Query 005738
Match_columns 680
No_of_seqs 605 out of 4005
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0731 AAA+-type ATPase conta 100.0 9E-116 2E-120 987.3 56.1 599 25-647 164-765 (774)
2 COG0465 HflB ATP-dependent Zn 100.0 1E-111 2E-116 941.8 50.9 585 4-634 3-594 (596)
3 KOG0734 AAA+-type ATPase conta 100.0 8E-109 2E-113 879.5 41.3 441 180-631 292-735 (752)
4 CHL00176 ftsH cell division pr 100.0 7.8E-95 1.7E-99 828.5 56.8 569 25-634 50-629 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.1E-91 2.3E-96 810.3 59.6 561 25-635 30-600 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 7.3E-86 1.6E-90 744.4 49.7 486 129-629 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 6E-59 1.3E-63 481.6 26.2 254 183-439 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.7E-56 3.6E-61 534.1 27.4 317 216-559 1621-1995(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 4.6E-50 1E-54 441.7 24.2 247 185-437 427-676 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-48 4.1E-53 422.8 24.0 249 185-439 504-773 (802)
11 KOG0727 26S proteasome regulat 100.0 5.3E-46 1.2E-50 367.7 23.6 258 176-436 139-397 (408)
12 KOG0729 26S proteasome regulat 100.0 1.9E-46 4.2E-51 373.2 18.5 260 179-441 164-424 (435)
13 KOG0726 26S proteasome regulat 100.0 2.3E-46 5E-51 376.6 17.3 251 185-438 178-429 (440)
14 KOG0728 26S proteasome regulat 100.0 1.6E-45 3.6E-50 363.9 21.6 248 187-437 142-390 (404)
15 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-45 2.2E-50 401.5 21.3 227 186-418 184-414 (802)
16 KOG0652 26S proteasome regulat 100.0 2.7E-45 5.8E-50 364.1 20.3 251 184-437 163-414 (424)
17 KOG0736 Peroxisome assembly fa 100.0 2.7E-44 5.9E-49 398.9 22.6 252 181-437 661-934 (953)
18 PF01434 Peptidase_M41: Peptid 100.0 5.7E-45 1.2E-49 367.7 14.7 203 424-627 1-213 (213)
19 KOG0738 AAA+-type ATPase [Post 100.0 7.4E-43 1.6E-47 363.5 21.5 245 185-437 205-471 (491)
20 COG1223 Predicted ATPase (AAA+ 100.0 8E-43 1.7E-47 346.8 19.2 241 184-434 113-354 (368)
21 PTZ00454 26S protease regulato 100.0 9.2E-42 2E-46 373.0 27.2 251 185-438 138-389 (398)
22 PRK03992 proteasome-activating 100.0 4.1E-40 8.9E-45 360.9 27.0 252 185-439 124-376 (389)
23 PTZ00361 26 proteosome regulat 100.0 5.1E-40 1.1E-44 361.6 24.1 251 185-438 176-427 (438)
24 KOG0735 AAA+-type ATPase [Post 100.0 1E-39 2.2E-44 359.4 21.2 228 185-418 660-888 (952)
25 COG0464 SpoVK ATPases of the A 100.0 7.1E-39 1.5E-43 362.4 24.6 247 185-435 235-483 (494)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 2.3E-38 4.9E-43 353.3 25.1 244 186-437 222-465 (489)
27 TIGR01243 CDC48 AAA family ATP 100.0 2E-38 4.4E-43 373.7 25.9 248 186-438 447-713 (733)
28 KOG0739 AAA+-type ATPase [Post 100.0 1.6E-39 3.5E-44 328.3 13.0 226 184-418 125-353 (439)
29 KOG0651 26S proteasome regulat 100.0 3.8E-39 8.3E-44 327.8 13.1 247 186-435 126-373 (388)
30 TIGR01242 26Sp45 26S proteasom 100.0 2.3E-37 5E-42 337.1 25.7 248 185-435 115-363 (364)
31 KOG0737 AAA+-type ATPase [Post 100.0 7E-38 1.5E-42 326.9 19.7 226 185-418 85-314 (386)
32 KOG0730 AAA+-type ATPase [Post 100.0 4.2E-36 9E-41 331.6 18.4 287 187-495 180-477 (693)
33 TIGR03689 pup_AAA proteasome A 100.0 4.9E-35 1.1E-39 326.3 24.7 253 185-440 175-483 (512)
34 KOG0732 AAA+-type ATPase conta 100.0 1.4E-33 3.1E-38 327.2 18.2 248 186-438 259-528 (1080)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-32 2.7E-37 324.7 24.4 246 186-437 172-437 (733)
36 PLN00020 ribulose bisphosphate 100.0 4E-32 8.7E-37 286.5 22.6 261 187-465 110-393 (413)
37 KOG0741 AAA+-type ATPase [Post 100.0 1.3E-32 2.9E-37 295.2 14.2 247 186-436 213-491 (744)
38 KOG0740 AAA+-type ATPase [Post 100.0 7.4E-31 1.6E-35 283.3 17.5 244 185-436 146-405 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 8.1E-22 1.8E-26 207.8 21.3 213 191-416 22-255 (287)
40 KOG0742 AAA+-type ATPase [Post 99.9 2.6E-21 5.6E-26 203.3 19.4 236 187-434 350-611 (630)
41 TIGR02880 cbbX_cfxQ probable R 99.9 4.1E-21 9E-26 202.4 20.2 213 191-417 20-255 (284)
42 TIGR02881 spore_V_K stage V sp 99.9 5.9E-21 1.3E-25 199.0 21.0 212 190-416 4-239 (261)
43 KOG0743 AAA+-type ATPase [Post 99.9 3.8E-21 8.2E-26 206.8 16.3 207 189-407 198-412 (457)
44 PF00004 AAA: ATPase family as 99.9 3.5E-21 7.6E-26 177.9 12.8 130 228-362 1-132 (132)
45 KOG0744 AAA+-type ATPase [Post 99.8 4.7E-20 1E-24 189.5 14.8 241 190-434 140-413 (423)
46 KOG0736 Peroxisome assembly fa 99.8 2.4E-19 5.2E-24 200.9 19.2 257 206-474 412-698 (953)
47 KOG0735 AAA+-type ATPase [Post 99.8 1.6E-18 3.5E-23 192.6 17.8 212 222-436 428-649 (952)
48 PF05496 RuvB_N: Holliday junc 99.8 1.7E-18 3.8E-23 173.0 16.0 190 188-411 20-225 (233)
49 TIGR00635 ruvB Holliday juncti 99.8 4.4E-18 9.5E-23 181.0 20.0 211 190-434 2-228 (305)
50 COG0464 SpoVK ATPases of the A 99.8 2.8E-18 6E-23 194.7 19.6 262 211-481 4-275 (494)
51 PRK00080 ruvB Holliday junctio 99.8 6.8E-18 1.5E-22 181.7 20.7 216 189-435 22-250 (328)
52 TIGR02639 ClpA ATP-dependent C 99.7 2E-17 4.4E-22 195.4 18.2 223 189-437 179-431 (731)
53 COG2255 RuvB Holliday junction 99.7 6.4E-17 1.4E-21 164.6 18.3 214 188-435 22-251 (332)
54 TIGR02902 spore_lonB ATP-depen 99.7 7.4E-17 1.6E-21 183.7 19.6 214 187-433 60-330 (531)
55 TIGR00763 lon ATP-dependent pr 99.7 5.6E-17 1.2E-21 192.7 18.1 164 192-376 320-505 (775)
56 PRK11034 clpA ATP-dependent Cl 99.7 9.7E-17 2.1E-21 188.2 19.1 224 190-438 184-436 (758)
57 COG2256 MGS1 ATPase related to 99.7 7.6E-17 1.6E-21 171.2 16.2 205 188-435 20-238 (436)
58 PRK14956 DNA polymerase III su 99.7 5.2E-16 1.1E-20 171.9 20.1 209 187-432 13-243 (484)
59 PRK14962 DNA polymerase III su 99.7 6.6E-16 1.4E-20 173.0 21.0 203 188-433 10-240 (472)
60 PRK12323 DNA polymerase III su 99.7 5E-16 1.1E-20 175.8 18.8 207 187-430 11-244 (700)
61 PRK04195 replication factor C 99.7 1.1E-14 2.3E-19 164.8 27.7 206 188-432 10-222 (482)
62 PRK07003 DNA polymerase III su 99.7 1.3E-15 2.9E-20 174.3 20.3 207 187-430 11-239 (830)
63 PRK14960 DNA polymerase III su 99.7 2.1E-15 4.5E-20 171.2 20.2 203 187-432 10-240 (702)
64 PRK14961 DNA polymerase III su 99.7 4.3E-15 9.4E-20 162.1 21.0 209 187-432 11-241 (363)
65 TIGR02928 orc1/cdc6 family rep 99.7 5.1E-15 1.1E-19 161.3 20.9 223 190-435 13-274 (365)
66 PRK06645 DNA polymerase III su 99.7 4E-15 8.7E-20 167.5 20.6 213 187-433 16-254 (507)
67 TIGR03345 VI_ClpV1 type VI sec 99.7 2.1E-15 4.6E-20 179.9 18.9 218 189-432 184-428 (852)
68 TIGR00362 DnaA chromosomal rep 99.7 2.9E-15 6.4E-20 165.8 18.7 240 187-467 105-358 (405)
69 PRK14958 DNA polymerase III su 99.7 3.9E-15 8.5E-20 168.4 19.9 203 187-432 11-241 (509)
70 PRK00149 dnaA chromosomal repl 99.6 2.4E-15 5.1E-20 168.8 17.5 222 186-436 116-350 (450)
71 PRK08691 DNA polymerase III su 99.6 4.2E-15 9.1E-20 170.2 19.5 210 187-433 11-242 (709)
72 PRK07994 DNA polymerase III su 99.6 6.3E-15 1.4E-19 169.3 20.7 203 187-432 11-241 (647)
73 PRK14949 DNA polymerase III su 99.6 7.1E-15 1.5E-19 171.3 20.7 193 187-412 11-225 (944)
74 PRK14964 DNA polymerase III su 99.6 7.8E-15 1.7E-19 164.0 19.6 202 188-432 9-238 (491)
75 PRK06893 DNA replication initi 99.6 1.6E-14 3.4E-19 147.9 20.3 212 186-432 10-227 (229)
76 PRK14088 dnaA chromosomal repl 99.6 7.6E-15 1.6E-19 163.8 17.9 224 186-436 99-333 (440)
77 PRK14951 DNA polymerase III su 99.6 1.4E-14 3.1E-19 166.0 20.3 209 187-432 11-246 (618)
78 PRK14963 DNA polymerase III su 99.6 1.8E-14 4E-19 162.6 20.5 202 187-432 9-237 (504)
79 PRK13342 recombination factor 99.6 1.8E-14 3.9E-19 159.9 19.8 199 189-435 9-219 (413)
80 PRK05563 DNA polymerase III su 99.6 2.2E-14 4.9E-19 164.2 21.0 204 186-432 10-241 (559)
81 TIGR03420 DnaA_homol_Hda DnaA 99.6 4.3E-14 9.4E-19 143.5 20.8 206 187-432 10-225 (226)
82 PRK12402 replication factor C 99.6 3.7E-14 8E-19 152.6 21.0 207 188-433 11-247 (337)
83 PRK14969 DNA polymerase III su 99.6 2.4E-14 5.3E-19 162.9 20.2 210 187-433 11-242 (527)
84 PRK00411 cdc6 cell division co 99.6 6.2E-14 1.3E-18 154.4 22.8 224 190-435 28-282 (394)
85 PRK10865 protein disaggregatio 99.6 1E-14 2.2E-19 174.5 17.4 167 189-381 175-359 (857)
86 PLN03025 replication factor C 99.6 3.9E-14 8.4E-19 152.1 19.5 199 188-431 9-219 (319)
87 TIGR02397 dnaX_nterm DNA polym 99.6 4.5E-14 9.8E-19 153.2 19.9 203 188-433 10-240 (355)
88 PHA02544 44 clamp loader, smal 99.6 5.2E-14 1.1E-18 150.5 18.7 198 188-430 17-226 (316)
89 PRK08903 DnaA regulatory inact 99.6 1.5E-13 3.3E-18 140.1 21.1 203 186-433 12-224 (227)
90 PRK07940 DNA polymerase III su 99.6 3.1E-14 6.8E-19 156.2 17.1 192 190-409 3-216 (394)
91 PRK14086 dnaA chromosomal repl 99.6 6E-14 1.3E-18 159.4 19.7 222 187-437 283-517 (617)
92 PRK14957 DNA polymerase III su 99.6 7E-14 1.5E-18 158.5 20.1 203 187-432 11-241 (546)
93 PRK14959 DNA polymerase III su 99.6 7.4E-14 1.6E-18 159.3 20.0 203 187-432 11-241 (624)
94 PRK07133 DNA polymerase III su 99.6 9.9E-14 2.1E-18 160.4 20.7 209 187-432 13-240 (725)
95 CHL00095 clpC Clp protease ATP 99.6 4.7E-14 1E-18 168.8 18.6 201 189-416 176-402 (821)
96 PRK13341 recombination factor 99.6 6.5E-14 1.4E-18 163.8 19.2 208 188-435 24-247 (725)
97 PRK05896 DNA polymerase III su 99.6 9.9E-14 2.1E-18 157.5 20.0 209 187-432 11-241 (605)
98 KOG2004 Mitochondrial ATP-depe 99.6 5.7E-15 1.2E-19 165.1 9.6 182 173-377 392-597 (906)
99 PRK08084 DNA replication initi 99.6 2.9E-13 6.2E-18 139.1 21.3 207 186-432 16-233 (235)
100 PRK14965 DNA polymerase III su 99.6 9.8E-14 2.1E-18 159.6 19.7 203 186-431 10-240 (576)
101 KOG2028 ATPase related to the 99.6 5.1E-14 1.1E-18 147.1 15.5 209 188-434 134-367 (554)
102 PRK14953 DNA polymerase III su 99.6 1.7E-13 3.7E-18 154.4 20.6 209 187-432 11-241 (486)
103 PRK14970 DNA polymerase III su 99.6 1.5E-13 3.2E-18 150.3 19.6 210 187-433 12-231 (367)
104 TIGR03346 chaperone_ClpB ATP-d 99.6 9.7E-14 2.1E-18 166.6 19.8 200 190-415 171-396 (852)
105 PRK10787 DNA-binding ATP-depen 99.5 6.8E-14 1.5E-18 165.4 17.5 164 192-377 322-507 (784)
106 PRK07764 DNA polymerase III su 99.5 8.2E-14 1.8E-18 164.8 18.1 208 188-431 11-242 (824)
107 PRK14952 DNA polymerase III su 99.5 1.4E-13 3.1E-18 157.3 19.4 210 187-432 8-241 (584)
108 COG0466 Lon ATP-dependent Lon 99.5 3E-14 6.6E-19 160.3 13.4 220 192-432 323-581 (782)
109 PRK12422 chromosomal replicati 99.5 1.5E-13 3.2E-18 153.3 18.8 194 225-436 141-344 (445)
110 PRK05342 clpX ATP-dependent pr 99.5 1.6E-13 3.5E-18 151.3 18.8 181 190-373 68-322 (412)
111 PRK08451 DNA polymerase III su 99.5 2.9E-13 6.2E-18 152.8 20.5 201 188-431 10-238 (535)
112 PRK06305 DNA polymerase III su 99.5 3E-13 6.6E-18 151.3 20.4 208 188-432 13-243 (451)
113 PRK14955 DNA polymerase III su 99.5 2.2E-13 4.8E-18 150.5 19.0 212 188-432 12-254 (397)
114 PRK09111 DNA polymerase III su 99.5 2.8E-13 6E-18 155.7 20.3 208 189-433 21-255 (598)
115 PRK06647 DNA polymerase III su 99.5 2.8E-13 6E-18 154.9 20.2 209 187-432 11-241 (563)
116 PRK08727 hypothetical protein; 99.5 1.1E-12 2.4E-17 134.6 21.2 209 186-434 13-230 (233)
117 TIGR02903 spore_lon_C ATP-depe 99.5 1.4E-12 3E-17 151.2 24.4 217 188-434 150-429 (615)
118 PTZ00112 origin recognition co 99.5 6.7E-13 1.4E-17 152.8 21.2 215 192-436 755-1007(1164)
119 PRK14087 dnaA chromosomal repl 99.5 1E-12 2.3E-17 146.9 20.2 193 225-435 141-348 (450)
120 PRK13407 bchI magnesium chelat 99.5 1.9E-13 4.1E-18 146.7 13.5 220 187-436 3-307 (334)
121 PRK05642 DNA replication initi 99.5 2.6E-12 5.7E-17 131.9 21.3 180 225-432 45-232 (234)
122 PRK14954 DNA polymerase III su 99.5 1.1E-12 2.5E-17 150.9 20.3 213 187-432 11-254 (620)
123 PRK05201 hslU ATP-dependent pr 99.5 1.5E-13 3.3E-18 149.3 12.4 175 193-372 16-344 (443)
124 PRK14948 DNA polymerase III su 99.5 1.3E-12 2.8E-17 151.1 20.7 205 188-430 12-240 (620)
125 KOG0989 Replication factor C, 99.5 6.3E-13 1.4E-17 137.1 16.1 182 188-409 32-229 (346)
126 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.7E-17 136.6 18.4 191 225-437 21-259 (262)
127 COG2812 DnaX DNA polymerase II 99.5 4.8E-13 1E-17 149.4 16.1 209 186-431 10-240 (515)
128 COG1224 TIP49 DNA helicase TIP 99.5 1E-12 2.2E-17 137.5 17.1 129 285-435 292-432 (450)
129 PRK14950 DNA polymerase III su 99.5 1.6E-12 3.4E-17 150.2 20.6 209 187-432 11-242 (585)
130 CHL00081 chlI Mg-protoporyphyr 99.5 3.9E-13 8.4E-18 144.7 14.1 223 186-437 11-324 (350)
131 PRK00440 rfc replication facto 99.5 2.2E-12 4.9E-17 137.5 19.9 200 189-433 14-224 (319)
132 TIGR00390 hslU ATP-dependent p 99.5 2.2E-13 4.8E-18 147.9 11.7 175 193-372 13-342 (441)
133 TIGR00382 clpX endopeptidase C 99.5 1.7E-12 3.7E-17 142.6 18.2 179 193-374 78-329 (413)
134 PRK06620 hypothetical protein; 99.5 1.9E-12 4.1E-17 131.2 16.8 195 186-432 10-213 (214)
135 PF00308 Bac_DnaA: Bacterial d 99.4 1.3E-12 2.7E-17 133.0 14.8 199 187-414 3-215 (219)
136 COG1474 CDC6 Cdc6-related prot 99.4 2.8E-12 6E-17 139.6 18.3 218 193-435 18-265 (366)
137 PRK11034 clpA ATP-dependent Cl 99.4 2.6E-12 5.6E-17 151.2 18.4 165 193-378 459-668 (758)
138 TIGR02030 BchI-ChlI magnesium 99.4 1.5E-12 3.3E-17 140.0 14.4 219 190-437 2-311 (337)
139 PRK14971 DNA polymerase III su 99.4 8.3E-12 1.8E-16 144.4 20.9 208 188-432 13-243 (614)
140 TIGR02639 ClpA ATP-dependent C 99.4 5.8E-12 1.3E-16 149.3 18.6 163 192-378 454-664 (731)
141 PF05673 DUF815: Protein of un 99.4 7.5E-12 1.6E-16 127.1 16.0 192 185-409 20-243 (249)
142 COG0593 DnaA ATPase involved i 99.4 1.2E-11 2.6E-16 134.7 18.3 226 186-438 81-316 (408)
143 TIGR01650 PD_CobS cobaltochela 99.4 5.1E-12 1.1E-16 134.2 13.8 139 225-378 64-235 (327)
144 TIGR02442 Cob-chelat-sub cobal 99.4 6.6E-12 1.4E-16 146.3 14.9 216 190-436 2-305 (633)
145 PRK09087 hypothetical protein; 99.3 6.3E-11 1.4E-15 121.1 18.0 173 226-435 45-222 (226)
146 cd00009 AAA The AAA+ (ATPases 99.3 2.9E-11 6.2E-16 111.9 13.5 123 225-361 19-150 (151)
147 PF05621 TniB: Bacterial TniB 99.3 1E-10 2.3E-15 122.3 18.2 219 193-431 35-285 (302)
148 COG3829 RocR Transcriptional r 99.3 2.8E-11 6E-16 133.7 12.4 212 187-429 240-491 (560)
149 TIGR03345 VI_ClpV1 type VI sec 99.3 1.1E-10 2.4E-15 139.8 18.5 163 192-378 566-782 (852)
150 PRK09112 DNA polymerase III su 99.3 2.1E-10 4.5E-15 124.5 18.7 188 187-409 18-242 (351)
151 TIGR02329 propionate_PrpR prop 99.2 5.6E-11 1.2E-15 135.1 13.9 213 189-430 209-465 (526)
152 KOG1942 DNA helicase, TBP-inte 99.2 2.3E-10 4.9E-15 117.2 16.6 131 284-436 296-439 (456)
153 PRK15424 propionate catabolism 99.2 5.2E-11 1.1E-15 135.3 13.2 212 189-428 216-478 (538)
154 PRK07471 DNA polymerase III su 99.2 2.5E-10 5.4E-15 124.5 18.0 179 187-401 14-233 (365)
155 TIGR03015 pepcterm_ATPase puta 99.2 3.2E-10 6.9E-15 118.2 18.0 192 226-435 44-266 (269)
156 PHA02244 ATPase-like protein 99.2 3.5E-10 7.5E-15 121.7 18.2 125 225-365 119-263 (383)
157 KOG1969 DNA replication checkp 99.2 3.5E-10 7.6E-15 127.7 18.5 210 185-420 264-520 (877)
158 PRK05564 DNA polymerase III su 99.2 1.9E-10 4.2E-15 123.2 15.6 172 190-401 2-185 (313)
159 PRK13531 regulatory ATPase Rav 99.2 1.9E-10 4.1E-15 127.6 15.8 214 193-438 21-286 (498)
160 COG0714 MoxR-like ATPases [Gen 99.2 2.8E-10 6.2E-15 122.7 17.0 133 226-375 44-202 (329)
161 TIGR03346 chaperone_ClpB ATP-d 99.2 3.2E-10 6.9E-15 136.5 18.8 163 192-378 565-778 (852)
162 PF06068 TIP49: TIP49 C-termin 99.2 8.8E-11 1.9E-15 125.1 12.1 66 190-262 22-89 (398)
163 CHL00095 clpC Clp protease ATP 99.2 3.2E-10 6.9E-15 136.1 18.3 164 192-378 509-734 (821)
164 PRK10865 protein disaggregatio 99.2 3.6E-10 7.7E-15 135.8 18.3 167 191-378 567-781 (857)
165 COG2204 AtoC Response regulato 99.2 1.1E-10 2.4E-15 128.9 12.7 210 189-430 138-386 (464)
166 TIGR00368 Mg chelatase-related 99.2 2.1E-10 4.5E-15 129.6 15.1 214 189-433 189-497 (499)
167 COG0542 clpA ATP-binding subun 99.2 5.3E-10 1.1E-14 129.8 18.6 204 188-416 166-394 (786)
168 COG1221 PspF Transcriptional r 99.2 9.4E-11 2E-15 127.5 11.4 199 187-415 73-309 (403)
169 PRK11608 pspF phage shock prot 99.2 3.8E-10 8.2E-15 121.6 14.8 196 190-414 4-239 (326)
170 TIGR02031 BchD-ChlD magnesium 99.2 4.2E-10 9E-15 130.1 15.8 192 226-436 17-259 (589)
171 COG0542 clpA ATP-binding subun 99.2 2E-10 4.3E-15 133.2 12.8 161 192-379 491-708 (786)
172 smart00350 MCM minichromosome 99.1 4.7E-10 1E-14 127.8 15.3 191 225-435 236-504 (509)
173 TIGR00764 lon_rel lon-related 99.1 4.7E-10 1E-14 129.9 15.4 103 331-435 268-391 (608)
174 TIGR00678 holB DNA polymerase 99.1 6.5E-10 1.4E-14 110.1 14.2 144 223-398 12-183 (188)
175 COG3604 FhlA Transcriptional r 99.1 2.4E-10 5.2E-15 124.9 11.8 200 187-415 218-456 (550)
176 TIGR01817 nifA Nif-specific re 99.1 2.5E-10 5.4E-15 131.0 12.7 212 187-430 191-440 (534)
177 smart00382 AAA ATPases associa 99.1 2.5E-10 5.4E-15 104.4 10.1 126 225-363 2-147 (148)
178 TIGR02974 phageshock_pspF psp 99.1 6.2E-10 1.3E-14 120.0 14.5 203 194-427 1-242 (329)
179 COG2607 Predicted ATPase (AAA+ 99.1 4.1E-09 8.8E-14 105.8 18.9 193 186-409 54-275 (287)
180 COG0470 HolB ATPase involved i 99.1 9E-10 1.9E-14 117.6 15.1 147 192-370 1-175 (325)
181 PF07728 AAA_5: AAA domain (dy 99.1 1.2E-10 2.5E-15 109.5 7.1 113 227-354 1-139 (139)
182 PRK05022 anaerobic nitric oxid 99.1 5E-10 1.1E-14 127.7 13.5 199 190-416 185-421 (509)
183 PRK07399 DNA polymerase III su 99.1 1.1E-09 2.5E-14 117.1 15.4 183 190-409 2-223 (314)
184 PRK10820 DNA-binding transcrip 99.1 6E-10 1.3E-14 127.3 13.8 211 187-428 199-447 (520)
185 PRK11388 DNA-binding transcrip 99.1 6.1E-10 1.3E-14 130.5 14.1 214 188-432 321-568 (638)
186 PRK11331 5-methylcytosine-spec 99.1 1.1E-09 2.4E-14 120.8 14.2 141 191-362 174-357 (459)
187 PF01078 Mg_chelatase: Magnesi 99.1 1E-10 2.3E-15 116.5 5.3 45 191-249 2-46 (206)
188 COG1219 ClpX ATP-dependent pro 99.1 4.2E-10 9.1E-15 116.7 9.7 130 194-326 63-203 (408)
189 PRK04132 replication factor C 99.1 2.3E-09 4.9E-14 126.8 17.0 172 228-432 567-751 (846)
190 PRK15429 formate hydrogenlyase 99.1 2.1E-09 4.5E-14 127.0 16.4 200 188-415 372-609 (686)
191 PF00158 Sigma54_activat: Sigm 99.0 6E-10 1.3E-14 108.7 8.7 134 194-355 1-155 (168)
192 PRK08058 DNA polymerase III su 99.0 2.5E-09 5.5E-14 115.4 14.1 154 190-374 3-180 (329)
193 KOG0741 AAA+-type ATPase [Post 99.0 4.5E-09 9.9E-14 115.0 15.0 154 205-374 524-684 (744)
194 KOG0991 Replication factor C, 99.0 5.9E-09 1.3E-13 104.0 13.7 199 188-431 23-233 (333)
195 TIGR00602 rad24 checkpoint pro 99.0 6.8E-09 1.5E-13 119.9 16.5 218 188-432 80-352 (637)
196 PRK05707 DNA polymerase III su 99.0 3.7E-09 8E-14 113.8 13.0 135 222-376 19-178 (328)
197 smart00763 AAA_PrkA PrkA AAA d 99.0 5.9E-09 1.3E-13 112.2 14.5 83 190-279 48-143 (361)
198 COG1220 HslU ATP-dependent pro 99.0 3.9E-09 8.4E-14 110.3 12.3 84 285-373 251-346 (444)
199 PRK09862 putative ATP-dependen 99.0 1E-08 2.2E-13 115.7 16.1 211 189-433 188-490 (506)
200 KOG2680 DNA helicase TIP49, TB 99.0 1.1E-08 2.4E-13 105.2 14.8 130 285-436 289-430 (454)
201 COG1239 ChlI Mg-chelatase subu 99.0 7.2E-09 1.6E-13 112.1 13.9 161 187-377 12-233 (423)
202 COG0606 Predicted ATPase with 98.9 2.2E-09 4.7E-14 117.6 8.4 47 188-248 175-221 (490)
203 PF07724 AAA_2: AAA domain (Cd 98.9 3.1E-09 6.7E-14 104.1 7.8 111 226-342 4-131 (171)
204 KOG1514 Origin recognition com 98.9 6.2E-08 1.3E-12 109.8 18.5 195 227-437 424-657 (767)
205 TIGR02915 PEP_resp_reg putativ 98.9 9.7E-09 2.1E-13 115.1 12.3 208 190-428 137-382 (445)
206 PRK13765 ATP-dependent proteas 98.9 1.4E-08 3.1E-13 117.5 13.7 102 331-434 277-399 (637)
207 PF13177 DNA_pol3_delta2: DNA 98.9 1.1E-08 2.4E-13 99.2 10.3 133 196-362 1-160 (162)
208 KOG0745 Putative ATP-dependent 98.9 9.1E-09 2E-13 110.5 10.3 98 227-325 228-331 (564)
209 PRK08116 hypothetical protein; 98.9 1.4E-08 3E-13 106.5 11.4 123 225-365 114-251 (268)
210 PRK06964 DNA polymerase III su 98.9 1.6E-08 3.6E-13 109.1 12.1 134 222-375 18-203 (342)
211 PRK10923 glnG nitrogen regulat 98.8 2.8E-08 6E-13 112.3 14.5 212 190-432 136-385 (469)
212 PTZ00111 DNA replication licen 98.8 6.1E-08 1.3E-12 114.4 16.1 130 223-372 490-653 (915)
213 PRK11361 acetoacetate metaboli 98.8 4.9E-08 1.1E-12 109.7 14.8 211 190-431 141-389 (457)
214 PRK08769 DNA polymerase III su 98.8 1.4E-07 3.1E-12 101.0 16.8 156 222-404 23-206 (319)
215 PRK06871 DNA polymerase III su 98.8 1.2E-07 2.7E-12 101.7 15.1 134 222-375 21-178 (325)
216 KOG2227 Pre-initiation complex 98.8 3.1E-07 6.8E-12 100.1 17.9 224 192-438 150-418 (529)
217 PF07726 AAA_3: ATPase family 98.7 6.3E-09 1.4E-13 96.0 3.6 111 227-354 1-129 (131)
218 PRK07993 DNA polymerase III su 98.7 1.9E-07 4E-12 101.0 14.9 134 221-374 20-178 (334)
219 PF14532 Sigma54_activ_2: Sigm 98.7 1.9E-08 4.2E-13 94.7 6.4 105 195-339 1-108 (138)
220 PRK12377 putative replication 98.7 8.7E-08 1.9E-12 99.2 11.7 101 225-341 101-206 (248)
221 PRK07952 DNA replication prote 98.7 1.3E-07 2.7E-12 97.8 11.7 100 226-341 100-205 (244)
222 PRK15115 response regulator Gl 98.7 4.1E-07 8.9E-12 102.0 16.2 208 193-431 135-380 (444)
223 PRK08181 transposase; Validate 98.6 1.6E-07 3.4E-12 98.4 11.1 100 225-341 106-209 (269)
224 COG4178 ABC-type uncharacteriz 98.6 1.8E-08 4E-13 114.3 4.4 183 129-342 298-575 (604)
225 TIGR01818 ntrC nitrogen regula 98.6 2.2E-07 4.7E-12 104.7 12.8 211 191-432 133-381 (463)
226 PRK08699 DNA polymerase III su 98.6 3.5E-07 7.5E-12 98.5 13.7 133 222-374 18-183 (325)
227 PRK06090 DNA polymerase III su 98.6 2.9E-07 6.4E-12 98.5 12.9 134 221-374 21-178 (319)
228 PRK06526 transposase; Provisio 98.6 9.1E-08 2E-12 99.5 8.7 100 225-341 98-201 (254)
229 PRK13406 bchD magnesium chelat 98.6 2.8E-07 6.2E-12 106.1 12.6 188 226-436 26-251 (584)
230 KOG0990 Replication factor C, 98.6 5.4E-07 1.2E-11 94.2 12.4 185 187-412 36-234 (360)
231 PRK10365 transcriptional regul 98.5 1.1E-06 2.3E-11 98.4 15.3 208 193-431 140-385 (441)
232 PRK08939 primosomal protein Dn 98.5 3.6E-07 7.9E-12 97.6 9.6 101 224-341 155-261 (306)
233 PRK06835 DNA replication prote 98.5 7.5E-07 1.6E-11 96.0 11.6 99 226-340 184-288 (329)
234 KOG2035 Replication factor C, 98.5 3.2E-06 7E-11 86.8 14.9 177 189-398 10-220 (351)
235 PF01637 Arch_ATPase: Archaeal 98.5 6.8E-07 1.5E-11 90.0 10.0 162 225-400 20-228 (234)
236 PF13173 AAA_14: AAA domain 98.5 8.6E-07 1.9E-11 82.3 9.8 119 226-367 3-126 (128)
237 PF03215 Rad17: Rad17 cell cyc 98.4 3.4E-06 7.4E-11 96.0 16.0 204 188-416 15-269 (519)
238 COG1484 DnaC DNA replication p 98.4 8.8E-07 1.9E-11 92.2 9.9 88 197-296 88-179 (254)
239 PRK09183 transposase/IS protei 98.4 6.8E-07 1.5E-11 93.4 9.1 101 225-341 102-206 (259)
240 PF01695 IstB_IS21: IstB-like 98.4 3.9E-07 8.4E-12 89.9 6.2 101 224-341 46-150 (178)
241 COG3283 TyrR Transcriptional r 98.4 2.4E-06 5.3E-11 90.3 12.3 210 187-429 199-443 (511)
242 COG3284 AcoR Transcriptional a 98.4 7.2E-07 1.6E-11 100.8 7.6 186 226-433 337-555 (606)
243 PF13401 AAA_22: AAA domain; P 98.3 2.1E-06 4.5E-11 79.2 9.4 98 225-338 4-125 (131)
244 KOG1051 Chaperone HSP104 and r 98.3 2.4E-06 5.3E-11 101.0 12.1 128 192-340 562-710 (898)
245 PRK06921 hypothetical protein; 98.3 1.4E-06 3E-11 91.4 7.3 68 225-295 117-188 (266)
246 PF12775 AAA_7: P-loop contain 98.3 2E-06 4.2E-11 90.5 8.2 165 188-378 6-195 (272)
247 cd01120 RecA-like_NTPases RecA 98.3 5.7E-06 1.2E-10 78.3 10.4 110 228-342 2-138 (165)
248 KOG1970 Checkpoint RAD17-RFC c 98.2 3.7E-05 8E-10 85.6 17.3 174 226-415 111-320 (634)
249 COG1116 TauB ABC-type nitrate/ 98.2 1.7E-06 3.7E-11 88.2 6.5 29 220-248 22-52 (248)
250 PF06480 FtsH_ext: FtsH Extrac 98.2 3.1E-06 6.7E-11 75.6 7.5 102 4-118 1-108 (110)
251 PF12774 AAA_6: Hydrolytic ATP 98.2 1.1E-05 2.4E-10 82.8 12.1 125 225-371 32-175 (231)
252 KOG0478 DNA replication licens 98.2 2.9E-05 6.2E-10 88.2 15.9 128 224-366 461-616 (804)
253 PF03969 AFG1_ATPase: AFG1-lik 98.2 4.5E-06 9.7E-11 91.1 9.1 138 222-387 59-204 (362)
254 COG3267 ExeA Type II secretory 98.2 3.9E-05 8.6E-10 78.4 15.0 183 228-429 54-267 (269)
255 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.8E-10 75.5 11.8 142 227-378 2-165 (166)
256 COG1241 MCM2 Predicted ATPase 98.2 6E-06 1.3E-10 95.6 9.6 190 226-436 320-593 (682)
257 PLN03210 Resistant to P. syrin 98.1 2.1E-05 4.6E-10 98.4 14.8 180 188-402 180-391 (1153)
258 PRK05917 DNA polymerase III su 98.1 2E-05 4.3E-10 83.2 11.6 122 222-363 16-154 (290)
259 PF00493 MCM: MCM2/3/5 family 98.1 2.7E-06 5.8E-11 92.1 5.1 219 193-434 25-325 (331)
260 TIGR02237 recomb_radB DNA repa 98.1 1.5E-05 3.2E-10 80.2 9.3 112 224-339 11-148 (209)
261 PF00931 NB-ARC: NB-ARC domain 98.1 6.6E-05 1.4E-09 78.8 14.7 159 225-407 19-202 (287)
262 KOG0480 DNA replication licens 98.0 5.3E-05 1.2E-09 85.4 13.4 223 191-435 344-643 (764)
263 PRK07276 DNA polymerase III su 98.0 0.00014 3E-09 77.1 15.8 129 222-373 21-172 (290)
264 PF00910 RNA_helicase: RNA hel 98.0 1.6E-05 3.5E-10 71.7 7.2 23 228-250 1-23 (107)
265 PRK05818 DNA polymerase III su 98.0 3.3E-05 7.1E-10 80.1 9.9 121 223-363 5-147 (261)
266 PRK07132 DNA polymerase III su 98.0 0.00012 2.7E-09 77.9 14.1 125 223-374 16-160 (299)
267 cd01124 KaiC KaiC is a circadi 97.9 8E-05 1.7E-09 73.0 11.2 102 228-341 2-140 (187)
268 PF13191 AAA_16: AAA ATPase do 97.8 3.6E-05 7.9E-10 75.0 7.4 59 194-261 2-63 (185)
269 cd03216 ABC_Carb_Monos_I This 97.8 5.3E-05 1.1E-09 73.4 7.5 103 226-343 27-144 (163)
270 COG1485 Predicted ATPase [Gene 97.8 0.00011 2.4E-09 78.4 9.9 164 195-387 28-207 (367)
271 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 6.3E-05 1.4E-09 77.7 7.9 58 271-343 144-201 (254)
272 TIGR01618 phage_P_loop phage n 97.8 9.4E-05 2E-09 75.3 8.8 73 224-298 11-95 (220)
273 KOG0482 DNA replication licens 97.7 6.7E-05 1.4E-09 82.6 7.8 165 193-372 343-535 (721)
274 cd00983 recA RecA is a bacter 97.7 0.00015 3.2E-09 77.9 10.5 114 225-338 55-189 (325)
275 TIGR02012 tigrfam_recA protein 97.7 0.00015 3.3E-09 77.8 10.4 118 222-339 52-190 (321)
276 COG1136 SalX ABC-type antimicr 97.7 0.0001 2.2E-09 75.0 8.6 70 271-361 147-216 (226)
277 COG1618 Predicted nucleotide k 97.7 0.00011 2.5E-09 70.2 8.3 26 224-249 4-29 (179)
278 PRK09361 radB DNA repair and r 97.7 0.00014 3.1E-09 73.9 9.5 116 221-339 19-160 (225)
279 PRK08118 topology modulation p 97.7 6.3E-05 1.4E-09 73.4 6.5 34 227-260 3-36 (167)
280 TIGR02688 conserved hypothetic 97.7 0.0006 1.3E-08 75.2 14.6 187 225-437 209-435 (449)
281 COG4619 ABC-type uncharacteriz 97.7 0.00015 3.3E-09 69.8 8.7 23 226-248 30-52 (223)
282 cd03283 ABC_MutS-like MutS-lik 97.7 0.00021 4.5E-09 71.8 10.2 102 226-344 26-151 (199)
283 COG5271 MDN1 AAA ATPase contai 97.7 0.00011 2.3E-09 89.4 9.1 137 224-379 1542-1706(4600)
284 cd03238 ABC_UvrA The excision 97.7 0.00024 5.1E-09 70.0 9.7 119 221-361 15-162 (176)
285 TIGR02858 spore_III_AA stage I 97.7 0.00012 2.6E-09 77.0 7.9 94 226-341 112-229 (270)
286 COG2884 FtsE Predicted ATPase 97.6 0.00016 3.5E-09 71.0 8.2 59 272-345 143-201 (223)
287 COG1127 Ttg2A ABC-type transpo 97.6 0.00016 3.4E-09 73.5 8.1 58 272-343 151-208 (263)
288 PRK11823 DNA repair protein Ra 97.6 0.00015 3.2E-09 81.6 8.6 77 222-298 77-170 (446)
289 cd01121 Sms Sms (bacterial rad 97.6 0.00014 3E-09 79.8 8.1 77 222-298 79-172 (372)
290 COG1120 FepC ABC-type cobalami 97.6 0.00016 3.5E-09 75.0 8.0 57 271-341 143-199 (258)
291 PF13207 AAA_17: AAA domain; P 97.6 4.8E-05 1E-09 69.3 3.5 30 228-257 2-31 (121)
292 PRK08533 flagellar accessory p 97.6 0.00051 1.1E-08 70.6 11.3 75 223-297 22-130 (230)
293 PRK00131 aroK shikimate kinase 97.6 0.00023 5.1E-09 68.7 8.4 34 224-257 3-36 (175)
294 KOG2170 ATPase of the AAA+ sup 97.6 0.0026 5.6E-08 66.7 16.0 95 193-296 83-190 (344)
295 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00031 6.7E-09 66.7 8.7 98 226-343 27-129 (144)
