.+.+++..+.+
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhc
Confidence 455555 3456667666888999999988887742 5689999988764456789999999999874
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=76.47 E-value=10 Score=34.80 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=37.5
Q ss_pred eeccC-CC-CCCccceeEEEEEe--cC--CCeEEEEEEEeCCCCCCC----ceeEEEEEecccc
Q 005736 352 RTDAR-PG-SDPRWDSMFNMVLH--EE--TGTVRFNLYECIPGHVKY----DYLTSCEVKMKYV 405 (680)
Q Consensus 352 ~T~v~-~t-~nP~Wne~f~~~v~--~~--~~~l~l~v~d~d~~~~~d----~~lG~~~i~l~~l 405 (680)
.|+.. -+ .++.|||...|.+. +. +..|.|.||+.+.. ..+ ..||.+.++|=+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeECC
Confidence 55553 33 69999999999865 33 45799999998765 233 6899999987654
No 281
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=75.16 E-value=7.2 Score=37.74 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=39.3
Q ss_pred eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCCCC---ceeEEEEEecc
Q 005736 350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKMK 403 (680)
Q Consensus 350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d---~~lG~~~i~l~ 403 (680)
..+|.+ ....+|.|+|++.+.+... ..+|.|.+++.-....+| ..+|-+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 566777 7889999999999887653 457999998854321233 56888888874
No 282
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=74.46 E-value=43 Score=32.26 Aligned_cols=55 Identities=7% Similarity=0.055 Sum_probs=38.7
Q ss_pred eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCC--------CCCceeEEEEEeccc
Q 005736 350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH--------VKYDYLTSCEVKMKY 404 (680)
Q Consensus 350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~--------~~d~~lG~~~i~l~~ 404 (680)
...|.+ ..+.+|.|+|++-+.+.-. ..+|.|+.|+..-.. .....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 455666 6779999999998877642 457999999965210 123568888888754
No 283
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=73.34 E-value=57 Score=34.08 Aligned_cols=107 Identities=11% Similarity=0.163 Sum_probs=76.3
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCe--eeeEEEEEeeCCceEEEEEEEEecCCCCce
Q 005736 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHV--WNQKFELDEIGGGECLMVKCYNEEIFGDEN 563 (680)
Q Consensus 487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~--wne~f~f~v~~~~~~L~i~V~d~~~~~d~~ 563 (680)
.-.|-|.|.+..++. .....|+++..|+...+|..+ -+..-. -.+.....+..-..+|++.+|-..-.+..-
T Consensus 57 kF~LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~h 131 (508)
T PTZ00447 57 TFYLLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVH 131 (508)
T ss_pred eeeEEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeE
Confidence 447888888887764 345789999999999999777 322222 234444555555778999999877667889
Q ss_pred eEEEEEEccc-cc-CCCeeeEEEeCCCCC--CeEEEEEE
Q 005736 564 MGSARVNLEG-LV-EGSVRDIWVPLEKVN--TGELRLQI 598 (680)
Q Consensus 564 iG~~~i~L~~-l~-~~~~~~~w~~L~~~~--~G~i~l~l 598 (680)
||.+.+.++. +. ..-+..+||.+...+ .++|.+|+
T Consensus 132 IgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 132 IGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred EEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 9999999876 33 344778999996543 46677666
No 284
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=70.67 E-value=55 Score=27.61 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=44.0
Q ss_pred CeEEEEEEcc-eeeeeccCCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736 339 TTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (680)
Q Consensus 339 dpyv~v~~~~-~~~~T~v~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~ 404 (680)
+..+.+.+++ ...+|.-+.-.+..||+.|.+.++.. ..|.+.||-.|-. .+-|-..+.|.+
T Consensus 10 eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~LdRs-RELEI~VywrD~R----slCav~~lrLEd 71 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLELERS-RELEIAVYWRDWR----SLCAVKFLKLED 71 (98)
T ss_pred ceEEEEEEcCeEEeeccccccccccccceeEEEeecc-cEEEEEEEEecch----hhhhheeeEhhh
Confidence 6678888886 56778777778899999999987653 4578888776542 344555555655
