BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005738
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/450 (47%), Positives = 308/450 (68%), Gaps = 10/450 (2%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
+V FKDV G +EA +E+ E V FLK+P K+ +GA++PKG LLVGPPGTGKTLLA+A AG
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF +SGSDF+E+FVGVG +RVR LF +A+ AP IVFIDEIDA+
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV-GRHRGAGLGG 130
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
+DERE TLNQLLVEMDGF + G++V+A TNRPDILD ALLRPGRFD++I +D PD+ G
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427
R +I +I+ + L + + + +A TPGF GAD+ N+ NEAAL+AAR +ITM+
Sbjct: 191 RKKILEIHTRNKPLAEDVNL--EIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248
Query: 428 FEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 487
FE AIDRVI G +K+ +IS E+R +AYHE+GHAV + + EP+ +++I+PRG AL
Sbjct: 249 FEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKAL 308
Query: 488 GFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVA 546
G+ ++P E+ L+++ +L D LGGRAAE+V+ G +++GA ND+E+ T++ V
Sbjct: 309 GYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVC 368
Query: 547 VYGFSDKVGLLSFPQRDDTF----EMT--KPYSSKTGAIIDNEVREWVGKAYDHTVKLIE 600
G S+++G L++ + + E+T + YS + + ID EV++ V Y+ ++I
Sbjct: 369 QLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIR 428
Query: 601 EHREHVAQIAEELLEKEVLHQDDLVRVLGE 630
++R+ + I E LLEKE + D+L R+L E
Sbjct: 429 KYRKQLDNIVEILLEKETIEGDELRRILSE 458
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/450 (47%), Positives = 307/450 (68%), Gaps = 10/450 (2%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
+V FKDV G +EA +E+ E V FLK+P K+ +GA++PKG LLVGPPGTG TLLA+A AG
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF +SGSDF+E+FVGVG +RVR LF +A+ AP IVFIDEIDA+
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV-GRHRGAGLGG 130
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
+DERE TLNQLLVEMDGF + G++V+A TNRPDILD ALLRPGRFD++I +D PD+ G
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427
R +I +I+ + L + + + +A TPGF GAD+ N+ NEAAL+AAR +ITM+
Sbjct: 191 RKKILEIHTRNKPLAEDVNL--EIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248
Query: 428 FEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 487
FE AIDRVI G +K+ +IS E+R +AYHE+GHAV + + EP+ +++I+PRG AL
Sbjct: 249 FEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKAL 308
Query: 488 GFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVA 546
G+ ++P E+ L+++ +L D LGGRAAE+V+ G +++GA ND+E+ T++ V
Sbjct: 309 GYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVC 368
Query: 547 VYGFSDKVGLLSFPQRDDTF----EMT--KPYSSKTGAIIDNEVREWVGKAYDHTVKLIE 600
G S+++G L++ + + E+T + YS + + ID EV++ V Y+ ++I
Sbjct: 369 QLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIR 428
Query: 601 EHREHVAQIAEELLEKEVLHQDDLVRVLGE 630
++R+ + I E LLEKE + D+L R+L E
Sbjct: 429 KYRKQLDNIVEILLEKETIEGDELRRILSE 458
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 223/444 (50%), Positives = 296/444 (66%), Gaps = 7/444 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
KV FKDVAG +EAK+E+ E V FLKNP ++ E+GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF++ SGSDF+EMFVGVG +RVR LF+ A++ AP IVFIDEIDA+
Sbjct: 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV-GRKRGSGVGG 145
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
Query: 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427
R+QI +I+ + L + LA TPGF GAD+ N+ NEAAL+AAR +ITM+
Sbjct: 206 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263
Query: 428 FEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 487
E A DRV+ KK+ V+S +RR AYHE+GHA+A FLEHA+ + KVTIVPRG AL
Sbjct: 264 LEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR-AL 322
Query: 488 GFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 547
GF + L ++++L D + L GRAAE+++ ++TGA+ND + T++ +
Sbjct: 323 GFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITE 382
Query: 548 YGFSDKVGLLSFPQRDDTFEM---TKPYSSKTGAIIDNEVREWVGKAYDHTVKLIEEHRE 604
+G + G +++ R+DT+ + YS +T ID VR + + Y L+ E RE
Sbjct: 383 WGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKRE 442
Query: 605 HVAQIAEELLEKEVLHQDDLVRVL 628
+ ++AE LLE+E L ++ RV+
Sbjct: 443 VLERVAETLLERETLTAEEFQRVV 466
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 223/444 (50%), Positives = 296/444 (66%), Gaps = 7/444 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
KV FKDVAG +EAK+E+ E V FLKNP ++ E+GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF++ SGSDF+EMFVGVG +RVR LF+ A++ AP IVFIDEIDA+
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV-GRKRGSGVGG 154
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427
R+QI +I+ + L + LA TPGF GAD+ N+ NEAAL+AAR +ITM+
Sbjct: 215 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Query: 428 FEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 487
E A DRV+ KK+ V+S +RR AYHE+GHA+A FLEHA+ + KVTIVPRG AL
Sbjct: 273 LEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR-AL 331
Query: 488 GFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 547
GF + L ++++L D + L GRAAE+++ ++TGA+ND + T++ +
Sbjct: 332 GFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITE 391
Query: 548 YGFSDKVGLLSFPQRDDTFEM---TKPYSSKTGAIIDNEVREWVGKAYDHTVKLIEEHRE 604
+G + G +++ R+DT+ + YS +T ID VR + + Y L+ E RE
Sbjct: 392 WGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKRE 451
Query: 605 HVAQIAEELLEKEVLHQDDLVRVL 628
+ ++AE LLE+E L ++ RV+
Sbjct: 452 VLERVAETLLERETLTAEEFQRVV 475
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/258 (60%), Positives = 194/258 (75%), Gaps = 3/258 (1%)
Query: 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
K V FKD+AG +EAK+E++E V FLK P++Y LGAKIPKG LLVGPPGTGKTLLAKA
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
AGE+ VPF SM GS F+EMFVG+G SRVR LF+ A++ APSI+FIDEIDAI
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 306 XXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPD 364
NDERE TLNQLL EMDGFG+ A V+VLA TNRP+ILD AL+RPGRFDRQ+ +DKPD