296 cd03246 ABCC_Protease_Secretio 97.6 0.00024 5.2E-09 69.4 8.2 101 227-342 30-157 (173)
297 cd01394 radB RadB. The archaea 97.6 0.00042 9.2E-09 70.1 10.2 115 223-340 17-157 (218)
298 COG1373 Predicted ATPase (AAA+ 97.6 0.00058 1.3E-08 75.8 12.0 123 227-370 39-161 (398)
299 PRK15455 PrkA family serine pr 97.6 0.00012 2.6E-09 83.1 6.6 65 188-258 72-137 (644)
300 COG1126 GlnQ ABC-type polar am 97.6 0.00014 3.1E-09 72.8 6.4 56 270-340 140-195 (240)
301 PHA00729 NTP-binding motif con 97.5 0.00016 3.4E-09 73.7 6.7 25 226-250 18-42 (226)
302 cd01131 PilT Pilus retraction 97.5 0.00033 7.1E-09 70.2 8.8 67 227-293 3-83 (198)
303 PRK07261 topology modulation p 97.5 0.00017 3.8E-09 70.5 6.7 34 228-261 3-36 (171)
304 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00025 5.4E-09 69.9 7.5 103 226-343 26-134 (177)
305 PF05707 Zot: Zonular occluden 97.5 8.8E-05 1.9E-09 74.0 4.3 123 228-363 3-146 (193)
306 cd03228 ABCC_MRP_Like The MRP 97.5 0.0003 6.5E-09 68.6 7.9 102 226-344 29-158 (171)
307 COG2274 SunT ABC-type bacterio 97.5 0.00014 3.1E-09 85.8 6.6 69 270-361 613-681 (709)
308 KOG1968 Replication factor C, 97.5 0.00021 4.6E-09 85.4 7.8 202 190-414 318-535 (871)
309 PRK14722 flhF flagellar biosyn 97.5 0.00049 1.1E-08 75.4 9.8 110 224-349 136-267 (374)
310 PF13671 AAA_33: AAA domain; P 97.5 0.00038 8.3E-09 65.1 7.8 37 228-266 2-38 (143)
311 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00069 1.5E-08 65.9 9.7 99 226-342 28-149 (166)
312 PRK06067 flagellar accessory p 97.5 0.00048 1E-08 70.7 9.1 38 221-258 21-61 (234)
313 cd03247 ABCC_cytochrome_bd The 97.4 0.00069 1.5E-08 66.5 9.8 103 226-344 29-160 (178)
314 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00052 1.1E-08 67.1 8.8 102 226-342 27-156 (173)
315 cd01128 rho_factor Transcripti 97.4 0.0013 2.9E-08 68.3 12.2 112 226-338 17-164 (249)
316 KOG1051 Chaperone HSP104 and r 97.4 0.00079 1.7E-08 80.2 11.7 162 191-378 185-365 (898)
317 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00055 1.2E-08 65.6 8.5 103 226-344 26-143 (157)
318 PF07693 KAP_NTPase: KAP famil 97.4 0.0019 4.1E-08 69.2 13.5 27 223-249 18-44 (325)
319 PRK00771 signal recognition pa 97.4 0.0029 6.3E-08 70.9 15.2 192 223-435 93-332 (437)
320 PRK09376 rho transcription ter 97.4 0.00091 2E-08 73.2 10.8 73 228-300 172-272 (416)
321 COG3842 PotA ABC-type spermidi 97.4 0.00015 3.3E-09 78.4 4.9 28 220-247 24-53 (352)
322 KOG2543 Origin recognition com 97.4 0.0019 4E-08 69.7 12.8 162 192-377 6-194 (438)
323 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0013 2.9E-08 67.7 11.2 39 221-259 17-58 (237)
324 PF14516 AAA_35: AAA-like doma 97.3 0.0088 1.9E-07 64.8 17.7 170 226-410 32-242 (331)
325 COG4650 RtcR Sigma54-dependent 97.3 0.00087 1.9E-08 69.6 9.3 75 219-297 202-295 (531)
326 cd03214 ABC_Iron-Siderophores_ 97.3 0.00081 1.8E-08 66.1 8.6 104 226-343 26-160 (180)
327 COG4618 ArpD ABC-type protease 97.3 0.00052 1.1E-08 76.3 7.8 85 271-378 477-565 (580)
328 PF00437 T2SE: Type II/IV secr 97.3 0.00037 8.1E-09 73.0 6.5 98 186-293 98-206 (270)
329 COG1117 PstB ABC-type phosphat 97.3 0.001 2.3E-08 66.6 9.1 54 271-339 154-207 (253)
330 PRK06762 hypothetical protein; 97.3 0.00081 1.7E-08 65.0 8.3 40 225-264 2-41 (166)
331 smart00534 MUTSac ATPase domai 97.3 0.0013 2.8E-08 65.2 9.8 100 228-342 2-123 (185)
332 KOG0477 DNA replication licens 97.3 0.0009 1.9E-08 75.6 9.4 31 226-256 483-513 (854)
333 TIGR02782 TrbB_P P-type conjug 97.3 0.00035 7.6E-09 74.6 6.1 69 225-293 132-213 (299)
334 KOG0058 Peptide exporter, ABC 97.3 0.00044 9.5E-09 79.8 7.2 42 270-322 608-649 (716)
335 KOG2228 Origin recognition com 97.3 0.0019 4.2E-08 68.6 11.3 161 193-377 25-220 (408)
336 cd01393 recA_like RecA is a b 97.3 0.00072 1.6E-08 68.6 8.1 117 221-339 15-167 (226)
337 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00081 1.8E-08 68.7 8.5 117 221-339 15-168 (235)
338 COG3854 SpoIIIAA ncharacterize 97.3 0.0016 3.5E-08 65.8 10.0 70 226-295 138-229 (308)
339 cd03215 ABC_Carb_Monos_II This 97.3 0.00081 1.8E-08 66.2 8.0 101 226-342 27-165 (182)
340 PRK12339 2-phosphoglycerate ki 97.3 0.0042 9E-08 62.4 13.2 29 225-253 3-31 (197)
341 cd00544 CobU Adenosylcobinamid 97.3 0.0018 3.9E-08 63.4 10.0 96 228-325 2-114 (169)
342 KOG2383 Predicted ATPase [Gene 97.2 0.0049 1.1E-07 66.9 13.9 160 222-412 111-297 (467)
343 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0024 5.2E-08 64.8 11.2 112 225-348 29-161 (213)
344 cd03229 ABC_Class3 This class 97.2 0.00085 1.8E-08 65.9 7.6 105 226-344 27-164 (178)
345 TIGR01420 pilT_fam pilus retra 97.2 0.00074 1.6E-08 73.6 7.7 68 226-293 123-204 (343)
346 PRK09354 recA recombinase A; P 97.2 0.0012 2.7E-08 71.5 9.2 113 225-337 60-193 (349)
347 COG1125 OpuBA ABC-type proline 97.2 0.00027 5.8E-09 72.4 3.7 32 216-247 16-49 (309)
348 PF03266 NTPase_1: NTPase; In 97.2 0.00088 1.9E-08 65.5 7.3 27 227-253 1-30 (168)
349 PRK05800 cobU adenosylcobinami 97.2 0.0031 6.6E-08 61.8 11.0 95 227-325 3-114 (170)
350 PF06745 KaiC: KaiC; InterPro 97.2 0.0019 4.2E-08 65.7 10.0 108 221-339 15-159 (226)
351 cd01130 VirB11-like_ATPase Typ 97.2 0.00058 1.3E-08 67.7 6.0 69 225-293 25-109 (186)
352 PRK12723 flagellar biosynthesi 97.2 0.0024 5.3E-08 70.4 11.4 110 224-348 173-306 (388)
353 TIGR00416 sms DNA repair prote 97.2 0.001 2.2E-08 75.1 8.5 77 222-298 91-184 (454)
354 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0029 6.2E-08 66.4 11.4 67 227-293 82-158 (264)
355 cd00984 DnaB_C DnaB helicase C 97.2 0.0018 4E-08 66.4 9.7 38 221-258 9-50 (242)
356 PRK14974 cell division protein 97.2 0.0029 6.3E-08 68.5 11.6 73 224-296 139-234 (336)
357 PRK04296 thymidine kinase; Pro 97.2 0.0015 3.3E-08 65.0 8.7 70 227-296 4-90 (190)
358 TIGR02868 CydC thiol reductant 97.2 0.00087 1.9E-08 77.1 8.0 54 271-340 475-528 (529)
359 COG4133 CcmA ABC-type transpor 97.2 0.0018 3.9E-08 63.7 8.7 54 282-350 146-199 (209)
360 cd03232 ABC_PDR_domain2 The pl 97.2 0.0017 3.7E-08 64.6 8.9 102 226-342 34-169 (192)
361 PRK10536 hypothetical protein; 97.2 0.003 6.6E-08 65.6 10.9 45 190-248 53-97 (262)
362 cd03243 ABC_MutS_homologs The 97.2 0.0015 3.3E-08 65.5 8.6 22 226-247 30-51 (202)
363 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0024 5.1E-08 63.7 9.9 102 226-342 36-172 (194)
364 COG1122 CbiO ABC-type cobalt t 97.1 0.00092 2E-08 68.9 7.0 56 274-343 146-201 (235)
365 PRK13948 shikimate kinase; Pro 97.1 0.0015 3.2E-08 64.8 8.2 34 224-257 9-42 (182)
366 PRK13947 shikimate kinase; Pro 97.1 0.00043 9.4E-09 67.1 4.3 31 227-257 3-33 (171)
367 PRK11174 cysteine/glutathione 97.1 0.00088 1.9E-08 78.1 7.6 68 271-361 490-557 (588)
368 cd01122 GP4d_helicase GP4d_hel 97.1 0.0019 4.1E-08 67.6 9.4 38 221-258 26-67 (271)
369 PF05272 VirE: Virulence-assoc 97.1 0.0031 6.7E-08 63.3 10.4 124 201-361 34-168 (198)
370 PRK03839 putative kinase; Prov 97.1 0.00039 8.4E-09 68.3 3.9 30 228-257 3-32 (180)
371 cd00464 SK Shikimate kinase (S 97.1 0.00083 1.8E-08 63.6 6.0 39 227-267 1-39 (154)
372 cd00046 DEXDc DEAD-like helica 97.1 0.0025 5.4E-08 57.7 8.9 24 226-249 1-24 (144)
373 COG1119 ModF ABC-type molybden 97.1 0.0027 5.9E-08 64.9 9.7 62 274-349 179-241 (257)
374 KOG0481 DNA replication licens 97.1 0.0028 6.1E-08 70.3 10.5 140 226-375 365-526 (729)
375 PRK11889 flhF flagellar biosyn 97.1 0.0057 1.2E-07 67.2 12.8 69 225-293 241-329 (436)
376 COG1131 CcmA ABC-type multidru 97.1 0.0012 2.5E-08 70.4 7.5 57 274-344 144-200 (293)
377 COG1118 CysA ABC-type sulfate/ 97.1 0.00068 1.5E-08 71.2 5.5 58 271-342 142-199 (345)
378 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0028 6E-08 63.5 9.8 20 227-246 30-49 (200)
379 PRK00625 shikimate kinase; Pro 97.1 0.00048 1E-08 67.6 4.2 31 227-257 2-32 (173)
380 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.0052 1.1E-07 62.6 11.9 38 221-258 16-56 (229)
381 PRK13540 cytochrome c biogenes 97.1 0.0022 4.7E-08 64.1 9.0 55 276-345 137-191 (200)
382 COG0703 AroK Shikimate kinase 97.1 0.0014 3E-08 63.9 7.2 32 226-257 3-34 (172)
383 PF00448 SRP54: SRP54-type pro 97.1 0.0013 2.8E-08 65.9 7.3 108 225-345 1-131 (196)
384 PRK13539 cytochrome c biogenes 97.1 0.0018 4E-08 65.1 8.4 56 276-346 137-192 (207)
385 COG1124 DppF ABC-type dipeptid 97.1 0.0016 3.4E-08 66.5 7.6 57 271-341 146-202 (252)
386 PF13604 AAA_30: AAA domain; P 97.1 0.00091 2E-08 67.0 5.9 98 226-340 19-132 (196)
387 PRK13541 cytochrome c biogenes 97.0 0.0031 6.7E-08 62.8 9.6 25 225-249 26-50 (195)
388 PRK05973 replicative DNA helic 97.0 0.0075 1.6E-07 62.2 12.5 39 221-259 60-101 (237)
389 cd03292 ABC_FtsE_transporter F 97.0 0.0016 3.6E-08 65.5 7.6 53 276-343 146-198 (214)
390 cd03269 ABC_putative_ATPase Th 97.0 0.0016 3.6E-08 65.4 7.5 53 276-343 138-190 (210)
391 cd03226 ABC_cobalt_CbiO_domain 97.0 0.0018 3.8E-08 65.0 7.7 54 275-343 135-188 (205)
392 PRK11176 lipid transporter ATP 97.0 0.0008 1.7E-08 78.3 6.0 67 272-361 486-552 (582)
393 PRK09519 recA DNA recombinatio 97.0 0.003 6.5E-08 74.9 10.7 117 222-338 57-194 (790)
394 TIGR00960 3a0501s02 Type II (G 97.0 0.0018 3.8E-08 65.5 7.8 53 276-343 148-200 (216)
395 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0044 9.5E-08 64.8 10.9 38 221-258 32-72 (259)
396 TIGR02857 CydD thiol reductant 97.0 0.0015 3.3E-08 75.1 8.2 33 217-249 338-372 (529)
397 PF06309 Torsin: Torsin; Inte 97.0 0.0028 6.1E-08 58.7 8.2 52 192-249 25-77 (127)
398 PRK13543 cytochrome c biogenes 97.0 0.0022 4.8E-08 64.8 8.5 57 274-345 145-201 (214)
399 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.0018 3.9E-08 65.7 7.8 54 276-343 141-194 (220)
400 cd03217 ABC_FeS_Assembly ABC-t 97.0 0.0037 8.1E-08 62.5 9.9 103 225-342 26-165 (200)
401 cd03262 ABC_HisP_GlnQ_permease 97.0 0.002 4.2E-08 64.9 7.9 24 226-249 27-50 (213)
402 TIGR02525 plasmid_TraJ plasmid 97.0 0.0031 6.8E-08 69.2 10.1 68 226-293 150-234 (372)
403 TIGR03796 NHPM_micro_ABC1 NHPM 97.0 0.0012 2.5E-08 78.9 7.3 66 271-361 620-685 (710)
404 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0018 3.9E-08 65.5 7.6 53 277-343 151-203 (218)
405 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00059 1.3E-08 66.9 4.0 33 228-262 2-34 (183)
406 PRK13764 ATPase; Provisional 97.0 0.0013 2.7E-08 76.2 7.1 68 225-293 257-333 (602)
407 PRK13538 cytochrome c biogenes 97.0 0.0025 5.3E-08 64.0 8.5 56 276-346 139-194 (204)
408 cd03301 ABC_MalK_N The N-termi 97.0 0.0018 3.8E-08 65.3 7.5 24 226-249 27-50 (213)
409 cd03218 ABC_YhbG The ABC trans 97.0 0.0019 4.2E-08 65.9 7.9 53 276-343 143-195 (232)
410 PRK13946 shikimate kinase; Pro 97.0 0.0016 3.4E-08 64.4 6.9 35 224-258 9-43 (184)
411 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0035 7.5E-08 60.7 9.1 23 225-247 21-43 (162)
412 PLN02200 adenylate kinase fami 97.0 0.00082 1.8E-08 69.2 5.0 41 221-263 39-79 (234)
413 TIGR01188 drrA daunorubicin re 97.0 0.0019 4.2E-08 68.9 8.0 55 274-343 132-186 (302)
414 COG5245 DYN1 Dynein, heavy cha 97.0 0.0036 7.7E-08 76.5 10.7 142 222-379 1491-1661(3164)
415 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.0025 5.5E-08 65.3 8.5 55 276-344 142-196 (236)
416 PRK13833 conjugal transfer pro 97.0 0.0014 3E-08 70.6 6.8 69 225-293 144-224 (323)
417 PRK13894 conjugal transfer ATP 97.0 0.0015 3.1E-08 70.5 6.9 69 225-293 148-228 (319)
418 KOG3347 Predicted nucleotide k 97.0 0.00064 1.4E-08 64.3 3.6 33 225-257 7-39 (176)
419 PRK13949 shikimate kinase; Pro 97.0 0.00069 1.5E-08 66.2 4.0 32 226-257 2-33 (169)
420 TIGR01166 cbiO cobalt transpor 97.0 0.0034 7.3E-08 62.1 9.0 24 226-249 19-42 (190)
421 cd03266 ABC_NatA_sodium_export 97.0 0.0017 3.7E-08 65.7 7.0 53 276-343 146-198 (218)
422 PRK12724 flagellar biosynthesi 97.0 0.0097 2.1E-07 66.0 13.3 114 225-348 223-353 (432)
423 TIGR03797 NHPM_micro_ABC2 NHPM 97.0 0.0016 3.4E-08 77.4 7.8 65 271-360 593-657 (686)
424 PRK04328 hypothetical protein; 97.0 0.0067 1.5E-07 63.0 11.5 38 221-258 19-59 (249)
425 COG3839 MalK ABC-type sugar tr 97.0 0.0021 4.6E-08 69.3 7.9 27 222-248 24-52 (338)
426 TIGR02673 FtsE cell division A 96.9 0.0022 4.8E-08 64.6 7.6 53 276-343 147-199 (214)
427 cd03259 ABC_Carb_Solutes_like 96.9 0.002 4.4E-08 64.9 7.4 23 227-249 28-50 (213)
428 PRK13900 type IV secretion sys 96.9 0.0013 2.8E-08 71.2 6.3 70 224-293 159-244 (332)
429 PRK06217 hypothetical protein; 96.9 0.00076 1.7E-08 66.5 4.1 31 227-257 3-33 (183)
430 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0076 1.6E-07 61.3 11.5 109 221-339 12-152 (224)
431 PRK14532 adenylate kinase; Pro 96.9 0.00077 1.7E-08 66.6 4.1 36 227-264 2-37 (188)
432 cd03225 ABC_cobalt_CbiO_domain 96.9 0.0025 5.4E-08 64.1 7.8 52 277-343 145-196 (211)
433 cd00227 CPT Chloramphenicol (C 96.9 0.00086 1.9E-08 65.6 4.3 38 226-263 3-40 (175)
434 COG4088 Predicted nucleotide k 96.9 0.0028 6.1E-08 63.1 7.8 22 228-249 4-25 (261)
435 PRK13537 nodulation ABC transp 96.9 0.0023 5E-08 68.6 7.9 56 274-344 146-201 (306)
436 cd02020 CMPK Cytidine monophos 96.9 0.0008 1.7E-08 63.1 3.8 30 228-257 2-31 (147)
437 PRK14531 adenylate kinase; Pro 96.9 0.00096 2.1E-08 65.9 4.4 31 226-256 3-33 (183)
438 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.9 0.0024 5.2E-08 65.2 7.4 24 226-249 49-72 (224)
439 PRK04301 radA DNA repair and r 96.9 0.0045 9.7E-08 66.7 9.8 117 221-339 98-251 (317)
440 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.3E-08 68.2 4.7 34 224-257 5-38 (229)
441 cd03258 ABC_MetN_methionine_tr 96.9 0.0027 5.8E-08 64.9 7.7 24 226-249 32-55 (233)
442 TIGR03740 galliderm_ABC gallid 96.9 0.0023 5E-08 65.0 7.1 54 276-344 134-187 (223)
443 PRK11650 ugpC glycerol-3-phosp 96.9 0.0028 6.1E-08 69.4 8.2 55 274-342 142-196 (356)
444 TIGR02238 recomb_DMC1 meiotic 96.9 0.0042 9.1E-08 66.8 9.4 115 222-338 93-243 (313)
445 cd03233 ABC_PDR_domain1 The pl 96.9 0.0049 1.1E-07 61.8 9.4 103 226-341 34-180 (202)
446 PRK04841 transcriptional regul 96.9 0.013 2.8E-07 71.6 14.9 151 226-400 33-219 (903)
447 cd03265 ABC_DrrA DrrA is the A 96.9 0.0031 6.6E-08 64.0 7.9 54 276-343 141-194 (220)
448 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0056 1.2E-07 63.4 10.0 34 228-261 2-38 (249)
449 PRK09452 potA putrescine/sperm 96.9 0.0017 3.6E-08 71.6 6.3 56 274-343 152-207 (375)
450 cd03231 ABC_CcmA_heme_exporter 96.9 0.0043 9.4E-08 62.1 8.9 57 274-345 133-189 (201)
451 COG1102 Cmk Cytidylate kinase 96.9 0.00085 1.8E-08 64.4 3.5 28 228-255 3-30 (179)
452 TIGR02236 recomb_radA DNA repa 96.9 0.0059 1.3E-07 65.4 10.4 117 221-339 91-245 (310)
453 PRK09544 znuC high-affinity zi 96.9 0.0033 7.2E-08 65.4 8.2 56 274-343 128-183 (251)
454 TIGR03410 urea_trans_UrtE urea 96.8 0.003 6.4E-08 64.5 7.7 53 277-343 142-194 (230)
455 cd03268 ABC_BcrA_bacitracin_re 96.8 0.003 6.4E-08 63.4 7.6 24 226-249 27-50 (208)
456 COG4586 ABC-type uncharacteriz 96.8 0.0019 4.1E-08 66.9 6.1 33 217-249 40-74 (325)
457 cd03263 ABC_subfamily_A The AB 96.8 0.0031 6.7E-08 63.8 7.8 23 227-249 30-52 (220)
458 TIGR02788 VirB11 P-type DNA tr 96.8 0.0021 4.5E-08 69.0 6.7 72 222-293 141-227 (308)
459 PF04665 Pox_A32: Poxvirus A32 96.8 0.0088 1.9E-07 61.7 11.0 133 223-375 11-169 (241)
460 cd02021 GntK Gluconate kinase 96.8 0.001 2.2E-08 63.1 3.8 32 228-261 2-33 (150)
461 PRK13851 type IV secretion sys 96.8 0.0015 3.3E-08 70.9 5.7 72 222-293 159-245 (344)
462 cd01428 ADK Adenylate kinase ( 96.8 0.001 2.2E-08 65.7 3.9 33 228-262 2-34 (194)
463 TIGR01189 ccmA heme ABC export 96.8 0.0053 1.2E-07 61.2 9.1 24 226-249 27-50 (198)
464 PRK10908 cell division protein 96.8 0.0034 7.4E-08 63.7 7.8 24 226-249 29-52 (222)
465 cd02027 APSK Adenosine 5'-phos 96.8 0.0037 8.1E-08 59.7 7.6 35 228-262 2-39 (149)
466 COG2805 PilT Tfp pilus assembl 96.8 0.0072 1.6E-07 63.5 10.1 113 225-366 124-251 (353)
467 PRK11432 fbpC ferric transport 96.8 0.0037 8E-08 68.3 8.4 24 226-249 33-56 (351)
468 PF01745 IPT: Isopentenyl tran 96.8 0.0018 3.9E-08 65.0 5.3 132 228-378 4-141 (233)
469 COG4181 Predicted ABC-type tra 96.8 0.0025 5.3E-08 61.9 6.0 69 272-361 152-220 (228)
470 PRK11247 ssuB aliphatic sulfon 96.8 0.0033 7.2E-08 65.6 7.6 24 226-249 39-62 (257)
471 PRK11248 tauB taurine transpor 96.8 0.0031 6.7E-08 65.7 7.4 24 226-249 28-51 (255)
472 PRK10790 putative multidrug tr 96.8 0.0022 4.7E-08 74.9 6.9 68 271-361 481-548 (592)
473 PRK11607 potG putrescine trans 96.8 0.0035 7.6E-08 69.1 8.2 24 226-249 46-69 (377)
474 TIGR03375 type_I_sec_LssB type 96.8 0.002 4.3E-08 76.7 6.6 67 271-360 606-672 (694)
475 TIGR02211 LolD_lipo_ex lipopro 96.8 0.004 8.8E-08 63.0 8.0 54 276-343 151-204 (221)
476 PHA02774 E1; Provisional 96.8 0.0046 9.9E-08 70.7 9.0 33 226-258 435-468 (613)
477 TIGR03265 PhnT2 putative 2-ami 96.8 0.0037 7.9E-08 68.4 8.1 56 274-343 142-197 (353)
478 PRK10867 signal recognition pa 96.8 0.024 5.1E-07 63.6 14.6 71 223-293 98-192 (433)
479 TIGR01313 therm_gnt_kin carboh 96.8 0.0011 2.3E-08 63.9 3.5 27 228-254 1-27 (163)
480 COG4525 TauB ABC-type taurine 96.8 0.0038 8.2E-08 61.8 7.2 24 225-248 31-54 (259)
481 PRK13638 cbiO cobalt transport 96.8 0.0029 6.4E-08 66.4 7.1 54 276-344 146-199 (271)
482 PRK13657 cyclic beta-1,2-gluca 96.8 0.0026 5.7E-08 74.2 7.3 67 272-361 477-543 (588)
483 TIGR03608 L_ocin_972_ABC putat 96.8 0.0055 1.2E-07 61.3 8.7 24 226-249 25-48 (206)
484 PRK06547 hypothetical protein; 96.8 0.0015 3.4E-08 64.0 4.6 35 223-257 13-47 (172)
485 cd03295 ABC_OpuCA_Osmoprotecti 96.8 0.0034 7.4E-08 64.6 7.3 24 226-249 28-51 (242)
486 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.8E-08 66.6 4.2 30 227-256 5-34 (215)
487 PRK13546 teichoic acids export 96.8 0.0054 1.2E-07 64.4 8.9 30 220-249 43-74 (264)
488 cd03237 ABC_RNaseL_inhibitor_d 96.7 0.0043 9.4E-08 64.3 8.1 23 227-249 27-49 (246)
489 cd03369 ABCC_NFT1 Domain 2 of 96.7 0.0043 9.3E-08 62.3 7.8 54 274-343 133-186 (207)
490 PLN03187 meiotic recombination 96.7 0.0045 9.7E-08 67.3 8.4 115 222-338 123-273 (344)
491 TIGR01288 nodI ATP-binding ABC 96.7 0.0038 8.2E-08 66.8 7.8 53 276-343 145-197 (303)
492 cd03264 ABC_drug_resistance_li 96.7 0.0047 1E-07 62.1 8.1 52 276-343 140-191 (211)
493 PRK13695 putative NTPase; Prov 96.7 0.012 2.5E-07 57.6 10.6 22 228-249 3-24 (174)
494 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0086 1.9E-07 60.4 9.9 22 226-247 30-51 (204)
495 cd03294 ABC_Pro_Gly_Bertaine T 96.7 0.0039 8.4E-08 65.5 7.7 32 218-249 41-74 (269)
496 cd03224 ABC_TM1139_LivF_branch 96.7 0.0042 9.1E-08 62.9 7.7 24 226-249 27-50 (222)
497 PRK10247 putative ABC transpor 96.7 0.0059 1.3E-07 62.2 8.8 24 226-249 34-57 (225)
498 PRK11153 metN DL-methionine tr 96.7 0.0036 7.8E-08 68.2 7.5 56 274-343 148-203 (343)
499 cd03267 ABC_NatA_like Similar 96.7 0.0045 9.8E-08 63.6 7.9 53 277-343 164-216 (236)
500 PRK11000 maltose/maltodextrin 96.7 0.0039 8.4E-08 68.6 7.8 56 274-343 141-196 (369)
No 1
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-116 Score=987.27 Aligned_cols=599 Identities=57% Similarity=0.896 Sum_probs=548.0
Q ss_pred cccchhHHHHHhcCCCCccEEEEec-CeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeCCchhHHHH
Q 005738 25 SQISFQEFKNKLLEPGLVDRIVVTN-KSVAKVFVKSTPRSTNETNDDFTQSPVNGSPDKRNLSQCKYYFNIGSVESFEEK 103 (680)
Q Consensus 25 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (680)
++|+|++|+++|+++|.|+++.+.+ ...+.+++....+.+. .....+++++++++.|+++
T Consensus 164 ~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~-------------------~~~~~~~~~i~~v~~F~~k 224 (774)
T KOG0731|consen 164 QEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGD-------------------RLIQKVWFNIRSVDNFERK 224 (774)
T ss_pred eeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccc-------------------cceeeEEEEecccchHHHH
Confidence 5899999999999999999999997 5566777665432100 1234578999999999999
Q ss_pred HHHHHHHcCCCCCCccceeeecchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccccccceeeecc
Q 005738 104 LEEAQEALGIDPHDYIPVTYENEVNWYQELMRFAPTALLFGALWFMGRKMQSGLGVGGPGGRGGRGIFNIGKATITKMDM 183 (680)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (680)
|..++.++++....++|+.|...+.|...+..++|++++++..+|+++++.+ ++.+++|++.+.+.|..+++. ++++.
T Consensus 225 l~~a~~~l~~~~~~~~pV~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~-~~~~~~gg~~g~~~f~~~ks~-~k~~~ 302 (774)
T KOG0731|consen 225 LDEAQRNLGIDTVVRVPVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEG-MGKGGPGGGLGPRLFGVSKSY-KKFKN 302 (774)
T ss_pred HHHHHHHhCCCceeEeeeEEeecchhhhhhhhhhHHHHHHHhHheeeeeccc-ccccCCccccCcceeeeccce-eeecc
Confidence 9999999999999999999987788888888889989999999999998876 433333344444566667776 66766
Q ss_pred cCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
...++++|+||+|++++|++|+|+|++|++|++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+++|.+++++|++|..|+.++||||||||||+++.+|+.....+.++++++++||||.+||||....+|+|+++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999996334567899999999999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
||+||+|||||||+|++++|+..+|.+|++.|+++.+++.+ +.++..+|.+|+||+|+||+|+||+|++.|+|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e-~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDE-DVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcc-hhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999998733 22345699999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccCccccCCHH
Q 005738 424 TMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKE 503 (680)
Q Consensus 424 t~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~~~~~~tk~ 503 (680)
+..||+.|++|+++|++++...++.++++.+||||||||+++|+++|.+|+.||||+| |. ++||++|.|.+.+++|++
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-Gq-alG~a~~~P~~~~l~sk~ 619 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQ-ALGYAQYLPTDDYLLSKE 619 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CC-ccceEEECCcccccccHH
Confidence 9999999999999999999999999999999999999999999999999999999999 76 999999999999999999
Q ss_pred HHHHhhHhhhhhHHHHHHHcC-CcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCC-ccccCCCCChhHHHHHH
Q 005738 504 QLFDMTCMTLGGRAAEQVLLG-KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDD-TFEMTKPYSSKTGAIID 581 (680)
Q Consensus 504 ~l~~~i~v~LgGraAEel~fg-~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~-~~~~~~~~s~~~~~~id 581 (680)
+|++||||+||||||||++|| ++||||++||++||++|+.||++|||++++|+++++.... .+...+|||..+++.||
T Consensus 620 ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 620 QLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 999999999999999999997 8999999999999999999999999999999999965443 45668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCCCCCCCCchHHhhhc
Q 005738 582 NEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPFKHSEPTNYDRFKKG 647 (680)
Q Consensus 582 ~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~~~~~~~~~~~~~~~ 647 (680)
.||+++++.||++|.++|++|++.++.||+.||+||+|+++|+.++++++|+...++..|.+++.+
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~~~~ 765 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQKIG 765 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999998778899988877
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-111 Score=941.78 Aligned_cols=585 Identities=48% Similarity=0.795 Sum_probs=513.5
Q ss_pred ccccHHHHHHHHHHHHhcCCccccchhHHHHHhcCCCCccEEEEecCe-EEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 005738 4 IGFFPFPILCSLIVFLTCFTFSQISFQEFKNKLLEPGLVDRIVVTNKS-VAKVFVKSTPRSTNETNDDFTQSPVNGSPDK 82 (680)
Q Consensus 4 ~~~~~~~~ll~~~~~l~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (680)
|..++++++.++..|. ......++|++|.. ++..+.|+++.+.+.. .+..+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~-~~~~~~v~~~~~~~~~~~v~~~~~~~~--------------------- 59 (596)
T COG0465 3 WLLIAIVLIFLFNLFT-NSSSKQVTYSQFIQ-LVSGGKVSSVSIKGDSKTVNLKLKDGS--------------------- 59 (596)
T ss_pred hhHHHHHHHHHHHHhh-hcccccccHHHHHH-HHhcCCceEEEEcCCceEEEEEecCCc---------------------
Confidence 5555543333333333 33337899999986 5899999999998653 3334433210
Q ss_pred CCCCcceEEEEeCCchhHHHHHHHHHHHcCCCCCCccceeeecchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 005738 83 RNLSQCKYYFNIGSVESFEEKLEEAQEALGIDPHDYIPVTYENEVNWYQELMRFAPTALLFGALWFMGRKMQSGLGVGGP 162 (680)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (680)
...++.+.. .+..++...+...+++.....| .....|+..+.+++|++++++++||+++|+..++
T Consensus 60 ----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g----- 124 (596)
T COG0465 60 ----KNTVYLPKG---VNDPNLVSFLDSNNITESGFIP---EDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGG----- 124 (596)
T ss_pred ----ceEEeecCC---cccHHHHHHHHhcCCcccccCC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----
Confidence 111122221 2334566666777764443333 3334566667789999999998888877664331
Q ss_pred CCCCCCccccccccceeeecccCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHH
Q 005738 163 GGRGGRGIFNIGKATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLA 242 (680)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LA 242 (680)
+| ++.|++++++++.+... ..+++|+|++|.+++|+++.|+|++|++|.+|..+|.++|+|+||+||||||||+||
T Consensus 125 --~g-~~~~~~gkskak~~~~~-~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLA 200 (596)
T COG0465 125 --GG-GGAFSFGKSKAKLYLED-QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLA 200 (596)
T ss_pred --CC-CcccCCChHHHHHhccc-ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHH
Confidence 11 12899999999887664 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh
Q 005738 243 KATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE 322 (680)
Q Consensus 243 ralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~ 322 (680)
||+|+++++||+++|+|+|+++|+|.+++++|++|.+|++++||||||||||+++++|+.+ .++++++++|++||||.+
T Consensus 201 kAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvE 279 (596)
T COG0465 201 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVE 279 (596)
T ss_pred HHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999876 678899999999999999
Q ss_pred hcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHH
Q 005738 323 MDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGA 402 (680)
Q Consensus 323 md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sga 402 (680)
||||..+.+|+||++||+|+.|||||+|||||||+|.++.||..+|++|++.|+++.+++.+++. ..+|+.|+||+|+
T Consensus 280 mDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl--~~iAr~tpGfsGA 357 (596)
T COG0465 280 MDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL--KKIARGTPGFSGA 357 (596)
T ss_pred hccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH--HHHhhhCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988876 6799999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeC
Q 005738 403 DIANVCNEAALIAARNESAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPR 482 (680)
Q Consensus 403 dL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~pr 482 (680)
|++|++|+|++.|+|+++..|++.||++|+++++.|++++++.+++.+++.+||||+|||++++.++++++++|+||+||
T Consensus 358 dL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPr 437 (596)
T COG0465 358 DLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPR 437 (596)
T ss_pred hHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeecccCc-cccCCHHHHHHhhHhhhhhHHHHHHHcC-CcccccccHHHHHHHHHHHhhhhcccCCCccceecc
Q 005738 483 GTAALGFAQYVPNE-NLLMTKEQLFDMTCMTLGGRAAEQVLLG-KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFP 560 (680)
Q Consensus 483 g~~~~G~~~~~~~~-~~~~tk~~l~~~i~v~LgGraAEel~fg-~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~ 560 (680)
|. ++|||++.|++ .+++||++++++|+++||||||||++|| ++||||+||+++||++|+.||++||||+++|++.|.
