Query 005737
Match_columns 680
No_of_seqs 405 out of 1795
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 3.5E-21 1.2E-25 158.5 6.5 61 329-397 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 1.9E-19 6.5E-24 148.2 5.5 60 431-491 2-62 (63)
3 1u3e_M HNH homing endonuclease 93.2 0.0079 2.7E-07 57.1 -2.1 88 377-473 55-146 (174)
4 3igm_B PF14_0633 protein; AP2 83.9 0.76 2.6E-05 39.5 3.4 25 325-349 3-27 (77)
5 3igm_B PF14_0633 protein; AP2 82.0 0.51 1.7E-05 40.5 1.7 47 427-476 3-58 (77)
6 1u3e_M HNH homing endonuclease 53.0 0.95 3.2E-05 42.8 -3.3 38 330-379 109-146 (174)
7 3eik_A Tata-box-binding protei 50.9 31 0.0011 34.6 7.1 127 328-479 75-212 (218)
8 1ais_A TBP, protein (tata-bind 30.7 1.1E+02 0.0036 29.7 7.1 128 327-480 40-179 (182)
9 2z8u_A Tata-box-binding protei 28.3 1.9E+02 0.0065 28.1 8.4 131 328-479 45-182 (188)
10 1mp9_A Tata-binding protein; t 26.3 1.6E+02 0.0053 28.9 7.4 135 328-480 45-183 (198)
11 1z1b_A Integrase; protein-DNA 22.6 94 0.0032 30.6 5.2 42 331-385 14-55 (356)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.83 E-value=3.5e-21 Score=158.50 Aligned_cols=61 Identities=41% Similarity=0.850 Sum_probs=56.4
Q ss_pred ccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhccCCCcccCCCcc
Q 005737 329 QYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLE 397 (680)
Q Consensus 329 ~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~G~~A~lNFPls 397 (680)
+||||++++| |||+|+|+++. ++|++||||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~-gkw~A~I~~~~-------~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETT-TEEEEEEEETT-------TTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCC-CcEEEEEcccc-------CCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999999987 99999999962 3589999999999999999999999999999999999964
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.77 E-value=1.9e-19 Score=148.19 Aligned_cols=60 Identities=43% Similarity=0.696 Sum_probs=54.9
Q ss_pred cccCceeeecCcceEEEEeecc-CCcccccCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 005737 431 IYRGVTRHHQHGRWQARIGRVA-GNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDIT 491 (680)
Q Consensus 431 kYRGV~r~~~~GKW~ArIr~~~-~gKriyLGtFdTeEEAArAYD~AAikl~G~~A~tNFp~s 491 (680)
+||||+++ ++|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..|++|||.+
T Consensus 2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 69999964 6999999998665 468999999999999999999999999999999999974
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=93.18 E-value=0.0079 Score=57.12 Aligned_cols=88 Identities=8% Similarity=0.046 Sum_probs=58.9
Q ss_pred HHHHHHHhccCCCc---ccCCCc-chhhhhHHHHhhhhhhhHHhhhcccccCccCCcccccCceeeecCcceEEEEeecc
Q 005737 377 AYDLAALKYWGPST---HINFPL-ENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVA 452 (680)
Q Consensus 377 AYD~AAlkl~G~~A---~lNFPl-s~YeeELeELr~mTreE~VaaLRRkssg~sr~tSkYRGV~r~~~~GKW~ArIr~~~ 452 (680)
++.+.+..+.|... ..++-- ....+.+++|+.+|..|...+..+... . ..++||.+ .+.++|.+.|. .
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~-~~~~k~~~vi~--~ 126 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQI-AKIKNQKPIIV--I 126 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHH-HHHHTCCCEEE--E
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeee-ccCCCCceEEE--E
Confidence 45555666666431 122211 123456889999999999887654321 1 12468876 56778999995 4
Q ss_pred CCcccccCCCCCHHHHHHHHH
Q 005737 453 GNKDLYLGTFSTQEEAAEAYD 473 (680)
Q Consensus 453 ~gKriyLGtFdTeEEAArAYD 473 (680)
. +.++||.|+|.+|||++|.