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 365 IKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQIT 424
GR +I ++++K +KL N+ + Q +A LT G AGAD+AN+ NEAAL+A RN ++
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNL--QEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 425 MQHFEAAIDRVIGGLEKK 442
QH + A++R I GLEKK
Sbjct: 243 QQHLKEAVERGIAGLEKK 260
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 155/260 (59%), Positives = 195/260 (75%)
Query: 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGE 248
V FKDVAG EAK E+ EFV +LK+P+++ +LGAK+PKGALL+GPPG GKTLLAKA A E
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 249 SGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXXX 308
+ VPFL+M+G++F+E+ G+G +RVRSLF+EAR AP IV+IDEIDA+
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 309 NDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGR 368
N E E TLNQLLVEMDG GTT V+VLA TNR DILD AL+RPGR DR + ID P ++ R
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 369 DQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHF 428
+IF+ +LK LKL +FYSQRLA LTPGF+GADIAN+CNEAAL AAR + +F
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 242
Query: 429 EAAIDRVIGGLEKKNKVISK 448
E A++RV+ G KK+K++SK
Sbjct: 243 EYAVERVLAGTAKKSKILSK 262
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 142/253 (56%), Positives = 190/253 (75%), Gaps = 3/253 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
K F DVAGCDEAK+E+ E V +L+ P ++++LG KIPKG L+VGPPGTGKTLLAKA AG
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF ++SGSDF+EMFVGVG SRVR +F++A++ AP I+FIDEIDA+
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV-GRQRGAGLGG 126
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
+DERE TLNQ+LVEMDGF G++V+A TNRPD+LD ALLRPGRFDRQ+ + PD++G
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427
R+QI +++++++ L P + +A TPGF+GAD+AN+ NEAAL AAR ++M
Sbjct: 187 REQILKVHMRRVPL--APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244
Query: 428 FEAAIDRVIGGLE 440
FE A D+++ GLE
Sbjct: 245 FEKAKDKIMMGLE 257
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 148/244 (60%), Positives = 178/244 (72%), Gaps = 3/244 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
KV FKDVAG +EAK+E+ E V FLKNP ++ E+GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF++ SGSDF+EMFVGVG +RVR LF+ A++ AP IVFIDEIDA+
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV-GRKRGSGVGG 154
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427
R+QI +I+ + L + LA TPGF GAD+ N+ NEAAL+AAR +ITM+
Sbjct: 215 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Query: 428 FEAA 431
E A
Sbjct: 273 LEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/246 (60%), Positives = 181/246 (73%), Gaps = 7/246 (2%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
KV FKDVAG +EAK+E+ E V FLKNP ++ E+GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
E+ VPF++ SGSDF+EMFVGVG +RVR LF+ A++ AP IVFIDEIDA+
Sbjct: 72 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV-GRKRGSGVGG 130
Query: 308 XNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 131 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
Query: 368 RDQIFQIYL--KKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
R+QI +I+ K L D + + ++R TPGF GAD+ N+ NEAAL+AAR +ITM
Sbjct: 191 REQILRIHARGKPLAEDVDLALLAKR----TPGFVGADLENLLNEAALLAAREGRRKITM 246
Query: 426 QHFEAA 431
+ E A
Sbjct: 247 KDLEEA 252
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 163/257 (63%), Gaps = 4/257 (1%)
Query: 181 MDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKT 239
M+++ + V ++D+ G ++ QEI E V LK+P+ +E++G + PKG LL GPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 240 LLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXX 299
LLAKA A E+ F+ + GS+ ++ F+G G S V+ +F+ A++ APSI+FIDEIDAI
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAI-AA 124
Query: 300 XXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQIT 359
+ E + TL QLL EMDGF V ++ TNRPDILD A+LRPGRFDR I
Sbjct: 125 KRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIE 184
Query: 360 IDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419
+ PD KGR +I +I+ +K+ L + + + +A +T G GA++ +C EA + A R
Sbjct: 185 VPAPDEKGRLEILKIHTRKMNLAEDVNL--EEIAKMTEGCVGAELKAICTEAGMNAIREL 242
Query: 420 SAQITMQHFEAAIDRVI 436
+TM F A+++++
Sbjct: 243 RDYVTMDDFRKAVEKIM 259
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 155/274 (56%), Gaps = 9/274 (3%)
Query: 178 ITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGT 236
++ M M+ + D+ G + QEI E V L +P+ YEE+G K PKG +L G PGT
Sbjct: 168 VSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGT 227
Query: 237 GKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAI 296
GKTLLAKA A ++ FL + GS+ ++ ++G GP R +F+ A + APSIVFIDEIDAI
Sbjct: 228 GKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287
Query: 297 XXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDR 356
E + T+ +LL ++DGF V V+ TN+ + LD AL+RPGR DR
Sbjct: 288 GTKRYDSNSGGER-EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDR 346
Query: 357 QITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416
+I + PD+ + +I I+ K+ L + + + L +GADI +C EA L+A
Sbjct: 347 KILFENPDLSTKKKILGIHTSKMNLSEDVNL--ETLVTTKDDLSGADIQAMCTEAGLLAL 404
Query: 417 RNESAQITMQHFEAAIDRVIGGLEKKNKVISKLE 450
R Q+T + F+ A +RV+ KNKV LE
Sbjct: 405 RERRMQVTAEDFKQAKERVM-----KNKVEENLE 433
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 151/266 (56%), Gaps = 4/266 (1%)
Query: 177 TITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPG 235
++T M + K V + DV GC + +++ E V L +P+++ LG PKG LL GPPG
Sbjct: 194 SVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPG 253
Query: 236 TGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDA 295
TGKTL A+A A + F+ + GS+ ++ +VG G VR LF+ AR I+F DEIDA
Sbjct: 254 TGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDA 313
Query: 296 IXXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFD 355
+ N E + T+ +L+ ++DGF + V+ TNRP+ LD ALLRPGR D