T Consensus 438 G~-alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~ 516 (596)
T COG0465 438 GR-ALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYE 516 (596)
T ss_pred ch-hhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceehh
Confidence 95 99999999986 8999999999999999999999999999 999999999999999999999999999999999998
Q ss_pred CCCCccc----cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCCC
Q 005738 561 QRDDTFE----MTKPYSSKTGAIIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPFK 634 (680)
Q Consensus 561 ~~~~~~~----~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~~ 634 (680)
..++.|. ..+.||++|++.||.||++++++||++|++||.+|++.++.+++.|+++|||+++++.+|+..++.+
T Consensus 517 ~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 517 QVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred hcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhcccCC
Confidence 8655332 2456999999999999999999999999999999999999999999999999999999999877554
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-109 Score=879.53 Aligned_cols=441 Identities=47% Similarity=0.796 Sum_probs=420.9
Q ss_pred eecccCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 005738 180 KMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGS 259 (680)
Q Consensus 180 ~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s 259 (680)
..++....+++|+||-|++++|++|.|+|++|++|++|.++|.+.|+||||+||||||||+||||+|+|+++||++.+++
T Consensus 292 ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 292 EVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred ccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 34455567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 260 DFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 260 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
+|-++|+|++++++|++|+.|+.++||||||||||++|.+|... ...+..+++||||.+||||..+.+||||++||
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN 447 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccC
Confidence 99999999999999999999999999999999999999988532 22378899999999999999999999999999
Q ss_pred CCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Q 005738 340 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 340 ~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~ 419 (680)
.|+.||+||.||||||++|.||.||...|.+||+.|++++.++.++|. ..||+-|+||+||||+||+|.||+.|+..+
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~--~iiARGT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP--KIIARGTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH--hHhccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999888886 789999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccC-ccc
Q 005738 420 SAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENL 498 (680)
Q Consensus 420 ~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~-~~~ 498 (680)
...|++.|++.|-+++++|.+++...++++.++++||||+|||||+...+.+.|++|+||.|||. ++|++.++|+ |++
T Consensus 526 a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~-sLG~t~~LPe~D~~ 604 (752)
T KOG0734|consen 526 AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGP-SLGHTSQLPEKDRY 604 (752)
T ss_pred cccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCc-cccceeecCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999998 9999999998 789
Q ss_pred cCCHHHHHHhhHhhhhhHHHHHHHcC--CcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCCccccCCCCChhH
Q 005738 499 LMTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDTFEMTKPYSSKT 576 (680)
Q Consensus 499 ~~tk~~l~~~i~v~LgGraAEel~fg--~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~~~~~~~~~s~~~ 576 (680)
..||.||++++.||||||+|||++|| .+||||++||++||++|++||+.||||+++|++++....+ ..+.+.+|
T Consensus 605 ~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~----~~s~~~~t 680 (752)
T KOG0734|consen 605 SITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN----SSSLSPRT 680 (752)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC----CCCCCchh
Confidence 99999999999999999999999999 5999999999999999999999999999999999876554 34678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCC
Q 005738 577 GAIIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGER 631 (680)
Q Consensus 577 ~~~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~ 631 (680)
+..||.||+++|+++|+||+.||+.|...+++||++||++|||+++||++++...
T Consensus 681 ~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 681 QELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999544
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.8e-95 Score=828.45 Aligned_cols=569 Identities=41% Similarity=0.677 Sum_probs=477.1
Q ss_pred cccchhHHHHHhcCCCCccEEEEecCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeCCchhHHHHH
Q 005738 25 SQISFQEFKNKLLEPGLVDRIVVTNKSVAKVFVKSTPRSTNETNDDFTQSPVNGSPDKRNLSQCKYYFNIGSVESFEEKL 104 (680)
Q Consensus 25 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (680)
++++|++|++ +++.|+|++|.+.++.+.... .......+ .....|+..++.. ...|
T Consensus 50 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~~~~~~~---~~~~ 105 (638)
T CHL00176 50 SRMTYGRFLE-YLDMGWIKKVDLYDNGRTAIV-EASSPELG-------------------NRPQRIRVELPVG---ASEL 105 (638)
T ss_pred ceecHHHHHH-HHHcCCeeEEEEecCceEEEE-eeccccCC-------------------CcceeEEEeCCCC---CHHH
Confidence 5799999996 689999999999876543221 11100000 0001133333311 2334
Q ss_pred HHHHHHcCCCCCCccceeeecchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccccccceeeecc
Q 005738 105 EEAQEALGIDPHDYIPVTYENEVNWYQELMRF-APTALLFGALWFMGRKMQSGLGVGGPGGRGGRGIFNIGKATITKMDM 183 (680)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (680)
...+.+.++......+ .....|+..+..+ +|+++++++++|+.+++..+. +++..++++++++.+....
T Consensus 106 ~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 175 (638)
T CHL00176 106 IQKLKEANIDFDAHPP---VLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKG-------GPGQNLMNFGKSKARFQME 175 (638)
T ss_pred HHHHHHcCCcEEecCC---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCcccccccchhHHHhhcc
Confidence 4444456765432211 1123466666554 687777777776655543221 1112467888887655433
Q ss_pred cCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
....++|+||+|++++|+++.++++++++++.|+.+|.+.|+|+||+||||||||++|+++|+++++||+.+++++|.+
T Consensus 176 -~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 -ADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred -cCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
++.|.+.++++.+|..|+.++||||||||||+++..|+.+ ..+.+++.++++++||.+||++..+.+++||++||+++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG-IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC-CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 9999999999999999999999999999999999877543 345677888999999999999988889999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
+|++++||||||+++.+++|+.++|.+||+.|+++..+..+. ++..+|..|+||+|+||+++|++|++.|+++++..|
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~--~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~I 411 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDV--SLELIARRTPGFSGADLANLLNEAAILTARRKKATI 411 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999986555444 458899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccC-ccccCCH
Q 005738 424 TMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLMTK 502 (680)
Q Consensus 424 t~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~-~~~~~tk 502 (680)
+.+||+.|+++++.|++++. ..++.+++++||||+||||+++++++.+++++|||+|||. ++||+++.|. +.+++||
T Consensus 412 t~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~-~~G~~~~~p~~~~~~~t~ 489 (638)
T CHL00176 412 TMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQ-AKGLTWFTPEEDQSLVSR 489 (638)
T ss_pred CHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCC-CCCceEecCCcccccccH
Confidence 99999999999999987654 5677889999999999999999999999999999999996 8999999996 5789999
Q ss_pred HHHHHhhHhhhhhHHHHHHHcC--CcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCC--cc-----ccCCCCC
Q 005738 503 EQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDD--TF-----EMTKPYS 573 (680)
Q Consensus 503 ~~l~~~i~v~LgGraAEel~fg--~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~--~~-----~~~~~~s 573 (680)
++|+++|+++|||||||+++|| ++||||+|||++||++|++||++||||+ +|++++...++ .+ ...+.||
T Consensus 490 ~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s 568 (638)
T CHL00176 490 SQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYS 568 (638)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcC
Confidence 9999999999999999999999 5999999999999999999999999995 99999865432 12 2346799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCCC
Q 005738 574 SKTGAIIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPFK 634 (680)
Q Consensus 574 ~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~~ 634 (680)
+++++.||.||+++|++||++|++||++||+.|++||++|+++|+|+++||++|++..+..
T Consensus 569 ~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~ 629 (638)
T CHL00176 569 EEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTIL 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999876543
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.1e-91 Score=810.32 Aligned_cols=561 Identities=40% Similarity=0.727 Sum_probs=478.4
Q ss_pred cccchhHHHHHhcCCCCccEEEEecCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeCCchhHHHHH
Q 005738 25 SQISFQEFKNKLLEPGLVDRIVVTNKSVAKVFVKSTPRSTNETNDDFTQSPVNGSPDKRNLSQCKYYFNIGSVESFEEKL 104 (680)
Q Consensus 25 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (680)
+.++|++|.+. ..+|.|.++.+..+.+ +...+.+ . .|....+.. ...+
T Consensus 30 ~~~~~~~~~~~-~~~~~v~Ev~~~~~tI-K~~~~e~--------------------------~-~~~~~~~~~---~~~l 77 (644)
T PRK10733 30 RKVDYSTFLQE-VNQDQVREARINGREI-NVTKKDS--------------------------N-RYTTYIPVN---DPKL 77 (644)
T ss_pred ccCCHHHHHHH-HHcCCeEEEEEeCCEE-EEEEcCC--------------------------c-eEEEeCCCC---CHHH
Confidence 68999999875 7999999998876543 2221110 0 011111100 1222
Q ss_pred HHHHHHcCCCCCCccceeeecchhHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccccccceeeecc
Q 005738 105 EEAQEALGIDPHDYIPVTYENEVNWYQ-ELMRFAPTALLFGALWFMGRKMQSGLGVGGPGGRGGRGIFNIGKATITKMDM 183 (680)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (680)
...+.+.++...... .....|.. .+..++|+++++++++++.++|++|+ +.+++.+++........
T Consensus 78 ~~~l~~~~v~~~~~~----~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~---------~~~l~af~~~~~~~~~~ 144 (644)
T PRK10733 78 LDNLLTKNVKVVGEP----PEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGG---------GKGAMSFGKSKARMLTE 144 (644)
T ss_pred HHHHHHcCCeEEecC----cccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---------CceeEEeccccccccCc
Confidence 222333444322111 11122333 33456778888888999988886531 23467777776665554
Q ss_pred cCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
.....+|+|+.|.+.+++++.+++++++++..|..++..+|+|+||+||||||||++|+++|+++++||+.++++++.+
T Consensus 145 -~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 -DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred -hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.++|.+...++.+|..++..+||||||||+|+++.+|+.+ ..+++.+..+++++||.+||++..+.+++||+|||+|+.
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~-~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC-CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 9999999999999999999999999999999999887643 345567788999999999999998899999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
||++++||||||+++.+++|+.++|.+||+.|+++.++..+.+. ..++..|.||||+||.++|++|+..|+++++..|
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~--~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i 380 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA--AIIARGTPGFSGADLANLVNEAALFAARGNKRVV 380 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH--HHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999887766654 7899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccC-ccccCCH
Q 005738 424 TMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLMTK 502 (680)
Q Consensus 424 t~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~-~~~~~tk 502 (680)
+..||+.|++++..|++++...+++.+++.+||||+||||++|++++.+++++|||+|||. ++||+++.|. +.+..||
T Consensus 381 ~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~-~~g~~~~~~~~~~~~~~~ 459 (644)
T PRK10733 381 SMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGR-ALGVTFFLPEGDAISASR 459 (644)
T ss_pred cHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCC-CcceeEECCCcccccccH
Confidence 9999999999999998877777888999999999999999999999999999999999997 8999999997 4567899
Q ss_pred HHHHHhhHhhhhhHHHHHHHcC--CcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCCc------cccCCCCCh
Q 005738 503 EQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDT------FEMTKPYSS 574 (680)
Q Consensus 503 ~~l~~~i~v~LgGraAEel~fg--~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~~------~~~~~~~s~ 574 (680)
++|+++|+++|||||||+++|| ++||||+|||++||+||++||++||||+++|++.|...+.. +...++||+
T Consensus 460 ~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~ 539 (644)
T PRK10733 460 QKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSD 539 (644)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCH
Confidence 9999999999999999999998 69999999999999999999999999999999999754432 123578999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCCCC
Q 005738 575 KTGAIIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPFKH 635 (680)
Q Consensus 575 ~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~~~ 635 (680)
+|++.||+||+++|++||++|++||++||+.|++||++|+|+|+|+++||++|+...+..+
T Consensus 540 ~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~~~ 600 (644)
T PRK10733 540 ETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRP 600 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998765443
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.3e-86 Score=744.37 Aligned_cols=486 Identities=54% Similarity=0.906 Sum_probs=440.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccccccceeeecccCCCcccccccccchHHHHHHHHH
Q 005738 129 WYQELMRFAP-TALLFGALWFMGRKMQSGLGVGGPGGRGGRGIFNIGKATITKMDMNAKDKVFFKDVAGCDEAKQEIMEF 207 (680)
Q Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~ 207 (680)
|...+.+++| ++++.++|+|+.+++.+| +++.+.+++++++.... +.+.++|+||+|++++|+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~di~g~~~~k~~l~~~ 70 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----------GGRAFSFGKSKAKLLNE-EKPKVTFKDVAGIDEAKEELMEI 70 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----------CCCCcCCCCCccccccC-CCCCCCHHHhCCHHHHHHHHHHH
Confidence 4444444544 666777777777777543 12456778888887765 46899999999999999999999
Q ss_pred HHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeE
Q 005738 208 VHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSI 287 (680)
Q Consensus 208 v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~I 287 (680)
+.++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.+.|.+.+.++.+|+.|+.++|||
T Consensus 71 ~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 71 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred HHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHH
Q 005738 288 VFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 367 (680)
Q Consensus 288 LfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~e 367 (680)
|||||||.++.+++.+ .++.+++..+++++||.+||++..+.+++||+|||+|+.|||+++||||||+.|.++.|+.++
T Consensus 151 l~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred EEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 9999999999887543 334567778999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccccccchhhc
Q 005738 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGGLEKKNKVIS 447 (680)
Q Consensus 368 R~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~~~l~ 447 (680)
|.+|++.++++..+..+.+ +..++..+.||+|+||.++|++|+..|.++++..|+.+||..|++++..|++.....++
T Consensus 230 R~~il~~~l~~~~~~~~~~--l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~ 307 (495)
T TIGR01241 230 REEILKVHAKNKKLAPDVD--LKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVIS 307 (495)
T ss_pred HHHHHHHHHhcCCCCcchh--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccccccccccc
Confidence 9999999999876654444 57899999999999999999999999999999999999999999999998877777788
Q ss_pred cccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccCc-cccCCHHHHHHhhHhhhhhHHHHHHHcCCc
Q 005738 448 KLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNE-NLLMTKEQLFDMTCMTLGGRAAEQVLLGKI 526 (680)
Q Consensus 448 ~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~~-~~~~tk~~l~~~i~v~LgGraAEel~fg~~ 526 (680)
+.+++++||||+||||++|++++..++.++||.|||. .+||+++.|.+ .+..|+++++++|+|+|||||||+++||++
T Consensus 308 ~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~ 386 (495)
T TIGR01241 308 EKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQ-ALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEV 386 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCC-ccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999997 89999998875 678999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCC------ccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005738 527 STGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDD------TFEMTKPYSSKTGAIIDNEVREWVGKAYDHTVKLIE 600 (680)
Q Consensus 527 stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~------~~~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~ 600 (680)
|+||++||++||++|+.||.+||||+++|++++....+ .+...++||+.++..+|.+|+++|++||++|++||+
T Consensus 387 s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~ 466 (495)
T TIGR01241 387 TTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILT 466 (495)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976432 123457899999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHccccCHHHHHHHHc
Q 005738 601 EHREHVAQIAEELLEKEVLHQDDLVRVLG 629 (680)
Q Consensus 601 ~~r~~l~~la~~Lleke~l~~~ei~~il~ 629 (680)
+||++|++||++|+++|+|+++||++|++
T Consensus 467 ~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 467 ENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 99999999999999999999999999985
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-59 Score=481.57 Aligned_cols=254 Identities=47% Similarity=0.800 Sum_probs=244.5
Q ss_pred ccCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 183 MNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 183 ~~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
..+.+.++|+||.|+++++++++|.|+. |++|+.|..+|+.+|+|||||||||||||+||||+|++.++.|+.+.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4467899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 262 MEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
+.+|+|++++.+|++|+.|+.++||||||||||+++.+|..++ ++++.+.++++.+||.+||||.+..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 9999999999999999999999999999999999999997654 457889999999999999999999999999999999
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESA 421 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~ 421 (680)
+.|||||+|||||||.|+||+|+.+.|.+||+.|.++.++..++++ +.||+.+.|+|||||+++|.||.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~--e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL--ELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH--HHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999999999988886 89999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 005738 422 QITMQHFEAAIDRVIGGL 439 (680)
Q Consensus 422 ~It~~d~~~Al~~v~~g~ 439 (680)
.||++||..|+++++...
T Consensus 379 ~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred eecHHHHHHHHHHHHhcc
Confidence 999999999999998653
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.7e-56 Score=534.06 Aligned_cols=317 Identities=21% Similarity=0.289 Sum_probs=272.4
Q ss_pred hHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh------------------------------
Q 005738 216 KYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF------------------------------ 265 (680)
Q Consensus 216 ~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~------------------------------ 265 (680)
.+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 44678999999999999999999999999999999999999999998643
Q ss_pred -----------c--cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---CC
Q 005738 266 -----------V--GVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---TT 329 (680)
Q Consensus 266 -----------~--g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---~~ 329 (680)
+ +.+..+++.+|+.|++++||||||||||+++.+. ....++++|+.+||+.. ..
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCCC
Confidence 1 2223458999999999999999999999996541 22346899999999863 45
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHh--hcccCCCCcchhHHHHHhhCCCCCHHHHHHH
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYL--KKLKLDNEPSFYSQRLAALTPGFAGADIANV 407 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l--~~~~l~~~~d~~l~~la~~t~G~sgadL~~l 407 (680)
.+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++ ++..+..+. .+++.+|+.|+|||||||++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~-vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKM-FHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCccc-ccHHHHHHhCCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999988654 444444332 235889999999999999999
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEee-----C
Q 005738 408 CNEAALIAARNESAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVP-----R 482 (680)
Q Consensus 408 v~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~p-----r 482 (680)
|+||++.|+++++..|+.+++..|++|+++|++... .+..++ .+++||+|||||++++.+.+|+++|||.| +
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~--~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r 1926 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQV--RSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCK 1926 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc--cCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCcccc
Confidence 999999999999999999999999999999987543 333333 37999999999999999999999999964 3
Q ss_pred CCCccceeecccCccccCCHHHHHHhhHhhhhhHHHHHHHcCCcccccccHHHHHHHHHHHhhhhcccCCC-----ccce
Q 005738 483 GTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDK-----VGLL 557 (680)
Q Consensus 483 g~~~~G~~~~~~~~~~~~tk~~l~~~i~v~LgGraAEel~fg~~stGa~~DL~~AT~lA~~mv~~~Gms~~-----~g~~ 557 (680)
++.++||+++.|.+ +.++|.+++.+|++||||||||+++|+..+ .|+.||+.|||+++ .|++
T Consensus 1927 ~~~~yl~~wyle~~-~~mkk~tiL~~Il~cLAGraAedlwf~~~~------------~~~n~It~yg~vEnD~~La~glL 1993 (2281)
T CHL00206 1927 EGDSYLYKWYFELG-TSMKKLTILLYLLSCSAGSVAQDLWSLPGP------------DEKNGITSYGLVENDSDLVHGLL 1993 (2281)
T ss_pred CcccceeEeecCCc-ccCCHHHHHHHHHHHhhhhhhhhhccCcch------------hhhcCcccccchhhhhHHhHhHH
Confidence 45578999999977 889999999999999999999999997665 57899999999998 5665
Q ss_pred ec
Q 005738 558 SF 559 (680)
Q Consensus 558 ~~ 559 (680)
.+
T Consensus 1994 e~ 1995 (2281)
T CHL00206 1994 EV 1995 (2281)
T ss_pred Hh
Confidence 53
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-50 Score=441.73 Aligned_cols=247 Identities=45% Similarity=0.766 Sum_probs=233.2
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
+.++++|+||+|++++|.+|++.|.+ +++|+.|.++|+.+|+|||||||||||||++|||+|++++.+|+++.+.++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 56899999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|+|++++.+|++|++|+..+|||||+||||+++..|+.+ ......+++++||++|||+....+|+|||+||+|+.
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 9999999999999999999999999999999999998632 125567899999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc--CC
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE--SA 421 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~--~~ 421 (680)
||+||+||||||+.|+||+||.+.|.+||+.++++.++..++++ +.||..|.|||||||.++|++|++.|.++. ..
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl--~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~ 660 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL--EELAQATEGYSGAEIVAVCQEAALLALRESIEAT 660 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH--HHHHHHhccCChHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999888775 899999999999999999999999999885 45
Q ss_pred cccHHHHHHHHHHHhc
Q 005738 422 QITMQHFEAAIDRVIG 437 (680)
Q Consensus 422 ~It~~d~~~Al~~v~~ 437 (680)
.|+.+||++|+..+..
T Consensus 661 ~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 661 EITWQHFEEALKAVRP 676 (693)
T ss_pred cccHHHHHHHHHhhcc
Confidence 7999999999987543
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-48 Score=422.77 Aligned_cols=249 Identities=39% Similarity=0.672 Sum_probs=227.9
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
.-++|+|+||.|+++++.+|...+-+ +++|+.|+.+|+..|.|||||||||||||+||||+|++++..|+++.+.++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 45799999999999999999987766 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|+|+++..+|.+|.+|+.++|||||+||+|+|.++|+.+ ......+++||||.+|||...+.+|.||+|||+|+.
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 9999999999999999999999999999999999999753 255567899999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhh--cccCCCCcchhHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK--KLKLDNEPSFYSQRLAALTP--GFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~~~~d~~l~~la~~t~--G~sgadL~~lv~eAa~~a~r~~ 419 (680)
+|||++||||||+.++|++|+.++|.+||+.+.+ +..++.+++ ++.||+.+. |||||||+.||++|.+.|.++.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd--l~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD--LDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC--HHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 555555555 589999887 9999999999999999998762
Q ss_pred ----------------CCcccHHHHHHHHHHHhccc
Q 005738 420 ----------------SAQITMQHFEAAIDRVIGGL 439 (680)
Q Consensus 420 ----------------~~~It~~d~~~Al~~v~~g~ 439 (680)
...+++.||++|+.++....
T Consensus 738 ~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 11367889999999875543
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-46 Score=367.69 Aligned_cols=258 Identities=41% Similarity=0.686 Sum_probs=242.8
Q ss_pred cceeeecccCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 176 ATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 176 ~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
+....+.+.+++.+++.||.|++-.|+++++.++. |.+.+.|+.+|+.+|+|+|+|||||||||+||+|+|+.....|+
T Consensus 139 ssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 139 SSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred ccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 44455556778999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred EeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEE
Q 005738 255 SMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVV 334 (680)
Q Consensus 255 ~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViV 334 (680)
.+.+|+|+.+|+|++...+|++|+.|++++|+||||||||++..+|-.. ..+.+.+.++++..||.+||||....+|-|
T Consensus 219 rvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtgadrevqril~ellnqmdgfdq~~nvkv 297 (408)
T KOG0727|consen 219 RVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTGADREVQRILIELLNQMDGFDQTTNVKV 297 (408)
T ss_pred eeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-cccccHHHHHHHHHHHHhccCcCcccceEE
Confidence 9999999999999999999999999999999999999999999988644 346678899999999999999999999999
Q ss_pred EeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 335 LAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 335 IaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
|.+||+.+.|||||+||||+||.|+||+||..+++-+|.....+..++.++|+ +.+..+-...||+||..+|++|.+.
T Consensus 298 imatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl--e~~v~rpdkis~adi~aicqeagm~ 375 (408)
T KOG0727|consen 298 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL--EDLVARPDKISGADINAICQEAGML 375 (408)
T ss_pred EEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH--HHHhcCccccchhhHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999888875 7888889999999999999999999
Q ss_pred HHHhcCCcccHHHHHHHHHHHh
Q 005738 415 AARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~~v~ 436 (680)
|.|.++-.|...||++|...++
T Consensus 376 avr~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 376 AVRENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred HHHhcceeeeHHHHHHHHHhhc
Confidence 9999999999999999998764
No 12
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-46 Score=373.19 Aligned_cols=260 Identities=42% Similarity=0.742 Sum_probs=244.5
Q ss_pred eeecccCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 179 TKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 179 ~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
.....++++.+++.||.|+.+.++.|+++|+. |-+|++|-.+|+.+|+|+|||||||||||++|||+|+..+.-|+.+-
T Consensus 164 tmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 164 TMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred eEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeeh
Confidence 34445678999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 258 GSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 258 ~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
+|+++.+|+|+++..+|++|+.|+....||||+||||+++..|-.++ .+++.+.++++..|+.++|||.+++++-|+.+
T Consensus 244 gselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 244 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 99999999999999999999999999999999999999999886543 46677889999999999999999999999999
Q ss_pred cCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005738 338 TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAAR 417 (680)
Q Consensus 338 TN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r 417 (680)
||+|+.|||||+||||+||.++|.+||.+.|..||+.|.+....+.+..+ +.||+.++..+|++|+++|.+|.+.|.|
T Consensus 323 tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~--ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 323 TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRF--ELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhH--HHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999998887776665 7799999999999999999999999999
Q ss_pred hcCCcccHHHHHHHHHHHhccccc
Q 005738 418 NESAQITMQHFEAAIDRVIGGLEK 441 (680)
Q Consensus 418 ~~~~~It~~d~~~Al~~v~~g~~~ 441 (680)
..+...|..||..|+++++.|..+
T Consensus 401 arrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 401 ARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988654
No 13
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=376.64 Aligned_cols=251 Identities=43% Similarity=0.710 Sum_probs=238.7
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.-+|.|+.|++.+.+++++.|+. |.+|+.|.++|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45677999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|.|.+++.+|++|+.|..++|+|+||||||+++.+|-. ..+++..+.++++..||.++|||..+..|-||.+||+.+.
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyd-s~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYD-SNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhcccccc-CCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 999999999999999999999999999999999998843 3567788999999999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
|||||+||||+||.|.|+.||...++.||..|.++..+..++.+ +.+......+|||||..+|.+|.+.|.|..+..+
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl--e~li~~kddlSGAdIkAictEaGllAlRerRm~v 414 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL--EELIMTKDDLSGADIKAICTEAGLLALRERRMKV 414 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH--HHHhhcccccccccHHHHHHHHhHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988888775 7788888899999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcc
Q 005738 424 TMQHFEAAIDRVIGG 438 (680)
Q Consensus 424 t~~d~~~Al~~v~~g 438 (680)
+++||..|.++|+..
T Consensus 415 t~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 415 TMEDFKKAKEKVLYK 429 (440)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998753
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=363.86 Aligned_cols=248 Identities=42% Similarity=0.735 Sum_probs=237.1
Q ss_pred CcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
+.-+++=|.|++.+.++++++++. .++|+.|..+|+.-|+|+|||||||||||+||+|+|.+..+.|+.+++++++.+|
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 456899999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
.|++...+|.+|-.|+.++|+|||.||||+++..|..++ ++++.+.++++..||.++|||....++-||.+||+.+.||
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnridild 300 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 300 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEecccccccc
Confidence 999999999999999999999999999999999987654 4578899999999999999999999999999999999999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~ 425 (680)
|||+||||+||.|+||+|+.+.|.+||+.|.++.++....+. ..+|...+|.|||++..+|.+|.+.|.|+.+-.+|.
T Consensus 301 ~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l--~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728|consen 301 PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL--RKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH--HHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccH
Confidence 999999999999999999999999999999999988777765 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 005738 426 QHFEAAIDRVIG 437 (680)
Q Consensus 426 ~d~~~Al~~v~~ 437 (680)
+||+-|+.+++.
T Consensus 379 edfemav~kvm~ 390 (404)
T KOG0728|consen 379 EDFEMAVAKVMQ 390 (404)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=401.51 Aligned_cols=227 Identities=43% Similarity=0.749 Sum_probs=213.4
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
.++++|.||.|++....+|.+++..+++|+.|..+|+.+|+|+||+||||||||+||+|+|+++++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC----CCeEEEeccCCC
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT----AGVVVLAGTNRP 341 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~----~~ViVIaaTN~~ 341 (680)
.|++++++|++|++|+.++|||+||||||+++++|.. ++.+-.++++.|||..||++... .+|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999863 23344467899999999998644 679999999999
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.+.++ ..||+.|+||.||||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~--~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF--KQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH--HHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988886665 89999999999999999999999999876
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-45 Score=364.09 Aligned_cols=251 Identities=40% Similarity=0.690 Sum_probs=237.7
Q ss_pred cCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
.+.+.-+++||.|++.++++|.+.+-. +.++++|..+|+++|+|+|+|||||||||++|||+|...+..|+.+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 456788999999999999999987665 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|..+. ..++.+.++++..||.++|||.+...|-||++||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999986543 4567889999999999999999999999999999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQ 422 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~ 422 (680)
.|||||+|.||+||.|+||.|+.+.|..|++.|.++.....++.+ +.+|+.|.+|.|+++..+|-+|.+.|.|++...
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf--eELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF--EELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH--HHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 999999999999999999999999999999999999998888876 899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 005738 423 ITMQHFEAAIDRVIG 437 (680)
Q Consensus 423 It~~d~~~Al~~v~~ 437 (680)
|+.+||.+++..+..
T Consensus 400 v~heDfmegI~eVqa 414 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQA 414 (424)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999987753
No 17
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=398.86 Aligned_cols=252 Identities=39% Similarity=0.713 Sum_probs=228.6
Q ss_pred ecccCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 005738 181 MDMNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGS 259 (680)
Q Consensus 181 ~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s 259 (680)
+....-|+|+|+||.|++++|.++.+.++. |++|+.|. .|.+...|||||||||||||++|||+|.++...|+++.+.
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 334456899999999999999999999998 99999876 4788889999999999999999999999999999999999
Q ss_pred hhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--CCCCeEEEec
Q 005738 260 DFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--TTAGVVVLAG 337 (680)
Q Consensus 260 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--~~~~ViVIaa 337 (680)
++++||+|++++++|++|++|+..+|||||+||+|+|.++|++++.+|+- +.+++.|||.+||++. ....|+||+|
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV--MDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV--MDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc--HHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 99999999999999999999999999999999999999999988777664 5679999999999997 5678999999
Q ss_pred cCCCCCCchhhcCCCccccccccCCC-CHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCC-CCCHHHHHHHHHHHHHHH
Q 005738 338 TNRPDILDKALLRPGRFDRQITIDKP-DIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTP-GFAGADIANVCNEAALIA 415 (680)
Q Consensus 338 TN~~~~LD~aLlRpgRfd~~I~v~~P-d~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~-G~sgadL~~lv~eAa~~a 415 (680)
|||||.|||||+||||||+-+++.++ |.+.+..+|+...++..++.++++ ..+|+.++ .|||||+-.+|..|.+.|
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL--~eiAk~cp~~~TGADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL--VEIAKKCPPNMTGADLYSLCSDAMLAA 895 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH--HHHHhhCCcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999987 556788899999999999998886 78998864 799999999999999999
Q ss_pred HHhc-----------------CCcccHHHHHHHHHHHhc
Q 005738 416 ARNE-----------------SAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 416 ~r~~-----------------~~~It~~d~~~Al~~v~~ 437 (680)
.++. .-.|+++||.++.++...
T Consensus 896 ikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 896 IKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 8762 125899999999987643
No 18
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=5.7e-45 Score=367.75 Aligned_cols=203 Identities=45% Similarity=0.784 Sum_probs=177.5
Q ss_pred cHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccCcc-ccCCH
Q 005738 424 TMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTK 502 (680)
Q Consensus 424 t~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~~~-~~~tk 502 (680)
|++||++|+++++.|+++++..+++.+++++|||||||||++|++++.+++.+|||+|||. ++||+++.|.+. +..||
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~~~t~ 79 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGS-ALGFTQFTPDEDRYIRTR 79 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCC-CCHCCEECHHTT-SS-BH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCC-cceeEEeccchhcccccH
Confidence 6899999999999999887788999999999999999999999999889999999999998 999999999754 68999
Q ss_pred HHHHHhhHhhhhhHHHHHHHcC--CcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCCc-------cccCCCCC
Q 005738 503 EQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDT-------FEMTKPYS 573 (680)
Q Consensus 503 ~~l~~~i~v~LgGraAEel~fg--~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~~-------~~~~~~~s 573 (680)
++|+++|+|+|||||||+++|| ++|+||++||++||+||+.||.+||||+++|++++...++. +...+++|
T Consensus 80 ~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s 159 (213)
T PF01434_consen 80 SYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMS 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-
T ss_pred HHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcc
Confidence 9999999999999999999999 99999999999999999999999999999999987653331 12245789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHH
Q 005738 574 SKTGAIIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRV 627 (680)
Q Consensus 574 ~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~i 627 (680)
+++...+|.+|+++|++||++|++||++||+.|++||++|+++++|+++||++|
T Consensus 160 ~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 160 EETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999986
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-43 Score=363.51 Aligned_cols=245 Identities=40% Similarity=0.628 Sum_probs=222.5
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..++++|+||+|+.++|+-|+|.|-. +..|+.|+.+ .++.+|||++||||||||+||||+|.+++..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 45789999999999999999998776 8899988743 455699999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC-CC---eEEEeccC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT-AG---VVVLAGTN 339 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~-~~---ViVIaaTN 339 (680)
+|-|++++.+|-+|+.|+.++|++|||||||+|+.+|++ ++.++..+++-+.||.+|||.... .+ |+|+|+||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 999999999999999999999999999999999999975 356778889999999999998643 33 89999999
Q ss_pred CCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Q 005738 340 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 340 ~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~ 419 (680)
.|+.||.||+| ||...|+||+|+.++|..+++..++....+.+++. +.|+..+.||||+||.++|++|.+++.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~--~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNL--EDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999888777765 899999999999999999999999998851
Q ss_pred -----------------CCcccHHHHHHHHHHHhc
Q 005738 420 -----------------SAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 420 -----------------~~~It~~d~~~Al~~v~~ 437 (680)
+..|++.||+.|+.++-.
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 235899999999988743
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8e-43 Score=346.76 Aligned_cols=241 Identities=36% Similarity=0.615 Sum_probs=221.7
Q ss_pred cCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
...+.++|+||+|++++|+.-+-++.+|++|++|..+ .|++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3456899999999999999999999999999998876 4999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.++|.++.+++.+|+.|++.+|||+||||+|+++-.|.-... .-....++|.||.+|||...+.+|+.||+||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel---RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL---RGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh---cccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 999999999999999999999999999999999866642211 11245689999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHH-HHHHHHHHHHHHhcCCc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIA-NVCNEAALIAARNESAQ 422 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~-~lv~eAa~~a~r~~~~~ 422 (680)
||+|+++ ||...|+|.+|+.++|.+|++.+++..++..+.+ ++.++..|.|+||+||. .++..|...|..+++..