No 285
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=70.29 E-value=12 Score=32.04 Aligned_cols=56 Identities=18% Similarity=0.045 Sum_probs=37.6
Q ss_pred EEEEEEEeecCccccCCCCCCCEEEEEE--CCe----EEeeeeeecCCCCcccceeEEEecC
Q 005736 621 IELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKLTVACLSGHIQNSKSSMASN 676 (680)
Q Consensus 621 L~V~I~~a~~L~~~d~~g~~DPyV~v~l--g~~----~~kT~~~k~tlnP~wnE~f~f~V~n 676 (680)
+.+.+..+++.........+|-||++.+ |++ ...|+.+.-...+.|||-+.|++.=
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i 74 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQI 74 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCch
Confidence 5667777777765444334688999966 553 3355555545668999999998653
No 286
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=61.86 E-value=20 Score=34.25 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=39.1
Q ss_pred eeeeccCCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCC----CCCceeEEEEEeccc
Q 005736 350 TRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH----VKYDYLTSCEVKMKY 404 (680)
Q Consensus 350 ~~~T~v~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~----~~d~~lG~~~i~l~~ 404 (680)
.++|.+....+|.|+|+|.+.+... ..+|.|+++|..... .....+|.+.+||-+
T Consensus 54 ~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4455553339999999998887542 457999999966431 235778988888764
No 287
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=60.88 E-value=18 Score=34.65 Aligned_cols=56 Identities=9% Similarity=-0.047 Sum_probs=36.2
Q ss_pred eEEEEEEEeecCccccCCCCCCCEEEEEE--CCe---EEeeeeeecCCCCcccceeEEEecC
Q 005736 620 WIELVIVEARDLVAADLRGTSDPYVKVQY--GDL---KKRTKLTVACLSGHIQNSKSSMASN 676 (680)
Q Consensus 620 ~L~V~I~~a~~L~~~d~~g~~DPyV~v~l--g~~---~~kT~~~k~tlnP~wnE~f~f~V~n 676 (680)
.++|.|.+++ .+..+......-||++.+ |+. ..+|+.+.-+.+|.|||-+.|+|.=
T Consensus 11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~ 71 (178)
T cd08399 11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKI 71 (178)
T ss_pred CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECcccc
Confidence 5788887776 333333333346677644 553 3366666667789999999998753
No 288
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=60.41 E-value=37 Score=29.54 Aligned_cols=66 Identities=15% Similarity=0.335 Sum_probs=36.0
Q ss_pred EEEEEEcc-eeeeeccCCCCCCccceeEEEEEecC--------CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736 341 FVEIELEE-LTRRTDARPGSDPRWDSMFNMVLHEE--------TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (680)
Q Consensus 341 yv~v~~~~-~~~~T~v~~t~nP~Wne~f~~~v~~~--------~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~ 408 (680)
||.+.+-. ....|.+-.+.+|.+|-+-.+.|... +..+.++++..-. .....+|.+.+++..+.+.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcC
Confidence 45555543 45677776799999999988887641 4579999988652 4679999999999998643
No 289
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=58.98 E-value=21 Score=40.12 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=33.8
Q ss_pred hhhhcccCC-----CCCCcChhhHHHHHHhhcccCchHHHHHHHHHHHHHHHhh
Q 005736 87 NQIILKTSP-----ITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKH 135 (680)
Q Consensus 87 ~~~~~~~~~-----~~~~E~~eWlN~~l~~~W~~~~~~~~~~~i~~~v~~~l~~ 135 (680)
.++++.+.| +.+.-.+||.|-++..+.. +..+.+.+.+.++.+|.+
T Consensus 77 ~~~al~nmPiGii~~~e~~~veW~Npf~~~if~---~~~~~~~~~~~~~~il~~ 127 (655)
T COG3887 77 LEEALTNMPIGIILFNETNKVEWVNPFASKIFN---KNEIGESLSELIPEILKQ 127 (655)
T ss_pred HHHHHHhCCceEEEEcCCCceEEecHHHHHhcC---hhhhhhhHHHHhHHHHHH
Confidence 345565666 4777789999999999998 555666667767666665
No 290
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=57.80 E-value=52 Score=31.16 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=51.0
Q ss_pred CeEEEEEEcce-eeeeccC---CCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736 339 TTFVEIELEEL-TRRTDAR---PGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (680)
Q Consensus 339 dpyv~v~~~~~-~~~T~v~---~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~ 406 (680)
.-|+++.++++ ..+|+.+ .+..-.+||.|.+.+...-+.|.++||.... ..+..|+++.+|+-...