Sbjct: 314 VGGARFDDGAGGDN-EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRID 372
Query: 356 RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415
R++ PD++GR IF+I+ K + + E + ++ L P GA++ +VC EA + A
Sbjct: 373 RKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRSVCTEAGMFA 430
Query: 416 ARNESAQITMQHFEAAIDRVIGGLEK 441
R T + F A+D+VI G +K
Sbjct: 431 IRARRKVATEKDFLKAVDKVISGYKK 456
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 152/257 (59%), Gaps = 4/257 (1%)
Query: 194 VAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP 252
V G + +EI E + +K+P+ +E LG PKG +L GPPGTGKTLLA+A A +
Sbjct: 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209
Query: 253 FLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXXXNDER 312
F+ +SG++ ++ ++G G VR LF AR+ APSI+F+DEID+I + E
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI-GSTRVEGSGGGDSEV 268
Query: 313 ESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIF 372
+ T+ +LL ++DGF T+ + ++ TNR DILD ALLRPGR DR+I P + R +I
Sbjct: 269 QRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEIL 328
Query: 373 QIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432
+I+ +K+ L + +++A G +GAD+ VC EA + A R +T + FE A+
Sbjct: 329 RIHSRKMNLTRGINL--RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAV 386
Query: 433 DRVIGGLEKKNKVISKL 449
+V+ ++ ++KL
Sbjct: 387 GKVMNKNQETAISVAKL 403
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 158/273 (57%), Gaps = 7/273 (2%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPP 234
+ + M+++ K + DV G D+ +E++E + +K K++++G + PKGAL+ GPP
Sbjct: 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPP 224
Query: 235 GTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEID 294
GTGKTLLA+A A ++ FL ++ ++M++G G VR F A++ AP+I+FIDE+D
Sbjct: 225 GTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
Query: 295 AIXXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRF 354
AI + E + T+ +LL ++DGF + V VLA TNR D+LD ALLR GR
Sbjct: 285 AI-GTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRL 343
Query: 355 DRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414
DR+I P R QI QI+ +K+ D++ ++ Q LA T F GA + V EA +I
Sbjct: 344 DRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW--QELARSTDEFNGAQLKAVTVEAGMI 401
Query: 415 AARNESAQITMQHFEAAIDRVIGGLEKKNKVIS 447
A RN + + + F I V +K+K +S
Sbjct: 402 ALRNGQSSVKHEDFVEGISEVQA---RKSKSVS 431
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
++V + DV GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A E+G F ++G + M G S +R F+EA + AP+I+FIDE+DAI
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI----APKRE 314
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI 365
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
GR +I QI+ K +KL ++ +++A T G GAD+A +C+EAAL A R + I +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 426 Q 426
+
Sbjct: 433 E 433
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
++V + DV GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A E+G F ++G + M G S +R F+EA + AP+I+FIDE+DAI
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI----APKRE 314
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI 365
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
GR +I QI+ K +KL ++ +++A T G GAD+A +C+EAAL A R + I +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 426 Q 426
+
Sbjct: 433 E 433
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 4/229 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA 246
+V ++D+ G ++ K+E+ E V + +++P K+ + G KG L GPPG GKTLLAKA A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 247 GESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXX 306
E F+S+ G + + M+ G + VR +F +ARQ AP ++F DE+D+I
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 307 XXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIK 366
+ +NQ+L EMDG T V ++ TNRPDI+D A+LRPGR D+ I I PD K
Sbjct: 593 GGG-AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 367 GRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415
R I + L+K + + + LA +T GF+GAD+ +C A +A
Sbjct: 652 SRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
++V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A E+G F ++G + M G S +R F+EA + AP+I+FIDE+DAI
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI----APKRE 314
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI 365
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
GR +I QI+ K +KL ++ +++A T G GAD+A +C+EAAL A R + I +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 426 Q 426
+
Sbjct: 433 E 433
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
++V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A E+G F ++G + M G S +R F+EA + AP+I+FIDE+DAI
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI----APKRE 314
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI 365
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
GR +I QI+ K +KL ++ +++A T G GAD+A +C+EAAL A R + I +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 426 Q 426
+
Sbjct: 433 E 433
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
++V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A E+G F ++G + M G S +R F+EA + AP+I+FIDE+DAI
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI----APKRE 314
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI 365
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
GR +I QI+ K +KL ++ +++A T G GAD+A +C+EAAL A R + I +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 426 Q 426
+
Sbjct: 433 E 433
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 245
++V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A E+G F ++G + M G S +R F+EA + AP+I+FIDE+DAI
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI----APKRE 314
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI 365
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425
GR +I QI+ K +KL ++ +++A T G GAD+A +C+EAAL A R + I +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 426 Q 426
+
Sbjct: 433 E 433