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~--~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD--LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC--HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999999 9999999999999999999999999998877666 48999999999999995 78888889999999999
Q ss_pred ccHHHHHHHHHH
Q 005738 423 ITMQHFEAAIDR 434 (680)
Q Consensus 423 It~~d~~~Al~~ 434 (680)
|+.+|++.|+.+
T Consensus 343 v~~edie~al~k 354 (368)
T COG1223 343 VEREDIEKALKK 354 (368)
T ss_pred hhHHHHHHHHHh
Confidence 999999999986
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.2e-42 Score=373.04 Aligned_cols=251 Identities=42% Similarity=0.682 Sum_probs=233.2
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++.+|+++++.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46789999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.|+|.++..++.+|..|+.++||||||||+|+++.+|... .++.+.+.++++.+++.+||++....+++||++||+++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~-~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA-QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccc-cCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 9999999999999999999999999999999998877432 233455677899999999999988889999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
|||+++||||||+.|+|++|+.++|.+||+.++++..+..+++. ..++..|.||||+||.++|++|++.|.++++..|
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~--~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL--EDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999998887766654 8899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcc
Q 005738 424 TMQHFEAAIDRVIGG 438 (680)
Q Consensus 424 t~~d~~~Al~~v~~g 438 (680)
+.+||..|+.+++.+
T Consensus 375 ~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 375 LPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998654
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.1e-40 Score=360.95 Aligned_cols=252 Identities=47% Similarity=0.781 Sum_probs=232.9
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++++++.+.+.. +.+++.|+.+|..+|+|+||+||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45688999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.|.|.++..++.+|..|+.++||||||||+|.++..+.... ..++.+.++++.+++.+++++....+++||+|||+++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998775432 23345677889999999999988889999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
+|++++||||||+.|.|++|+.++|.+||+.++++..+..+.+ +..++..|.||+|+||.++|++|++.|.++++..|
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~--~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD--LEELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999887766555 48899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccc
Q 005738 424 TMQHFEAAIDRVIGGL 439 (680)
Q Consensus 424 t~~d~~~Al~~v~~g~ 439 (680)
+.+||.+|++++..+.
T Consensus 361 ~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 361 TMEDFLKAIEKVMGKE 376 (389)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999999999987654
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.1e-40 Score=361.61 Aligned_cols=251 Identities=42% Similarity=0.705 Sum_probs=232.4
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||.|++++++++.+.+.. +.+|+.|+.+|..+|+|+||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.|.|.++..++.+|..|..+.||||||||||+++.+|... .+++..+.++++.++|.++|++....++.||++||+++.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~-~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDA-TSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCC-CCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 9999999999999999999999999999999999877532 334556677889999999999988889999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
||++++||||||+.|+|+.|+.++|.+||+.++++..+..+++. ..++..+.|+||+||.++|++|++.|.++++..|
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl--~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL--EEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999998877666554 8899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcc
Q 005738 424 TMQHFEAAIDRVIGG 438 (680)
Q Consensus 424 t~~d~~~Al~~v~~g 438 (680)
+.+||..|+++++..
T Consensus 413 t~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 413 TQADFRKAKEKVLYR 427 (438)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998643
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=359.37 Aligned_cols=228 Identities=37% Similarity=0.628 Sum_probs=214.1
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
...+++|+||+|+.++|+.|++++.+ -+.|..|...+++.+.|+|||||||||||+||.|+|..++..|+++.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 44569999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|.|.+++.+|++|.+|+..+|||||+||+|++.++|+.++++ -..+++||||.+|||...-.+|.|+|+|.||+.
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG----VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG----VTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC----chHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 9999999999999999999999999999999999999865432 235799999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
+||||+||||+|+.++.+.|+..+|.+|++.....+..+.++|+ +.+|..|.|||||||..++..|.+.|.++
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl--~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL--ECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch--HHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777775 89999999999999999999999888764
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-39 Score=362.40 Aligned_cols=247 Identities=45% Similarity=0.731 Sum_probs=227.8
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+|++|++.+|+.+++.+.+ ++.++.|...+.+.|+|+||+||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|+|+++++++.+|..|+..+||||||||+|++.+.|+.+. +....++++++|.+||+.....+|+||++||+|+.
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~----~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE----DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC----chHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 99999999999999999999999999999999998885321 22236899999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc-CCc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE-SAQ 422 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~-~~~ 422 (680)
+|++++||||||+.++|++||.++|.+||+.|++........+.++..++..|.||+|+||..+|++|++.+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999665543344456899999999999999999999999999988 778
Q ss_pred ccHHHHHHHHHHH
Q 005738 423 ITMQHFEAAIDRV 435 (680)
Q Consensus 423 It~~d~~~Al~~v 435 (680)
|+++||..|+.++
T Consensus 471 ~~~~~~~~a~~~~ 483 (494)
T COG0464 471 VTLDDFLDALKKI 483 (494)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999874
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.3e-38 Score=353.33 Aligned_cols=244 Identities=29% Similarity=0.437 Sum_probs=214.1
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
.+.++|+||+|++.+|+++.+....+ +......|.+.|+|+||+||||||||++|+++|++++.||+.++++.+.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35778999999999999999866543 3445678999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
+|.++.+++.+|..|+.++||||||||||.++..+... +......+++++++..|+. ...+|+||+|||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999998754321 2234556788999999885 456799999999999999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~ 425 (680)
++++||||||+.++++.|+.++|.+||+.|+++.......+.++..+|..|.||||+||+++|++|+..|..++ +.++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 99999999999999999999999999999999875443334556899999999999999999999999888765 56999
Q ss_pred HHHHHHHHHHhc
Q 005738 426 QHFEAAIDRVIG 437 (680)
Q Consensus 426 ~d~~~Al~~v~~ 437 (680)
+||..|+.++..
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999988754
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-38 Score=373.69 Aligned_cols=248 Identities=47% Similarity=0.780 Sum_probs=226.4
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.+.++|+||+|++.+|++|.+.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|+|.+++.++.+|..|+..+||||||||||++++.|+.. ......++.+++||.+||++....+++||+|||+|+.|
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999877532 12334567999999999999888899999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc-----
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE----- 419 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~----- 419 (680)
|++++||||||+.+++++|+.++|.+||+.+.++..+..+.+ +..+|..|.||||+||.++|++|++.|.++.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~--l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~ 681 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD--LEELAEMTEGYTGADIEAVCREAAMAALRESIGSPA 681 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999887766655 4889999999999999999999999888742
Q ss_pred -------------CCcccHHHHHHHHHHHhcc
Q 005738 420 -------------SAQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 420 -------------~~~It~~d~~~Al~~v~~g 438 (680)
...|+.+||..|+.++...
T Consensus 682 ~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 682 KEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred chhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1269999999999876433
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=328.26 Aligned_cols=226 Identities=37% Similarity=0.593 Sum_probs=203.7
Q ss_pred cCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~-~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
.++++++|+||+|++.+|+.|+|.|.. ++.|+.|. |.+ +.+|+|||||||||||+||+|+|.+++-.|++++.|++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt--GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT--GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhc--CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 367899999999999999999998877 88998887 444 45999999999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC-CCCeEEEeccCC
Q 005738 262 MEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNR 340 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~-~~~ViVIaaTN~ 340 (680)
+++|+|++++.++++|+.|+++.|+||||||||+++..|+. +.++..+++-..||.+|+|... +.+|+|+++||-
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999988753 3456667888999999999864 568999999999
Q ss_pred CCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 341 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 341 ~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
|+.||.|++| ||+++|++|+|+...|..+|+.|+........ +.+...|++.|.||||+||.-+++.|.+...|.
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT-~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLT-EQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccc-hhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 9999999999 99999999999999999999999987765443 344689999999999999999999988877664
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-39 Score=327.83 Aligned_cols=247 Identities=39% Similarity=0.645 Sum_probs=231.3
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
...++|+.+.|.-++..++++.+.. |.+|..+..+|+++|+|++||||||||||++|+++|..+|+.|+.++.+++.+.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 4567999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|.|++++.+|+.|..|+.+.|||||+||||+++.++... ....+.+.+.||-.|+.+||++.....|-+|+|||+|+.|
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se-~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE-GTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecc-ccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 999999999999999999999999999999999988543 3455778899999999999999999999999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQIT 424 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It 424 (680)
||+|+||||+|+.+.+|+|+...|..|++.|.+.+..-...+. +.+.+..+||.|+|+.+.|.||.+.|.+..+..+-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~--eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDD--EAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccH--HHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 9999999999999999999999999999999987765555554 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005738 425 MQHFEAAIDRV 435 (680)
Q Consensus 425 ~~d~~~Al~~v 435 (680)
++|+..++.++
T Consensus 363 ~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 363 HEDFMKLVRKQ 373 (388)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.3e-37 Score=337.06 Aligned_cols=248 Identities=46% Similarity=0.774 Sum_probs=228.4
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++++++.+.+.. +.+++.|+.+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45788999999999999999999886 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+.|.+...++.+|..++...|+||||||+|.++..+... ..+++.+.+.++.+++.+++++....++.||+|||+++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~-~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDS-GTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccC-CCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 9999999999999999999999999999999998776533 233456677889999999999887789999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
+|++++||||||+.|.|+.|+.++|.+|++.++.+..+..+.+ +..++..+.||+|+||.++|++|+..|.++++..|
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~--~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i 351 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD--LEAIAKMTEGASGADLKAICTEAGMFAIREERDYV 351 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999998877665555 48899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHH
Q 005738 424 TMQHFEAAIDRV 435 (680)
Q Consensus 424 t~~d~~~Al~~v 435 (680)
+.+||..|++++
T Consensus 352 ~~~d~~~a~~~~ 363 (364)
T TIGR01242 352 TMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-38 Score=326.86 Aligned_cols=226 Identities=36% Similarity=0.626 Sum_probs=208.1
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhc-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELG-AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g-~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
....++|+||.|++++|+.|++.|.. ++.|+.|..-+ .++|+||||+||||||||++|+|+|+++|.+|+.++.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 45689999999999999999999988 99999985322 45789999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCC--eEEEeccCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAG--VVVLAGTNR 340 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~--ViVIaaTN~ 340 (680)
++++|++++.++.+|..|.+.+||||||||+|.+.+.|. ++.++.....-+++....||+..+.+ |+|++|||+
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 999999999999999999999999999999999999883 35567777788999999999977665 999999999
Q ss_pred CCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 341 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 341 ~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
|..||.|++| |+.++++|+.|+.++|++||+.++++.+++.++|+ ..+|..|.||||.||.++|..|++...|.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~--~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDL--DEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCH--HHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 9999999999 99999999999999999999999999988877775 89999999999999999999999888764
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-36 Score=331.60 Aligned_cols=287 Identities=37% Similarity=0.634 Sum_probs=250.7
Q ss_pred CcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
..++ .++.|.......+++.+.+ +.++..+...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4566 7999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 266 VGVGPSRVRSLFQEARQCA-PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~-P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.|++++.+|..|++|..++ |+||||||+|+++++|... +....++..||+..||+..+..+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988532 223567899999999999988999999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQIT 424 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It 424 (680)
|++++| ||||+.+.+..|+..+|.+|++.+.++.++..+.+ +..+|..|+||+|+||..+|++|++.+.|+ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~--l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVD--LEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhh--HHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999999998875454 489999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHhccccccchhhccccccchhhhhch---------hhhhccccccCCCeeEEEEeeCCCCccceeecccC
Q 005738 425 MQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESG---------HAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN 495 (680)
Q Consensus 425 ~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaG---------havv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~ 495 (680)
+++|..|...+.....+. .+ .+...+.|.++| .-.|.|.+.|++.+.+.+|.|.. |...|.|+
T Consensus 406 ~~~~~~A~~~i~psa~Re--~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk----GVLlyGPP 477 (693)
T KOG0730|consen 406 LEIFQEALMGIRPSALRE--IL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK----GVLLYGPP 477 (693)
T ss_pred HHHHHHHHhcCCchhhhh--ee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc----eEEEECCC
Confidence 899999987764322111 11 334456667766 34578999999999999988743 44455554
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.9e-35 Score=326.27 Aligned_cols=253 Identities=36% Similarity=0.595 Sum_probs=210.0
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC----------e
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP----------F 253 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~----------~ 253 (680)
..+.++|+||+|++++++++++.+.. +.+|+.|+..|.++|+|+|||||||||||++|+++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 45789999999999999999999887 889999999999999999999999999999999999998654 6
Q ss_pred EEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 005738 254 LSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT 329 (680)
Q Consensus 254 i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~ 329 (680)
+.++++++.++|+|.+++.++.+|..++.. .||||||||+|+++++|+.+ ..++....++++||.+||++...
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhcccccC
Confidence 677888999999999999999999998764 69999999999999877532 12333456789999999999888
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcc-cCCCC-------cchhHHHHH--------
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL-KLDNE-------PSFYSQRLA-------- 393 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-~l~~~-------~d~~l~~la-------- 393 (680)
.+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++... .++.+ ...++..++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998742 22100 001111111
Q ss_pred ---------------------hhCCCCCHHHHHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhcccc
Q 005738 394 ---------------------ALTPGFAGADIANVCNEAALIAARN----ESAQITMQHFEAAIDRVIGGLE 440 (680)
Q Consensus 394 ---------------------~~t~G~sgadL~~lv~eAa~~a~r~----~~~~It~~d~~~Al~~v~~g~~ 440 (680)
..+..+||++|+++|.+|...|.++ +...|+++|+..|+......-+
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 1245688999999999998888765 3458999999999987654433
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=327.24 Aligned_cols=248 Identities=36% Similarity=0.617 Sum_probs=223.8
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeech
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGS 259 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s 259 (680)
...+.|++|+|++.+++.|+|.|.. |..|+.|..+++.+|+|+|++||||||||+.|+++|..+ .+.|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4578999999999999999999988 999999999999999999999999999999999999988 4678888999
Q ss_pred hhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 260 DFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 260 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
+..++|+|+.+.+++.+|++|+++.|+|||+||||-|.+.|+. .......+++..||..|||+..++.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999988742 334456678999999999999999999999999
Q ss_pred CCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Q 005738 340 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 340 ~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~ 419 (680)
+|+.+||||+||||||+.+++++|+.+.|.+|+..|.++.. ..-....+..+|..|.||.|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999877 33344456889999999999999999999999998763
Q ss_pred C----------------CcccHHHHHHHHHHHhcc
Q 005738 420 S----------------AQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 420 ~----------------~~It~~d~~~Al~~v~~g 438 (680)
- ..|...||-.|+.++...
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 2 247788888888887543
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-32 Score=324.74 Aligned_cols=246 Identities=44% Similarity=0.725 Sum_probs=219.9
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.+.++|+||+|++++++.+.+++.. +++|+.|+.+|+.+|+|+||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+.|..+..++.+|+.+..+.|+||||||||.+..+++.. .......++++|+..|+++.....++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999998776421 1223356889999999998888889999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc-----
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE----- 419 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~----- 419 (680)
|++++|+|||++.+.++.|+.++|.+||+.+.+...+..+.+ +..++..++||+++|+..+|++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~--l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVD--LDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccC--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998877655444 4889999999999999999999998887642
Q ss_pred --------------CCcccHHHHHHHHHHHhc
Q 005738 420 --------------SAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 420 --------------~~~It~~d~~~Al~~v~~ 437 (680)
...++.+||..|+..+..
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhccc
Confidence 124788999999987643
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4e-32 Score=286.53 Aligned_cols=261 Identities=17% Similarity=0.175 Sum_probs=194.0
Q ss_pred Cccccccc-ccchHHHHHHHHHHHHhcChhhH-hhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 187 DKVFFKDV-AGCDEAKQEIMEFVHFLKNPKKY-EELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 187 ~~~~f~dv-~G~~~~k~~L~e~v~~l~~~~~~-~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
...+|+++ .|+--++..+..++..+. +.| ..+|+++|++++||||||||||++|+++|+++|++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34578888 777777777766654421 122 23688999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC------------C
Q 005738 265 FVGVGPSRVRSLFQEARQC-----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF------------G 327 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~-----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~------------~ 327 (680)
|+|++++.+|.+|..|+.. +||||||||||+++++++.. ...-..+-+..+|+.+||+. .
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 9999999999999999764 69999999999999887521 11112233347888888863 3
Q ss_pred CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC----CCHHH
Q 005738 328 TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG----FAGAD 403 (680)
Q Consensus 328 ~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G----~sgad 403 (680)
...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.|+++..++. .++..|+..++| |.||-
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~---~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSR---EDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCH---HHHHHHHHcCCCCCchhhhHH
Confidence 4567999999999999999999999999965 58999999999999999876642 345788888877 56776
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhc
Q 005738 404 IANVCNEAALIAARNESAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAG 465 (680)
Q Consensus 404 L~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~ 465 (680)
-+.+..++...-..+ +..+. .-++.+.+.++ ...+..-....-..-|+||.++.
T Consensus 340 rar~yd~~v~~~i~~----~g~~~---~~~~l~~~~~~-~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 340 RARVYDDEVRKWIAE----VGVEN---LGKKLVNSKKG-PPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHHHHH----hhHHH---HHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Confidence 677777665544322 12222 22223332222 23344444455567788888875
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.3e-32 Score=295.20 Aligned_cols=247 Identities=36% Similarity=0.572 Sum_probs=206.1
Q ss_pred CCcccccc--cccchHHHHHH--HHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-CeEEeechh
Q 005738 186 KDKVFFKD--VAGCDEAKQEI--MEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV-PFLSMSGSD 260 (680)
Q Consensus 186 ~~~~~f~d--v~G~~~~k~~L--~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~-~~i~is~s~ 260 (680)
.+...|++ |.|++..-..+ +.+...+-.|+...++|+..-+|+|||||||||||++||.+..-++. +--.+++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 45677888 45665544444 22444466888999999999999999999999999999999998864 455689999
Q ss_pred hhhhhccCchhHHHHHHHHHHhc--------CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCe
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQC--------APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV 332 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~--------~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~V 332 (680)
++++|+|+++.++|++|+.|.+. .-.||++||||+++++|++.. ++.--..+++||||..|||...-.++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~--g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA--GSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC--CCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998532 124999999999999997532 22334467999999999999999999
Q ss_pred EEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcc----cCCCCcchhHHHHHhhCCCCCHHHHHHHH
Q 005738 333 VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL----KLDNEPSFYSQRLAALTPGFAGADIANVC 408 (680)
Q Consensus 333 iVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~~~d~~l~~la~~t~G~sgadL~~lv 408 (680)
+||+-||+.|.+|+||+|||||..++++.+||.+.|.+|++.|.++. .++.++| +..||.+|..||||+|+.|+
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVd--l~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVD--LKELAALTKNFSGAELEGLV 448 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcC--HHHHHHHhcCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999998765 3444444 59999999999999999999
Q ss_pred HHHHHHHHHhc---------------CCcccHHHHHHHHHHHh
Q 005738 409 NEAALIAARNE---------------SAQITMQHFEAAIDRVI 436 (680)
Q Consensus 409 ~eAa~~a~r~~---------------~~~It~~d~~~Al~~v~ 436 (680)
+.|.-.|.-+. +-.|+++||..|++.+.
T Consensus 449 ksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 449 KSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred HHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 98887776441 23699999999999874
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.4e-31 Score=283.33 Aligned_cols=244 Identities=36% Similarity=0.562 Sum_probs=208.9
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
....+.|+|++|++.+|+.+.+.+.+ +..+..|..+- .+++|+||.||||||||+|++|+|.|++..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34578999999999999999999988 66688776432 24589999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--CCCCeEEEeccCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--TTAGVVVLAGTNRP 341 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--~~~~ViVIaaTN~~ 341 (680)
+|+|.+++.+|.+|.-|+..+|+|+||||+|.++.+|.. ..++...+...++|.++++.. ..++|+||+|||+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 999999999999999999999999999999999998842 345556677888888888764 45679999999999
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc--
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE-- 419 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~-- 419 (680)
+.+|.+++| ||.+.+++|+|+.+.|..+|+..+.+.+ ..-.+.++..|++.|.||++.||.++|.+|++.-.+..
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~-~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP-NGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 999999999 9999999999999999999999998773 23344556899999999999999999999986544432
Q ss_pred -----------CCcccHHHHHHHHHHHh
Q 005738 420 -----------SAQITMQHFEAAIDRVI 436 (680)
Q Consensus 420 -----------~~~It~~d~~~Al~~v~ 436 (680)
.+.|+..|+..++..+.
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhc
Confidence 23577778888776653
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=8.1e-22 Score=207.84 Aligned_cols=213 Identities=20% Similarity=0.268 Sum_probs=162.5
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCC---eEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechh
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPK---GALLVGPPGTGKTLLAKATAGES-------GVPFLSMSGSD 260 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~---gvLL~GppGtGKT~LAralA~e~-------~~~~i~is~s~ 260 (680)
+++++|++++|+++.+++.++..++.++..|...|. ++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 458999999999999999887777777788877653 48999999999999999999875 23699999999
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
+...++|..+...+.+|+.+. ++||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 999999988888888888764 48999999999965321 1223356777888888753 356778887764
Q ss_pred CC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchh---HHHHHhh--CCCCC-HHHHHHHHH
Q 005738 341 PD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFY---SQRLAAL--TPGFA-GADIANVCN 409 (680)
Q Consensus 341 ~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~---l~~la~~--t~G~s-gadL~~lv~ 409 (680)
.. .++|+|.+ ||+.+|.|+.|+.+++.+|++.++++.....+.+.. .+.+.+. .+.|. ++++++++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 22 34699999 999999999999999999999999876544333221 1222222 24444 799999999
Q ss_pred HHHHHHH
Q 005738 410 EAALIAA 416 (680)
Q Consensus 410 eAa~~a~ 416 (680)
.|...-+
T Consensus 249 ~~~~~~~ 255 (287)
T CHL00181 249 RARMRQA 255 (287)
T ss_pred HHHHHHH
Confidence 8875543
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.6e-21 Score=203.34 Aligned_cols=236 Identities=27% Similarity=0.394 Sum_probs=180.7
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhc
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFV 266 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~ 266 (680)
.+-.|++|+-....+.++.++...-.+.+. .-.+-+++|+|||||||||++||-+|...|..+-.+.+.|.... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998877555544 22344789999999999999999999999999988888775321 1
Q ss_pred cCchhHHHHHHHHHHhcCCe-EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 267 GVGPSRVRSLFQEARQCAPS-IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 267 g~~~~~vr~lf~~A~~~~P~-ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
..+-..+..+|+.++....+ +|||||.|++.-.|.. ...++..+..||.||-.--. .+..++++.+||+|..||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTGd--qSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhcc--cccceEEEeccCCccchh
Confidence 12345788999999886554 8899999999988753 24456677899999854322 455688899999999999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCC-------------------------cchhHHHHHhhCCCCC
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNE-------------------------PSFYSQRLAALTPGFA 400 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~-------------------------~d~~l~~la~~t~G~s 400 (680)
.++-. |||..++||+|..++|..+|..|+.++....+ .+..+...|+.|.|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 99999999999999999999998865532111 1223466789999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 005738 401 GADIANVCNEAALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 401 gadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
|++|..|+--....+.-+....++...|++.++-
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 9999999875444444445556676666666553
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=4.1e-21 Score=202.40 Aligned_cols=213 Identities=21% Similarity=0.276 Sum_probs=163.8
Q ss_pred cc-ccccchHHHHHHHHHHHHhcChhhHhhhcCCC--C-CeEEEEcCCCChHHHHHHHHHHhcC-------CCeEEeech
Q 005738 191 FK-DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI--P-KGALLVGPPGTGKTLLAKATAGESG-------VPFLSMSGS 259 (680)
Q Consensus 191 f~-dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~--p-~gvLL~GppGtGKT~LAralA~e~~-------~~~i~is~s 259 (680)
++ +++|++++|+++.+++.++..++.+...|... | .+++|+||||||||++|+++|..+. .+|+.++++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 44 69999999999999999988888888888775 2 4899999999999999999988662 379999999
Q ss_pred hhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 260 DFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 260 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
++.+.+.|..+..++.+|+++. +++|||||+|.+.+.+. ..+.....++.|+..|+. ...+++||++++
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~------~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~ 168 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMEN--QRDDLVVILAGY 168 (284)
T ss_pred HHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC------ccchHHHHHHHHHHHHhc--CCCCEEEEEeCC
Confidence 9999999998888888888874 38999999999954321 122334567778888875 346778888876
Q ss_pred CC--C---CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhh------CCC-CCHHHHHHH
Q 005738 340 RP--D---ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAAL------TPG-FAGADIANV 407 (680)
Q Consensus 340 ~~--~---~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~------t~G-~sgadL~~l 407 (680)
.. + .++|+|.+ ||+..|.||.++.+++.+|++.++++.....+.+. ...+... .+. -++++++++
T Consensus 169 ~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ 245 (284)
T TIGR02880 169 KDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNA 245 (284)
T ss_pred cHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 42 3 24899999 99999999999999999999999988654433322 2333332 122 247899999
Q ss_pred HHHHHHHHHH
Q 005738 408 CNEAALIAAR 417 (680)
Q Consensus 408 v~eAa~~a~r 417 (680)
+..+...-+.
T Consensus 246 ve~~~~~~~~ 255 (284)
T TIGR02880 246 IDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHH
Confidence 9988765443
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=5.9e-21 Score=198.97 Aligned_cols=212 Identities=20% Similarity=0.270 Sum_probs=158.8
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCC---CeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeech
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIP---KGALLVGPPGTGKTLLAKATAGES-------GVPFLSMSGS 259 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p---~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is~s 259 (680)
.+++++|++++|+.+++++.+..........|...+ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478999999999999999998766565566676644 468999999999999999999864 3478899999
Q ss_pred hhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 260 DFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 260 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
++...++|.....++.+|+.+. ++||||||+|.|.+. +..+.....++.|+..|+.. ...+++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~-------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG-------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC-------CccchHHHHHHHHHHHHhcc--CCCEEEEecCC
Confidence 9999999999999999998774 489999999999531 11223345778888888864 34566666554
Q ss_pred CCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhh---------CCCCCHHHHH
Q 005738 340 RPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAAL---------TPGFAGADIA 405 (680)
Q Consensus 340 ~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~---------t~G~sgadL~ 405 (680)
..+ .++|+|.+ ||+..+.++.++.+++.+|++.++.......+.+. ...++.. ...-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 322 36889998 99999999999999999999999987654433322 2233211 1123578888
Q ss_pred HHHHHHHHHHH
Q 005738 406 NVCNEAALIAA 416 (680)
Q Consensus 406 ~lv~eAa~~a~ 416 (680)
+++..|....+
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 88888765544
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.8e-21 Score=206.78 Aligned_cols=207 Identities=27% Similarity=0.374 Sum_probs=161.9
Q ss_pred ccccccccchHHHHHHHH-HHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 189 VFFKDVAGCDEAKQEIME-FVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e-~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
-+|+.|+=..+.|+++.+ +.++++..+.|++.|...-+|.|||||||||||+++.|+|++++..++-++.++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 789999999999999877 45568999999999999999999999999999999999999999999988876632
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC--CCC-hHHHHHHHHHHHhhcCCCCCC--CeEEEeccCCCC
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFS--GGN-DERESTLNQLLVEMDGFGTTA--GVVVLAGTNRPD 342 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~--~~~-~~~~~~l~~LL~~md~~~~~~--~ViVIaaTN~~~ 342 (680)
... .++.++..+.. .+||+|.+||+-...+++.... +.+ ....-++..||..+||+-... ..|||.|||+++
T Consensus 273 ~n~-dLr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDS-DLRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcH-HHHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 222 36777665543 3799999999876644332111 111 123468999999999987665 589999999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC--CCHHHHHHH
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG--FAGADIANV 407 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G--~sgadL~~l 407 (680)
.|||||+||||.|.+|+++.=+...-+.++..++..-. +. . ....+.+...+ .|+||++..
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h--~-L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DH--R-LFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-Cc--c-hhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999886432 11 1 12444444433 589998653
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=3.5e-21 Score=177.87 Aligned_cols=130 Identities=42% Similarity=0.692 Sum_probs=116.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCC
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCA-PSIVFIDEIDAIGRARGRGGFS 306 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~-P~ILfIDEiD~L~~~r~~~~~~ 306 (680)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.++.+|.+++... ||||||||+|.+..... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 689999999999999999999999999999999998888889999999999999888 99999999999988761 2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCC-CCeEEEeccCCCCCCchhhcCCCccccccccCC
Q 005738 307 GGNDERESTLNQLLVEMDGFGTT-AGVVVLAGTNRPDILDKALLRPGRFDRQITIDK 362 (680)
Q Consensus 307 ~~~~~~~~~l~~LL~~md~~~~~-~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~ 362 (680)
..+......+++|+..++..... .+++||++||.++.++++++| +||++.+++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34566678899999999987655 569999999999999999998 89999998874
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.7e-20 Score=189.55 Aligned_cols=241 Identities=21% Similarity=0.288 Sum_probs=180.1
Q ss_pred cccccccchHHHHHHHHHHHH-hcChhhH-hhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeec
Q 005738 190 FFKDVAGCDEAKQEIMEFVHF-LKNPKKY-EELGAKIPKGALLVGPPGTGKTLLAKATAGESG---------VPFLSMSG 258 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~-l~~~~~~-~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~---------~~~i~is~ 258 (680)
-|+.++=-...|++|..++.. +...++- ..-=+...+-+||+||||||||+|+||+|+.+. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 467777778899999887765 3322210 001123346699999999999999999999773 35889999
Q ss_pred hhhhhhhccCchhHHHHHHHHHHhcC---C--eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeE
Q 005738 259 SDFMEMFVGVGPSRVRSLFQEARQCA---P--SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVV 333 (680)
Q Consensus 259 s~~~~~~~g~~~~~vr~lf~~A~~~~---P--~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~Vi 333 (680)
..+.++|++++.+.+..+|++..+.. . ..++|||+++|+..|............-+++|.+|.+||.++...+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999999999876532 2 266799999999888544333445566789999999999999999999
Q ss_pred EEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccC-----CCC----c-------chhHHHHHhh-C
Q 005738 334 VLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKL-----DNE----P-------SFYSQRLAAL-T 396 (680)
Q Consensus 334 VIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l-----~~~----~-------d~~l~~la~~-t 396 (680)
+++|+|-.+.||.|+.. |-|-+.++++|+...|.+|++..+..+.- ... . +.....++.. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 99999999999999999999987754311 111 0 1111222222 5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 005738 397 PGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 397 ~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
.|.||+-|+.|---|. |.--...+|+.++|..|+-.
T Consensus 378 ~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHH
Confidence 8999999988755432 21123357999998888754
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.4e-19 Score=200.92 Aligned_cols=257 Identities=25% Similarity=0.418 Sum_probs=194.5
Q ss_pred HHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCC
Q 005738 206 EFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAP 285 (680)
Q Consensus 206 e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P 285 (680)
+++..+.-+..-...+.+....+||+|+||||||++++++|.++|.+++.++|.++.+...+..+.++...|.+|+.+.|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44444544433333455566779999999999999999999999999999999999999888899999999999999999
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCC
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPD 364 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd 364 (680)
+|||+-++|.++..+. .+.+-...+.++.++. .|.+. +..+++||++|+..+.+++.+++ -|-..|.++.|+
T Consensus 492 avifl~~~dvl~id~d----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQD----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred eEEEEeccceeeecCC----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCC
Confidence 9999999999974432 2334445566776665 34443 56789999999999999999998 777899999999
Q ss_pred HHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH---Hhc-----------------CCccc
Q 005738 365 IKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA---RNE-----------------SAQIT 424 (680)
Q Consensus 365 ~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~---r~~-----------------~~~It 424 (680)
.++|.+||+.++....++.++. ...++.+|.||+.+|+..++..+-+.+. .+. ...++
T Consensus 565 e~qRl~iLq~y~~~~~~n~~v~--~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~ 642 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHLPLNQDVN--LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLT 642 (953)
T ss_pred HHHHHHHHHHHHhccccchHHH--HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceec
Confidence 9999999999999887766554 4889999999999999999876522221 111 24699
Q ss_pred HHHHHHHHHHHhccccccchhhccccccchhhhhchh---------hhhccccccCCCe
Q 005738 425 MQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGH---------AVAGWFLEHAEPL 474 (680)
Q Consensus 425 ~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGh---------avv~~~l~~~~~~ 474 (680)
++||..|+++.-... +..+-.-....+.||++|- --++.+|.|++-+
T Consensus 643 ~edf~kals~~~~~f---s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf 698 (953)
T KOG0736|consen 643 EEDFDKALSRLQKEF---SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF 698 (953)
T ss_pred HHHHHHHHHHHHHhh---hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhh
Confidence 999999999763111 1122222234567777762 1246667776644
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-18 Score=192.64 Aligned_cols=212 Identities=22% Similarity=0.244 Sum_probs=165.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESG----VPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIG 297 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~----~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~ 297 (680)
+-.+.++||+||+|||||.|+++++.++. +.+..++|+.+....+....+.++.+|.++.+++|+||++|++|.|.
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 33467899999999999999999999874 45778899988766555566778999999999999999999999998
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHh-hcCCC-CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHH
Q 005738 298 RARGRGGFSGGNDERESTLNQLLVE-MDGFG-TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIY 375 (680)
Q Consensus 298 ~~r~~~~~~~~~~~~~~~l~~LL~~-md~~~-~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~ 375 (680)
...+. .++......+.++.+|.. +..+. .+..+.||++.+....|+|-|..|++|+.++.++.|+..+|.+||+..
T Consensus 508 ~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 508 SASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTI 585 (952)
T ss_pred ccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHH
Confidence 73321 122233333344444422 22222 344579999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHh
Q 005738 376 LKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN----ESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 376 l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~----~~~~It~~d~~~Al~~v~ 436 (680)
+++...+.. ..+++.++..|+||...|+.-++.+|...|.+. +.+.+|.++|.+++....
T Consensus 586 ~s~~~~~~~-~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 586 FSKNLSDIT-MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHhhhhhhh-hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 987653332 223566999999999999999999998777632 233789999999998764
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=1.7e-18 Score=173.01 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=127.4
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
..+|+|++|++..+..+.-+++..+... ....++|||||||+||||||+.+|++++.+|..+++..+.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~----- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE----- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----
Confidence 4489999999999999988887643221 2346899999999999999999999999999999886532
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------C--------CCC
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------T--------TAG 331 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~--------~~~ 331 (680)
....+..++.... ...||||||||.|. ...+..+... |+.+. . -..
T Consensus 88 -k~~dl~~il~~l~--~~~ILFIDEIHRln------------k~~qe~Llpa---mEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 -KAGDLAAILTNLK--EGDILFIDEIHRLN------------KAQQEILLPA---MEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp -SCHHHHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHH---HHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -hHHHHHHHHHhcC--CCcEEEEechhhcc------------HHHHHHHHHH---hccCeEEEEeccccccceeeccCCC
Confidence 1233444444433 35799999999993 3334444444 44321 1 134
Q ss_pred eEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHH
Q 005738 332 VVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEA 411 (680)
Q Consensus 332 ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eA 411 (680)
+.+|+||++...|.+.|+. ||.....+..++.++..+|++...+..+++.+.+. ...||.++.| +++-..++++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~-~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDA-AEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHH-HHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999999 99988899999999999999998887776655544 4789999988 667666666653
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=4.4e-18 Score=181.00 Aligned_cols=211 Identities=22% Similarity=0.310 Sum_probs=155.6
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCc
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVG 269 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~ 269 (680)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999999888653221 124568999999999999999999999998887766543211
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC----------------CCCCeE
Q 005738 270 PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG----------------TTAGVV 333 (680)
Q Consensus 270 ~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~----------------~~~~Vi 333 (680)
...+...+... ..+.+|||||+|.+.+. .+..+ +..|+... ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~------------~~e~l---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA------------VEELL---YPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH------------HHHHh---hHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12223333322 34689999999998422 12222 22222211 123478
Q ss_pred EEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005738 334 VLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 334 VIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~ 413 (680)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+.......+.+ .++.++..+.|.. +.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 99999999999999998 9988899999999999999999888665554433 3578899888854 777889998777
Q ss_pred HHHHhcCCcccHHHHHHHHHH
Q 005738 414 IAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 414 ~a~r~~~~~It~~d~~~Al~~ 434 (680)
.|...+...|+.+++..+++.
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 776666678999999999876
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.8e-18 Score=194.66 Aligned_cols=262 Identities=40% Similarity=0.618 Sum_probs=210.5
Q ss_pred hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEE
Q 005738 211 LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 211 l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfI 290 (680)
+..+..+..++..+|++++++||||||||+++++++.+ +..+..+++.+....+.|..+.+.+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred cCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHH
Q 005738 291 DEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 370 (680)
Q Consensus 291 DEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~ 370 (680)
||+|.+.+.+.. ........++.+++..|+++. ...+++++.||++..+|+++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988753 223445678899999999988 444999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc------CCcccHHHHHHHHHHHhcc----cc
Q 005738 371 IFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE------SAQITMQHFEAAIDRVIGG----LE 440 (680)
Q Consensus 371 Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~------~~~It~~d~~~Al~~v~~g----~~ 440 (680)
|+..+.+......+.+ ...++..+.|++++++..+|.++...+.++. ...++.+++.++++++... ..