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG--LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence 45889999865 4455542 3344568999999998888899999999765 58999999999987654
No 291
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=56.01 E-value=29 Score=33.21 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=38.4
Q ss_pred eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCC-----CCceeEEEEEecc
Q 005736 350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHV-----KYDYLTSCEVKMK 403 (680)
Q Consensus 350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~-----~d~~lG~~~i~l~ 403 (680)
...|.+ ..+.+|.|+|++.+.+.-. ..+|.|+.++.+-... ....+|-+.+||-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 345666 6889999999998887653 4579999998554311 1356888888864
No 292
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=55.95 E-value=34 Score=32.68 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=39.1
Q ss_pred EEEeeeccCCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC------CCceeEEEEEEccc
Q 005736 520 IVQRTRTAHSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF------GDENMGSARVNLEG 573 (680)
Q Consensus 520 ~~~~T~~~~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~------~d~~iG~~~i~L~~ 573 (680)
..++|-+....+|.|+|+|.+.++. +...|.|++++.... ....+|.+.+||-+
T Consensus 53 s~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3445555534999999999999864 367899999986532 25678888888764
No 293
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=54.25 E-value=41 Score=32.28 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=40.3
Q ss_pred EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-C------CceeEEEEEEccc
Q 005736 520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-G------DENMGSARVNLEG 573 (680)
Q Consensus 520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-~------d~~iG~~~i~L~~ 573 (680)
....|.+. ++.+|.|+|++.+.++. +...|.|+.++-+.. + ...+|...+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45677888 99999999999999875 366899999885432 1 2457777777654
No 294
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=52.72 E-value=14 Score=26.48 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHhhccch
Q 005736 36 FVIPLVLLLWVFERWLFSFS 55 (680)
Q Consensus 36 ~~~~~~~~~~~~g~~~~s~~ 55 (680)
++++++-+++++||+.+-+.
T Consensus 6 iL~g~vGLsa~vgyLDyvL~ 25 (46)
T PF11431_consen 6 ILFGAVGLSALVGYLDYVLL 25 (46)
T ss_dssp HHHHHHHHHHHHSHTTTSTT
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 56777888999999988765
No 295
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=51.89 E-value=5.5 Score=45.80 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=68.9
Q ss_pred cChhhHHHHHHhhcccCchH-HHHHHHHHHHHHHHhh-cCCCccceEEEeEEeeCCCCCeeeeEEEEECCCCCeEEEEEE
Q 005736 100 EHCEWLNKLLMEVWPGYINP-KLSIRFSQIVEKRLKH-RKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLG 177 (680)
Q Consensus 100 E~~eWlN~~l~~~W~~~~~~-~~~~~i~~~v~~~l~~-~~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~~~~~~~ld~~ 177 (680)
|.+-|||.++.++..-.-.+ .....+.+.+..++.. ..|++++.+--.+..-|..||.|++-++.+-......-++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 55889999999988633222 2555677777777777 578999999999999999999999999988777788888999
Q ss_pred EEEecC
Q 005736 178 FDWDAN 183 (680)
Q Consensus 178 ~~~~~~ 183 (680)
+.|.++
T Consensus 414 i~y~~d 419 (795)
T KOG2238|consen 414 IEYRGD 419 (795)
T ss_pred eeeccc
Confidence 999996
No 296