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 4/229 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA 246
+V ++D+ G ++ K+E+ E V + +++P K+ + G KG L GPPG GKTLLAKA A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 247 GESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXX 306
E F+S+ G + + M+ G + VR +F +ARQ AP ++F DE+D+I
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 307 XXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIK 366
+ +NQ+L EMDG T V ++ TNRPDI+D A+LRPGR D+ I I PD K
Sbjct: 593 GGG-AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 367 GRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415
R I + L+K + + + LA +T GF+GAD+ +C A +A
Sbjct: 652 SRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 137/249 (55%), Gaps = 4/249 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA 246
++ F + G E +E+ E + LKNP+ ++ +G K PKG LL GPPGTGKTLLAKA A
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 247 GESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXX 306
G F+ S ++ ++G +R +F A++ P I+F+DE+DAI
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAI-GGRRFSEGT 295
Query: 307 XXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIK 366
+ E + TL +LL +MDGF ++ TNRPD LD ALLRPGR DR++ I P+
Sbjct: 296 SADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355
Query: 367 GRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQ 426
GR +IF+I+ K+K E F + ++ GF GADI N EA A R++ I
Sbjct: 356 GRLEIFKIHTAKVKKTGEFDFEAA--VKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413
Query: 427 HFEAAIDRV 435
A+ +V
Sbjct: 414 DLMKAVRKV 422
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 139/260 (53%), Gaps = 9/260 (3%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPP 234
++I+ M N K V + DV G D KQEI E V L YE++G P+G LL GPP
Sbjct: 156 SSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPP 215
Query: 235 GTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEID 294
GTGKT+L KA A + F+ ++GS+F+ ++G GP VR +F+ AR+ APSI+FIDE+D
Sbjct: 216 GTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275
Query: 295 AIXXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRF 354
+I + E + L +LL +MDGF + V V+ TNR D LD ALLRPGR
Sbjct: 276 SI-ATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRL 334
Query: 355 DRQITIDKPDIKGRDQ---IFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEA 411
DR+I P ++ R + IF K+ L E S L +GA IA + EA
Sbjct: 335 DRKIEF--PSLRDRRERRLIFGTIASKMSLAPEADLDS--LIIRNDSLSGAVIAAIMQEA 390
Query: 412 ALIAARNESAQITMQHFEAA 431
L A R I E A
Sbjct: 391 GLRAVRKNRYVILQSDLEEA 410
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 4/229 (1%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA 246
+V ++D+ G ++ K+E+ E V + +++P K+ + G KG L GPPG GKTLLAKA A
Sbjct: 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70
Query: 247 GESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXX 306
E F+S+ G + + M+ G + VR +F +ARQ AP ++F DE+D+I
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 307 XXNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIK 366
+ +NQ+L EMDG T V ++ TNRPDI+D A+LRPGR D+ I I PD K
Sbjct: 131 GGG-AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189
Query: 367 GRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415
R I + L+K + + + LA +T GF+GAD+ +C A +A
Sbjct: 190 SRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 149/277 (53%), Gaps = 29/277 (10%)
Query: 189 VFFKDVAGCDEAKQEI-MEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247
V + D+ ++ ++E+ M + ++NP +++ LG P G LL GPPG GKTLLAKA A
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXXXX 307
ESG+ F+S+ G + + M+VG VR +FQ A+ AP ++F DE+DA+
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL---------CP 117
Query: 308 XNDERES-----TLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDK 362
+RE+ +NQLL EMDG V ++A TNRPDI+D A+LRPGR D+ + +
Sbjct: 118 RRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 177
Query: 363 PDIKGRDQIFQIYLK---KLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419
P R I + K K LD + + + + GAD++ + EA++ A R E
Sbjct: 178 PPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQE 237
Query: 420 SAQ-----------ITMQHFEAAIDRVIGGLEKKNKV 445
A+ ++ +HFE A +V + KK+++
Sbjct: 238 MARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQI 274
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 139/268 (51%), Gaps = 32/268 (11%)
Query: 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLVGPPGTGKTLLAKA 244
KV + D+AG D AKQ + E V P EL G + P KG LL GPPG GKTLLA+A
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVIL---PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73
Query: 245 TAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXX 304
A E FL++S + +VG G VR+LF AR PSI+FIDE+D+
Sbjct: 74 VATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDS----LLSER 129
Query: 305 XXXXNDERESTLNQLLVEMDGF-GTTAG--VVVLAGTNRPDILDKALLRPGRFDRQITID 361
++ + LVE DG G G +VVLA TNRP LD+A LR RF +++ +
Sbjct: 130 SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVS 187
Query: 362 KPDIKGRDQIFQIYLKKL--KLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419
PD + R+ + L+K LD E +RLA +T G++G+D+ + +AAL R
Sbjct: 188 LPDEQTRELLLNRLLQKQGSPLDTEA---LRRLAKITDGYSGSDLTALAKDAALEPIREL 244
Query: 420 SAQ------------ITMQHFEAAIDRV 435
+ + IT Q F +++ R+
Sbjct: 245 NVEQVKCLDISAMRAITEQDFHSSLKRI 272
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 137/251 (54%), Gaps = 22/251 (8%)
Query: 175 KATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLV 231
+ ++ ++ K V ++DVAG + AK+ + E V P K+ L G + P G LL
Sbjct: 34 RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLY 90
Query: 232 GPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFID 291
GPPGTGK+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSI+FID
Sbjct: 91 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 150
Query: 292 EIDAIXXXXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLR 350
++DA+ ++ +LLV+M+G G + GV+VL TN P LD A+ R
Sbjct: 151 QVDAL----TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 206