T Consensus 158 i~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (494)
T COG0464 158 ILQIHTRLMFLGPPGT--GKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFE 235 (494)
T ss_pred HHHHHHhcCCCccccc--HHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccC
Confidence 9999998776665444 4889999999999999999999998888775 3468999999999987542 00
Q ss_pred ccchhhccccccchhhhhchhhhhccccccCCCeeEEEEee
Q 005738 441 KKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVP 481 (680)
Q Consensus 441 ~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~p 481 (680)
.....+.+. .-.--..+..+-.+.|++.+++.+.+..+.|
T Consensus 236 ~~~v~~~di-ggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~ 275 (494)
T COG0464 236 DEDVTLDDI-GGLEEAKEELKEAIETPLKRPELFRKLGLRP 275 (494)
T ss_pred CCCcceehh-hcHHHHHHHHHHHHHhHhhChHHHHhcCCCC
Confidence 000000000 0011233445667778887776544433333
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=6.8e-18 Score=181.71 Aligned_cols=216 Identities=20% Similarity=0.275 Sum_probs=160.9
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccC
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGV 268 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~ 268 (680)
.+|+|++|+++.++.+..++...+.+ ...+.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------ 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------
Confidence 47999999999999999888754322 23567899999999999999999999999998877765432
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh------cC-CC------CCCCeEEE
Q 005738 269 GPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM------DG-FG------TTAGVVVL 335 (680)
Q Consensus 269 ~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m------d~-~~------~~~~ViVI 335 (680)
....+..++... ..++||||||||.+.. ..+..+..++... +. .. ...++.+|
T Consensus 89 ~~~~l~~~l~~l--~~~~vl~IDEi~~l~~------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 89 KPGDLAAILTNL--EEGDVLFIDEIHRLSP------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred ChHHHHHHHHhc--ccCCEEEEecHhhcch------------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 122334444432 3468999999999832 1222333333221 00 00 11347889
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
++||++..++++|++ ||...+.++.|+.+++.+|++..+...+...+.+. +..|+..+.|. ++.+.++++.+...+
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G~-pR~a~~~l~~~~~~a 230 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRGT-PRIANRLLRRVRDFA 230 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCCC-chHHHHHHHHHHHHH
Confidence 999999999999988 99989999999999999999999887766655443 57889888874 478888888877777
Q ss_pred HHhcCCcccHHHHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al~~v 435 (680)
...+...|+.+++..+++..
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 231 QVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 66666789999999998654
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=2e-17 Score=195.41 Aligned_cols=223 Identities=21% Similarity=0.314 Sum_probs=162.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
-++++++|.++..+.+.+++.. . ...+++|+||||||||++|+++|..+ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~---~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR---R---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc---C---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 3688999999888876655432 1 24688999999999999999999987 677899998
Q ss_pred hhhh--hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 259 SDFM--EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 259 s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
+.+. ..|.|..+.+++.+|+.+..+.|+||||||||.|.+.+.. ++++...... |+..+ .++.+.+|+
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~~~~~~~~~~---L~~~l----~~g~i~~Ig 316 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT---SGGSMDASNL---LKPAL----SSGKLRCIG 316 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC---CCccHHHHHH---HHHHH----hCCCeEEEE
Confidence 8887 4688999999999999998888999999999999765421 1122222223 33333 356799999
Q ss_pred ccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc----CCCCcchhHHHHHhhCCCCC-----HH
Q 005738 337 GTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK----LDNEPSFYSQRLAALTPGFA-----GA 402 (680)
Q Consensus 337 aTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~----l~~~~d~~l~~la~~t~G~s-----ga 402 (680)
+||..+ ..|++|.| ||. .|.++.|+.+++.+|++.+..... +.. .+..+..++..+..|- +.
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i-~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKY-SDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCccc-CHHHHHHHHHhhhcccccccCCH
Confidence 999643 47999999 996 799999999999999997765432 111 2333455666655543 33
Q ss_pred HHHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhc
Q 005738 403 DIANVCNEAALIAARN----ESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 403 dL~~lv~eAa~~a~r~----~~~~It~~d~~~Al~~v~~ 437 (680)
..-.++++|+.....+ .+..|+.+|+..++.+..+
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 4456777766433222 2346999999999998743
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=6.4e-17 Score=164.65 Aligned_cols=214 Identities=21% Similarity=0.316 Sum_probs=167.3
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
.-+|+|.+|++++|+.|+=++..-+.. .....++||+||||.||||||+.+|+++|+.+-..++.-+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK---- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK---- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC----
Confidence 457999999999999999988874432 234678999999999999999999999999999988866521
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC----------------CCCC
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG----------------TTAG 331 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~----------------~~~~ 331 (680)
+..+-.++.... ..+|+||||||.+.+ ..+.+++-. |+.|. .-..
T Consensus 91 --~gDlaaiLt~Le--~~DVLFIDEIHrl~~------------~vEE~LYpa---MEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 --PGDLAAILTNLE--EGDVLFIDEIHRLSP------------AVEEVLYPA---MEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred --hhhHHHHHhcCC--cCCeEEEehhhhcCh------------hHHHHhhhh---hhheeEEEEEccCCccceEeccCCC
Confidence 222333333322 237999999999943 234455444 33331 1245
Q ss_pred eEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHH
Q 005738 332 VVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEA 411 (680)
Q Consensus 332 ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eA 411 (680)
+.+|+||.+...|...|+. ||.....+..++.++..+|+....+.+.++.+.+. ...+|+++.| +++-..+|+++.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~-a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEA-ALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHH-HHHHHHhccC-CcHHHHHHHHHH
Confidence 8899999999999999998 99999999999999999999999988877766554 4679999988 667777888888
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHH
Q 005738 412 ALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 412 a~~a~r~~~~~It~~d~~~Al~~v 435 (680)
.-.|.-++...|+.+-...|++..
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHh
Confidence 888877788899999888888765
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.73 E-value=7.4e-17 Score=183.74 Aligned_cols=214 Identities=21% Similarity=0.277 Sum_probs=147.3
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEe
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSM 256 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~i 256 (680)
...+|++++|++.+.+.++..+ . ...+.++||+||||||||++|++++..+ +.+|+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 3468999999999998887542 1 2235789999999999999999998643 4689999
Q ss_pred echhh-------hhhhccCchh----------------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHH
Q 005738 257 SGSDF-------MEMFVGVGPS----------------RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERE 313 (680)
Q Consensus 257 s~s~~-------~~~~~g~~~~----------------~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~ 313 (680)
+|+.. .+...+.... ....++.. ...++|||||||.|. ...+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~------------~~~q 192 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELH------------PVQM 192 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCC------------HHHH
Confidence 98631 1111111000 00011222 234799999999983 2233
Q ss_pred HHHHHHHHhh----c-----CC--------------CCCCC-eEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHH
Q 005738 314 STLNQLLVEM----D-----GF--------------GTTAG-VVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRD 369 (680)
Q Consensus 314 ~~l~~LL~~m----d-----~~--------------~~~~~-ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~ 369 (680)
..+..+++.- + +. .-..+ .+|++|||.|+.++|++++ |+ ..+.++.++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 3333333220 0 00 00122 4555667789999999999 88 46889988999999
Q ss_pred HHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 370 QIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 370 ~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
+|++..+++.....+.+. ++.++..+. +++++.++++.|+..|..+++..|+.+|+++++.
T Consensus 270 ~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999988776544433 456666553 7899999999999988888888999999999975
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=5.6e-17 Score=192.70 Aligned_cols=164 Identities=30% Similarity=0.451 Sum_probs=124.5
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh---------
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM--------- 262 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~--------- 262 (680)
+++.|++++|+++.+++...... +......+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35899999999999877642211 111224799999999999999999999999999999865432
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC-----CC--------CC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG-----FG--------TT 329 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~-----~~--------~~ 329 (680)
..|.|....++...|..+..+.| ||||||||.+.+... ++ ..+.|+..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~------~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR------GD-----PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC------CC-----HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24677777788888888876666 889999999964321 11 12344444442 11 12
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHh
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYL 376 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l 376 (680)
+++++|+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999999 995 78999999999999998876
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=9.7e-17 Score=188.16 Aligned_cols=224 Identities=23% Similarity=0.331 Sum_probs=161.5
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeech
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSGS 259 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~s 259 (680)
+++.++|.++..+++.+++.. +.+.++||+||||||||++|+++|... +..++.++.+
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 578899999888888776543 124678999999999999999999864 4455666655
Q ss_pred hhh--hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 260 DFM--EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 260 ~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
.+. ..|.|..+.+++.+|..+....++||||||||.|.+.+.. +++..+..+++..++ .+..+.||++
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---~~g~~d~~nlLkp~L-------~~g~i~vIgA 321 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQVDAANLIKPLL-------SSGKIRVIGS 321 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---CCcHHHHHHHHHHHH-------hCCCeEEEec
Confidence 555 4577888899999999998888999999999999765421 122223333344333 3567999999
Q ss_pred cCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchh---HHHHHhhC-----CCCCHHHH
Q 005738 338 TNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFY---SQRLAALT-----PGFAGADI 404 (680)
Q Consensus 338 TN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~---l~~la~~t-----~G~sgadL 404 (680)
||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+...+.....+... +...+..+ ..+-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99865 47999999 995 79999999999999999887765544443221 22223222 23445678
Q ss_pred HHHHHHHHHHHH----HhcCCcccHHHHHHHHHHHhcc
Q 005738 405 ANVCNEAALIAA----RNESAQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 405 ~~lv~eAa~~a~----r~~~~~It~~d~~~Al~~v~~g 438 (680)
..++++|+.... ...+..|+.+|+.+.+.+..+-
T Consensus 399 idlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 889998875432 2234569999999999887543
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=7.6e-17 Score=171.16 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=140.1
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
.-+++|++|++....+-.-+-+.+.. ....+++|||||||||||||+.||+..+.+|..+|...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------
Confidence 34799999998766443222222222 22467899999999999999999999999999999854
Q ss_pred CchhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc--CCC
Q 005738 268 VGPSRVRSLFQEARQCA----PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT--NRP 341 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~----P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT--N~~ 341 (680)
.+-+.+|.++++|+... ..||||||||.+-+. ....||-.| .++.|++|+|| |..
T Consensus 84 ~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~---------------QQD~lLp~v----E~G~iilIGATTENPs 144 (436)
T COG2256 84 SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA---------------QQDALLPHV----ENGTIILIGATTENPS 144 (436)
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh---------------hhhhhhhhh----cCCeEEEEeccCCCCC
Confidence 35678999999996543 379999999999332 123344444 34667888776 444
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc--ccCCC---C-cchhHHHHHhhCCCCCHHHHHHHHHHHHH--
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK--LKLDN---E-PSFYSQRLAALTPGFAGADIANVCNEAAL-- 413 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~---~-~d~~l~~la~~t~G~sgadL~~lv~eAa~-- 413 (680)
-.|.+||++ |. +.+.+.+.+.++..++++..+.. .++.. . .+...+.++..+.| |.+.++|..-+
T Consensus 145 F~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~ 217 (436)
T COG2256 145 FELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAA 217 (436)
T ss_pred eeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHH
Confidence 579999999 77 67889999999999999884433 23321 0 12234667777766 66666553222
Q ss_pred HHHHhcCCcccHHHHHHHHHHH
Q 005738 414 IAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 414 ~a~r~~~~~It~~d~~~Al~~v 435 (680)
.+.+.+. .++.+++++.+.+.
T Consensus 218 ~~~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 218 LSAEPDE-VLILELLEEILQRR 238 (436)
T ss_pred HhcCCCc-ccCHHHHHHHHhhh
Confidence 2222222 44588888887764
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.2e-16 Score=171.85 Aligned_cols=209 Identities=19% Similarity=0.234 Sum_probs=149.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-------EE-eec
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-------LS-MSG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~-------i~-is~ 258 (680)
...+|+||+|++.+...|...+.. .++++.+||+||||||||++|+.+|+.+++.- .. -+|
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 345899999999999988877653 23567799999999999999999999887631 00 011
Q ss_pred hhhhhh----h------ccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFMEM----F------VGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~~----~------~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
..+... + ...+...+|.+.+.+.. ....|+||||+|.|. ....|.||..|+
T Consensus 82 ~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls---------------~~A~NALLKtLE 146 (484)
T PRK14956 82 LEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT---------------DQSFNALLKTLE 146 (484)
T ss_pred HHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC---------------HHHHHHHHHHhh
Confidence 111100 0 11223456666655542 234699999999982 236788888887
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +..++++|.+|+.++.|.+++++ |+ .++.|..++..+..+.++..+...++..+.+ .+..|+..+.| +.++.
T Consensus 147 E--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d~RdA 219 (484)
T PRK14956 147 E--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-SVRDM 219 (484)
T ss_pred c--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-hHHHH
Confidence 6 45678888899989999999999 88 5688999999999999999888766554433 35778888877 66777
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
-+++..+... ....|+.+++.+.+
T Consensus 220 L~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 220 LSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 7888765432 23358888876655
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.6e-16 Score=173.00 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=143.1
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC----------------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 251 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~---------------- 251 (680)
+.+|+|++|++.+++.|...+.. .++|+++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 45799999999998888776542 236778999999999999999999998765
Q ss_pred --------CeEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 252 --------PFLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 252 --------~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
.++.++++. ..+-..+|.+.+.+... ...||||||+|.|.. ..++.|
T Consensus 79 ~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~L 137 (472)
T PRK14962 79 SIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNAL 137 (472)
T ss_pred HHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHH
Confidence 233343321 12334566666555422 346999999999832 245677
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
+..++. +...+++|++|+.+..+++++++ |+ ..+.+.+|+.++...+++..++..+...+.+ .+..|+..+.|
T Consensus 138 Lk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~e-al~~Ia~~s~G- 210 (472)
T PRK14962 138 LKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDRE-ALSFIAKRASG- 210 (472)
T ss_pred HHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhCC-
Confidence 777775 34567777777778899999998 88 5789999999999999999887665544433 35678877755
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
+.+++.+.+..+... .+ ..|+.+++..++.
T Consensus 211 dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 444555555443322 22 3499999998874
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5e-16 Score=175.85 Aligned_cols=207 Identities=16% Similarity=0.227 Sum_probs=148.4
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------eE
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP------------FL 254 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~------------~i 254 (680)
...+|+||+|++.+++.|.+.+.. .++++.+||+||+|+|||++|+.+|+.+++. .-
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 445899999999999999888763 3467889999999999999999999988761 10
Q ss_pred Ee-ech--------hhhhhh--ccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 255 SM-SGS--------DFMEMF--VGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 255 ~i-s~s--------~~~~~~--~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
.+ +|. ++++.- ...+-..+|++.+.+.. ....|+||||+|.|. ....|.|
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls---------------~~AaNAL 144 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT---------------NHAFNAM 144 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC---------------HHHHHHH
Confidence 00 111 111100 01234567777776543 234799999999982 2356888
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
|+.|+. +..++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.++.++.+.++..+.+ .+..|+..+.|
T Consensus 145 LKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~G- 217 (700)
T PRK12323 145 LKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQG- 217 (700)
T ss_pred HHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888886 45678888889999999999999 88 7899999999999999998887665554433 24667777766
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
+.++..+++.++... +...|+.+++..
T Consensus 218 s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 218 SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 777888888765532 233566665544
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=1.1e-14 Score=164.81 Aligned_cols=206 Identities=21% Similarity=0.304 Sum_probs=147.8
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
..+|+||+|++++++.|.+++....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~---- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT---- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc----
Confidence 34799999999999999998865332 234789999999999999999999999999999999987532
Q ss_pred CchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 268 VGPSRVRSLFQEARQ------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
...++.+...+.. ..+.+|+|||+|.+.... + ...++.|+..++. .+..+|+++|.+
T Consensus 78 --~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d---~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 --ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------D---RGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred --HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------c---hhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1233333333322 246799999999984321 1 1234455555542 234566677888
Q ss_pred CCCch-hhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 005738 342 DILDK-ALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNES 420 (680)
Q Consensus 342 ~~LD~-aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~ 420 (680)
..+++ .|++ |+ ..|.|+.|+..++..+++.++...++..+.+ .+..|+..+.| |++.+++.....+ .+.
T Consensus 141 ~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a--~~~ 210 (482)
T PRK04195 141 YDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA--EGY 210 (482)
T ss_pred cccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh--cCC
Confidence 87777 5655 44 6799999999999999999998776655533 35778877655 8888888765433 455
Q ss_pred CcccHHHHHHHH
Q 005738 421 AQITMQHFEAAI 432 (680)
Q Consensus 421 ~~It~~d~~~Al 432 (680)
..|+.+++....
T Consensus 211 ~~it~~~v~~~~ 222 (482)
T PRK04195 211 GKLTLEDVKTLG 222 (482)
T ss_pred CCCcHHHHHHhh
Confidence 678888887654
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.3e-15 Score=174.32 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=146.6
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe--EEee------c
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSMS------G 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~--i~is------~ 258 (680)
...+|+||+|++.+++.|.+.++. .++++.+||+||+|||||++|+++|+.+++.- -... |
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 345899999999999999887652 34678889999999999999999999886531 0001 1
Q ss_pred hhh--------hhh--hccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDF--------MEM--FVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~--------~~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
..+ ++. ....+-..+|.+++.+.. ....|+||||+|.|.. ...|.||+.|+
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKtLE 144 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKTLE 144 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHHHH
Confidence 111 100 001233456777776543 2346999999999821 34677787777
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. ...++++|.+||.+..|.+.+++ |+ .++.|..++.++..++|+..+...++..+.+ .+..|++...| +.++.
T Consensus 145 E--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-smRdA 217 (830)
T PRK07003 145 E--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SMRDA 217 (830)
T ss_pred h--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 6 45578888899999999999998 88 7899999999999999999888766554433 35678888877 56777
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
.+++.++... ....|+.+++..
T Consensus 218 LsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 218 LSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHh----ccCCcCHHHHHH
Confidence 7777766533 223466655544
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.1e-15 Score=171.21 Aligned_cols=203 Identities=16% Similarity=0.251 Sum_probs=148.6
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------- 252 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------------- 252 (680)
...+|+||+|++.+++.|...+.. .++++.+||+||||+|||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 345899999999999999887752 3567889999999999999999999988652
Q ss_pred ----------eEEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHH
Q 005738 253 ----------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQ 318 (680)
Q Consensus 253 ----------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~ 318 (680)
++.+++++ ..+...+|.+...+.. ....|++|||+|.|.. ...+.
T Consensus 79 ~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NA 137 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNA 137 (702)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHH
Confidence 22222221 1233456777665532 2346999999999821 24567
Q ss_pred HHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 319 LLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 319 LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
|+..++. +..++.+|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+.+.+...+.+. +..|+..+.|
T Consensus 138 LLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eA-L~~IA~~S~G 211 (702)
T PRK14960 138 LLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDA-IWQIAESAQG 211 (702)
T ss_pred HHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC
Confidence 7777775 34566777777888888888887 88 67899999999999999999887766555443 5678888766
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 399 FAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 399 ~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.+++..+... +...|+.+++...+
T Consensus 212 -dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 212 -SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 777888887765432 35578988887654
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.3e-15 Score=162.14 Aligned_cols=209 Identities=17% Similarity=0.227 Sum_probs=145.3
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE--------eec
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS--------MSG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~--------is~ 258 (680)
.+.+|+||+|++.+++.|+..+.. .+.|+.+||+||||+|||++|+++|+.+.+.... .+|
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 346899999999999998877652 2457889999999999999999999988643110 011
Q ss_pred hhhhhh-----h---c--cCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFMEM-----F---V--GVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~~-----~---~--g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
.++... + . ......++.+...+... ...|++|||+|.+. ....+.||..++
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~---------------~~a~naLLk~lE 144 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS---------------RHSFNALLKTLE 144 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC---------------HHHHHHHHHHHh
Confidence 111100 0 0 02234456666554321 23699999999882 134567777777
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +...+.+|.+|+.++.+.+.+.+ |+ ..+.+++|+.++..++++..++..+...+.+ .+..++..+.| +.+++
T Consensus 145 e--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~R~a 217 (363)
T PRK14961 145 E--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SMRDA 217 (363)
T ss_pred c--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 6 34456667777778889999987 87 6789999999999999999888766444333 34667877766 67777
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.+++..+... +...|+.+++.+++
T Consensus 218 l~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 218 LNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 7777765432 45679999888776
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.66 E-value=5.1e-15 Score=161.27 Aligned_cols=223 Identities=22% Similarity=0.221 Sum_probs=151.7
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeechh
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG---------VPFLSMSGSD 260 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~---------~~~i~is~s~ 260 (680)
..++++|.++..+.|..++..... ...|.+++|+||||||||++++++++++. +++++++|..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 345899999999999888765221 13457899999999999999999998652 5788888854
Q ss_pred hhh----------hhc--cC-------c-hhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 261 FME----------MFV--GV-------G-PSRVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 261 ~~~----------~~~--g~-------~-~~~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
..+ ... |. . ...++.++..... ..+.||+|||+|.+... . +..+.+|
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------~---~~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------D---DDLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------C---cHHHHhH
Confidence 321 111 11 1 1123444544432 45689999999999511 1 1356666
Q ss_pred HHhhcCC-CCCCCeEEEeccCCCC---CCchhhcCCCccc-cccccCCCCHHHHHHHHHHHhhcc-c---CCCCcchhHH
Q 005738 320 LVEMDGF-GTTAGVVVLAGTNRPD---ILDKALLRPGRFD-RQITIDKPDIKGRDQIFQIYLKKL-K---LDNEPSFYSQ 390 (680)
Q Consensus 320 L~~md~~-~~~~~ViVIaaTN~~~---~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~~-~---l~~~~d~~l~ 390 (680)
+...+.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.+++.. . ++.+.-..+.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 6552211 1235788899999875 57888877 775 678999999999999999988631 1 1111111123
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 391 RLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 391 ~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
.++..+.|. .+.+.++|+.|+..|..+++..|+.+|+..|++.+
T Consensus 231 ~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 344455563 45566789999988988888899999999999875
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4e-15 Score=167.49 Aligned_cols=213 Identities=16% Similarity=0.243 Sum_probs=153.8
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL------------ 254 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i------------ 254 (680)
...+|+|++|++.+.+.|...+.. .++|+++||+||||||||++|+++|+.+++.--
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 345799999999999988876542 356789999999999999999999998865311
Q ss_pred Eeechhhhhh--------h--ccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHH
Q 005738 255 SMSGSDFMEM--------F--VGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLL 320 (680)
Q Consensus 255 ~is~s~~~~~--------~--~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL 320 (680)
.-+|..+.+. - ...+...++.+++.+... ...|++|||+|.+. ...++.|+
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls---------------~~a~naLL 149 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS---------------KGAFNALL 149 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------------HHHHHHHH
Confidence 0111111110 0 112345678888777532 24699999999882 13567778
Q ss_pred HhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCC
Q 005738 321 VEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFA 400 (680)
Q Consensus 321 ~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~s 400 (680)
..|+. +...+++|.+|+.++.+.+++++ |+ ..+.+..++.++..++++..+++.+...+.+ .+..|+..+.| +
T Consensus 150 k~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~G-s 222 (507)
T PRK06645 150 KTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSEG-S 222 (507)
T ss_pred HHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 77775 45677777788888899999988 77 5788999999999999999998776555433 35678888776 7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 401 GADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 401 gadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
.+++.++++.++..+.. ....||.+++.+.+.
T Consensus 223 lR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 223 ARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 88888888887655421 233688888877653
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=2.1e-15 Score=179.93 Aligned_cols=218 Identities=21% Similarity=0.290 Sum_probs=150.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
-++++++|.++...++.++ |.... ..+++|+||||||||++|+.+|... +..++.++.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~---l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDI---LLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHHHHHHHHH---HhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 4789999999865554443 32222 2578999999999999999999875 244777777
Q ss_pred hhhhh--hhccCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 259 SDFME--MFVGVGPSRVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 259 s~~~~--~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
+.+.. .+.|..+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .. |-|+-.+ .++.+.+|
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d-~~---n~Lkp~l----~~G~l~~I 320 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD-AA---NLLKPAL----ARGELRTI 320 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc-HH---HHhhHHh----hCCCeEEE
Confidence 77653 5778888999999999875 467999999999997654321 1122 11 2232222 45679999
Q ss_pred eccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCC---cchhHHHHHhhCCCCC-----HH
Q 005738 336 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNE---PSFYSQRLAALTPGFA-----GA 402 (680)
Q Consensus 336 aaTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~---~d~~l~~la~~t~G~s-----ga 402 (680)
+||+..+ .+|+||.| || ..|.|+.|+.+++.+||+.+.+.+..... .+..+..++..+.+|. +.
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9998653 48999999 99 58999999999999998776654432222 1333566777776654 34
Q ss_pred HHHHHHHHHHHHHHHh-cCCcccHHHHHHHH
Q 005738 403 DIANVCNEAALIAARN-ESAQITMQHFEAAI 432 (680)
Q Consensus 403 dL~~lv~eAa~~a~r~-~~~~It~~d~~~Al 432 (680)
..-.|+.+|+.....+ ....+..+++.+.+
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5557788876554432 34455555555444
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.65 E-value=2.9e-15 Score=165.84 Aligned_cols=240 Identities=20% Similarity=0.313 Sum_probs=154.9
Q ss_pred Ccccccc-cccchH--HHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeec
Q 005738 187 DKVFFKD-VAGCDE--AKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSG 258 (680)
Q Consensus 187 ~~~~f~d-v~G~~~--~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~ 258 (680)
+..+|++ ++|.+. +...++++ ...+ .....+++||||||||||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~---~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAV---AENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHH---HhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4668999 556432 22222222 2222 1234578999999999999999999987 578999999
Q ss_pred hhhhhhhccCch-hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 259 SDFMEMFVGVGP-SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 259 s~~~~~~~g~~~-~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
.+|...+..... ..+.. |..... .+++|+|||+|.+..+ +..+..+..++..+- .....+||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~dlLiiDDi~~l~~~----------~~~~~~l~~~~n~~~---~~~~~iiits 239 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEE-FKEKYR-SVDLLLIDDIQFLAGK----------ERTQEEFFHTFNALH---ENGKQIVLTS 239 (405)
T ss_pred HHHHHHHHHHHHcCCHHH-HHHHHH-hCCEEEEehhhhhcCC----------HHHHHHHHHHHHHHH---HCCCCEEEec
Confidence 888765432211 11222 222222 3579999999998432 112233333333321 2334466666
Q ss_pred cCCCCC---CchhhcCCCcccc--ccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 005738 338 TNRPDI---LDKALLRPGRFDR--QITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAA 412 (680)
Q Consensus 338 TN~~~~---LD~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa 412 (680)
+..|.. +++.+.+ ||.. .+.++.|+.++|.+|++..++..++..+.+ .++.||.+..+ +.++|..+++...
T Consensus 240 ~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 240 DRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDE-VLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 666654 5678887 8864 789999999999999999998776655443 35778877765 6789999999876
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccc
Q 005738 413 LIAARNESAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWF 467 (680)
Q Consensus 413 ~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~ 467 (680)
..+.. .+..||.+.+.+++...+.. .++.+..+++-++|..++
T Consensus 316 ~~a~~-~~~~it~~~~~~~L~~~~~~-----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 316 AYASL-TGKPITLELAKEALKDLLRA-----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHHHH-hCCCCCHHHHHHHHHHhccc-----------cCCCCCHHHHHHHHHHHc
Confidence 66654 44679999999988754321 122355666666666543
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.9e-15 Score=168.38 Aligned_cols=203 Identities=16% Similarity=0.212 Sum_probs=148.8
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------- 252 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------------- 252 (680)
..-+|+||+|++.+++.|...+.. .++|+.+||+||||||||++|+++|+.+++.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 445899999999999999888753 3467789999999999999999999988653
Q ss_pred ----------eEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHH
Q 005738 253 ----------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQ 318 (680)
Q Consensus 253 ----------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~ 318 (680)
++.+++++ ..+-..+|.+.+.+... ...|++|||+|.|.. ...|.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~na 138 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNA 138 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHH
Confidence 23333221 12344567777665431 236999999999832 34677
Q ss_pred HHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 319 LLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 319 LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
||..|+. +...+++|.+|+.+..+.+.+++ |+ ..+.+..++.++..+.++..+++.+...+.+ .+..++..+.|
T Consensus 139 LLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~s~G 212 (509)
T PRK14958 139 LLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARAANG 212 (509)
T ss_pred HHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 8888876 34567777777888888888888 77 6788999999998888888888766554433 24677777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 399 FAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 399 ~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.+++..+... +...|+.+++...+
T Consensus 213 -slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 213 -SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred -cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 778888888776432 34568888887665
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.65 E-value=2.4e-15 Score=168.79 Aligned_cols=222 Identities=19% Similarity=0.291 Sum_probs=147.4
Q ss_pred CCcccccccc-cchH--HHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEee
Q 005738 186 KDKVFFKDVA-GCDE--AKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMS 257 (680)
Q Consensus 186 ~~~~~f~dv~-G~~~--~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is 257 (680)
.+..+|++.+ |... +...++++.. ++ + ....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~---~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAE---NP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHh---Cc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3566899954 4322 3333333322 22 1 223579999999999999999999987 56789999
Q ss_pred chhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 258 GSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 258 ~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
+.+|...+..........-|..... .+++|+|||+|.+..++ ..++.+..++..+- .....+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~l~---~~~~~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE----------RTQEEFFHTFNALH---EAGKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHH---HCCCcEEEEC
Confidence 9988766543322111122332222 46899999999984321 12223333333221 2234466666
Q ss_pred cCCCCC---CchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 005738 338 TNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAA 412 (680)
Q Consensus 338 TN~~~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa 412 (680)
+..|.. +++.|.+ ||. ..+.+..|+.++|.+|++..+...++..+.+. ++.||....| +.++|..+++...
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHH
Confidence 666654 6788888 896 47899999999999999999987655544443 5778887765 7788999998876
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHh
Q 005738 413 LIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 413 ~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
..+... +..||.+.+.+++...+
T Consensus 328 ~~~~~~-~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 328 AYASLT-GKPITLELAKEALKDLL 350 (450)
T ss_pred HHHHhh-CCCCCHHHHHHHHHHhh
Confidence 665544 45699999999998754
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.2e-15 Score=170.16 Aligned_cols=210 Identities=19% Similarity=0.282 Sum_probs=150.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE--Eeech-----
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL--SMSGS----- 259 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i--~is~s----- 259 (680)
...+|+||+|++.+++.|...+.. .++++++||+||+|||||++|+++|+.++++-. ...|.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 445899999999999999887663 356789999999999999999999998765311 00111
Q ss_pred ---------hhhhh--hccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 260 ---------DFMEM--FVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 260 ---------~~~~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
++.+. -...+...+|.++..+.. ....|++|||+|.|. ....+.||+.|+
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls---------------~~A~NALLKtLE 144 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS---------------KSAFNAMLKTLE 144 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC---------------HHHHHHHHHHHH
Confidence 11000 012234567777766532 234699999999872 134677888887
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. ....+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....|+..+++.++..+.+ .+..|++.+.| +.+++
T Consensus 145 E--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-slRdA 217 (709)
T PRK08691 145 E--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SMRDA 217 (709)
T ss_pred h--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CHHHH
Confidence 6 34567777788888888888887 88 6788899999999999999998776655443 25678877765 77888
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
.+++..+... +...|+.+++...+.
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 8888776543 344688887776653
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.3e-15 Score=169.27 Aligned_cols=203 Identities=20% Similarity=0.293 Sum_probs=147.8
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------------- 253 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~------------- 253 (680)
...+|+||+|++.+++.|...+.. .++++.+||+||+|+|||++|+++|+.+++..
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 446899999999999998877763 34677889999999999999999999887631
Q ss_pred -----------EEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHH
Q 005738 254 -----------LSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQ 318 (680)
Q Consensus 254 -----------i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~ 318 (680)
+.+++++ ..+-..+|++.+.+.. ....|+||||+|.|. ....|.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls---------------~~a~NA 138 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS---------------RHSFNA 138 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC---------------HHHHHH
Confidence 1122111 1123456776666543 234699999999982 246788
Q ss_pred HHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 319 LLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 319 LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
||+.|+. +..++++|.+|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..+...++..+.+ .+..|+..+.|
T Consensus 139 LLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~s~G 212 (647)
T PRK07994 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARAADG 212 (647)
T ss_pred HHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 8888876 45677777778888999999998 87 7899999999999999998887665544433 34667877776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 399 FAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 399 ~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.++..+++..+... +...|+.+++...+
T Consensus 213 -s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 213 -SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 677888888765432 33457777776654
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7.1e-15 Score=171.27 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=138.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE-------Ee-ec
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-------SM-SG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i-------~i-s~ 258 (680)
...+|+||+|++.+++.|+..+.. .++|+.+||+||||||||++||++|+.+++.-. .+ +|
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 446899999999999998877652 246778899999999999999999999876411 00 11
Q ss_pred hhhhhh-----h-c----cCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFMEM-----F-V----GVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~~-----~-~----g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
-.+... + + ..+-..+|.+.+.+.. ....|+||||+|.|. ...+|.||+.|+
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKtLE 144 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKTLE 144 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHHHh
Confidence 111110 0 0 1123456666655542 234699999999982 246788888888
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +..++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+...++..+.+ .+..|+..+.| +.+++
T Consensus 145 E--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~R~A 217 (944)
T PRK14949 145 E--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SMRDA 217 (944)
T ss_pred c--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 6 45567777778888889899988 87 6799999999999999998887655443332 35678888776 66788
Q ss_pred HHHHHHHH
Q 005738 405 ANVCNEAA 412 (680)
Q Consensus 405 ~~lv~eAa 412 (680)
.++|..+.
T Consensus 218 LnLLdQal 225 (944)
T PRK14949 218 LSLTDQAI 225 (944)
T ss_pred HHHHHHHH
Confidence 88887665
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.8e-15 Score=164.04 Aligned_cols=202 Identities=17% Similarity=0.260 Sum_probs=151.0
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC----------------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 251 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~---------------- 251 (680)
..+|+||+|++.+++.|...+.. .++|+++||+||||+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 45899999999999988876542 356889999999999999999999987643
Q ss_pred --------CeEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 252 --------PFLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 252 --------~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
.++.+++++ ..+-..+|.+.+.+... ...|++|||+|.|. ...+|.|
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls---------------~~A~NaL 136 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS---------------NSAFNAL 136 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC---------------HHHHHHH
Confidence 233333322 12345678777776432 34699999999882 1357888
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
+..|+. +...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+++.+...+.+. +..|+..+.|
T Consensus 137 LK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eA-L~lIa~~s~G- 209 (491)
T PRK14964 137 LKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEES-LKLIAENSSG- 209 (491)
T ss_pred HHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 888887 44567777778888889999988 77 66899999999999999999887766554443 5677887765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.+++..+...+ ...||.+++.+.+
T Consensus 210 slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7788888888766543 2478988887754
No 75
>PRK06893 DNA replication initiation factor; Validated
Probab=99.63 E-value=1.6e-14 Score=147.89 Aligned_cols=212 Identities=10% Similarity=0.078 Sum_probs=133.2
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM 262 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~ 262 (680)
.+..+|++.+|.+... .+....+.. . ......++|+||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~------~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNF------I---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHh------h---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567899999766432 111111111 1 1112357999999999999999999886 4455555554321
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
. .....++... .+++|+|||++.+.. +...+..+..++..+.. ....++|++++..|.
T Consensus 80 ~--------~~~~~~~~~~--~~dlLilDDi~~~~~----------~~~~~~~l~~l~n~~~~--~~~~illits~~~p~ 137 (229)
T PRK06893 80 Y--------FSPAVLENLE--QQDLVCLDDLQAVIG----------NEEWELAIFDLFNRIKE--QGKTLLLISADCSPH 137 (229)
T ss_pred h--------hhHHHHhhcc--cCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChH
Confidence 1 1112233322 457999999998832 22334455555554321 122345566666676
Q ss_pred CCc---hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Q 005738 343 ILD---KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 343 ~LD---~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~ 419 (680)
.++ +.|.+..+++..+.++.|+.++|.+|++..+...++..+.+. ++.|+.+.+| +.+.+.++++.... +....
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~-~~~~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDK-ASLQA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHH-HHHhc
Confidence 654 788884445678899999999999999988876665554443 5678887775 66777777776543 33343
Q ss_pred CCcccHHHHHHHH
Q 005738 420 SAQITMQHFEAAI 432 (680)
Q Consensus 420 ~~~It~~d~~~Al 432 (680)
++.||...+++++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 4579998888775
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=7.6e-15 Score=163.82 Aligned_cols=224 Identities=13% Similarity=0.191 Sum_probs=145.0
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSD 260 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~ 260 (680)
.+..+|++.+-.+.-............++. ...+++||||||||||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 356789997733332222222222222221 13569999999999999999999976 46788999998
Q ss_pred hhhhhccCc-hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 261 FMEMFVGVG-PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 261 ~~~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
|...+...- ...+.. |.......+++|+|||++.+.++. ..+..+..++..+. .....+|+++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~----------~~q~elf~~~n~l~---~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT----------GVQTELFHTFNELH---DSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH----------HHHHHHHHHHHHHH---HcCCeEEEECCC
Confidence 876653221 112222 333333467899999999884321 11122222222221 233456666666
Q ss_pred CCCC---CchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 340 RPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 340 ~~~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
.|.. +++.+.+ ||. ..+.+.+|+.+.|.+|++..+...++..+.+. ++.|+....| +.++|..+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6665 4567777 774 47789999999999999999886555544433 5778887765 678899888876555
Q ss_pred HHHhcCCcccHHHHHHHHHHHh
Q 005738 415 AARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~~v~ 436 (680)
+... +..||.+.+.+++...+
T Consensus 313 ~~~~-~~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 313 KETT-GEEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHh-CCCCCHHHHHHHHHHHh
Confidence 5444 45799999999987654
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.4e-14 Score=165.96 Aligned_cols=209 Identities=17% Similarity=0.235 Sum_probs=147.9
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe------E------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------L------ 254 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~------i------ 254 (680)
...+|+||+|++.+++.|.+.+.. .+.|+.+||+||+|||||++|+++|+.+++.- .