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=48.39 E-value=62 Score=31.20 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=39.5
Q ss_pred EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC----------CCceeEEEEEEccc
Q 005736 520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF----------GDENMGSARVNLEG 573 (680)
Q Consensus 520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~----------~d~~iG~~~i~L~~ 573 (680)
....|.+. ++.+|.|+|++.+.++. +...|.|+.++-... ....+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46678888 89999999999998875 467899999986521 12456766666654
No 297
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=40.49 E-value=31 Score=40.75 Aligned_cols=97 Identities=15% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCcEEEEEECC-EEEeeecc-CC-CCCeeeeEEEEEeeCCceEEEEEEEEecCCC-CceeEEEEEEcccccCCCeeeEE
Q 005736 508 KCDPYVKLQYGK-IVQRTRTA-HS-PNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 583 (680)
Q Consensus 508 ~~dpyv~v~l~~-~~~~T~~~-~t-~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~-d~~iG~~~i~L~~l~~~~~~~~w 583 (680)
..++|+.+.+.+ ...+|... +. .+|.|.+.|+..+......+.+.+-+.+... ...+|.+.++...+..+.....|
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~ 216 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGW 216 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccce
Confidence 368999999955 56677777 55 8999999998888877888999988877664 78999999999999888888899
Q ss_pred EeCCCCC-----Ce-EEEEEEEEEEec
Q 005736 584 VPLEKVN-----TG-ELRLQIEATRVD 604 (680)
Q Consensus 584 ~~L~~~~-----~G-~i~l~l~~~~~~ 604 (680)
+++...+ .| .+.+++.|.+..
T Consensus 217 ~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 217 FPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred eeeeccCCccccCCcccceEEeeEeec
Confidence 8875421 22 344556665443
No 298
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=39.92 E-value=2.1e+02 Score=32.47 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=60.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeeccCCCCCCccceeEEEEEecCC
Q 005736 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEET 375 (680)
Q Consensus 296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v~~t~nP~Wne~f~~~v~~~~ 375 (680)
.+.|.|.+..+|+....+. -.||++.+.+.+.+|......-|.|...=.|....+-
T Consensus 342 smevvvmevqglksvapnr------------------------ivyctmevegeklqtdqaeaskp~wgtqgdfstthpl 397 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNR------------------------IVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPL 397 (1218)
T ss_pred eeeEEEeeeccccccCCCe------------------------eEEEEEEecccccccchhhhcCCCCCcCCCcccCCCC
Confidence 4567777888887654222 4699999999888888777888999988888777776
Q ss_pred CeEEEEEEEeCCCC--CCCceeEEEEEe
Q 005736 376 GTVRFNLYECIPGH--VKYDYLTSCEVK 401 (680)
Q Consensus 376 ~~l~l~v~d~d~~~--~~d~~lG~~~i~ 401 (680)
..+.+.+|-..... ..|..+|++.+.
T Consensus 398 pvvkvklftestgvlaledkelgrvil~ 425 (1218)
T KOG3543|consen 398 PVVKVKLFTESTGVLALEDKELGRVILQ 425 (1218)
T ss_pred ceeEEEEEeecceeEEeechhhCeEEEe
Confidence 77888888755431 268888888764
No 299
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=34.49 E-value=33 Score=29.94 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=23.8
Q ss_pred ccchhHHHHHHHHHHHhhccchhhHHHHHHHh
Q 005736 34 LPFVIPLVLLLWVFERWLFSFSNWVPLAIAVW 65 (680)
Q Consensus 34 ~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~ 65 (680)
+.+.+.+..++|++||..+..+.|+++.+.+.