T Consensus 127 ~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 127 S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp C-TTSCEEEESCHHHHHHHHT
T ss_pred c-CCceEEeeCCHHHHHHHHC
Confidence 4 6788999999999999964
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=83.86 E-value=0.76 Score=39.46 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCccccccceeecCCCeeEEEEecC
Q 005737 325 QRTSQYRGVTRHRWTGRYEAHLWDN 349 (680)
Q Consensus 325 ~rtS~YRGVrrrk~tGRW~AeI~~~ 349 (680)
...|+|.||+|.++.+.|.|.-.++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 4679999999999999999997664
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=82.05 E-value=0.51 Score=40.52 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCcccccCceeeecCcceEEEEeeccCCccc-------ccCCC--CCHHHHHHHHHHHH
Q 005737 427 RGASIYRGVTRHHQHGRWQARIGRVAGNKDL-------YLGTF--STQEEAAEAYDIAA 476 (680)
Q Consensus 427 r~tSkYRGV~r~~~~GKW~ArIr~~~~gKri-------yLGtF--dTeEEAArAYD~AA 476 (680)
...|+|+||+|.+..+.|.|... .++++. .+| | +.+.+||..|-+.+
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~l 58 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFY--DGASRRSRTFHPKHFN-MDKEKARLAAVEFMKTV 58 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEE--ETTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEEeecCCceEEEEEe--cCCeEeeeeechhhcC-cCHHHHHHHHHHHHHHH
Confidence 34689999999999999999985 444432 234 4 34555555555444
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=53.02 E-value=0.95 Score=42.79 Aligned_cols=38 Identities=5% Similarity=-0.131 Sum_probs=27.4
Q ss_pred cccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHH
Q 005737 330 YRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYD 379 (680)
Q Consensus 330 YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD 379 (680)
++||.+ +..++|.+.|.. . +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~----------~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVI----------S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEE----------C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEE----------c-CCceEEeeCCHHHHHHHHC
Confidence 467766 334678887754 2 3456899999999999864
No 7
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=50.92 E-value=31 Score=34.59 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=80.1
Q ss_pred cccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhccCCCcccCCC---cc-------
Q 005737 328 SQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFP---LE------- 397 (680)
Q Consensus 328 S~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~G~~A~lNFP---ls------- 397 (680)
.+|-||..|-..-|-.+-||. .||-+.-|. .++|+|.+|.++.+..+....-...|+ +.
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~----------SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~d 143 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFA----------SGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCD 143 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECT----------TSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEE
T ss_pred ccCceEEEEecCCcEEEEEEC----------CCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEE
Confidence 468899888777788899977 477777665 678899999998887764221112221 10
Q ss_pred -hhhhhHHHHhhhhhhhHHhhhcccccCccCCcccccCceeeecCcceEEEEeeccCCcccccCCCCCHHHHHHHHHHHH
Q 005737 398 -NYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAA 476 (680)
Q Consensus 398 -~YeeELeELr~mTreE~VaaLRRkssg~sr~tSkYRGV~r~~~~GKW~ArIr~~~~gKriyLGtFdTeEEAArAYD~AA 476 (680)
.+.-.|+.+. ...+... .=.-..|.||.++-..-|=...| ...||-+..|. .++||+.+|++.-.
T Consensus 144 l~f~I~Le~la--------~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~ 209 (218)
T 3eik_A 144 IKFSIRLEGLA--------YAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIY 209 (218)
T ss_dssp CSSCBCHHHHH--------HHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHH
T ss_pred CCCcCcHHHHH--------HhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHH
Confidence 0001111111 1111110 01123588998766667778888 47888888887 88999999999876
Q ss_pred HHh
Q 005737 477 IKF 479 (680)
Q Consensus 477 ikl 479 (680)
-.|
T Consensus 210 p~L 212 (218)
T 3eik_A 210 PVL 212 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=30.72 E-value=1.1e+02 Score=29.67 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=79.0
Q ss_pred ccccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhcc--CCC--cccCCCcc-----
Q 005737 327 TSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYW--GPS--THINFPLE----- 397 (680)
Q Consensus 327 tS~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~--G~~--A~lNFPls----- 397 (680)
..+|-||..|-..-+-.+-||.+ ||-+- =...++|+|.+|.++.+..+. |-. ...+|-+.
T Consensus 40 P~~fpgli~Rl~~P~~t~lIF~S----------GKiv~-TGakS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas 108 (182)
T 1ais_A 40 PEEFPGIICHLDDPKVALLIFSS----------GKLVV-TGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFS 108 (182)
T ss_dssp TTTCSSEEEECSSSCCEEEECTT----------SEEEE-EEESSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEE
T ss_pred CCccccEEEEcCCCcEEEEEeCC----------CeEEE-ecCCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEE
Confidence 34689998887767888888773 65544 445788889999888776653 211 11122111
Q ss_pred ---hhhhhHHHHhhhhhhhHHhhhcccccCccCCcccccCceeeecCcceEEEEeeccCCcccccCCCCCHHHHHHHHHH
Q 005737 398 ---NYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDI 474 (680)
Q Consensus 398 ---~YeeELeELr~mTreE~VaaLRRkssg~sr~tSkYRGV~r~~~~GKW~ArIr~~~~gKriyLGtFdTeEEAArAYD~ 474 (680)
...-.|+.+. ..++.-. =.-..|.||.++-..-|=.+-|. ..||-+..|. .++||+.+|+++
T Consensus 109 ~~l~~~i~L~~la--------~~~~~~~----YePe~fpgli~R~~~pk~~~lIF--~SGKiviTGa-ks~~~~~~a~~~ 173 (182)
T 1ais_A 109 GDIGREFNLDVVA--------LTLPNCE----YEPEQFPGVIYRVKEPKSVILLF--SSGKIVCSGA-KSEADAWEAVRK 173 (182)
T ss_dssp EECSSCCCHHHHH--------HHSTTEE----CCTTTCSSEEEEETTTTEEEEEC--TTSEEEEEEE-SSHHHHHHHHHH
T ss_pred EEcCCccCHHHHH--------hhCCCCE----ECCccCceEEEEeCCCcEEEEEe--cCCEEEEEec-CCHHHHHHHHHH
Confidence 0001122211 1112111 12246889987666667788884 7788888887 789999999998
Q ss_pred HHHHhc
Q 005737 475 AAIKFR 480 (680)
Q Consensus 475 AAikl~ 480 (680)
-...|.