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 345899999999999999887763 34577889999999999999999999886520 0
Q ss_pred -Eeechh--------hhhhh--ccCchhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 255 -SMSGSD--------FMEMF--VGVGPSRVRSLFQEARQCA----PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 255 -~is~s~--------~~~~~--~g~~~~~vr~lf~~A~~~~----P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
.-+|.. +.+.- ...+-..+|++.+.+.... ..|++|||+|.|.. ...|.|
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~NaL 144 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFNAM 144 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHHHH
Confidence 001111 11100 0123346777777654322 35999999999832 346788
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
|..++. +...+++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+.+.+...+.+ .+..|+..+.|
T Consensus 145 LKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~G- 217 (618)
T PRK14951 145 LKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAARG- 217 (618)
T ss_pred HHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888876 45567777777788888888888 77 7889999999999999999888766655433 35678887776
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.+++..+... +...|+.+++...+
T Consensus 218 slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 218 SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 777888877665433 34568888777654
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.8e-14 Score=162.64 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=144.9
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------- 252 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------------- 252 (680)
...+|+||+|++.+++.|+..+.. .++|+.+||+||||||||++|+++|+.+.+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 345799999999999999888764 2457778999999999999999999987541
Q ss_pred ---------eEEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 253 ---------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 253 ---------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
++.++.++ ..+...+|++...+.. ..+.||+|||+|.+. ...++.|
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naL 136 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNAL 136 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHHHH
Confidence 22222221 1233456666555443 245799999998772 2357788
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
+..++. +...+++|.+||.+..+.+.+.+ |+ ..+.|..|+.++..+.++..+++.+...+.+ .+..|+..+.|
T Consensus 137 Lk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s~G- 209 (504)
T PRK14963 137 LKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLADG- 209 (504)
T ss_pred HHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888876 34466777778888999999988 77 4789999999999999999998776655433 25677777765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.++++.+.. . ...||.+++...+
T Consensus 210 dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 210 AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 44556566555422 1 3468888877764
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.61 E-value=1.8e-14 Score=159.90 Aligned_cols=199 Identities=27% Similarity=0.383 Sum_probs=141.0
Q ss_pred ccccccccchHHHHH---HHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 189 VFFKDVAGCDEAKQE---IMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~---L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
.+|+|++|++.+... |..++.. . .+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~---~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~---- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA---G---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS---- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc---C---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc----
Confidence 479999999998766 6655532 1 24579999999999999999999999999999987642
Q ss_pred ccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc--C
Q 005738 266 VGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT--N 339 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT--N 339 (680)
+...++.+++.+.. ....||||||+|.+.. . ..+.|+..++. ..+++|++| |
T Consensus 73 ---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------~---~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------A---QQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------H---HHHHHHHHhhc----CcEEEEEeCCCC
Confidence 33456677776642 2468999999998832 1 23445555542 446666654 3
Q ss_pred CCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc--C-CCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 340 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK--L-DNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 340 ~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~--l-~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
....++++|++ |+ ..+.+++|+.++...+++..+.... . ..+ +..++.++..+.| ..+.+.+++..++..
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~~~-- 203 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAALG-- 203 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHc--
Confidence 34578999999 88 7889999999999999998876532 1 222 2234667777755 455666666655432
Q ss_pred HhcCCcccHHHHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 417 r~~~~~It~~d~~~Al~~v 435 (680)
...|+.+++..++...
T Consensus 204 ---~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 ---VDSITLELLEEALQKR 219 (413)
T ss_pred ---cCCCCHHHHHHHHhhh
Confidence 4579999999988764
No 80
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.2e-14 Score=164.24 Aligned_cols=204 Identities=19% Similarity=0.302 Sum_probs=149.8
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------------
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP------------- 252 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~------------- 252 (680)
....+|+||+|++.+++.|++.+.. .++++.+||+||+|||||++|+.+|+.++++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3456899999999999999887763 2456789999999999999999999987542
Q ss_pred -----------eEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHH
Q 005738 253 -----------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLN 317 (680)
Q Consensus 253 -----------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~ 317 (680)
++.++++ .+.+...+|++...+... ...|++|||+|.|. ....|
T Consensus 79 C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt---------------~~a~n 137 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS---------------TGAFN 137 (559)
T ss_pred HHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------------HHHHH
Confidence 2222221 123445678887776532 24699999999882 23577
Q ss_pred HHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCC
Q 005738 318 QLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTP 397 (680)
Q Consensus 318 ~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~ 397 (680)
.||..++. +...+++|.+|+.++.+.+.+++ |+ ..+.|..|+..+....++..+++.+...+.+ .+..++..+.
T Consensus 138 aLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~s~ 211 (559)
T PRK05563 138 ALLKTLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARAAE 211 (559)
T ss_pred HHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 88888876 45567777777888999999988 87 4678999999999999999888766655433 2467787776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 398 GFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 398 G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
| +.+++.+++..+... +...|+.+++...+
T Consensus 212 G-~~R~al~~Ldq~~~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 212 G-GMRDALSILDQAISF----GDGKVTYEDALEVT 241 (559)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCCCHHHHHHHh
Confidence 6 777888888766543 24468888776653
No 81
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.61 E-value=4.3e-14 Score=143.48 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=136.3
Q ss_pred Cccccccccc--chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 187 DKVFFKDVAG--CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 187 ~~~~f~dv~G--~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
...+|++.++ .+.+.+.+++++. ...+.+++|+||||||||++|+++++++ +.++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3457888763 4445666655532 1235789999999999999999999876 578999999887
Q ss_pred hhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 262 MEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.... ..++.... .+.+|+|||+|.+.. +......+..++..+.. ....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~----------~~~~~~~L~~~l~~~~~---~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG----------QPEWQEALFHLYNRVRE---AGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHHH---cCCeEEEECCCCh
Confidence 5422 23333222 346999999998832 11223344445444322 2234555444444
Q ss_pred CCCc---hhhcCCCcc--ccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 342 DILD---KALLRPGRF--DRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 342 ~~LD---~aLlRpgRf--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
..++ +.|.+ |+ ..++.+++|+.+++..+++.++.+.+...+.+. +..|+...+ -+.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~~-gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 4332 67776 66 468899999999999999988776555444433 467777644 478999999998765554
Q ss_pred HhcCCcccHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAI 432 (680)
Q Consensus 417 r~~~~~It~~d~~~Al 432 (680)
+ ++..|+.+.+.+.+
T Consensus 211 ~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 A-AKRKITIPFVKEVL 225 (226)
T ss_pred H-hCCCCCHHHHHHHh
Confidence 4 44579988877664
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.61 E-value=3.7e-14 Score=152.57 Aligned_cols=207 Identities=19% Similarity=0.267 Sum_probs=135.7
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~-----~~~i~is~s~~~ 262 (680)
..+|++++|.+++++.|..++.. + .+.+++|+||||||||++|+++++++. .+++.++++++.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~---~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS---P---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC---C---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 34699999999999998887652 1 123689999999999999999999873 457888887764
Q ss_pred hhh-------------ccC-------chhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHH
Q 005738 263 EMF-------------VGV-------GPSRVRSLFQEARQC-----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLN 317 (680)
Q Consensus 263 ~~~-------------~g~-------~~~~vr~lf~~A~~~-----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~ 317 (680)
... .+. ....++.+.+..... .+.+|+|||+|.+.. ..+ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------~~~---~ 143 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------DAQ---Q 143 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------------HHH---H
Confidence 221 011 012233333333222 246999999998821 222 3
Q ss_pred HHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCC
Q 005738 318 QLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTP 397 (680)
Q Consensus 318 ~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~ 397 (680)
.|+..++.... ...+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++..++++..+++.+...+.+ .+..++..+.
T Consensus 144 ~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~~~ 217 (337)
T PRK12402 144 ALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYYAG 217 (337)
T ss_pred HHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 34444444322 23344455556677777877 66 5788999999999999999988776654433 3567777774
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 398 GFAGADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 398 G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
| |++.+++.....+. ....||.+++.+++.
T Consensus 218 g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 218 G----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred C----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 4 56666665444332 334799999888653
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.4e-14 Score=162.87 Aligned_cols=210 Identities=18% Similarity=0.233 Sum_probs=147.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE--Eeec---hh-
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL--SMSG---SD- 260 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i--~is~---s~- 260 (680)
...+|+||+|++.+++.|...+.. .++++.+||+||||+|||++|+++|+.+++..- .-.| ..
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 345899999999999998887663 345678899999999999999999998865311 0011 10
Q ss_pred ----------hhhh--hccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 261 ----------FMEM--FVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 261 ----------~~~~--~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
+... -...+...+|.+...+... ...|++|||+|.+. ....|.||..++
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls---------------~~a~naLLK~LE 144 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS---------------KSAFNAMLKTLE 144 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC---------------HHHHHHHHHHHh
Confidence 0000 0012334577777766432 23699999999882 135678888887
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +...+++|.+|+.+..+.+.+++ |+ ..+.|..++.++..+.+...+.+.+...+.+ .+..++..+.| +.+++
T Consensus 145 e--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr~a 217 (527)
T PRK14969 145 E--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMRDA 217 (527)
T ss_pred C--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 6 44567777777778888888887 87 7899999999999998888887665544333 24667777655 67788
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
.+++..+... +...|+.+++...+.
T Consensus 218 l~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 218 LSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 8888776533 355688887776553
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=6.2e-14 Score=154.42 Aligned_cols=224 Identities=19% Similarity=0.165 Sum_probs=151.5
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhhh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDFM-- 262 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~~-- 262 (680)
..+.++|-++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 456789999988888887754211 1235679999999999999999999876 5778999885432
Q ss_pred --------hhhcc-------Cchh-HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 263 --------EMFVG-------VGPS-RVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 263 --------~~~~g-------~~~~-~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
..+.+ .... .+..+.+.... ..+.||+|||+|.+.... ....+..|+..++.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-----------CchHHHHHHHhhhc
Confidence 22222 1111 12223333332 346899999999996211 12467777766665
Q ss_pred CCCCCCeEEEeccCCCC---CCchhhcCCCccc-cccccCCCCHHHHHHHHHHHhhcccCC-CCcchhHHHHHhhCCCC-
Q 005738 326 FGTTAGVVVLAGTNRPD---ILDKALLRPGRFD-RQITIDKPDIKGRDQIFQIYLKKLKLD-NEPSFYSQRLAALTPGF- 399 (680)
Q Consensus 326 ~~~~~~ViVIaaTN~~~---~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~~~d~~l~~la~~t~G~- 399 (680)
.. ..++.+|+++|..+ .+++.+.+ ||. ..+.+++++.++..+|++.+++.-... .-.+..++.+++.+.+.
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 43 23688888888654 56777766 663 578999999999999999888642111 11222345566665332
Q ss_pred -CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 400 -AGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 400 -sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
..+.+.++|..|+..|..+++..|+.+|+..|++++
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 235556888889888888888999999999999876
No 85
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1e-14 Score=174.47 Aligned_cols=167 Identities=22% Similarity=0.360 Sum_probs=126.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
-++++++|.+...+++.++ |.... ..+++|+||||||||++|+++|..+ +.+++.++.
T Consensus 175 ~~l~~vigr~~ei~~~i~i---L~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQV---LQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHHHHHHHHH---HhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 3689999998865444444 33222 2578999999999999999999987 678888888
Q ss_pred hhhh--hhhccCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 259 SDFM--EMFVGVGPSRVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 259 s~~~--~~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
+.+. .+|.|..+.+++.+|..+.. ..|+||||||+|.|.+.++. .++ ......+...+ .++.+.+|
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~-~d~~~~lkp~l-------~~g~l~~I 311 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGA-MDAGNMLKPAL-------ARGELHCV 311 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccc-hhHHHHhcchh-------hcCCCeEE
Confidence 8776 45788889999999998654 56899999999999765422 111 12223333222 46789999
Q ss_pred eccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccC
Q 005738 336 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKL 381 (680)
Q Consensus 336 aaTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l 381 (680)
++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+.+.+..
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 9999876 48999999 997 5889999999999999887765443
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=99.60 E-value=3.9e-14 Score=152.05 Aligned_cols=199 Identities=19% Similarity=0.188 Sum_probs=134.2
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----CeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV-----PFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~-----~~i~is~s~~~ 262 (680)
+.+|+|++|++++++.|+.++.. ...| ++||+||||||||++|+++|+++.. .++.++.++..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 35799999999999998877552 1223 5899999999999999999998732 35666665532
Q ss_pred hhhccCchhHHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 263 EMFVGVGPSRVRSLFQEARQ-------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~-------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
+...++........ ..+.|++|||+|.+.. .. .+.|+..|+.+. ....+|
T Consensus 77 ------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------~a---q~aL~~~lE~~~--~~t~~i 133 (319)
T PLN03025 77 ------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------GA---QQALRRTMEIYS--NTTRFA 133 (319)
T ss_pred ------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------HH---HHHHHHHHhccc--CCceEE
Confidence 12234444332211 2357999999999832 12 244455555432 334566
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.+||.+..+.++|++ |+ ..+.|+.|+.++....++..+++.+...+.+. +..++....| |++.+++.....+
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~-l~~i~~~~~g----DlR~aln~Lq~~~ 205 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG-LEAIIFTADG----DMRQALNNLQATH 205 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----CHHHHHHHHHHHH
Confidence 677888888889988 77 57899999999999999999887766554433 5677776654 6666666543222
Q ss_pred HHhcCCcccHHHHHHH
Q 005738 416 ARNESAQITMQHFEAA 431 (680)
Q Consensus 416 ~r~~~~~It~~d~~~A 431 (680)
.+...|+.+++...
T Consensus 206 --~~~~~i~~~~v~~~ 219 (319)
T PLN03025 206 --SGFGFVNQENVFKV 219 (319)
T ss_pred --hcCCCCCHHHHHHH
Confidence 23456887776643
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=4.5e-14 Score=153.18 Aligned_cols=203 Identities=19% Similarity=0.323 Sum_probs=145.5
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 252 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~--------------- 252 (680)
..+|+|++|++.+++.|.+.+.. .+.|+.+||+||||+|||++|+++++.+.++
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 46899999999999999887652 2457789999999999999999999987543
Q ss_pred ---------eEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 253 ---------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 253 ---------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
++.+++.+ ..+...++.+++.+... ...||+|||+|.+.. ...+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~L 137 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNAL 137 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHHH
Confidence 22222211 11334567777766432 235999999998821 346777
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
+..++. +...+++|.+|+.++.+.+++++ |+ ..+.+++|+..+..++++.+++..+...+.+ .+..++..+.|
T Consensus 138 l~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~~~g- 210 (355)
T TIGR02397 138 LKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARAADG- 210 (355)
T ss_pred HHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 887766 34567777778888888899988 87 5789999999999999999998776544433 34667777755
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
+.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 211 ~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 5566666666555432 24599999987763
No 88
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=5.2e-14 Score=150.48 Aligned_cols=198 Identities=20% Similarity=0.261 Sum_probs=131.2
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
+.+|+|++|++++++.+..++.. .+.|+.+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~--- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR--- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc---
Confidence 45899999999999999888752 235677788999999999999999999999999999876 11
Q ss_pred CchhHHHHHHHHH---H--hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 268 VGPSRVRSLFQEA---R--QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 268 ~~~~~vr~lf~~A---~--~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
...++...... . ...+++|+|||+|.+.. ...+..+..++ +.. ..++.+|.+||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~~L~~~l---e~~--~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------ADAQRHLRSFM---EAY--SKNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------HHHHHHHHHHH---Hhc--CCCceEEEEcCChh
Confidence 11222211111 1 12468999999998721 12233444444 432 34567888999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcc-------cCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL-------KLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-------~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.+++++++ || ..+.++.|+.+++.++++.++... +...+.+ .+..++....| |++.+++.....+
T Consensus 143 ~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 88 478999999999988877654332 2222111 23555554443 5566665544333
Q ss_pred HHhcCCcccHHHHHH
Q 005738 416 ARNESAQITMQHFEA 430 (680)
Q Consensus 416 ~r~~~~~It~~d~~~ 430 (680)
. ...++.+++..
T Consensus 215 ~---~~~i~~~~l~~ 226 (316)
T PHA02544 215 S---TGKIDAGILSE 226 (316)
T ss_pred c---cCCCCHHHHHH
Confidence 2 24577666544
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=1.5e-13 Score=140.08 Aligned_cols=203 Identities=12% Similarity=0.147 Sum_probs=134.8
Q ss_pred CCccccccccc--chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 005738 186 KDKVFFKDVAG--CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD 260 (680)
Q Consensus 186 ~~~~~f~dv~G--~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~ 260 (680)
....+|+++++ .+.+...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34578999773 3455555555433 22345689999999999999999999875 77889999877
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCe-EEEeccC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV-VVLAGTN 339 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~V-iVIaaTN 339 (680)
+.... . ....+.+|+|||+|.+.. ..+..+..++..+. ..... ++++++.
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~------------~~~~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDD------------AQQIALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCc------------hHHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 64321 1 122457999999998721 22334444544432 23343 4444443
Q ss_pred CCC--CCchhhcCCCcc--ccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 340 RPD--ILDKALLRPGRF--DRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 340 ~~~--~LD~aLlRpgRf--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.|. .+.+.|.+ || ...+.+++|+.+++..+++.+....++..+.+. ++.|+...+| +.+++.++++.-...+
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 332 34567776 76 468899999999999999988776665554443 5677776555 7788888888754434
Q ss_pred HHhcCCcccHHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAID 433 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al~ 433 (680)
...+..||...+.+++.
T Consensus 208 -~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 -LEQKRPVTLPLLREMLA 224 (227)
T ss_pred -HHhCCCCCHHHHHHHHh
Confidence 34557899998888764
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3.1e-14 Score=156.18 Aligned_cols=192 Identities=20% Similarity=0.278 Sum_probs=130.3
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE-Eeec----------
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-SMSG---------- 258 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i-~is~---------- 258 (680)
.|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|+.+.+.-- ...|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999875322 233456668999999999999999999999997654310 0001
Q ss_pred ----hhhh--hh-hccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 005738 259 ----SDFM--EM-FVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG 327 (680)
Q Consensus 259 ----s~~~--~~-~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~ 327 (680)
.++. .. -...+-..+|.+++.+... ...|+||||+|.+.. ...|.||+.|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~LEep- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKAVEEP- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHHhhcC-
Confidence 0100 00 0112335678888877542 236999999999932 2347778877763
Q ss_pred CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHH
Q 005738 328 TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANV 407 (680)
Q Consensus 328 ~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~l 407 (680)
..++++|.+|+.++.|.|++++ |+ ..+.|++|+.++..+++.... +.+ . .....++..+.|..+..+.-+
T Consensus 145 -~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~--~-~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 -PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD--P-ETARRAARASQGHIGRARRLA 214 (394)
T ss_pred -CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC--H-HHHHHHHHHcCCCHHHHHHHh
Confidence 3445555555558999999998 88 689999999988877776322 222 1 223568888888877665544
Q ss_pred HH
Q 005738 408 CN 409 (680)
Q Consensus 408 v~ 409 (680)
.+
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 43
No 91
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=6e-14 Score=159.39 Aligned_cols=222 Identities=17% Similarity=0.241 Sum_probs=145.8
Q ss_pred CcccccccccchH---HHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeec
Q 005738 187 DKVFFKDVAGCDE---AKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~---~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~ 258 (680)
...+|++++.-.. +...++.+++ ++. .....++|||++|||||+|++|+++++ +..++++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4678999764332 2223333322 221 122458999999999999999999976 567899999
Q ss_pred hhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 259 SDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 259 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
.+|.+.+...........|.... ..+++|+||||+.+..+ +..+..+..++..+. .+.+-+||++.
T Consensus 353 eef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk----------e~tqeeLF~l~N~l~---e~gk~IIITSd 418 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK----------ESTQEEFFHTFNTLH---NANKQIVLSSD 418 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC----------HHHHHHHHHHHHHHH---hcCCCEEEecC
Confidence 99887664332222222344322 34689999999988432 222333333443332 22333555443
Q ss_pred CCCC---CCchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005738 339 NRPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 339 N~~~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~ 413 (680)
..|. .+++.|.+ ||. ..+.+..||.+.|.+||+.++...++..+.+. ++.|+.+..+ +.++|..+++....
T Consensus 419 ~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a 494 (617)
T PRK14086 419 RPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTA 494 (617)
T ss_pred CChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHH
Confidence 3343 57888988 885 56689999999999999999988777665443 5777777654 67889888887655
Q ss_pred HHHHhcCCcccHHHHHHHHHHHhc
Q 005738 414 IAARNESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 414 ~a~r~~~~~It~~d~~~Al~~v~~ 437 (680)
.+... +..|+.+.+++++..++.
T Consensus 495 ~a~~~-~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 495 FASLN-RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHhh-CCCCCHHHHHHHHHHhhc
Confidence 55543 456999999988876543
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7e-14 Score=158.47 Aligned_cols=203 Identities=16% Similarity=0.261 Sum_probs=142.5
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------- 252 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------------- 252 (680)
...+|+||+|++.+++.|...+.. .+.++.+||+||||||||++|+++|+.+++.
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 346899999999999998877653 2456789999999999999999999987641
Q ss_pred ----------eEEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHH
Q 005738 253 ----------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQ 318 (680)
Q Consensus 253 ----------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~ 318 (680)
++.++++. ..+-..++.+.+.+.. ....|++|||+|.+. ....+.
T Consensus 80 ~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls---------------~~a~na 138 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS---------------KQSFNA 138 (546)
T ss_pred HHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc---------------HHHHHH
Confidence 12222110 1123345666655542 234699999999882 135677
Q ss_pred HHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 319 LLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 319 LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
||..|+. +...+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....++..+++.+...+.+ .+..++..+.|
T Consensus 139 LLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~G 212 (546)
T PRK14957 139 LLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAKG 212 (546)
T ss_pred HHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 7777775 34566666666778888888888 77 7899999999999999998887766544433 24667777754
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 399 FAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 399 ~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.+++..+...+ + ..|+.+++.+++
T Consensus 213 -dlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 213 -SLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred -CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 6677777777655332 2 568888888754
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.4e-14 Score=159.27 Aligned_cols=203 Identities=18% Similarity=0.274 Sum_probs=143.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------- 252 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------------- 252 (680)
...+|+||+|++.+++.|...+.. .+++..+||+||||||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 345899999999999999887753 2456789999999999999999999988653
Q ss_pred ----------eEEeechhhhhhhccCchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHH
Q 005738 253 ----------FLSMSGSDFMEMFVGVGPSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQ 318 (680)
Q Consensus 253 ----------~i~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~ 318 (680)
++.++++. ..+-..++.+.+.+. .....||||||+|.|. ....+.
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt---------------~~a~na 138 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT---------------REAFNA 138 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC---------------HHHHHH
Confidence 22222211 112234455433332 2234699999999982 134677
Q ss_pred HHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 319 LLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 319 LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
|+..|+. +...+++|.+||.++.+.+.+++ |+ ..+.|+.++.++..++|+..+...+...+.+. +..|+..+.|
T Consensus 139 LLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~ea-l~lIA~~s~G 212 (624)
T PRK14959 139 LLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAA-VRLIARRAAG 212 (624)
T ss_pred HHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC
Confidence 8887776 34567888888888888888888 87 57899999999999999988877665444332 4667777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 399 FAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 399 ~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.+++.++. ..+...|+.+++..++
T Consensus 213 -dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 4455666666432 2345579999988776
No 94
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=9.9e-14 Score=160.35 Aligned_cols=209 Identities=21% Similarity=0.322 Sum_probs=148.9
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE---Eeechhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL---SMSGSDFME 263 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i---~is~s~~~~ 263 (680)
.+.+|+||+|++.+++.|+..+.. .++++.+||+||+|+|||++|+++|+.+.++-. .-.|..+..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 356899999999999998887753 246788999999999999999999998866321 011211110
Q ss_pred ---h----hcc-----CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 005738 264 ---M----FVG-----VGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG 327 (680)
Q Consensus 264 ---~----~~g-----~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~ 327 (680)
. +.+ .+...+|.+.+.+... ...|++|||+|.|.. ...+.||..|+.
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEE-- 144 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEE-- 144 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhc--
Confidence 0 001 2345578877776542 346999999998821 357788888886
Q ss_pred CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHH
Q 005738 328 TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANV 407 (680)
Q Consensus 328 ~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~l 407 (680)
+...+++|.+|+.++.|.+.+++ |+ .++.|.+|+.++..++++..+.+.+...+.+. +..++..+.| +.+++.++
T Consensus 145 PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eA-l~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNA-LKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHHHH
Confidence 45667777788888999999988 88 47899999999999999988877665544332 4667777765 56777777
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 408 CNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 408 v~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+..++... ...|+.+++...+
T Consensus 220 Lekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 220 AEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHhc----cCCCCHHHHHHHH
Confidence 77654332 3348888887654
No 95
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=4.7e-14 Score=168.78 Aligned_cols=201 Identities=18% Similarity=0.273 Sum_probs=145.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
-+++.++|.++..+++.+++.. +.+.+++|+||||||||++|+++|... +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 3588999999988888776542 235688999999999999999999976 467999999
Q ss_pred hhhh--hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 259 SDFM--EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 259 s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
+.+. ..|.|..+.+++.+|+.++...++||||||||.|.+..+.. + .......+... + .++.+.+|+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g-~~~~a~lLkp~---l----~rg~l~~Ig 312 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---G-AIDAANILKPA---L----ARGELQCIG 312 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---C-cccHHHHhHHH---H----hCCCcEEEE
Confidence 8877 46788889999999999988889999999999997654321 1 11222222222 2 356789999
Q ss_pred ccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc----ccCCCCcchhHHHHHhhCCCCC-----HH
Q 005738 337 GTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK----LKLDNEPSFYSQRLAALTPGFA-----GA 402 (680)
Q Consensus 337 aTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~~~d~~l~~la~~t~G~s-----ga 402 (680)
+|+..+ ..|++|.+ ||. .|.++.|+.++...|++..... .++..+ +..+..++..+.+|. +.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~-deal~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSIS-DKALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCccccCch
Confidence 998764 47999999 995 5899999999999998765432 222222 233456666666654 34
Q ss_pred HHHHHHHHHHHHHH
Q 005738 403 DIANVCNEAALIAA 416 (680)
Q Consensus 403 dL~~lv~eAa~~a~ 416 (680)
..-.++.+|+....
T Consensus 389 kaidlld~a~a~~~ 402 (821)
T CHL00095 389 KAIDLLDEAGSRVR 402 (821)
T ss_pred HHHHHHHHHHHHHH
Confidence 45567777665443
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=6.5e-14 Score=163.83 Aligned_cols=208 Identities=23% Similarity=0.283 Sum_probs=137.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
.-+|+|++|++........+...+... ...+++|+||||||||++|+++|+..+.+|+.++++..
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~------ 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA------ 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh------
Confidence 457999999999886433333333221 23478999999999999999999999999998887531
Q ss_pred CchhHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC--C
Q 005738 268 VGPSRVRSLFQEARQ-----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN--R 340 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~-----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN--~ 340 (680)
+.+.++..+..+.. ....+|||||+|.+.. . ..+.|+..++ ...+++|++|+ .
T Consensus 89 -~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~---qQdaLL~~lE----~g~IiLI~aTTenp 148 (725)
T PRK13341 89 -GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------A---QQDALLPWVE----NGTITLIGATTENP 148 (725)
T ss_pred -hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------H---HHHHHHHHhc----CceEEEEEecCCCh
Confidence 12234444444421 2457999999999832 1 1234454443 24567776653 3
Q ss_pred CCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc-------ccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005738 341 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK-------LKLDNEPSFYSQRLAALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 341 ~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~-------~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~ 413 (680)
...+++++++ |+ ..+.+++++.+++..+++..+.. .....+ +..++.|+...+| ..+.+.++++.++.
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~-deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE-PEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3468899998 65 56899999999999999998872 222222 2235677877755 55677777776654
Q ss_pred HHHHhc--CCcccHHHHHHHHHHH
Q 005738 414 IAARNE--SAQITMQHFEAAIDRV 435 (680)
Q Consensus 414 ~a~r~~--~~~It~~d~~~Al~~v 435 (680)
.+.... ...|+.+++++++.+.
T Consensus 224 ~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 224 STPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred hcccCCCCceeccHHHHHHHHHHh
Confidence 332121 2248888888887663
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=9.9e-14 Score=157.55 Aligned_cols=209 Identities=20% Similarity=0.263 Sum_probs=144.1
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-----EEeechh-
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-----LSMSGSD- 260 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~-----i~is~s~- 260 (680)
.+.+|++++|++.+++.|...+.. .+.|+++||+||+|+|||++|+++|+.+.+.- ..-.|..
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 345799999999999988876642 34578899999999999999999999875310 0011111
Q ss_pred ----------hhhh--hccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 261 ----------FMEM--FVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 261 ----------~~~~--~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
+.+. ....+-..+|.+...+... ...|++|||+|.+.. ...+.|+..|+
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKtLE 144 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKTLE 144 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHHHH
Confidence 1000 0012334577777665432 235999999998821 24567777777
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +...+++|.+|+.+..|.+++++ |+ ..+.+.+|+..+....++..+.+.+...+.+. +..++..+.| +.+++
T Consensus 145 E--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~ea-l~~La~lS~G-dlR~A 217 (605)
T PRK05896 145 E--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNA-IDKIADLADG-SLRDG 217 (605)
T ss_pred h--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHH
Confidence 6 44567777788888999999998 87 57899999999999999988877655444332 4667777765 66677
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.++++.++.. .+. .|+.+++.+.+
T Consensus 218 lnlLekL~~y---~~~-~It~e~V~ell 241 (605)
T PRK05896 218 LSILDQLSTF---KNS-EIDIEDINKTF 241 (605)
T ss_pred HHHHHHHHhh---cCC-CCCHHHHHHHh
Confidence 7777764432 232 38888887754
No 98
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.7e-15 Score=165.10 Aligned_cols=182 Identities=26% Similarity=0.435 Sum_probs=136.4
Q ss_pred ccccceeeecccCCCcccccccccchHHHHHHHHHHHH--hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 173 IGKATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHF--LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~--l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
||+++...++......+-=+|--|++++|+++.|++.- |+... --+-++|+||||+|||+++|.||+.+|
T Consensus 392 Wgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~--------qGkIlCf~GPPGVGKTSI~kSIA~ALn 463 (906)
T KOG2004|consen 392 WGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV--------QGKILCFVGPPGVGKTSIAKSIARALN 463 (906)
T ss_pred CCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC--------CCcEEEEeCCCCCCcccHHHHHHHHhC
Confidence 34444333333222233346789999999999999875 44332 235588999999999999999999999
Q ss_pred CCeEEeechhhh---------hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHH
Q 005738 251 VPFLSMSGSDFM---------EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLV 321 (680)
Q Consensus 251 ~~~i~is~s~~~---------~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~ 321 (680)
..|+.++-..+. -.|+|..+.++-+.++...-+.| +++|||||.+++.- .+++. .+||+
T Consensus 464 RkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~------qGDPa-----sALLE 531 (906)
T KOG2004|consen 464 RKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH------QGDPA-----SALLE 531 (906)
T ss_pred CceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC------CCChH-----HHHHH
Confidence 999999865433 23899999999999999988888 88899999997321 11221 23444
Q ss_pred hhcC-------------CCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhh
Q 005738 322 EMDG-------------FGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK 377 (680)
Q Consensus 322 ~md~-------------~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 377 (680)
.||- --.-+.|++|||.|..+.+++.|+. |. ..|.++-+..++..+|.+.|+-
T Consensus 532 lLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 532 LLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 3331 1123579999999999999999999 99 6899999999999999999874
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.56 E-value=2.9e-13 Score=139.14 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=133.5
Q ss_pred CCcccccccc-c-chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 005738 186 KDKVFFKDVA-G-CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD 260 (680)
Q Consensus 186 ~~~~~f~dv~-G-~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~ 260 (680)
.+..+|++.+ | ...+...+..+.. .+ .+..++|+||||||||+|++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4556788876 4 3445555544432 11 13579999999999999999999876 44566666654
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCC-eEEEeccC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAG-VVVLAGTN 339 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~-ViVIaaTN 339 (680)
.... ..++++.... ..+|+|||+|.+.. ....+..+..++..+- .+.+ .+++++++
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~----------~~~~~~~lf~l~n~~~---e~g~~~li~ts~~ 140 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG----------DELWEMAIFDLYNRIL---ESGRTRLLITGDR 140 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcC----------CHHHHHHHHHHHHHHH---HcCCCeEEEeCCC
Confidence 3221 1122222222 26899999998832 2333444544444332 1233 35666666
Q ss_pred CCCC---CchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 340 RPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 340 ~~~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
.|.. +.|.|++ |+. ..+.+.+|+.+++.++++.++...++..+.+. ++.|+.+.+| +.+.+.++++... .
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~-~ 215 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLD-R 215 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHH-H
Confidence 6665 5789998 885 78899999999999999987776655544443 5778888776 6678888888743 2
Q ss_pred HHHhcCCcccHHHHHHHH
Q 005738 415 AARNESAQITMQHFEAAI 432 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al 432 (680)
+....++.||.+.+.+++
T Consensus 216 ~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 216 ASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHhcCCCCCHHHHHHHH
Confidence 333345569998888775
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.8e-14 Score=159.64 Aligned_cols=203 Identities=15% Similarity=0.233 Sum_probs=147.4
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------------
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP------------- 252 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~------------- 252 (680)
....+|+||+|++.+++.|...+.. .++|+.+||+||+|+|||++|+++|+.++++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3456899999999999999887753 3467889999999999999999999987653
Q ss_pred -----------eEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHH
Q 005738 253 -----------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLN 317 (680)
Q Consensus 253 -----------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~ 317 (680)
++.+++++ ..+-..+|++...+... ...|++|||+|.|.. ...|
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~n 137 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFN 137 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHH
Confidence 12222111 12334677777665432 235999999998821 3567
Q ss_pred HHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCC
Q 005738 318 QLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTP 397 (680)
Q Consensus 318 ~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~ 397 (680)
.|+..|+. +..++++|.+|+.++.|.+.+++ |+ ..+.|..++..+....++..+++.+...+.+. +..++..+.
T Consensus 138 aLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~a-l~~la~~a~ 211 (576)
T PRK14965 138 ALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAA-LALVARKGD 211 (576)
T ss_pred HHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcC
Confidence 88888876 45677888888889999999988 77 57899999999999899888887766554433 567787777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 398 GFAGADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 398 G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
| +.+++.+++..+...+ + ..|+.+|+...
T Consensus 212 G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred C-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 6 5667777776554332 2 35888887655
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=5.1e-14 Score=147.13 Aligned_cols=209 Identities=24% Similarity=0.371 Sum_probs=138.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---eEEeechhhhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSMSGSDFMEM 264 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~---~i~is~s~~~~~ 264 (680)
.-+++|.+|++....+ ..++..+-... + -..++|+||||||||+|||.++....-+ |+.++...
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq~-------~-ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~---- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------R-IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN---- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHcC-------C-CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc----
Confidence 4479999999887655 33333321111 1 1468999999999999999999988666 77777643
Q ss_pred hccCchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc-
Q 005738 265 FVGVGPSRVRSLFQEARQC-----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT- 338 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~-----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT- 338 (680)
.+-+.+|++|++++.. ...||||||||.+.+.. +.+ ||-.. ..+.|++|++|
T Consensus 201 ---a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ------------QD~---fLP~V----E~G~I~lIGATT 258 (554)
T KOG2028|consen 201 ---AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ------------QDT---FLPHV----ENGDITLIGATT 258 (554)
T ss_pred ---cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh------------hhc---cccee----ccCceEEEeccc
Confidence 3456789999998652 35799999999983321 112 22221 34668888876
Q ss_pred -CCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcc--------cCCCC---c-chhHHHHHhhCCCCCHHHHH
Q 005738 339 -NRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL--------KLDNE---P-SFYSQRLAALTPGFAGADIA 405 (680)
Q Consensus 339 -N~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~--------~l~~~---~-d~~l~~la~~t~G~sgadL~ 405 (680)
|..-.|..+|++ |+ +++.+...+.+....||.+....+ ++... + +-.++.++..+.|-..+.|.