T Consensus 75 A~LAVI~vG~swmfGrldl~~a~~Vv~GI~iV 106 (120)
T PRK13857 75 AVLGIVAIGISWMFGRASLGLVAGVVGGIVIM 106 (120)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhe
Confidence 34556667799999999999887876665543
No 300
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=32.74 E-value=6.9e+02 Score=27.30 Aligned_cols=91 Identities=21% Similarity=0.354 Sum_probs=54.3
Q ss_pred CCcEEEEEECCEEEeeecc---CCCCCe------eeeEEEEEeeC------C------ceEEEEEEEEecCC-------C
Q 005736 509 CDPYVKLQYGKIVQRTRTA---HSPNHV------WNQKFELDEIG------G------GECLMVKCYNEEIF-------G 560 (680)
Q Consensus 509 ~dpyv~v~l~~~~~~T~~~---~t~nP~------wne~f~f~v~~------~------~~~L~i~V~d~~~~-------~ 560 (680)
...||+|++.+-..+|..+ ...++. --..|++.-.+ + ...|+|.||.-... .
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 4569999998765566554 222222 12345554211 1 25799999985542 4
Q ss_pred CceeEEEEEEccccc-CCC---eeeEEEeCCCCC-------CeEEEEEEE
Q 005736 561 DENMGSARVNLEGLV-EGS---VRDIWVPLEKVN-------TGELRLQIE 599 (680)
Q Consensus 561 d~~iG~~~i~L~~l~-~~~---~~~~w~~L~~~~-------~G~i~l~l~ 599 (680)
..+||.+.++|.--. .+. .+.-|..+-+.. ..++++.+.
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr 165 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVR 165 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEe
Confidence 579999999987321 121 456788886543 356666654
No 301
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=30.62 E-value=42 Score=39.47 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=53.3
Q ss_pred ccccccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCC
Q 005736 286 VDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGS 359 (680)
Q Consensus 286 ~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~ 359 (680)
.|...+..-|-+.+.+++|..|+... .-||...+.. ...+|.+ .+|.
T Consensus 750 dD~eSpl~ygflh~~vhsat~lkqs~---------------------------~lY~Td~v~e~~~~~s~~st~~iadT~ 802 (1112)
T KOG4269|consen 750 DDDESPLLYGFLHVIVHSATGLKQSR---------------------------NLYCTDEVDEFGYFVSKASTRVIADTA 802 (1112)
T ss_pred ccccCcccccceeeeecccccccccc---------------------------ceeeehhhhhhccccccccceeeeccc
Confidence 45555555699999999999887542 4588887753 3567776 7999
Q ss_pred CCccceeEEEEEecCCCeEEEEEEEeCC
Q 005736 360 DPRWDSMFNMVLHEETGTVRFNLYECIP 387 (680)
Q Consensus 360 nP~Wne~f~~~v~~~~~~l~l~v~d~d~ 387 (680)
.|.||+.|+..+... |.+++..++++.
T Consensus 803 ~~~~npe~hv~~~~s-qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 803 EPQWNPEKHVPVIES-QSSRLEKTEKST 829 (1112)
T ss_pred CCCCChhcccchhhc-cccchhhhcccc
Confidence 999999998876653 445566666543
No 302
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.09 E-value=13 Score=42.39 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=58.6
Q ss_pred CCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeEEEEEEccccc-CCCeeeE
Q 005736 507 GKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGSARVNLEGLV-EGSVRDI 582 (680)
Q Consensus 507 ~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~-~~~~~~~ 582 (680)
...+||+.|.+.. +...+.+. .+..|.|+++|...+. ....+.|.|+..... .+.+...+++-.+++. .......
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 3468898888854 44455567 9999999999999966 455577788876533 2333333333333322 1224457
Q ss_pred EEeCCCCCCeEEEEEEEEE
Q 005736 583 WVPLEKVNTGELRLQIEAT 601 (680)
Q Consensus 583 w~~L~~~~~G~i~l~l~~~ 601 (680)
|..++. .|.+...+.+.