Query: 351 PGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQR----LAALTPGFAGADIAN 406
RF+R+I I PD+ R +F+I + + PS ++ L A+T G++G+DIA
Sbjct: 207 --RFERRIYIPLPDLAARTTMFEI-----NVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259
Query: 407 VCNEAALIAAR 417
V +A + R
Sbjct: 260 VVKDALMQPIR 270
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 136/251 (54%), Gaps = 22/251 (8%)
Query: 175 KATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLV 231
+ + + ++ K V ++DVAG + AK+ + E V P K+ L G + P G LL
Sbjct: 10 RGLVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLY 66
Query: 232 GPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFID 291
GPPGTGK+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSI+FID
Sbjct: 67 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 126
Query: 292 EIDAIXXXXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLR 350
E+DA+ ++ +LLV+M+G G + GV+VL TN P LD A+ R
Sbjct: 127 EVDAL----TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 182
Query: 351 PGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQR----LAALTPGFAGADIAN 406
RF+R+I I PD+ R +F+I + + P ++ L A+T G++G+DIA
Sbjct: 183 --RFERRIYIPLPDLAARTTMFEI-----NVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 235
Query: 407 VCNEAALIAAR 417
V +A + R
Sbjct: 236 VVKDALMQPIR 246
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 136/251 (54%), Gaps = 22/251 (8%)
Query: 175 KATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLV 231
+ ++ ++ K V ++DVAG + AK+ + E V P K+ L G + P G LL
Sbjct: 19 RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLY 75
Query: 232 GPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFID 291
GPPGTGK+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSI+FID
Sbjct: 76 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 135
Query: 292 EIDAIXXXXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLR 350
++DA+ ++ +LLV+M+G G + GV+VL TN P LD A+ R
Sbjct: 136 QVDAL----TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 191
Query: 351 PGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQR----LAALTPGFAGADIAN 406
RF+R+I I PD+ R +F+I + + P ++ L A+T G++G+DIA
Sbjct: 192 --RFERRIYIPLPDLAARTTMFEI-----NVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 244
Query: 407 VCNEAALIAAR 417
V +A + R
Sbjct: 245 VVKDALMQPIR 255
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 133/243 (54%), Gaps = 22/243 (9%)
Query: 183 MNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLVGPPGTGKT 239
++ K V ++DVAG + AK+ + E V P K+ L G + P G LL GPPGTGK+
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 240 LLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXX 299
LAKA A E+ F S+S SD + ++G V+ LF AR+ PSI+FID++DA+
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL--- 122
Query: 300 XXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLRPGRFDRQI 358
++ +LLV+M+G G + GV+VL TN P LD A+ R RF+R+I
Sbjct: 123 -TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRI 179
Query: 359 TIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQR----LAALTPGFAGADIANVCNEAALI 414
I PD+ R +F+I + + P ++ L A+T G++G+DIA V +A +
Sbjct: 180 YIPLPDLAARTTMFEI-----NVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 234
Query: 415 AAR 417
R
Sbjct: 235 PIR 237
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 17/235 (7%)
Query: 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLVGPPGTGKTLLAKAT 245
V + DVAG + AK+ + E V P K+ L G + P +G LL GPPGTGK+ LAKA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 187
Query: 246 AGESG-VPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXX 304
A E+ F S+S SD + ++G V++LFQ AR+ PSI+FIDEID++
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL----CGSR 243
Query: 305 XXXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 363
++ + LV+M G G G++VL TN P +LD A+ R RF+++I I P
Sbjct: 244 SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
Query: 364 DIKGRDQIFQIYLKKLKLD-NEPSFYSQRLAALTPGFAGADIANVCNEAALIAAR 417
+ R +F+++L + E F Q L T G++GADI+ + +A + R
Sbjct: 302 EAHARAAMFRLHLGSTQNSLTEADF--QELGRKTDGYSGADISIIVRDALMQPVR 354
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 129/238 (54%), Gaps = 17/238 (7%)
Query: 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLVGPPGTGKTLLA 242
+ V + DVAG + AK+ + E V P K+ L G + P +G LL GPPGTGK+ LA
Sbjct: 6 RPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62
Query: 243 KATAGESG-VPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXX 301
KA A E+ F S+S SD + ++G V++LFQ AR+ PSI+FIDEID++
Sbjct: 63 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL----C 118
Query: 302 XXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDILDKALLRPGRFDRQITI 360
++ + LV+M G G G++VL TN P +LD A+ R RF+++I I
Sbjct: 119 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 361 DKPDIKGRDQIFQIYLKKLKLD-NEPSFYSQRLAALTPGFAGADIANVCNEAALIAAR 417
P+ R +F+++L + E F + L T G++GADI+ + +A + R
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADF--RELGRKTDGYSGADISIIVRDALMQPVR 232
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 25/235 (10%)
Query: 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL--GAKIP-KGALLVGPPGTGKTLLAKAT 245
V F D+AG D AKQ + E V P EL G + P +G LL GPPG GKT+LAKA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAV 168
Query: 246 AGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXXXXXX 305
A ES F ++S + +VG G VR+LF AR+ PSI+FID++D++
Sbjct: 169 AAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL----LCERR 224
Query: 306 XXXNDERESTLNQLLVEMDGFGTTAG---VVVLAGTNRPDILDKALLRPGRFDRQITIDK 362
+D + L+E DG +AG V+V+ TNRP LD+A+LR RF +++ +
Sbjct: 225 EGEHDASRRLKTEFLIEFDGV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSL 281
Query: 363 PDIKGRDQIFQIYLKKLKLDNEPSFYSQR----LAALTPGFAGADIANVCNEAAL 413
P+ + R + + L K + S +Q+ LA +T G++G+D+ + +AAL
Sbjct: 282 PNEETRLLLLKNLLCK-----QGSPLTQKELAQLARMTDGYSGSDLTALAKDAAL 331
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 21/244 (8%)
Query: 183 MNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLL 241