T Consensus 174 i~~~L~ 179 (182)
T 1ais_A 174 LLRELD 179 (182)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776653
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=28.25 E-value=1.9e+02 Score=28.09 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=73.9
Q ss_pred cccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhcc--CCC--cccCCCcchhhhhH
Q 005737 328 SQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYW--GPS--THINFPLENYQKEL 403 (680)
Q Consensus 328 S~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~--G~~--A~lNFPls~YeeEL 403 (680)
.+|-||..|-..-|=.+-||. .||-+--|. .++|+|..|-.+.+..+. |-. ...+|-+. +.+
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~----------SGKiv~TGA-kS~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~---NIV 110 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFR----------SGKVNCTGA-KSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQ---NMV 110 (188)
T ss_dssp ----CEEEEETTTTEEEEECT----------TSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEE---EEE
T ss_pred CCcccEEEEcCCCcEEEEEeC----------CCeEEEecC-CCHHHHHHHHHHHHHHHHhcCCCccccCceEEE---EEE
Confidence 468899888777788888877 477766665 456778888777665553 211 11222211 000
Q ss_pred HH--H-hhhhhhhHHhhhcccccCccCCcccccCceeeecCcceEEEEeeccCCcccccCCCCCHHHHHHHHHHHHHHh
Q 005737 404 EE--M-KNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 479 (680)
Q Consensus 404 eE--L-r~mTreE~VaaLRRkssg~sr~tSkYRGV~r~~~~GKW~ArIr~~~~gKriyLGtFdTeEEAArAYD~AAikl 479 (680)
.. + ..+.-++....++.-. =.-..|.||.++-..-|=.+-| ...||-+..|. .++||+.+|+++....|
T Consensus 111 as~~l~~~i~L~~la~~~~~~e----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 111 ATADLGIEPNLDDIALMVEGTE----YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp EEEECSSCCCHHHHHHHSTTEE----ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCHHHHHhhCcCcE----ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 00 0 0000111111112111 1124688998666666777777 47888888887 88999999998876555
No 10
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=26.33 E-value=1.6e+02 Score=28.95 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=79.0
Q ss_pred cccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhccCCCcc-cCCCcchhhhhHHH-
Q 005737 328 SQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTH-INFPLENYQKELEE- 405 (680)
Q Consensus 328 S~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~G~~A~-lNFPls~YeeELeE- 405 (680)
.+|-||..|-..-|-.+-||. .||-+--|. .++|+|.+|.++.+..+....-. ..|+.-.-++.+..
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~----------SGKiv~TGa-kS~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~ 113 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFK----------SGKMVVTGA-KSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASA 113 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECT----------TSEEEEECC-SSHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEE
T ss_pred ccccceEEEcCCCceEEEEeC----------CCeEEEecc-CCHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEe
Confidence 468999888877788888877 477777676 45667888888876655321100 11110000010000
Q ss_pred -H-hhhhhhhHHhhhcccccCccCCcccccCceeeecCcceEEEEeeccCCcccccCCCCCHHHHHHHHHHHHHHhc
Q 005737 406 -M-KNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFR 480 (680)
Q Consensus 406 -L-r~mTreE~VaaLRRkssg~sr~tSkYRGV~r~~~~GKW~ArIr~~~~gKriyLGtFdTeEEAArAYD~AAikl~ 480 (680)
+ ..+.-++....++.-. =.-..|.||.++-..-|=.+-| ...||-+..|. .++||+.+|.++-...|.
T Consensus 114 ~l~~~i~L~~la~~~~~~~----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 114 NLHVIVNLDKAAFLLENNM----YEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp ECSSEECHHHHHHHSSSEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred eCCCccCHHHHHhhcCCcE----ECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 0 0001111111122111 1234689998766666778888 47888888887 789999999998776663
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=22.60 E-value=94 Score=30.57 Aligned_cols=42 Identities=19% Similarity=0.085 Sum_probs=27.5
Q ss_pred ccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhc
Q 005737 331 RGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKY 385 (680)
Q Consensus 331 RGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl 385 (680)
.||++++. |+|..... ..|+++.+|. |..+|-.+...+...+
T Consensus 14 ~~v~~~~~-g~~~~r~~----------~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNN-GYYCYRDP----------RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETT-TEEEEECT----------TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCC-CeEEEEee----------cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 35766654 89987652 2578889996 7777766655544443
Done!