T Consensus 105 w~~~~~--~g~~~~~~~~~ 121 (694)
T KOG0694|consen 105 WVLIEE--LGTLLKPAALT 121 (694)
T ss_pred cccccc--ccceeeeeccc
Confidence 887765 58888877665
No 303
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=29.60 E-value=1.8e+02 Score=33.00 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=68.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeeccCCCCCeeeeEEEEEeeCCceEEEEEEEEecCC----CCcee
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----GDENM 564 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~----~d~~i 564 (680)
.+.|.|.+..+|+... ...=.||...+.+++.+|.-.....|.|...=.|.-..+-..+++.+|..... .|.-+
T Consensus 342 smevvvmevqglksva--pnrivyctmevegeklqtdqaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA--PNRIVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccC--CCeeEEEEEEecccccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 4677888888886543 22346999999888888887755679999888888777777888888887653 67889
Q ss_pred EEEEEEcccccCCCeeeEEEeCC
Q 005736 565 GSARVNLEGLVEGSVRDIWVPLE 587 (680)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~ 587 (680)
|.+.+--. ........|+.+.
T Consensus 420 grvil~pt--pns~ks~ewh~mt 440 (1218)
T KOG3543|consen 420 GRVILQPT--PNSAKSPEWHTMT 440 (1218)
T ss_pred CeEEEecC--CCCcCCccceeee
Confidence 98876433 2334455777664
No 304
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=29.16 E-value=4.1e+02 Score=23.62 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=50.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE-eeecc-CCCCCee-eeEEEEEeeC--C-ceEEEEEEEEecCC--C
Q 005736 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQ-RTRTA-HSPNHVW-NQKFELDEIG--G-GECLMVKCYNEEIF--G 560 (680)
Q Consensus 489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~T~~~-~t~nP~w-ne~f~f~v~~--~-~~~L~i~V~d~~~~--~ 560 (680)
.|.++=+.-.+.+.-+..+.+.||++|+-++... .|... ... ... ...+.+.+.. . ...+.|.+|+.+.. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDP-KSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCC-CEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceecc-ccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 4555556666777666667899999999977655 33333 221 121 1223333332 2 45688899988742 5
Q ss_pred CceeEEEEEEccccc
Q 005736 561 DENMGSARVNLEGLV 575 (680)
Q Consensus 561 d~~iG~~~i~L~~l~ 575 (680)
++.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 667777777655443
No 305
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=28.85 E-value=46 Score=34.63 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=30.1
Q ss_pred ccCCceEEeeehHHH--HHHHHHhhhcCCCccchhHHHHHHHHHHHhhccc
Q 005736 6 RKKGARSFALNVEQV--VEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSF 54 (680)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~ 54 (680)
++.++|.+-..-+|- +|.|+-+|. +.-+++|++-+..|--|+=
T Consensus 243 ~a~~nqg~p~~~ee~~n~DwLd~~ys------f~r~aillSilyfySSf~R 287 (391)
T KOG4583|consen 243 RAMNNQGGPAPREEDENRDWLDWGYS------FFRVAILLSILYFYSSFSR 287 (391)
T ss_pred ccccccCCCCCCcccchhhHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 455666666555543 888888888 7777788888777766654
No 306
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=28.14 E-value=16 Score=40.98 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=29.9
Q ss_pred CCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736 338 LTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE 373 (680)
Q Consensus 338 ~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~ 373 (680)
.+|++...++++.++|+. +.+.+|+|||. .+.+.+
T Consensus 305 ~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 305 DKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred CCchheeecchhhhhhhhhccccccccccc-cccccc
Confidence 489999999999999999 78999999997 555444
No 307
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=28.03 E-value=74 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.346 Sum_probs=14.4
Q ss_pred HHHHHHhhccchhhHHHH--HHHhhhhe
Q 005736 44 LWVFERWLFSFSNWVPLA--IAVWATVQ 69 (680)
Q Consensus 44 ~~~~g~~~~s~~~~~~~~--~~~~~~~~ 69 (680)
.++.-.|||.+++|++.. =++|++..