M+ V ++D+AG + AK I E V + + P + L PKG LL GPPGTGKTL+
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLI 133
Query: 242 AKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIXXXXX 301
K A +SG F S+S S +VG G VR+LF AR P+++FIDEID++
Sbjct: 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL----- 188
Query: 302 XXXXXXXNDERESTL---NQLLVEMDGFGTTA--GVVVLAGTNRPDILDKALLRPGRFDR 356
+ E ES+ + LV++DG T++ ++V+ TNRP +D+A R R +
Sbjct: 189 --LSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVK 244
Query: 357 QITIDKPDIKGRDQIFQIYLKKLK--LDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414
++ I P+ R QI + K + L E +++ + F+GAD+ +C EA+L
Sbjct: 245 RLYIPLPEASARKQIVINLMSKEQCCLSEE---EIEQIVQQSDAFSGADMTQLCREASLG 301
Query: 415 AARN 418
R+
Sbjct: 302 PIRS 305
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 14/223 (6%)
Query: 446 ISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LMTKEQ 504
IS E+ +A HE+GHA+ G + + + K++I+PRG A LG Q +P E+ + K+
Sbjct: 11 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMA-LGVTQQLPIEDKHIYDKKD 69
Query: 505 LFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQR 562
L++ + LGGRAAE+V GK I+TGA+NDL++ T + Y V+++G SDKVG ++ +
Sbjct: 70 LYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRV 129
Query: 563 DDTF--EMTKPYSSKTGAI--IDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEV 618
+ F MT + + ID EV+ + + Y+ ++EE++E + + ++LLEKE
Sbjct: 130 ANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKET 189
Query: 619 LHQDDLVRVLGERPFKHSEPTNYDRFKKGFLED-DKESKETKE 660
+ ++ V V FK D+ KK L D D++S+E KE
Sbjct: 190 ITCEEFVEV-----FKLYGIELKDKCKKEELFDKDRKSEENKE 227
>pdb|2LNA|A Chain A, Solution Nmr Structure Of The Mitochondrial Inner Membrane
Domain (Residues 164-251), Ftsh_ext, From The
Paraplegin-Like Protein Afg3l2 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr6741a
Length = 99
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 26 QISFQEFKNKLLEPGLVDRIVVTNKSVAKVFVKSTPRSTNETNDDFTQSPVNGSPDKRNL 85
+I++++F N L G+VDR+ V NK +V TP T PV+G
Sbjct: 17 EITWKDFVNNYLSKGVVDRLEVVNKRFVRV--TFTPGKT----------PVDGQ------ 58
Query: 86 SQCKYYFNIGSVESFEEKLEEAQEALGIDPHDYIPVTY 123
+FNIGSV++FE LE Q+ LGI+ + +PV Y
Sbjct: 59 ---YVWFNIGSVDTFERNLETLQQELGIEGENRVPVVY 93
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 363 PDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQ 422
PD++GR IF+I+ K + + E + ++ L P GA++ +VC EA + A R
Sbjct: 8 PDLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKV 65
Query: 423 ITMQHFEAAIDRVIGGLEK 441
T + F A+D+VI G +K
Sbjct: 66 ATEKDFLKAVDKVISGYKK 84
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 363 PDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQ 422
P+ + R I +I+ +K+ L + +++A L PG +GA++ VC EA + A R
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVH 68
Query: 423 ITMQHFEAAIDRVI 436
+T + FE A+ +V+
Sbjct: 69 VTQEDFEMAVAKVM 82
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 211 LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGP 270
L+ P ++E PK L++GP G GKT +A+ A + PF+ + + F E VG
Sbjct: 40 LQEPLRHE----VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVG 93
Query: 271 SRVRSLFQEARQCA---------PSIVFIDEIDAI 296
V S+ ++ A IVFIDEID I
Sbjct: 94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 180 KMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALL--VGPPGTG 237
K+D+ ++ ++ G ++ K+ I+E++ K K KG +L GPPG G
Sbjct: 69 KLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL--------KGPILCLAGPPGVG 120
Query: 238 KTLLAKATAGESGVPFLSMSGSDFME---------MFVGVGPSRVRSLFQEARQCAPSIV 288
KT LAK+ A G F+ +S + +VG P R+ ++A + P +
Sbjct: 121 KTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VF 179
Query: 289 FIDEIDAI 296
+DEID +
Sbjct: 180 LLDEIDKM 187
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 364 DIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423
D++GR IF+I+ K + E + ++ L P GA++ +VC EA A R
Sbjct: 2 DLEGRANIFRIHSKSXSV--ERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVA 59
Query: 424 TMQHFEAAIDRVIGGLEK 441
T + F A+D+VI G +K
Sbjct: 60 TEKDFLKAVDKVISGYKK 77
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 363 PDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQ 422
P+ + R I +I+ +K L + +++A L PG +GA++ VC EA A R
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINL--RKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 423 ITMQHFEAAIDRV 435
+T + FE A+ +V
Sbjct: 61 VTQEDFEXAVAKV 73
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 192 KDVAGCDEAKQEI-MEFVHFLKNPKKYEELGAKI-PKGALLVGPPGTGKTLLAKATAGES 249
K + G D AK+ + + + + + EEL ++ PK L++GP G GKT +A+ A +
Sbjct: 15 KHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74
Query: 250 GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEID 294
PF+ + + F E VG V S+ ++ A +V + I+
Sbjct: 75 NAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAVKMVRVQAIE 117
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 192 KDVAGCDEAKQEI-MEFVHFLKNPKKYEELGAKI-PKGALLVGPPGTGKTLLAKATAGES 249
K + G D AK+ + + + + + EEL ++ PK L++GP G GKT +A+ A +
Sbjct: 14 KHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 250 GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEID 294
PF+ + + F E VG V S+ ++ A +V + I+
Sbjct: 74 NAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAVKMVRVQAIE 116
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 192 KDVAGCDEAKQEI-MEFVHFLKNPKKYEELGAKI-PKGALLVGPPGTGKTLLAKATAGES 249
K + G D AK+ + + + + + EEL ++ PK L++GP G GKT +A+ A +
Sbjct: 21 KHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLA 80
Query: 250 GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEID 294
PF+ + + F E VG V S+ ++ A +V + I+
Sbjct: 81 NAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAVKMVRVQAIE 123
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDF 261
+ LL GPPGTGKT LA A A E G VPF M GS+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSR-VRSLFQEARQCAPSI 287
LL GPP +GKT LA A ES PF+ + D M F + ++ +F +A + S