T Consensus 259 ENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 259 ENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred CCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH
Confidence 344578999999 77 678888888899888888744311 11111 1 22346778888886655554
Q ss_pred HHHHHHHHHHHHhc---CCcccHHHHHHHHHH
Q 005738 406 NVCNEAALIAARNE---SAQITMQHFEAAIDR 434 (680)
Q Consensus 406 ~lv~eAa~~a~r~~---~~~It~~d~~~Al~~ 434 (680)
.|---+.+.+.|.+ +..++.+|+.+.+.+
T Consensus 336 ~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 336 ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 43322234444544 347899999988865
No 102
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.7e-13 Score=154.35 Aligned_cols=209 Identities=19% Similarity=0.285 Sum_probs=143.7
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------eEE-eec
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------FLS-MSG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------~i~-is~ 258 (680)
...+|+|++|++.+.+.|+..+.. .++++.+||+||+|+|||++|+.+|+.+++. +-. .+|
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 345899999999999988887753 2356778999999999999999999987641 110 111
Q ss_pred hhhhh-----hh-----ccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFME-----MF-----VGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~-----~~-----~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+.. ...+.|+..++
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~LE 144 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKTLE 144 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHHHh
Confidence 11110 00 01223445666555543 2346999999998831 24567777777
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +...+++|.+|+.++.+.+++.+ |+ ..+.+.+|+..+...+++.+++..++..+.+. +..++..+.| +.+++
T Consensus 145 e--pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~a-l~~La~~s~G-~lr~a 217 (486)
T PRK14953 145 E--PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKA-LDLLAQASEG-GMRDA 217 (486)
T ss_pred c--CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHH
Confidence 6 34455666667778888888888 77 46899999999999999999987776554443 4667777765 56777
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.++++.+... +...||.+++.+++
T Consensus 218 l~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 218 ASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7777766533 24468888888765
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.5e-13 Score=150.31 Aligned_cols=210 Identities=19% Similarity=0.266 Sum_probs=141.0
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh-----
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF----- 261 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~----- 261 (680)
.+.+|+|++|++.+++.+.+.+.. .+.|+++|||||||+|||++|+++++.+..+.....+.++
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 346899999999999888877653 2457899999999999999999999987653221111100
Q ss_pred -hhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 262 -MEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 262 -~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
.+.....+...++.+++.+... .+.||+|||+|.+.. ..++.|+..++. +....++|.
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~--~~~~~~~Il 143 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEE--PPAHAIFIL 143 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhC--CCCceEEEE
Confidence 0000112235677777766432 346999999998721 245677776665 334455666
Q ss_pred ccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 337 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 337 aTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.+...+.+ .++.++..+.| +.+.+.+.++.....+
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~y~- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVTFC- 217 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhc-
Confidence 67777888889887 66 4689999999999999998888766554433 35677777654 5555555555444332
Q ss_pred HhcCCcccHHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAID 433 (680)
Q Consensus 417 r~~~~~It~~d~~~Al~ 433 (680)
+.. |+.++++..+.
T Consensus 218 --~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 --GKN-ITRQAVTENLN 231 (367)
T ss_pred --CCC-CCHHHHHHHhC
Confidence 333 88888776653
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=9.7e-14 Score=166.63 Aligned_cols=200 Identities=20% Similarity=0.303 Sum_probs=142.3
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeech
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSGS 259 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~s 259 (680)
+++.++|.++..+++.+++. .. ...+++|+||||||||++++++|... +.+++.++.+
T Consensus 171 ~~~~~igr~~ei~~~~~~l~---r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh---cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 68899999986555544432 22 23578999999999999999999875 6778888887
Q ss_pred hhh--hhhccCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 260 DFM--EMFVGVGPSRVRSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 260 ~~~--~~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
.+. ..|.|..+.+++.+|..+... .|+||||||||.|.+.+... + .. ...+.|...+ .+..+.+|+
T Consensus 239 ~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~-~~---d~~~~Lk~~l----~~g~i~~Ig 307 (852)
T TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---G-AM---DAGNMLKPAL----ARGELHCIG 307 (852)
T ss_pred HHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---c-hh---HHHHHhchhh----hcCceEEEE
Confidence 775 457888889999999998654 58999999999997543211 1 11 1222222222 456799999
Q ss_pred ccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCc---chhHHHHHhhCCCCC-----HHH
Q 005738 337 GTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEP---SFYSQRLAALTPGFA-----GAD 403 (680)
Q Consensus 337 aTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~---d~~l~~la~~t~G~s-----gad 403 (680)
+|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+.+.+.....+ +..+...+..+.+|. |..
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 999764 47999999 995 58999999999999999887766544433 223344555555543 344
Q ss_pred HHHHHHHHHHHH
Q 005738 404 IANVCNEAALIA 415 (680)
Q Consensus 404 L~~lv~eAa~~a 415 (680)
.-.|+++|+..+
T Consensus 385 Aidlld~a~a~~ 396 (852)
T TIGR03346 385 AIDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHHH
Confidence 557777776544
No 105
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=6.8e-14 Score=165.41 Aligned_cols=164 Identities=24% Similarity=0.362 Sum_probs=121.3
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh--------
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-------- 263 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-------- 263 (680)
+|..|++++|+++.+++...+... ......++|+||||||||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 359999999999998887533211 112246899999999999999999999999999888665322
Q ss_pred -hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC-----CC--------CC
Q 005738 264 -MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG-----FG--------TT 329 (680)
Q Consensus 264 -~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~-----~~--------~~ 329 (680)
.|.|....++...+..+....| |++|||||.+..... ++ ....|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~------g~-----~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR------GD-----PASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC------CC-----HHHHHHHHhccccEEEEecccccccccC
Confidence 3566666666666766654455 899999999954321 11 23455554542 11 23
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhh
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK 377 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 377 (680)
+++++|+|+|.. .++++|+. || ..|.+..++.++..+|.+.|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhh
Confidence 679999999987 59999999 99 4789999999999999999884
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=8.2e-14 Score=164.76 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=142.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE-----Eeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-----SMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i-----~is~s~~~ 262 (680)
..+|+||+|++.+++.|+..+.. .++++.+||+||+|||||++|+.+|+.+++.-- .-.|..+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 45799999999999998887763 346778999999999999999999999875210 00111111
Q ss_pred hhhc------------c---CchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 005738 263 EMFV------------G---VGPSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM 323 (680)
Q Consensus 263 ~~~~------------g---~~~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m 323 (680)
.... + .+-..+|++.+.+. .....|+||||+|.|. ....|.||+.|
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------~~a~NaLLK~L 144 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------PQGFNALLKIV 144 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC---------------HHHHHHHHHHH
Confidence 1000 0 12344565544432 2345699999999992 23567777777
Q ss_pred cCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHH
Q 005738 324 DGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGAD 403 (680)
Q Consensus 324 d~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgad 403 (680)
+. ....+++|.+|+.++.|-+.|++ |+ .++.|..++.++..++|+..+++.++..+.+. +..|+....| +.++
T Consensus 145 EE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~ea-l~lLa~~sgG-dlR~ 217 (824)
T PRK07764 145 EE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGV-LPLVIRAGGG-SVRD 217 (824)
T ss_pred hC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHH
Confidence 76 34567777778888888889988 77 67899999999999999998877665544332 3556666655 6677
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 404 IANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 404 L~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
+.++++..+.. .+...|+.+++...
T Consensus 218 Al~eLEKLia~---~~~~~IT~e~V~al 242 (824)
T PRK07764 218 SLSVLDQLLAG---AGPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHHHhh---cCCCCCCHHHHHHH
Confidence 77777764422 23456887766644
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.4e-13 Score=157.30 Aligned_cols=210 Identities=16% Similarity=0.143 Sum_probs=145.1
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-------EEe-ec
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-------LSM-SG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~-------i~i-s~ 258 (680)
...+|+||+|++.+++.|+..+.. .++|+.+||+||+|||||++|+++|+.+++.- -.+ +|
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 345899999999999999887752 34678889999999999999999999876521 000 01
Q ss_pred hhhh----------hh--hccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh
Q 005738 259 SDFM----------EM--FVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE 322 (680)
Q Consensus 259 s~~~----------~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~ 322 (680)
-.+. +. -...+-..+|++.+.+.. ....|++|||+|.|. ....|.||..
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------------~~A~NALLK~ 141 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------------TAGFNALLKI 141 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC---------------HHHHHHHHHH
Confidence 1110 00 001123455665554432 233699999999982 1367788888
Q ss_pred hcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHH
Q 005738 323 MDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGA 402 (680)
Q Consensus 323 md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sga 402 (680)
|+. +...+++|.+|+.++.|.+.+++ |+ .++.|..++.++..+.++.++++.+...+.+ .+..++..+. -+.+
T Consensus 142 LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~-GdlR 214 (584)
T PRK14952 142 VEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGG-GSPR 214 (584)
T ss_pred Hhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC-CCHH
Confidence 876 45577888888888999999988 76 6789999999999999999888766544433 2355666554 4677
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 403 DIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 403 dL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
++.++++.++..+ +...|+.+++...+
T Consensus 215 ~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 215 DTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 8888888654322 24568877776654
No 108
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3e-14 Score=160.34 Aligned_cols=220 Identities=26% Similarity=0.371 Sum_probs=151.6
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh---------
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM--------- 262 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~--------- 262 (680)
.|-.|++++|+++.|++.-.+.....+ -.-++|+||||+|||+|++.+|+.+|.+|+.++.....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~k------GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLK------GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCC------CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 578899999999999887633222111 13478999999999999999999999999999875433
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC-----C--------CCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG-----F--------GTT 329 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~-----~--------~~~ 329 (680)
-.|+|..+.++-+-..+|....| +++|||||.++..- .+++. .+||+-+|- | -.-
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~------rGDPa-----SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF------RGDPA-----SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC------CCChH-----HHHHhhcCHhhcCchhhccccCccch
Confidence 23899999999999999998888 88899999996432 12222 334444431 1 123
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhh-----cccCCCC-c---chhHHHHHh-hC--C
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK-----KLKLDNE-P---SFYSQRLAA-LT--P 397 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~-----~~~l~~~-~---d~~l~~la~-~t--~ 397 (680)
+.|++|||+|..+.++..|+. |. ..|.++-++..|..+|.+.|+= ..++... . +..+..|.+ .| .
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREA 541 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREA 541 (782)
T ss_pred hheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhh
Confidence 679999999999999999999 99 6899999999999999998873 2233221 1 111222322 12 1
Q ss_pred CCCH--HHHHHHHHHHHHHHHHhcCC---cccHHHHHHHH
Q 005738 398 GFAG--ADIANVCNEAALIAARNESA---QITMQHFEAAI 432 (680)
Q Consensus 398 G~sg--adL~~lv~eAa~~a~r~~~~---~It~~d~~~Al 432 (680)
|.-+ +.|..+|+.++..-...... .|+..++..-+
T Consensus 542 GVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yL 581 (782)
T COG0466 542 GVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYL 581 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHh
Confidence 2221 56777777766554443322 35555555443
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=1.5e-13 Score=153.32 Aligned_cols=194 Identities=20% Similarity=0.240 Sum_probs=128.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARG 301 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~ 301 (680)
..+++||||||+|||+|++++++++ +..++++++.+|...+...-...-...|.... ..+++|+|||++.+..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3679999999999999999999876 68899999888765543221111112344332 356899999999884321
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC---CCchhhcCCCccc--cccccCCCCHHHHHHHHHHHh
Q 005738 302 RGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYL 376 (680)
Q Consensus 302 ~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l 376 (680)
....+.-.++|.+.. ....+|+++++.|. .+++.|.+ ||. ..+.+.+|+.++|..|++..+
T Consensus 219 -----~~qeelf~l~N~l~~-------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 219 -----ATQEEFFHTFNSLHT-------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred -----hhHHHHHHHHHHHHH-------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 112222333333331 23345555555554 46788988 885 688899999999999999999
Q ss_pred hcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHH--hcCCcccHHHHHHHHHHHh
Q 005738 377 KKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAAR--NESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 377 ~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r--~~~~~It~~d~~~Al~~v~ 436 (680)
...++..+.+. ++.|+....+ +.+.|.+.++..+...+. -....|+.+++++++...+
T Consensus 285 ~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 285 EALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 87765544333 4567776654 556777777766422221 1345799999999997754
No 110
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=1.6e-13 Score=151.25 Aligned_cols=181 Identities=27% Similarity=0.326 Sum_probs=116.4
Q ss_pred cccc-cccchHHHHHHHHHHHH-hcChhhHhh--hcCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-
Q 005738 190 FFKD-VAGCDEAKQEIMEFVHF-LKNPKKYEE--LGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME- 263 (680)
Q Consensus 190 ~f~d-v~G~~~~k~~L~e~v~~-l~~~~~~~~--~g~~-~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~- 263 (680)
.+++ |+|++++|+.|...+.. ++.-..... -+.. ...++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 4544 89999999999765532 111100000 0112 2467999999999999999999999999999999988764
Q ss_pred hhccCchhH-HHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------
Q 005738 264 MFVGVGPSR-VRSLFQEA----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG----------- 327 (680)
Q Consensus 264 ~~~g~~~~~-vr~lf~~A----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~----------- 327 (680)
.|+|..... +..++..+ ....++||||||||.+..++...+ ...+-..+.+.+.||..||+-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 577765433 34444332 234679999999999987632211 1111122346667777776521
Q ss_pred CCCCeEEEeccCCCC----------------------------------------------------CCchhhcCCCccc
Q 005738 328 TTAGVVVLAGTNRPD----------------------------------------------------ILDKALLRPGRFD 355 (680)
Q Consensus 328 ~~~~ViVIaaTN~~~----------------------------------------------------~LD~aLlRpgRfd 355 (680)
+....++|.|+|-.. -+.|+++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345566655400 0233443 5999
Q ss_pred cccccCCCCHHHHHHHHH
Q 005738 356 RQITIDKPDIKGRDQIFQ 373 (680)
Q Consensus 356 ~~I~v~~Pd~~eR~~Il~ 373 (680)
..+.+...+.++..+|+.
T Consensus 305 ~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 305 VVATLEELDEEALVRILT 322 (412)
T ss_pred eeeecCCCCHHHHHHHHH
Confidence 999999999999999987
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.9e-13 Score=152.82 Aligned_cols=201 Identities=19% Similarity=0.245 Sum_probs=144.4
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 252 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~--------------- 252 (680)
..+|+||+|++.+++.|+..++. .+.|+.+|||||+|+|||++|+++|+.+.++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 45799999999999999888752 3467888999999999999999999987431
Q ss_pred ---------eEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 253 ---------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 253 ---------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
++.+++++ ..+-..+|++...+... ...|++|||+|.+. ....+.|
T Consensus 79 ~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt---------------~~A~NAL 137 (535)
T PRK08451 79 SALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT---------------KEAFNAL 137 (535)
T ss_pred HHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------------HHHHHHH
Confidence 22222111 01234667766654321 12599999999882 2356778
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
|..|+.. ...+.+|.+|+.+..|.+++++ |+ ..++|.+++.++....++..++..+...+.+ .+..++..+.|
T Consensus 138 LK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s~G- 210 (535)
T PRK08451 138 LKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSGNG- 210 (535)
T ss_pred HHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 8888774 4456666677778999999998 86 6889999999999999998888766554433 35677777765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
+.+++.+++..+...+ ...||.+++.+.
T Consensus 211 dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 211 SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7788888887766443 346777777654
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3e-13 Score=151.30 Aligned_cols=208 Identities=16% Similarity=0.209 Sum_probs=139.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe---------EEeec
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF---------LSMSG 258 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~---------i~is~ 258 (680)
..+|+||+|++.+++.|...+.. .++|+.+||+||||+|||++|+++|+.+.++- ...+|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 46899999999999988887753 24678899999999999999999999875421 00111
Q ss_pred hhhhhh-------hcc---CchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFMEM-------FVG---VGPSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~~-------~~g---~~~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
..+... +-| .+-..++.+.+... .....|++|||+|.+.. ...+.|+..|+
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk~lE 146 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLKTLE 146 (451)
T ss_pred HHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHHHhh
Confidence 111000 011 12234454433332 23457999999998821 24577888887
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +...+++|.+||.+..|.+++++ |+ ..+.+..++.++....++..+++.+...+.+ .+..|+..+.| +.+++
T Consensus 147 e--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~s~g-dlr~a 219 (451)
T PRK06305 147 E--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARAAQG-SLRDA 219 (451)
T ss_pred c--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 6 34567777777888889999988 77 5789999999999999988887665544433 24667777765 44455
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.++++..... .+ ..|+.+++.+++
T Consensus 220 ~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 220 ESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 5555543322 22 448988887665
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.2e-13 Score=150.45 Aligned_cols=212 Identities=14% Similarity=0.218 Sum_probs=142.0
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE----------Eee
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL----------SMS 257 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i----------~is 257 (680)
..+|++|+|++.+++.|+..+.. .+.|+.+||+||||+|||++|+++|+.+.+.-. .-.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 45799999999999988876652 356788999999999999999999998866310 001
Q ss_pred ch------hhhh-------hhcc---CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHH
Q 005738 258 GS------DFME-------MFVG---VGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLN 317 (680)
Q Consensus 258 ~s------~~~~-------~~~g---~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~ 317 (680)
|. .+.. .+-+ .+...++++.+.+... ...|++|||+|.+.. ...+
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~~~~ 145 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------AAFN 145 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------HHHH
Confidence 11 1110 0111 1234566665555321 235999999998821 2456
Q ss_pred HHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCC
Q 005738 318 QLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTP 397 (680)
Q Consensus 318 ~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~ 397 (680)
.|+..++. +....++|.+|+.+..+-+++.+ |+ ..+.+.+++.++..+.++..++..+...+.+. ++.++..+.
T Consensus 146 ~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a-l~~l~~~s~ 219 (397)
T PRK14955 146 AFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADA-LQLIGRKAQ 219 (397)
T ss_pred HHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcC
Confidence 67777765 33455666666667788888887 77 47899999999998888888876554444332 466777776
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hcCCcccHHHHHHHH
Q 005738 398 GFAGADIANVCNEAALIAAR-NESAQITMQHFEAAI 432 (680)
Q Consensus 398 G~sgadL~~lv~eAa~~a~r-~~~~~It~~d~~~Al 432 (680)
| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 220 g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 220 G-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred C-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 5 556666777665544422 234589998888776
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.8e-13 Score=155.65 Aligned_cols=208 Identities=17% Similarity=0.202 Sum_probs=148.6
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe------------
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSM------------ 256 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i------------ 256 (680)
.+|+||+|++.+++.|...+.. .++|+++||+||+|+|||++|+++|+.+++.....
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 4799999999999999887652 35688999999999999999999999886542111
Q ss_pred -echhhh--------hhh--ccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHH
Q 005738 257 -SGSDFM--------EMF--VGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLV 321 (680)
Q Consensus 257 -s~s~~~--------~~~--~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~ 321 (680)
+|..+. +.- -..+-..+|.++..+... ...|++|||+|.+. ....|.||.
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls---------------~~a~naLLK 154 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS---------------TAAFNALLK 154 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC---------------HHHHHHHHH
Confidence 111111 100 012335677787766532 24699999999882 134677887
Q ss_pred hhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCH
Q 005738 322 EMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAG 401 (680)
Q Consensus 322 ~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sg 401 (680)
.|+. +...+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++...+++..+++.+...+.+ .+..|+..+.| +.
T Consensus 155 tLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~a~G-dl 227 (598)
T PRK09111 155 TLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARAAEG-SV 227 (598)
T ss_pred HHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 7776 34556777777777888888888 77 5789999999999999999888776555433 24667777765 77
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 402 ADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 402 adL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
+++.++++.+... +...|+.+++...+.
T Consensus 228 r~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 228 RDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 7888888765433 234699988887653
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.8e-13 Score=154.94 Aligned_cols=209 Identities=17% Similarity=0.205 Sum_probs=146.4
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------eEEe-ec
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------FLSM-SG 258 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------~i~i-s~ 258 (680)
...+|+||+|++.+++.|+..+.. .++|+.+||+||+|+|||++|+++|+.++++ .-.+ +|
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 446899999999999998887752 2457889999999999999999999988652 1110 11
Q ss_pred hhhhhh-------hcc---CchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFMEM-------FVG---VGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~~-------~~g---~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
-.+... +-| .+-..++.+.+.+.. ....|++|||+|.+. ....|.||..++
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls---------------~~a~naLLK~LE 144 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS---------------NSAFNALLKTIE 144 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC---------------HHHHHHHHHhhc
Confidence 111000 011 123455665544432 234699999999882 235678888887
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
. +...+++|.+|+.+..|.+++++ |+ ..+.+.+++.++..++++..++..+...+.+. +..|+..+.| +.+++
T Consensus 145 e--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eA-l~lLa~~s~G-dlR~a 217 (563)
T PRK06647 145 E--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEA-LKWIAYKSTG-SVRDA 217 (563)
T ss_pred c--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHH
Confidence 5 45677777788878889999988 87 46889999999999999988877665544332 4667777766 67788
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.++++.++..+ ...|+.+++.+.+
T Consensus 218 lslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 218 YTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 88887655332 2458888877765
No 116
>PRK08727 hypothetical protein; Validated
Probab=99.52 E-value=1.1e-12 Score=134.57 Aligned_cols=209 Identities=17% Similarity=0.187 Sum_probs=131.4
Q ss_pred CCcccccccccchH-HHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 186 KDKVFFKDVAGCDE-AKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 186 ~~~~~f~dv~G~~~-~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
.+..+|++.++... ....+..+ .. + .....++|+||+|||||+|+++++.++ +....+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~---~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQAL---AA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHH---Hh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 45668988775543 22222211 11 1 123569999999999999999997765 667777776654
Q ss_pred hhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 262 MEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.. .+.+.++... ...+|+|||+|.+.. ....+..+..++.... .+..-+|+++.+.|
T Consensus 81 ~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~----------~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p 137 (233)
T PRK08727 81 AG--------RLRDALEALE--GRSLVALDGLESIAG----------QREDEVALFDFHNRAR---AAGITLLYTARQMP 137 (233)
T ss_pred hh--------hHHHHHHHHh--cCCEEEEeCcccccC----------ChHHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 32 2233444332 346999999998832 2223344445554432 22223444444566
Q ss_pred CCC---chhhcCCCcc--ccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 342 DIL---DKALLRPGRF--DRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 342 ~~L---D~aLlRpgRf--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
..+ ++.|.+ || ...+.++.|+.+++.+|++.++...++..+.+. ++.|+.++.| +.+.+.++++.....+.
T Consensus 138 ~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 138 DGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESL 213 (233)
T ss_pred hhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 655 789988 86 467899999999999999998776555544433 5678887764 44455555665443344
Q ss_pred HhcCCcccHHHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAIDR 434 (680)
Q Consensus 417 r~~~~~It~~d~~~Al~~ 434 (680)
.. ++.||...+.+.+..
T Consensus 214 ~~-~~~it~~~~~~~l~~ 230 (233)
T PRK08727 214 AA-KRRVTVPFLRRVLEE 230 (233)
T ss_pred Hh-CCCCCHHHHHHHHhh
Confidence 33 457999988887753
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=1.4e-12 Score=151.16 Aligned_cols=217 Identities=21% Similarity=0.326 Sum_probs=135.0
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEee
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMS 257 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is 257 (680)
..+|++++|++.+.+.+...+. . ..|..++|+||||||||++|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 4579999999999887654432 1 235679999999999999999998755 46799999
Q ss_pred chhhh-------hhhccCchhH----HHHHHHH----------HHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHH
Q 005738 258 GSDFM-------EMFVGVGPSR----VRSLFQE----------ARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTL 316 (680)
Q Consensus 258 ~s~~~-------~~~~g~~~~~----vr~lf~~----------A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l 316 (680)
|..+. ...+|..... .+..++. ......++|||||++.|. ...+..+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld------------~~~Q~~L 285 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD------------PLLQNKL 285 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC------------HHHHHHH
Confidence 87642 1122221110 1111110 012234699999998882 2333344
Q ss_pred HHHHHhhc-----C------------------CCCCCCeEEEec-cCCCCCCchhhcCCCccccccccCCCCHHHHHHHH
Q 005738 317 NQLLVEMD-----G------------------FGTTAGVVVLAG-TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIF 372 (680)
Q Consensus 317 ~~LL~~md-----~------------------~~~~~~ViVIaa-TN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il 372 (680)
..++..-. + -.....+++|++ |+.++.++++|++ ||. .+.+++++.+++.+|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 44443210 0 001233555554 5678889999988 986 5788889999999999
Q ss_pred HHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------cCCcccHHHHHHHHHH
Q 005738 373 QIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN--------ESAQITMQHFEAAIDR 434 (680)
Q Consensus 373 ~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~--------~~~~It~~d~~~Al~~ 434 (680)
+.++.......+.+ .++.|+..+. .++..-+++..+...+..+ ....|+.+|+++++..
T Consensus 363 ~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 363 LNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99988755433322 3455666553 4555555555554333211 2237999999998853
No 118
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.52 E-value=6.7e-13 Score=152.80 Aligned_cols=215 Identities=19% Similarity=0.201 Sum_probs=140.3
Q ss_pred cccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCe-EEEEcCCCChHHHHHHHHHHhc-------C---CCeEEeech
Q 005738 192 KDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKG-ALLVGPPGTGKTLLAKATAGES-------G---VPFLSMSGS 259 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~g-vLL~GppGtGKT~LAralA~e~-------~---~~~i~is~s 259 (680)
+.|.|.++..++|..++.. +. + ..|.+ ++|+|+||||||++++.+.+++ + +.+++++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 5577777777777777664 32 1 22444 5699999999999999998765 2 557899995
Q ss_pred hhhhh----------hccC-------chhHHHHHHHHHHh--cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHH
Q 005738 260 DFMEM----------FVGV-------GPSRVRSLFQEARQ--CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLL 320 (680)
Q Consensus 260 ~~~~~----------~~g~-------~~~~vr~lf~~A~~--~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL 320 (680)
.+... +.+. ....+..+|..... ....||+|||||.|..+ .+..|..|+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYnLF 893 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFTLF 893 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHHHH
Confidence 43211 1111 12344556665422 23579999999999432 235677777
Q ss_pred HhhcCCCCCCCeEEEeccCC---CCCCchhhcCCCcccc-ccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhC
Q 005738 321 VEMDGFGTTAGVVVLAGTNR---PDILDKALLRPGRFDR-QITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALT 396 (680)
Q Consensus 321 ~~md~~~~~~~ViVIaaTN~---~~~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t 396 (680)
..... ....++||+++|. ++.|+|.+.+ ||.. .+.|++++.+++.+||+..+.......+ +..+..+|+..
T Consensus 894 R~~~~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLd-DdAIELIArkV 968 (1164)
T PTZ00112 894 DWPTK--INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIID-HTAIQLCARKV 968 (1164)
T ss_pred HHhhc--cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHhh
Confidence 65432 3457899999985 5677888887 6653 4888999999999999999875421111 22244555533
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 005738 397 PGFAGADIA---NVCNEAALIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 397 ~G~sgadL~---~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
...+ +|++ .+|+.|+.. .+...|+.+|+.+|++++.
T Consensus 969 Aq~S-GDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 969 ANVS-GDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hhcC-CHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 3222 2444 556666543 3455899999999998763
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=1e-12 Score=146.94 Aligned_cols=193 Identities=17% Similarity=0.262 Sum_probs=130.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhhhhhhccCchh---HHHHHHHHHHhcCCeEEEEcCcchh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDFMEMFVGVGPS---RVRSLFQEARQCAPSIVFIDEIDAI 296 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~~~~~~g~~~~---~vr~lf~~A~~~~P~ILfIDEiD~L 296 (680)
..+++|||++|+|||+|++++++++ +..++++++.+|...+...-.. .+..+.+. ...+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999854 5678899999987765432211 12221111 234679999999988
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC---CCchhhcCCCccc--cccccCCCCHHHHHHH
Q 005738 297 GRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQI 371 (680)
Q Consensus 297 ~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~I 371 (680)
.. .+..+..+..++..+. ...+.+|+++...|+ .+++.|.+ ||. ..+.+.+|+.++|.+|
T Consensus 219 ~~----------k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SY----------KEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cC----------CHHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 32 2223333444443332 223345555444554 35778888 885 5677889999999999
Q ss_pred HHHHhhcccCC-CCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHH
Q 005738 372 FQIYLKKLKLD-NEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE-SAQITMQHFEAAIDRV 435 (680)
Q Consensus 372 l~~~l~~~~l~-~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~-~~~It~~d~~~Al~~v 435 (680)
++..++..++. .-.+..++.|+....| +.+.+.++|+.+...+.... ...|+.+.+.+++...
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 99999875542 1123335678887776 77899999998775554442 3679999999998764
No 120
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.49 E-value=1.9e-13 Score=146.68 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=134.3
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEe--e
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSM--S 257 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i~i--s 257 (680)
....|++|+|++++++.|.-.+- ++ --.++||+|+||||||++|+++++-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 35679999999999988764221 01 01579999999999999999999987 3322111 1
Q ss_pred c-hhh---------------hhhhccCchhHHHH--HHHHH-------------HhcCCeEEEEcCcchhhhhcCCCCCC
Q 005738 258 G-SDF---------------MEMFVGVGPSRVRS--LFQEA-------------RQCAPSIVFIDEIDAIGRARGRGGFS 306 (680)
Q Consensus 258 ~-s~~---------------~~~~~g~~~~~vr~--lf~~A-------------~~~~P~ILfIDEiD~L~~~r~~~~~~ 306 (680)
+ .++ .....+.++.++-. .++.+ .....++||||||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 000 00111111111100 01111 01122599999999882
Q ss_pred CCChHHHHHHHHHHHhhcCC-----------CCCCCeEEEeccCCCC-CCchhhcCCCccccccccCCCCH-HHHHHHHH
Q 005738 307 GGNDERESTLNQLLVEMDGF-----------GTTAGVVVLAGTNRPD-ILDKALLRPGRFDRQITIDKPDI-KGRDQIFQ 373 (680)
Q Consensus 307 ~~~~~~~~~l~~LL~~md~~-----------~~~~~ViVIaaTN~~~-~LD~aLlRpgRfd~~I~v~~Pd~-~eR~~Il~ 373 (680)
. .+.+.|+..|+.- .....+++++++|..+ .++++|+. ||...+.++.|.. ++|.+|++
T Consensus 142 ---~---~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 142 ---D---HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred ---H---HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 2 2444555555421 1235689999999654 68999999 9999999998866 89999998
Q ss_pred HHhhccc-------------------------------CCCCcchhHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Q 005738 374 IYLKKLK-------------------------------LDNEPSFYSQRLAALTP-GFAGADIANVCNEAALIAARNESA 421 (680)
Q Consensus 374 ~~l~~~~-------------------------------l~~~~d~~l~~la~~t~-G~sgadL~~lv~eAa~~a~r~~~~ 421 (680)
....... ++...-..+..++..+. .-..+++. +++.|...|+.+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7532110 00000011122333332 12345666 889899999999999
Q ss_pred cccHHHHHHHHHHHh
Q 005738 422 QITMQHFEAAIDRVI 436 (680)
Q Consensus 422 ~It~~d~~~Al~~v~ 436 (680)
.|+.+|+..+..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988875554
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=99.49 E-value=2.6e-12 Score=131.95 Aligned_cols=180 Identities=14% Similarity=0.194 Sum_probs=122.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARG 301 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~ 301 (680)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+..+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC--
Confidence 3678999999999999999998764 6778889988876431 122222322 258999999987321
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC---CchhhcCCCccc--cccccCCCCHHHHHHHHHHHh
Q 005738 302 RGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYL 376 (680)
Q Consensus 302 ~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l 376 (680)
...+..+..++.. +..+...+|++++..|.. ..|.|++ ||. ..+.+..|+.++|.++++..+
T Consensus 113 --------~~~~~~Lf~l~n~---~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 113 --------ADWEEALFHLFNR---LRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred --------hHHHHHHHHHHHH---HHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 2223344444433 223455677777766643 3688888 884 667789999999999999766
Q ss_pred hcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 377 KKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 377 ~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
...++..+.+ .++.|+.+..+ +.+.+.++++.-.. ++...++.||..-+.+++
T Consensus 180 ~~~~~~l~~e-v~~~L~~~~~~-d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDE-VGHFILTRGTR-SMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 6555444433 35677777765 77888888886654 333445679988877765
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.1e-12 Score=150.90 Aligned_cols=213 Identities=15% Similarity=0.220 Sum_probs=142.5
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE----------e
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS----------M 256 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~----------i 256 (680)
...+|++|+|++.+++.|+..+.. .++++++||+||+|||||++|+++|+.+.+.--. -
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 345899999999999998876542 3568889999999999999999999998763100 1
Q ss_pred ech------hhhh-------hhcc---CchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHH
Q 005738 257 SGS------DFME-------MFVG---VGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTL 316 (680)
Q Consensus 257 s~s------~~~~-------~~~g---~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l 316 (680)
.|. .+.. .+-+ .+...++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~a~ 144 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------AAF 144 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------HHH
Confidence 111 1100 0111 123456666655532 2246999999998821 246
Q ss_pred HHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhC
Q 005738 317 NQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALT 396 (680)
Q Consensus 317 ~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t 396 (680)
+.||..|+.. ...+++|.+|+.+..|-+.+.+ |. ..+.+..++.++....+...++..+...+.+. ++.|+..+
T Consensus 145 naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~ea-l~~La~~s 218 (620)
T PRK14954 145 NAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADA-LQLIARKA 218 (620)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHh
Confidence 7788777763 3445666566667888888888 66 67899999999988888888776554444332 46677777
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HhcCCcccHHHHHHHH
Q 005738 397 PGFAGADIANVCNEAALIAA-RNESAQITMQHFEAAI 432 (680)
Q Consensus 397 ~G~sgadL~~lv~eAa~~a~-r~~~~~It~~d~~~Al 432 (680)
.| +.+++.+.++.....+. ......|+.+++.+.+
T Consensus 219 ~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 219 QG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred CC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 65 55566666655443331 1235678988887766
No 123
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=1.5e-13 Score=149.32 Aligned_cols=175 Identities=31% Similarity=0.436 Sum_probs=128.9
Q ss_pred ccccchHHHHHHHHHHHH-hcChhhHhhhc-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-hhccC-
Q 005738 193 DVAGCDEAKQEIMEFVHF-LKNPKKYEELG-AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-MFVGV- 268 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g-~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-~~~g~- 268 (680)
.|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|+++|+.++.||+.+++++|++ .|+|.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999776642 11110000011 113689999999999999999999999999999999999986 58884
Q ss_pred chhHHHHHHHHHH-------------------------------------------------------------------
Q 005738 269 GPSRVRSLFQEAR------------------------------------------------------------------- 281 (680)
Q Consensus 269 ~~~~vr~lf~~A~------------------------------------------------------------------- 281 (680)
.+..++++|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3566666666661
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 005738 282 ---------------------------------------------------------------------Q--CAPSIVFI 290 (680)
Q Consensus 282 ---------------------------------------------------------------------~--~~P~ILfI 290 (680)
. ..-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13369999
Q ss_pred cCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCCeEEEeccC----CCCCCchhhcCCCcccccc
Q 005738 291 DEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------TTAGVVVLAGTN----RPDILDKALLRPGRFDRQI 358 (680)
Q Consensus 291 DEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~~~~ViVIaaTN----~~~~LD~aLlRpgRfd~~I 358 (680)
||||.++.+.+. ++.+...+.+...||..++|-. ...++++||+-- .|+.|-|.|.- ||...+
T Consensus 256 DEiDKIa~~~~~---~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGS---SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EcchhhcccCCC---CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 999999876432 2334455668888888888732 346788888753 46677788865 999999
Q ss_pred ccCCCCHHHHHHHH
Q 005738 359 TIDKPDIKGRDQIF 372 (680)
Q Consensus 359 ~v~~Pd~~eR~~Il 372 (680)
.+..++.++...||
T Consensus 331 ~L~~L~~~dL~~IL 344 (443)
T PRK05201 331 ELDALTEEDFVRIL 344 (443)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999988888
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.3e-12 Score=151.07 Aligned_cols=205 Identities=19% Similarity=0.257 Sum_probs=140.9
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE----eech----
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS----MSGS---- 259 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~----is~s---- 259 (680)
..+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+++.... -.|.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 46799999999999999888764 2356789999999999999999999998663110 0111
Q ss_pred ----------hhh--hhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 005738 260 ----------DFM--EMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM 323 (680)
Q Consensus 260 ----------~~~--~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m 323 (680)
++. +.....+...+|+++..+... ...|++|||+|.|. ....+.||..|
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------------~~a~naLLK~L 145 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------------TAAFNALLKTL 145 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC---------------HHHHHHHHHHH
Confidence 110 001123445788888776532 23699999999882 13567888888
Q ss_pred cCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHH
Q 005738 324 DGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGAD 403 (680)
Q Consensus 324 d~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgad 403 (680)
+. +...+++|.+|+.++.+-+.+++ |+ ..+.|..++.++....++..+.+.+...+.+. +..++..+.| +.++
T Consensus 146 Ee--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G-~lr~ 218 (620)
T PRK14948 146 EE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG-GLRD 218 (620)
T ss_pred hc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-CHHH
Confidence 86 44567777778888888899988 77 56888889888888888877776555444332 4677777766 4466
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 404 IANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 404 L~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
+.++++...+. ...|+.+++.+
T Consensus 219 A~~lLeklsL~-----~~~It~e~V~~ 240 (620)
T PRK14948 219 AESLLDQLSLL-----PGPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHhc-----cCCCCHHHHHH
Confidence 66666643322 12466666554
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=6.3e-13 Score=137.08 Aligned_cols=182 Identities=21% Similarity=0.263 Sum_probs=129.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC------eEEeechhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP------FLSMSGSDF 261 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~------~i~is~s~~ 261 (680)
.-+|+|++|++.+.+.|+..+.. +.-...|||||||||||+.|+++|+++..| +...+.|+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 34799999999999999887653 123468999999999999999999998763 344455554
Q ss_pred hhhhccCchhHHHHHHHHHHhc---------CC-eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCC
Q 005738 262 MEMFVGVGPSRVRSLFQEARQC---------AP-SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAG 331 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~~---------~P-~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ 331 (680)
...-++ ..++. -|++.... .| .|++|||.|.+.. ...+.|..-|+.+. ..