T Consensus 31 iflailfgftiagwlvvfcirlv~sail 58 (73)
T PF07069_consen 31 IFLAILFGFTIAGWLVVFCIRLVCSAIL 58 (73)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334445777777776443 34555433
No 308
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=27.42 E-value=36 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.0
Q ss_pred CccccccCCceEEeeehHHHHHHHH
Q 005736 1 MARSRRKKGARSFALNVEQVVEFWK 25 (680)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (680)
|+-..-|.+..-|+||++|+++.+.
T Consensus 9 m~~~~Qq~~pe~l~LtpEDAvEaLi 33 (35)
T PF08383_consen 9 MANYQQQMNPEALGLTPEDAVEALI 33 (35)
T ss_pred cccchhhcChhhcCCCHHHHHHHHh
Confidence 4455667888999999999998763
No 309
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=27.03 E-value=5.3e+02 Score=24.21 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=52.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----------CCE-EEeeecc-C-----CCCCeeeeEEEEEeeC--C--ceE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY----------GKI-VQRTRTA-H-----SPNHVWNQKFELDEIG--G--GEC 548 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l----------~~~-~~~T~~~-~-----t~nP~wne~f~f~v~~--~--~~~ 548 (680)
+.=.|..|.+.. ..+-||+-.+ +.. ...|.+. . ...-.||.-|++.... + -..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 444677787664 2356888776 123 5666655 2 2345788888877653 2 358
Q ss_pred EEEEEEEecCC-CCceeEEEEEEccc
Q 005736 549 LMVKCYNEEIF-GDENMGSARVNLEG 573 (680)
Q Consensus 549 L~i~V~d~~~~-~d~~iG~~~i~L~~ 573 (680)
|.++||..|.. ++.+.|...+.|-.
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeCC
Confidence 99999999988 88888887776643
No 310
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=25.70 E-value=2.5e+02 Score=33.46 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----CC----EEEeeecc-CCCCCeeeeEEEEEee----CCceEEEEEEEEe
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY----GK----IVQRTRTA-HSPNHVWNQKFELDEI----GGGECLMVKCYNE 556 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l----~~----~~~~T~~~-~t~nP~wne~f~f~v~----~~~~~L~i~V~d~ 556 (680)
++|+++++.++ +.....|-+|.|.. |. +...|..+ ...+|.||+..+|.+. ++...|.|.||.-
T Consensus 345 frI~l~~is~~---n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 345 FRIKLVGISKV---NLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred eEEEEeecccc---CCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Q ss_pred --------------cCC---CCceeEEEEEEccc----ccCCCeeeEEEeCCCCCCeEE
Q 005736 557 --------------EIF---GDENMGSARVNLEG----LVEGSVRDIWVPLEKVNTGEL 594 (680)
Q Consensus 557 --------------~~~---~d~~iG~~~i~L~~----l~~~~~~~~w~~L~~~~~G~i 594 (680)
... .+..+|.+++.|-| +..++..-.-.+..+...|++
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~p~~~~e~ 480 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSVPDELGEL 480 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCCCchhhhh
No 311
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=22.93 E-value=31 Score=38.90 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=43.2
Q ss_pred ceEEEEEEEeecCccc----cCCCCCCCEEEEEECCeEEeeeeeecCCCCcccceeEEEecC
Q 005736 619 GWIELVIVEARDLVAA----DLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNSKSSMASN 676 (680)
Q Consensus 619 ~~L~V~I~~a~~L~~~----d~~g~~DPyV~v~lg~~~~kT~~~k~tlnP~wnE~f~f~V~n 676 (680)
|.....++.|.++++. ...-+.+|++...++.+..+|+.-..+.+|+|||- .|.+++
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-cccccc
Confidence 5555666777777542 12235689999999999999999999999999996 555543
No 312
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=22.60 E-value=79 Score=22.81 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=3.3
Q ss_pred hhhHHHHh
Q 005736 76 RIHVEELN 83 (680)
Q Consensus 76 ~~~~~~~~ 83 (680)
++++.+++
T Consensus 30 r~~~~~l~ 37 (46)
T PF04995_consen 30 RRLRKELK 37 (46)
T ss_pred HHHHHHHH
Confidence 33444443
No 313
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=22.47 E-value=92 Score=28.24 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=6.5
Q ss_pred ChhhHHHHHHhhcc
Q 005736 101 HCEWLNKLLMEVWP 114 (680)
Q Consensus 101 ~~eWlN~~l~~~W~ 114 (680)
....+|-.=++=|.