Sbjct: 67 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSC 126
Query: 288 VFIDEIDAI 296
V +D+I+ +
Sbjct: 127 VVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSR-VRSLFQEARQCAPS 286
LL GPP +GKT LA A ES PF+ + D M F + ++ +F +A + S
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 126
Query: 287 IVFIDEIDAI 296
V +D+I+ +
Sbjct: 127 CVVVDDIERL 136
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM-FVGVGPSRVRSLFQEA-----RQ 282
LL+GP G+GKTL+A+ A +P + E +VG + + +A ++
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQK 135
Query: 283 CAPSIVFIDEIDAI 296
IVFIDEID I
Sbjct: 136 AQKGIVFIDEIDKI 149
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 211 LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGP 270
L+ P ++E PK L++GP G GKT +A+ A + PF+ + + F E VG
Sbjct: 40 LQEPLRHE----VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVG 93
Query: 271 SRVRSLFQEARQCAPSIVFIDEI 293
V S+ ++ A +V EI
Sbjct: 94 KEVDSIIRDLTDSAMKLVRQQEI 116
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 211 LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGP 270
L+ P ++E PK L +GP G GKT +A+ A + PF+ + + F E VG
Sbjct: 40 LQEPLRHE----VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVG 93
Query: 271 SRVRSLFQEARQCAPSIVFIDEI 293
V S+ ++ A +V EI
Sbjct: 94 KEVDSIIRDLTDSAXKLVRQQEI 116
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM-FVGVGPSR-VRSLFQ----EARQ 282
LL+GP G+GKTLLA+ A VPF + E +VG ++ L Q + ++
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 114
Query: 283 CAPSIVFIDEIDAI 296
IV+ID+ID I
Sbjct: 115 AQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM-FVGVGPSR-VRSLFQ----EARQ 282
LL+GP G+GKTLLA+ A VPF + E +VG ++ L Q + ++
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 114
Query: 283 CAPSIVFIDEIDAI 296
IV+ID+ID I
Sbjct: 115 AQRGIVYIDQIDKI 128
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 181 MDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTL 240
+D + K + G + A++ V +K+ K + LL GPPGTGKT
Sbjct: 40 LDESGLAKQAASGLVGQENAREACGVIVELIKSKKXA-------GRAVLLAGPPGTGKTA 92
Query: 241 LAKATAGESG--VPFLSMSGSDF 261
LA A A E G VPF GS+
Sbjct: 93 LALAIAQELGSKVPFCPXVGSEV 115
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 221 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260
G+ + + A+L GPPG GKT A A E G L + SD
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 209 HFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA----GESGVP-FLSMSGSDFME 263
H +K K Y + G+ +P L GPPG GKT A A A GE+ FL ++ SD
Sbjct: 32 HIVKRLKHYVKTGS-MPH-LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--- 86
Query: 264 MFVGVGPSRVRSLFQEARQCAP------SIVFIDEIDAI 296
G + +R +E + P I+F+DE DA+
Sbjct: 87 ---ERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 48/115 (41%), Gaps = 29/115 (25%)
Query: 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA----GE 248
+V G DE Q + +V P L GPPGTGKT A A A GE
Sbjct: 18 EVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARDLFGE 65
Query: 249 SGVP-FLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAP------SIVFIDEIDAI 296
+ F+ M+ SD G VR +E + AP I+F+DE DA+
Sbjct: 66 NWRDNFIEMNASD------ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 229 LLVGPPGTGKTLLAKATA----GESGVP-FLSMSGSDFMEMFVGVGPSRVRSLFQEARQC 283
L GPPGTGKT A A A GE+ F+ M+ SD G VR +E +
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFART 95
Query: 284 AP------SIVFIDEIDAI 296
AP I+F+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CA 284
+L GPPGTGKT LA+ A + +S V G +R + ARQ
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAGR 106
Query: 285 PSIVFIDEI 293
+I+F+DE+
Sbjct: 107 RTILFVDEV 115
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 26/121 (21%)
Query: 192 KDVAGCDEAKQEIMEFVHF----LKNPKKYEELGAKIPKGALL-VGPPGTGKTLLAK--- 243
K V G DEA + + + + LK+P + P G+ L +GP G GKT LAK
Sbjct: 558 KRVVGQDEAIRAVADAIRRARAGLKDPNR--------PIGSFLFLGPTGVGKTELAKTLA 609
Query: 244 ATAGESGVPFLSMSGSDFME-----MFVGVGPSRV-----RSLFQEARQCAPSIVFIDEI 293
AT ++ + + +++ME +G P V L + R+ S++ DEI
Sbjct: 610 ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEI 669
Query: 294 D 294
+
Sbjct: 670 E 670
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIV 288
LL GPPG GKT LA A E GV SG + P + ++ + + I+
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANSLEEG-DIL 94
Query: 289 FIDEI 293
FIDEI
Sbjct: 95 FIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIV 288
LL GPPG GKT LA A E GV SG + P + ++ + + I+
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANSLEEG-DIL 94
Query: 289 FIDEI 293
FIDEI
Sbjct: 95 FIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIV 288
LL GPPG GKT LA A E GV SG + P + ++ + + I+
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANSLEEG-DIL 94
Query: 289 FIDEI 293
FIDEI
Sbjct: 95 FIDEI 99
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQC 283
+ L+ G PGTGKT +A A G PF +++GS+ + + S+ +L Q R+
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM----SKTEALTQAFRRS 126
Query: 284 --------APSIVFIDEIDAI 296
A V + EID I
Sbjct: 127 IGVRIKAGAVHTVSLHEIDVI 147
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSM 256
LL G PG GKT L K A +SG+ ++++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFMEM 264
+ L+ G PGTGKT +A A G PF +++GS+ +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSL 126
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 218 EELGAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFL----SMSGSDFMEMFVGVGP 270
E L + +L+G PG GKT +A+ A + + VP + + D + G
Sbjct: 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFE 253
Query: 271 SRVRSLFQEARQCAPSIVFID-EIDA 295
R++ + E RQ I+FID IDA
Sbjct: 254 DRLKKVMDEIRQAGNIILFIDAAIDA 279
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 211 LKNPKKYEELGAKIPKGALL-VGPPGTGKTLLAKATA-----GESGVPFLSMSGSDFMEM 264
LK+PK+ P G+ + +GP G GKT LA+A A E + + M S++ME
Sbjct: 514 LKDPKR--------PIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM--SEYMEK 563
Query: 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEID 294
G L ++ R+ S+V +D I+
Sbjct: 564 HSTSGG----QLTEKVRRKPYSVVLLDAIE 589