T Consensus 67 diQfinpyqDqqw~ 80 (189)
T PF05568_consen 67 DIQFINPYQDQQWA 80 (189)
T ss_pred cccccCcccchhhc
Confidence 34444444444465
No 314
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.34 E-value=72 Score=36.70 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.4
Q ss_pred CCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeC
Q 005736 338 LTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECI 386 (680)
Q Consensus 338 ~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d 386 (680)
.|||+.+.+.. +...+.+ ..+..|.|+|+|...+... ..+.+.|++..
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~ 77 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKS 77 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecC
Confidence 58999998874 3445555 6899999999999986653 45666777643
No 315
>PF14980 TIP39: TIP39 peptide
Probab=21.77 E-value=46 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=19.5
Q ss_pred HHHHhhhhhhhhcccCCCCCCcChhhHHHHHHhhc
Q 005736 79 VEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVW 113 (680)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~E~~eWlN~~l~~~W 113 (680)
.+|.+-.++..++.. -|+-.|||.-++++-
T Consensus 18 ADDaAFrerarLl~a-----mER~~WLnSYMqkLL 47 (51)
T PF14980_consen 18 ADDAAFRERARLLTA-----MERQKWLNSYMQKLL 47 (51)
T ss_pred cchHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 445444444445543 399999999998864
No 316
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=21.74 E-value=5.9e+02 Score=23.33 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=56.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEee-----C--------CceEEEEEEEE
Q 005736 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEI-----G--------GGECLMVKCYN 555 (680)
Q Consensus 490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~-----~--------~~~~L~i~V~d 555 (680)
|.++-+.|=|..-. ..-|-|..|++-++..+|+.. ..--=.++|.|.|.-. + ..+.+.++++.
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 44554555443221 245889999999999999988 6555568999998722 1 14577888887
Q ss_pred ecCCCCceeEEEEEEccccc
Q 005736 556 EEIFGDENMGSARVNLEGLV 575 (680)
Q Consensus 556 ~~~~~d~~iG~~~i~L~~l~ 575 (680)
........|+...-+++|+.
T Consensus 81 l~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EeCCCCcEEEEEeccccceE
Confidence 65544667777777777755
No 317
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.31 E-value=1.5e+02 Score=27.28 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHhhccchhhHHHHHHHh
Q 005736 37 VIPLVLLLWVFERWLFSFSNWVPLAIAVW 65 (680)
Q Consensus 37 ~~~~~~~~~~~g~~~~s~~~~~~~~~~~~ 65 (680)
+++.++.+|+..+++++=. |..+.+++.
T Consensus 86 L~~l~v~~~La~~L~~~e~-~~~~~~~lg 113 (150)
T COG3086 86 LVGLFLGAILAQYLFFSEL-IVIFGAFLG 113 (150)
T ss_pred HHHHHHHHHHHHHHhhhhH-HHHHHHHHH
Confidence 4444556667788888765 655544443
No 318
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=21.24 E-value=2.7e+02 Score=25.02 Aligned_cols=11 Identities=18% Similarity=0.893 Sum_probs=5.0
Q ss_pred HHHHHHHHhhc
Q 005736 42 LLLWVFERWLF 52 (680)
Q Consensus 42 ~~~~~~g~~~~ 52 (680)
.++|++..|++
T Consensus 5 wFm~fI~~W~~ 15 (141)
T PF11084_consen 5 WFMWFILFWVV 15 (141)
T ss_pred HHHHHHHHHHH
Confidence 34555544433
Done!