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 364 DIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423
D + + IF K+ L E + A +GADI ++C E+ ++A R +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDL--EDYVARPDKISGADINSICQESGMLAVRENRYIV 59
Query: 424 TMQHFEAAIDRVIGGLEKKN 443
+ FE A VI E+++
Sbjct: 60 LAKDFEKAYKTVIKKDEQEH 79
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 218 EELGAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFL----SMSGSDFMEMFVGVGP 270
E L + +L+G PG GKT +A+ A + + VP + + D + G
Sbjct: 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFE 253
Query: 271 SRVRSLFQEARQCAPSIVFID-EIDA 295
R++ + E RQ I+FID IDA
Sbjct: 254 DRLKKVMDEIRQAGNIILFIDAAIDA 279
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 229 LLVGPPGTGKTLLAKATAGESGVPFLSM 256
LL G PG GKT L K A +SG+ ++++
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGP--SRVRSLFQE 279
KIP L PGTGKT +AKA + + ++GSD FV GP + + +
Sbjct: 45 GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVR-GPLTNFASAASFD 103
Query: 280 ARQCAPSIVFIDEID 294
RQ ++ IDE D
Sbjct: 104 GRQ---KVIVIDEFD 115
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 229 LLVGPPGTGKTLLAKATAG---ESGVPFL----SMSGSDFMEMFVGVG-----PSRVRSL 276
LLVG G GKT +A+ A + VP + ++ D + G R ++L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 277 FQEARQCAPSIVFIDEIDAI 296
++ Q SI+FIDEI I
Sbjct: 271 LKQLEQDTNSILFIDEIHTI 290
>pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Synechocystis Sp
Length = 135
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 180 KMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE 218
K N + D+AG + + ++ V FLKNPK Y+
Sbjct: 45 KTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYD 83
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 590 KAYDHTV--KLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGE 630
K Y HTV LI RE +AQIAEE LE ++ + + ++L E
Sbjct: 254 KRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE 296
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 218 EELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261
++LG I LL G PG+GK+ +A+A A GVP + D
Sbjct: 5 DDLGGNI---LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45
>pdb|1BLP|A Chain A, Structural Basis For The Inactivation Of The P54 Mutant Of
Beta- Lactamase From Staphylococcus Aureus Pc1
Length = 257
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 92 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKNTSTP 150
Query: 235 GT-GKTL 240
GKTL
Sbjct: 151 AAFGKTL 157
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 93 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 151
Query: 235 GT-GKTL 240
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1DJA|A Chain A, Structure Of Beta-Lactamase Precursor, K73h Mutant, At
298k
Length = 258
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 93 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 151
Query: 235 GT-GKTL 240
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1BLC|A Chain A, Inhibition Of Beta-Lactamase By Clavulanate: Trapped
Intermediates In Cryocrystallographic Studies
pdb|1BLH|A Chain A, Structure Of A Phosphonate-Inhibited Beta-Lactamase. An
Analog Of The Tetrahedral Transition State(Slash)
Intermediate Of Beta-Lactam Hydrolysis
pdb|3BLM|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Staphylococcus Aureus Pc1 At 2.0
Length = 257
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 92 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 150
Query: 235 GT-GKTL 240
GKTL
Sbjct: 151 AAFGKTL 157
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 258
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 93 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 151
Query: 235 GT-GKTL 240
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1DJB|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
298k
pdb|1DJC|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
120k
Length = 257
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 92 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 150
Query: 235 GT-GKTL 240
GKTL
Sbjct: 151 AAFGKTL 157
>pdb|1ALQ|A Chain A, Circularly Permuted Beta-Lactamase From Staphylococcus
Aureus Pc1
Length = 266
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 138 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 196
Query: 235 GT-GKTL 240
GKTL
Sbjct: 197 AAFGKTL 203
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 192 KDVAGCDEAKQEIMEFVHF----LKNPKKYEELGAKIPKGALL-VGPPGTGKTLLAK--- 243
K V G DEA + + + + LK+P + P G+ L +GP G GKT LAK
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLKDPNR--------PIGSFLFLGPTGVGKTELAKTLA 65
Query: 244 ATAGESGVPFLSMSGSDFME-----MFVGVGPSRV-----RSLFQEARQCAPSIVFIDEI 293
AT ++ + + +++ME +G P V L + R+ S++ D I
Sbjct: 66 ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAI 125
Query: 294 D 294
+
Sbjct: 126 E 126
>pdb|1KGF|A Chain A, Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 93 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELQYYSPKSKKDTSTP 151
Query: 235 GT-GKTL 240
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 224 IPKGA----LLVGPPGTGKTLLAKATAGESGVPFLS 255
+P+G+ LL+GPPG GK A A + G+P +S
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50
>pdb|1KGE|A Chain A, Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +YE EL PK P
Sbjct: 93 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYEIELMYYSPKSKKDTSTP 151
Query: 235 GT-GKTL 240
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE-ELGAKIPKGALLVGPP 234
A++T D A +K+ K++ G + KQ + E + NP +Y+ EL PK P
Sbjct: 93 ASMTYSDNTANNKII-KEIGGIKKVKQRLKELGDKVTNPVRYQIELDYYSPKSKKDTSTP 151
Query: 235 GT-GKTL 240
GKTL
Sbjct: 152 AAFGKTL 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,343,406
Number of Sequences: 62578
Number of extensions: 806120
Number of successful extensions: 2801
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2619
Number of HSP's gapped (non-prelim): 118
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)