T Consensus 100 rGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s--~~ 159 (346)
T KOG0989|consen 100 RGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFS--RT 159 (346)
T ss_pred ccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhccc--cc
Confidence 332211 11111 13332211 12 5999999999932 35567777788754 45
Q ss_pred eEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHH
Q 005738 332 VVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCN 409 (680)
Q Consensus 332 ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~ 409 (680)
+.+|..||.++.|.+-+.+ |+ ..+.|+..+.+.....|+.++.+.+++.+.+. ++.|+..+.| ||+..+.
T Consensus 160 trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG----DLRRAIT 229 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC----cHHHHHH
Confidence 6777789999999999988 88 56788888888888899999988888777654 5778887776 5554444
No 126
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=1.2e-12 Score=136.65 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=118.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh------hhhhhccCchhHHHH--------------------HHH
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD------FMEMFVGVGPSRVRS--------------------LFQ 278 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~------~~~~~~g~~~~~vr~--------------------lf~ 278 (680)
...+||+||||||||++|+++|..+|.|++.++|.. ++..+.+.....+.+ .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 357999999999999999999999999999998753 333222221111111 112
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh----cCC-------CCCCCeEEEeccCCCC-----
Q 005738 279 EARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM----DGF-------GTTAGVVVLAGTNRPD----- 342 (680)
Q Consensus 279 ~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m----d~~-------~~~~~ViVIaaTN~~~----- 342 (680)
.|.. ...+|+|||||.+ +.+.+..|..+|.+- .+. ..+.++.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHH-cCCEEEEcchhhC------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2222 3469999999886 233444555555331 010 1224678999999753
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhh------CCCCCHHHHHHHHHHHHHHHH
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAAL------TPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~------t~G~sgadL~~lv~eAa~~a~ 416 (680)
.++++|++ || ..+.++.|+.++..+|++.+.. .+...-..+-.++.. ....+ ++.++.-|...+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~ 238 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQ 238 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHH
Confidence 56889999 98 6899999999999999998752 222111111111111 11223 4444443333344
Q ss_pred HhcCCcccHHHHHHHHHHHhc
Q 005738 417 RNESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 417 r~~~~~It~~d~~~Al~~v~~ 437 (680)
...+..++.+||.+....++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 239 QDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred cCCCCCCCcHHHHHHHHHHhc
Confidence 455778899999988876654
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.48 E-value=4.8e-13 Score=149.44 Aligned_cols=209 Identities=19% Similarity=0.299 Sum_probs=157.6
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe--EEee---ch-
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSMS---GS- 259 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~--i~is---~s- 259 (680)
+...+|+|++|++.+...|.+.+.. .+++++.||+||.|||||++||.+|+.+++.- ..-- |.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3456899999999999999998875 23556789999999999999999999887642 1111 11
Q ss_pred ----------hhhhh--hccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 005738 260 ----------DFMEM--FVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM 323 (680)
Q Consensus 260 ----------~~~~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m 323 (680)
|+++. -...+-..+|.+.+++.. ....|.+|||+|.|. .+..|.||..+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTL 143 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTL 143 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhccc
Confidence 11111 011234567887777643 234699999999992 35789999999
Q ss_pred cCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHH
Q 005738 324 DGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGAD 403 (680)
Q Consensus 324 d~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgad 403 (680)
+. +..+|++|.+|..+..+++.+++ |+ .++.+..-+.++....|+..+.+.++..+.+. +..+|+...| |.+|
T Consensus 144 EE--PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a-L~~ia~~a~G-s~RD 216 (515)
T COG2812 144 EE--PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDA-LSLIARAAEG-SLRD 216 (515)
T ss_pred cc--CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHcCC-Chhh
Confidence 87 67889999999999999999999 88 56889999999999999999988887776554 5778888877 7899
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 404 IANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 404 L~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
..++++.|..... ..|+.+++...
T Consensus 217 alslLDq~i~~~~----~~It~~~v~~~ 240 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVRDM 240 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHHHH
Confidence 9999998765431 45666555543
No 128
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.48 E-value=1e-12 Score=137.52 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=93.9
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC------------CCCCchhhcCCC
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR------------PDILDKALLRPG 352 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~------------~~~LD~aLlRpg 352 (680)
|+||||||+|.| +-+.-..+|.-++. .-.-+||.|||+ |.-++..|+.
T Consensus 292 pGVLFIDEvHmL------------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 292 PGVLFIDEVHML------------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred cceEEEechhhh------------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 667777777766 22233344443321 112266667775 5567777877
Q ss_pred ccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 353 RFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 353 Rfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
|+ ..|...+.+.++.++|++..++...+..+.+. ++.|+....--|-+..-+|+.-|...|.++++..|..+|+++|.
T Consensus 352 Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~A-le~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 352 RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDA-LEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHH-HHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 76 56777888999999999999987766665543 57788877777778888999999999999999999999999997
Q ss_pred HHH
Q 005738 433 DRV 435 (680)
Q Consensus 433 ~~v 435 (680)
+-.
T Consensus 430 ~lF 432 (450)
T COG1224 430 ELF 432 (450)
T ss_pred HHH
Confidence 644
No 129
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.6e-12 Score=150.25 Aligned_cols=209 Identities=15% Similarity=0.237 Sum_probs=141.1
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE---ee---ch-
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS---MS---GS- 259 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~---is---~s- 259 (680)
...+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++..-. .. |.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 446899999999999999887753 2356778999999999999999999987642210 01 11
Q ss_pred --hhhhh----h------ccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 005738 260 --DFMEM----F------VGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM 323 (680)
Q Consensus 260 --~~~~~----~------~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m 323 (680)
.+... + ...+...++++.+.+.. ....|++|||+|.|. ...++.||..+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~---------------~~a~naLLk~L 144 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS---------------TAAFNALLKTL 144 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC---------------HHHHHHHHHHH
Confidence 11000 0 01123345655544432 224699999999882 13567788877
Q ss_pred cCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHH
Q 005738 324 DGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGAD 403 (680)
Q Consensus 324 d~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgad 403 (680)
+.. ...+++|.+|+..+.+.+.+.+ |+ ..+.|..++..+...+++..+...+...+.+ .+..|+..+.| +.++
T Consensus 145 Eep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G-dlr~ 217 (585)
T PRK14950 145 EEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG-SMRD 217 (585)
T ss_pred hcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 763 3456666667777778888887 77 4688999999999999988887766554433 24677777766 6677
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 404 IANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 404 L~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+.++..+.. ....|+.+++...+
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 77777754332 34468888877654
No 130
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.47 E-value=3.9e-13 Score=144.70 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=140.1
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEee-
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSMS- 257 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is- 257 (680)
.....|++|+|++++|..|.-.+ .+|. ..|+||.||+|||||++||+++..+ +.||..-.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 44668999999999998886543 2332 3689999999999999999998765 23443000
Q ss_pred -----chhhhhh-------------------hccCchhH------HHHHHHHHH---------hcCCeEEEEcCcchhhh
Q 005738 258 -----GSDFMEM-------------------FVGVGPSR------VRSLFQEAR---------QCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 258 -----~s~~~~~-------------------~~g~~~~~------vr~lf~~A~---------~~~P~ILfIDEiD~L~~ 298 (680)
++++... -.|..+.+ +...|.... +...++|||||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0011110 01222222 112222221 11236999999998832
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcC---------C--CCCCCeEEEeccCCCC-CCchhhcCCCccccccccCCCC-H
Q 005738 299 ARGRGGFSGGNDERESTLNQLLVEMDG---------F--GTTAGVVVLAGTNRPD-ILDKALLRPGRFDRQITIDKPD-I 365 (680)
Q Consensus 299 ~r~~~~~~~~~~~~~~~l~~LL~~md~---------~--~~~~~ViVIaaTN~~~-~LD~aLlRpgRfd~~I~v~~Pd-~ 365 (680)
. +.+.|+..|+. . ....++++|++.|..+ .+.++|+. ||..++.+..|+ .
T Consensus 159 ------------~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 ------------H---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred ------------H---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 2 33344444432 1 1235688888888655 69999999 999999999997 5
Q ss_pred HHHHHHHHHHhhcc-------------------------------cCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 366 KGRDQIFQIYLKKL-------------------------------KLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 366 ~eR~~Il~~~l~~~-------------------------------~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
+.+.+|++...... .++...-..+..++..+.--+.+--..+++-|...
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 89999998753211 00000011122334444333555555777878888
Q ss_pred HHHhcCCcccHHHHHHHHHHHhc
Q 005738 415 AARNESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~~v~~ 437 (680)
|+.+++..|+.+|+..+..-++.
T Consensus 302 Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 302 AAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987764
No 131
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=2.2e-12 Score=137.55 Aligned_cols=200 Identities=19% Similarity=0.238 Sum_probs=131.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeechhhhh
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSMSGSDFME 263 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~-----~~~i~is~s~~~~ 263 (680)
.+|+|++|++++++.|...+.. . . ..+++|+||||||||++++++++++. .+++.+++++-.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~---~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~- 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE---K--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER- 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC---C--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-
Confidence 5899999999999998887642 1 1 23589999999999999999999873 235555444311
Q ss_pred hhccCchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 264 MFVGVGPSRVRSLFQEARQ------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
+...++..+..... ..+.+|+|||+|.+.. . ..+.|+..++.... ...+|.+
T Consensus 81 -----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~---~~~~L~~~le~~~~--~~~lIl~ 138 (319)
T PRK00440 81 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------D---AQQALRRTMEMYSQ--NTRFILS 138 (319)
T ss_pred -----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------H---HHHHHHHHHhcCCC--CCeEEEE
Confidence 11222333322221 2346999999998822 1 12344555554333 3455556
Q ss_pred cCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005738 338 TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAAR 417 (680)
Q Consensus 338 TN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r 417 (680)
+|.+..+.+++.+ |+. .+.+++|+.++...+++.++++.+...+.+ .+..++..+.| +.+.+.+.++.++ .
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~---~- 209 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAA---A- 209 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH---H-
Confidence 7777777777877 774 589999999999999999998776654443 35777777655 3344444444332 2
Q ss_pred hcCCcccHHHHHHHHH
Q 005738 418 NESAQITMQHFEAAID 433 (680)
Q Consensus 418 ~~~~~It~~d~~~Al~ 433 (680)
....||.+++..++.
T Consensus 210 -~~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 -TGKEVTEEAVYKITG 224 (319)
T ss_pred -cCCCCCHHHHHHHhC
Confidence 245799999988763
No 132
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=2.2e-13 Score=147.95 Aligned_cols=175 Identities=30% Similarity=0.438 Sum_probs=126.6
Q ss_pred ccccchHHHHHHHHHHHH-hcChhhHhhh-cCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-hhcc-C
Q 005738 193 DVAGCDEAKQEIMEFVHF-LKNPKKYEEL-GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-MFVG-V 268 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~-l~~~~~~~~~-g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-~~~g-~ 268 (680)
-|+|++++|+.+...+.. .+.......+ .--.|+++||+||||||||++|+++|+.++.||+.++++.+++ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999765542 1111100011 1225789999999999999999999999999999999988875 5777 3
Q ss_pred chhHHHHHHHHHH-------------------------------------------------------------------
Q 005738 269 GPSRVRSLFQEAR------------------------------------------------------------------- 281 (680)
Q Consensus 269 ~~~~vr~lf~~A~------------------------------------------------------------------- 281 (680)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 4556666655540
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 005738 282 ------------------------------------------------------------------------QCAPSIVF 289 (680)
Q Consensus 282 ------------------------------------------------------------------------~~~P~ILf 289 (680)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01346999
Q ss_pred EcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCCeEEEeccC----CCCCCchhhcCCCccccc
Q 005738 290 IDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------TTAGVVVLAGTN----RPDILDKALLRPGRFDRQ 357 (680)
Q Consensus 290 IDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~~~~ViVIaaTN----~~~~LD~aLlRpgRfd~~ 357 (680)
|||||.++.+.. ..+.+-..+.+...||..++|-. ...++++||+.- .|+.|=|.|.- ||...
T Consensus 253 iDEiDKIa~~~~---~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGE---SSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIR 327 (441)
T ss_pred EEchhhhcccCC---CCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 999999987642 12334445667888888888732 346788888854 46666677754 99999
Q ss_pred cccCCCCHHHHHHHH
Q 005738 358 ITIDKPDIKGRDQIF 372 (680)
Q Consensus 358 I~v~~Pd~~eR~~Il 372 (680)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999988888
No 133
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=1.7e-12 Score=142.64 Aligned_cols=179 Identities=27% Similarity=0.354 Sum_probs=115.0
Q ss_pred ccccchHHHHHHHHHHHH----hcCh-hhHhhhcCCC-CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-hh
Q 005738 193 DVAGCDEAKQEIMEFVHF----LKNP-KKYEELGAKI-PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-MF 265 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~----l~~~-~~~~~~g~~~-p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-~~ 265 (680)
-|+|++++++.+...+.. +... ..-...+... +.++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999766521 2110 0000001111 357999999999999999999999999999999888753 47
Q ss_pred ccCc-hhHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CC
Q 005738 266 VGVG-PSRVRSLFQEA----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TT 329 (680)
Q Consensus 266 ~g~~-~~~vr~lf~~A----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~ 329 (680)
+|.. +..+..++..+ ....++||||||||.+.+++...+. ..+...+.+.+.||..|+|.. +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~-~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSI-TRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccc-cccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 7764 33344444322 2346789999999999876432211 111112245556666665531 12
Q ss_pred CCeEEEeccCCC---------------------------C-----------------------CCchhhcCCCccccccc
Q 005738 330 AGVVVLAGTNRP---------------------------D-----------------------ILDKALLRPGRFDRQIT 359 (680)
Q Consensus 330 ~~ViVIaaTN~~---------------------------~-----------------------~LD~aLlRpgRfd~~I~ 359 (680)
.+.++|.|+|-. + -+.|+|+ ||+|..+.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 346777777751 0 0224444 49999999
Q ss_pred cCCCCHHHHHHHHHH
Q 005738 360 IDKPDIKGRDQIFQI 374 (680)
Q Consensus 360 v~~Pd~~eR~~Il~~ 374 (680)
+.+.+.++..+|+..
T Consensus 315 f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 315 LEKLDEEALIAILTK 329 (413)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999998876
No 134
>PRK06620 hypothetical protein; Validated
Probab=99.45 E-value=1.9e-12 Score=131.16 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=124.2
Q ss_pred CCcccccccccch---HHHHHHHHHHHHhcChhhHhhhcCCCC--CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 186 KDKVFFKDVAGCD---EAKQEIMEFVHFLKNPKKYEELGAKIP--KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 186 ~~~~~f~dv~G~~---~~k~~L~e~v~~l~~~~~~~~~g~~~p--~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
.+..+|++++-.+ .+...++++.+ .| +. .| ..++||||||||||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------cc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 4566888865544 34444444332 11 11 23 679999999999999999999988764322 111
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
.. ...+ ...++|+|||||.+. . ..+..++..+. ..+..+||+++..
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~~-----------~----~~lf~l~N~~~---e~g~~ilits~~~ 123 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENWQ-----------E----PALLHIFNIIN---EKQKYLLLTSSDK 123 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccch-----------H----HHHHHHHHHHH---hcCCEEEEEcCCC
Confidence 10 1111 123699999998540 1 12223332222 3445778888766
Q ss_pred CCC--CchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 341 PDI--LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 341 ~~~--LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
|.. + |+|++ |+. ..+.+..|+.+.+..+++.++...++..+.+. ++.|+.+..| +.+.+.++++.....+.
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 198 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFAL 198 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 654 5 78888 885 36899999999999999998876555544333 5778887765 66778888886443333
Q ss_pred HhcCCcccHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAI 432 (680)
Q Consensus 417 r~~~~~It~~d~~~Al 432 (680)
..++.||...+.+++
T Consensus 199 -~~~~~it~~~~~~~l 213 (214)
T PRK06620 199 -ISKRKITISLVKEVL 213 (214)
T ss_pred -HcCCCCCHHHHHHHh
Confidence 344679988887765
No 135
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.44 E-value=1.3e-12 Score=132.99 Aligned_cols=199 Identities=20% Similarity=0.288 Sum_probs=121.9
Q ss_pred Ccccccccc-cc--hHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeec
Q 005738 187 DKVFFKDVA-GC--DEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSG 258 (680)
Q Consensus 187 ~~~~f~dv~-G~--~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~ 258 (680)
++.||++.+ |- ..+....+.+... +. ..-..++||||+|+|||+|++|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN---PG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS---TT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc---CC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 457899975 42 3334344433332 21 122468999999999999999999875 667999999
Q ss_pred hhhhhhhccCchh-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 259 SDFMEMFVGVGPS-RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 259 s~~~~~~~g~~~~-~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
.+|...+...... .+.. |..... ...+|+||++|.+..+ ...+..+..++..+ ..+++.+|+++
T Consensus 73 ~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~---~~~~k~li~ts 137 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK----------QRTQEELFHLFNRL---IESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH----------HHHHHHHHHHHHHH---HHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc----------hHHHHHHHHHHHHH---HhhCCeEEEEe
Confidence 9987665432211 1222 222222 4579999999999432 22333444444333 34455677777
Q ss_pred cCCCCC---CchhhcCCCcccc--ccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 005738 338 TNRPDI---LDKALLRPGRFDR--QITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAA 412 (680)
Q Consensus 338 TN~~~~---LD~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa 412 (680)
...|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..+...++..+.+. ++.|+...++ +.++|..+++...
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHH
Confidence 666664 4677877 8754 7888999999999999999988877765443 4667777654 6788888888654
Q ss_pred HH
Q 005738 413 LI 414 (680)
Q Consensus 413 ~~ 414 (680)
..
T Consensus 214 ~~ 215 (219)
T PF00308_consen 214 AY 215 (219)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.8e-12 Score=139.59 Aligned_cols=218 Identities=19% Similarity=0.259 Sum_probs=152.9
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----eEEeechhhhhh---
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-----FLSMSGSDFMEM--- 264 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-----~i~is~s~~~~~--- 264 (680)
.+.+-++..+.+..++...- ....|.++++|||||||||..++.+++++.-+ ++++||-...+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 38999999999988866522 22346779999999999999999999987433 899999654322
Q ss_pred -------h-----ccCchhHH-HHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 005738 265 -------F-----VGVGPSRV-RSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTA 330 (680)
Q Consensus 265 -------~-----~g~~~~~v-r~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~ 330 (680)
+ .|.....+ ..+++.... ..+-||++||+|.|..+.+ .+++.|+...+.. ..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN--KV 155 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--ce
Confidence 1 12222222 222222222 3456999999999965421 6888888776654 56
Q ss_pred CeEEEeccCCC---CCCchhhcCCCccc-cccccCCCCHHHHHHHHHHHhhcccCC----CCcchhHHHHHhhCCCCCHH
Q 005738 331 GVVVLAGTNRP---DILDKALLRPGRFD-RQITIDKPDIKGRDQIFQIYLKKLKLD----NEPSFYSQRLAALTPGFAGA 402 (680)
Q Consensus 331 ~ViVIaaTN~~---~~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~~~l~----~~~d~~l~~la~~t~G~sga 402 (680)
++.+|+.+|.. +.+||.+.+ +|. ..|.|++.+.++..+|++...+..-.+ .+.-..+..++....| ..+
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR 232 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DAR 232 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHH
Confidence 78999999965 467888877 553 468999999999999999887643222 2211112333444555 445
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 403 DIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 403 dL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
-.-.+|+.|+..|.+++...++.+++..|.+.+
T Consensus 233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 566889999999999999999999999995543
No 137
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=2.6e-12 Score=151.17 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=115.5
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCC-CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-----hhc
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIP-KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-----MFV 266 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p-~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-----~~~ 266 (680)
.|+|++++++.|.+.+...+..-. ....| ..+||+||||||||++|+++|..++.+|+.++++++.+ .++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 389999999999998875321100 01124 35899999999999999999999999999999998753 334
Q ss_pred cCchhHH-----HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------CCCCe
Q 005738 267 GVGPSRV-----RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---------TTAGV 332 (680)
Q Consensus 267 g~~~~~v-----r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------~~~~V 332 (680)
|.....+ ..+....+.+..|||||||||.+. . .+.+.|+..||.-. .-.++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~---~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------P---DVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------H---HHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 4321111 122333345556899999999882 2 24555555555210 11468
Q ss_pred EEEeccCCC-------------------------CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 333 VVLAGTNRP-------------------------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 333 iVIaaTN~~-------------------------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
++|+|||.- ..+.|.++. |+|..|.|++.+.++..+|+...+..
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999932 124577777 99999999999999999999887754
No 138
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.42 E-value=1.5e-12 Score=140.03 Aligned_cols=219 Identities=21% Similarity=0.233 Sum_probs=135.8
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeE--------
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFL-------- 254 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i-------- 254 (680)
.|..|+|++++|..|.-.+ -+|. ..+++|.|+||+|||++++++++.+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999998874322 1221 3579999999999999999999866 33332
Q ss_pred -Eeechh----------------hhhhhccCchhHHHHH--HHHH-------------HhcCCeEEEEcCcchhhhhcCC
Q 005738 255 -SMSGSD----------------FMEMFVGVGPSRVRSL--FQEA-------------RQCAPSIVFIDEIDAIGRARGR 302 (680)
Q Consensus 255 -~is~s~----------------~~~~~~g~~~~~vr~l--f~~A-------------~~~~P~ILfIDEiD~L~~~r~~ 302 (680)
..+|.. |.+.-.|..+.++-.. +..+ .+....+|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~----- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE----- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC-----
Confidence 011110 0111111111111110 0110 01223799999999882
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCC-----------CCCCCeEEEeccCCCC-CCchhhcCCCccccccccCCCCH-HHHH
Q 005738 303 GGFSGGNDERESTLNQLLVEMDGF-----------GTTAGVVVLAGTNRPD-ILDKALLRPGRFDRQITIDKPDI-KGRD 369 (680)
Q Consensus 303 ~~~~~~~~~~~~~l~~LL~~md~~-----------~~~~~ViVIaaTN~~~-~LD~aLlRpgRfd~~I~v~~Pd~-~eR~ 369 (680)
.. +.+.|+..|+.- ....++++|+++|..+ .+.++|+. ||..++.++.|+. ++|.
T Consensus 145 -------~~---~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 145 -------DH---LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred -------HH---HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 22 334444444321 1234688899988655 68999999 9999999998875 8888
Q ss_pred HHHHHHhhcc-------------------------------cCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 370 QIFQIYLKKL-------------------------------KLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 370 ~Il~~~l~~~-------------------------------~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
+|++...... .++...-..+..++..+..-+.+.-..+++-|...|+.+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 9987743210 011111112233444454335566667888888899999
Q ss_pred cCCcccHHHHHHHHHHHhc
Q 005738 419 ESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 419 ~~~~It~~d~~~Al~~v~~ 437 (680)
++..|+.+|+..+..-++.
T Consensus 293 GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=8.3e-12 Score=144.36 Aligned_cols=208 Identities=18% Similarity=0.252 Sum_probs=140.4
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe---------ec
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSM---------SG 258 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i---------s~ 258 (680)
..+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|+.+.+.-... +|
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 35799999999999998887652 34678899999999999999999999876421100 11
Q ss_pred hhhhhh-------hcc---CchhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 259 SDFMEM-------FVG---VGPSRVRSLFQEARQCA----PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 259 s~~~~~-------~~g---~~~~~vr~lf~~A~~~~----P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
..+.+. +-+ .+...++.+..++.... ..|++|||+|.+. ....+.|+..|+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls---------------~~a~naLLK~LE 146 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS---------------QAAFNAFLKTLE 146 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC---------------HHHHHHHHHHHh
Confidence 111100 001 12345677776664321 3599999999882 135677887777
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
.. ...+++|.+|+....|-++|++ |+ ..+.|..++.++....++..+++.++..+.+ .+..|+..+.| +.+++
T Consensus 147 ep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dlr~a 219 (614)
T PRK14971 147 EP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GMRDA 219 (614)
T ss_pred CC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 63 3456666666667888889988 77 5699999999999999998888776654433 24667777754 55566
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.+++...+..+ +.. |+.+++.+.+
T Consensus 220 l~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 220 LSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 66665544332 332 7777666554
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=5.8e-12 Score=149.26 Aligned_cols=163 Identities=26% Similarity=0.379 Sum_probs=115.4
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCC---CCCe-EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh---
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAK---IPKG-ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~---~p~g-vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~--- 264 (680)
+.|+|++++++.+.+.+...+ .|.. .|.| +||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 358899999888888776532 1221 2444 7899999999999999999999999999999987642
Q ss_pred --hccCch-----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------C
Q 005738 265 --FVGVGP-----SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---------T 328 (680)
Q Consensus 265 --~~g~~~-----~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------~ 328 (680)
+.|... .....+....+.+..+||+|||||.+. . .+.+.|+..||... .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------~---~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------P---DIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------H---HHHHHHHHhhccCeeecCCCcccC
Confidence 222211 122234444455666899999999772 2 24555555555421 1
Q ss_pred CCCeEEEeccCCCC-------------------------CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 329 TAGVVVLAGTNRPD-------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 329 ~~~ViVIaaTN~~~-------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
-.++++|+|||... .+.|.++. |||..+.|.+.+.++..+|++..+.+
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 23578999998531 24566766 99999999999999999999988764
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=7.5e-12 Score=127.15 Aligned_cols=192 Identities=22% Similarity=0.312 Sum_probs=135.3
Q ss_pred CCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
....+.+++++|++.+|+.|.+-...+- ...+..++||+|++|||||+++|++..+. |+.++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3567899999999999999987665432 22356899999999999999999999876 788999988776
Q ss_pred hhhhccCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--CCCCCeEEEecc
Q 005738 262 MEMFVGVGPSRVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF--GTTAGVVVLAGT 338 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~--~~~~~ViVIaaT 338 (680)
. .+..+++..+. ..+=|||+|++- + .. ++. ....|-..|||- ..+.+|++.+|+
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F---------e~-~d~---~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS-F---------EE-GDT---EYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC-C---------CC-CcH---HHHHHHHHhcCccccCCCcEEEEEec
Confidence 3 23455555543 234699999962 1 11 222 224444445553 356789999999
Q ss_pred CCCCCCch-----------------------hhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcch---hHHHH
Q 005738 339 NRPDILDK-----------------------ALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSF---YSQRL 392 (680)
Q Consensus 339 N~~~~LD~-----------------------aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~---~l~~l 392 (680)
|+-..+.. +|. .||...+.|..|+.++-.+|++.++...++..+.+. .....
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLs--DRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLS--DRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHH--HhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 97432211 233 399999999999999999999999988777665321 11334
Q ss_pred HhhCCCCCHHHHHHHHH
Q 005738 393 AALTPGFAGADIANVCN 409 (680)
Q Consensus 393 a~~t~G~sgadL~~lv~ 409 (680)
|....|.||+-..+.++
T Consensus 227 a~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 55667778876666555
No 142
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.2e-11 Score=134.69 Aligned_cols=226 Identities=19% Similarity=0.239 Sum_probs=153.8
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSD 260 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~ 260 (680)
.+..+|++.+.-+.-.....-....-..| ...-..++||||.|+|||+|++|+++++ +..+++++..+
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~-------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENP-------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhcc-------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 45778999665443222222222222222 1133578999999999999999999977 34588999999
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
|...++......-.+-|++-. +-.+++||+|+.+..+.. ...+.-.++|.+. ..++-+|+.+...
T Consensus 154 f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l~-------~~~kqIvltsdr~ 218 (408)
T COG0593 154 FTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNALL-------ENGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHHH-------hcCCEEEEEcCCC
Confidence 887766443333333455554 447999999999954321 1334445555554 3344677777667
Q ss_pred CCCC---chhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 341 PDIL---DKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 341 ~~~L---D~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
|..+ +|.|.+ ||. ..+.+.+|+.+.|..||+......++..+.+. ...++.+... +.++|..+++.....+
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~a 294 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAFA 294 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHHH
Confidence 7654 588888 886 46788899999999999998877766655443 4667776653 6788988888877666
Q ss_pred HHhcCCcccHHHHHHHHHHHhcc
Q 005738 416 ARNESAQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al~~v~~g 438 (680)
...++ .||.+.+.+++......
T Consensus 295 ~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 295 LFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HhcCc-cCcHHHHHHHHHHhhcc
Confidence 65554 89999999999876544
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=5.1e-12 Score=134.22 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=102.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh--hccCchh------H----HHHHHHHHHhcCCeEEEEcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM--FVGVGPS------R----VRSLFQEARQCAPSIVFIDE 292 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~--~~g~~~~------~----vr~lf~~A~~~~P~ILfIDE 292 (680)
.+++||.||||||||++++.+|..++.|++.++++...+. ++|...- . ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4689999999999999999999999999999998776554 3443211 0 1123444443 468999999
Q ss_pred cchhhhhcCCCCCCCCChHHHHHHHHHHHh-----hc----CCCCCCCeEEEeccCCCC------------CCchhhcCC
Q 005738 293 IDAIGRARGRGGFSGGNDERESTLNQLLVE-----MD----GFGTTAGVVVLAGTNRPD------------ILDKALLRP 351 (680)
Q Consensus 293 iD~L~~~r~~~~~~~~~~~~~~~l~~LL~~-----md----~~~~~~~ViVIaaTN~~~------------~LD~aLlRp 351 (680)
+|.. .......++.+|+. ++ .+.+...+.||||+|..+ .|++|++.
T Consensus 143 in~a------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAG------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhcc------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9876 23345566667652 11 123455789999999754 46889999
Q ss_pred CccccccccCCCCHHHHHHHHHHHhhc
Q 005738 352 GRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 352 gRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
||-..+.+++|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99778899999999999999876543
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=6.6e-12 Score=146.27 Aligned_cols=216 Identities=21% Similarity=0.266 Sum_probs=134.8
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-------------------- 249 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-------------------- 249 (680)
-|.+|+|++.+|..|.-.. .+|. ..|+||+|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999997764322 2221 2579999999999999999999876
Q ss_pred ---------------CCCeEEeechhhhhhhccCchhHHHHHHHHH---------HhcCCeEEEEcCcchhhhhcCCCCC
Q 005738 250 ---------------GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEA---------RQCAPSIVFIDEIDAIGRARGRGGF 305 (680)
Q Consensus 250 ---------------~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A---------~~~~P~ILfIDEiD~L~~~r~~~~~ 305 (680)
..||+.+.++......+|.- .+...+... .....+|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~-------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD-------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------
Confidence 24666665544333333321 011111100 01122699999999882
Q ss_pred CCCChHHHHHHHHHHHhhcCC-----------CCCCCeEEEeccCCC-CCCchhhcCCCccccccccCCCC-HHHHHHHH
Q 005738 306 SGGNDERESTLNQLLVEMDGF-----------GTTAGVVVLAGTNRP-DILDKALLRPGRFDRQITIDKPD-IKGRDQIF 372 (680)
Q Consensus 306 ~~~~~~~~~~l~~LL~~md~~-----------~~~~~ViVIaaTN~~-~~LD~aLlRpgRfd~~I~v~~Pd-~~eR~~Il 372 (680)
. .+.+.|+..|+.- ....++++|+++|.. ..|.++|+. ||+.++.++.|. .+++.+++
T Consensus 140 ----~---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 140 ----D---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ----H---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 2 2445555555421 112458999999954 368889999 999989888764 57777777
Q ss_pred HHHhhccc-------------------------CCC--Cc-chhHHHHHhhC--CCC-CHHHHHHHHHHHHHHHHHhcCC
Q 005738 373 QIYLKKLK-------------------------LDN--EP-SFYSQRLAALT--PGF-AGADIANVCNEAALIAARNESA 421 (680)
Q Consensus 373 ~~~l~~~~-------------------------l~~--~~-d~~l~~la~~t--~G~-sgadL~~lv~eAa~~a~r~~~~ 421 (680)
+....... +.. .+ +.....++... -|. +.+....+++-|...|+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~ 290 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRR 290 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 65322000 000 00 11112222221 234 3444556777777888899999
Q ss_pred cccHHHHHHHHHHHh
Q 005738 422 QITMQHFEAAIDRVI 436 (680)
Q Consensus 422 ~It~~d~~~Al~~v~ 436 (680)
.|+.+|+..|+.-++
T Consensus 291 ~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 291 RVTAEDVREAAELVL 305 (633)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998886
No 145
>PRK09087 hypothetical protein; Validated
Probab=99.32 E-value=6.3e-11 Score=121.07 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=114.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGF 305 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~ 305 (680)
..++|+||+|+|||+|+++++...++. +++..++...+ +..... .+|+|||+|.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~-------- 100 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGG-------- 100 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCC--------
Confidence 348999999999999999999887655 44444433221 111111 488999999761
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC---CchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhccc
Q 005738 306 SGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLK 380 (680)
Q Consensus 306 ~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~ 380 (680)
....+.-.++|.+. .....+||+++..|.. ..+.|++ ||. ..+.+..|+.++|.+|++.+++..+
T Consensus 101 -~~~~~lf~l~n~~~-------~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 101 -FDETGLFHLINSVR-------QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred -CCHHHHHHHHHHHH-------hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 11122222333332 3345577766665543 3678888 885 6889999999999999999998776
Q ss_pred CCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 381 LDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 381 l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
+..+.+. ++.|+.+..+ +.+.+..+++.....+.. .++.||...+.+++..+
T Consensus 171 ~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 6554443 5778887764 455666666665444443 34579999999888653
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=2.9e-11 Score=111.87 Aligned_cols=123 Identities=44% Similarity=0.663 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCchhH---HHHHHHHHHhcCCeEEEEcCcchhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVGPSR---VRSLFQEARQCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~~~~---vr~lf~~A~~~~P~ILfIDEiD~L~~ 298 (680)
.++++|+||||||||++++.+++.+ +.+++.+++.++........... ....+.......+++|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4689999999999999999999998 89999999887654432211111 12223344455689999999998721
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcCC-CCCCCeEEEeccCCCC--CCchhhcCCCccccccccC
Q 005738 299 ARGRGGFSGGNDERESTLNQLLVEMDGF-GTTAGVVVLAGTNRPD--ILDKALLRPGRFDRQITID 361 (680)
Q Consensus 299 ~r~~~~~~~~~~~~~~~l~~LL~~md~~-~~~~~ViVIaaTN~~~--~LD~aLlRpgRfd~~I~v~ 361 (680)
.....+.+++...... ....++.+|+++|... .+++.+.. ||+.++.++
T Consensus 99 ------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 ------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1122333333332111 1146788888988776 67778877 998777665
No 147
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=1e-10 Score=122.30 Aligned_cols=219 Identities=18% Similarity=0.291 Sum_probs=141.7
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeech----
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGS---- 259 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s---- 259 (680)
.-+|+..+++.|..+-+.+..|.. ..+.++||+|++|.|||++++.++... .+|++.+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 348999999999999888888865 235679999999999999999998743 3577777642
Q ss_pred --hhhhhh---cc------Cc-hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 005738 260 --DFMEMF---VG------VG-PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG 327 (680)
Q Consensus 260 --~~~~~~---~g------~~-~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~ 327 (680)
.|.... +| .. .+.-..+....+...+.+|+|||+|.+.. +.....+.++|.|-...+.+
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL- 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNEL- 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhcc-
Confidence 121110 11 11 11222344555677889999999999853 22333344444443332221
Q ss_pred CCCCeEEEeccCCCC--CCchhhcCCCccccccccCCCC-HHHHHHHHHHHhhcccCCCCcchh----HHHHHhhCCCCC
Q 005738 328 TTAGVVVLAGTNRPD--ILDKALLRPGRFDRQITIDKPD-IKGRDQIFQIYLKKLKLDNEPSFY----SQRLAALTPGFA 400 (680)
Q Consensus 328 ~~~~ViVIaaTN~~~--~LD~aLlRpgRfd~~I~v~~Pd-~~eR~~Il~~~l~~~~l~~~~d~~----l~~la~~t~G~s 400 (680)
+-.++.+++-.-.. .-|+.+.+ ||+ .+.+|... -++-..++..+-+.+++....... ...|-..+.|..
T Consensus 180 -~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 180 -QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred -CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 12344444322112 33788888 995 45555332 245566777777666655433222 345666788877
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 401 GADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 401 gadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
| ++.++++.|+..|.+++++.||.+.++..
T Consensus 256 G-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 G-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred H-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 5 79999999999999999999999887753
No 148
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=2.8e-11 Score=133.73 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=134.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
...+|+||+|.+.+..++.+.+... ++.+..|||.|.+||||.++|+++.+.. +.||+.+||+.+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3568999999999998888877653 3456789999999999999999999866 78999999976543
Q ss_pred h-----hccCc--------hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC-
Q 005738 264 M-----FVGVG--------PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG- 327 (680)
Q Consensus 264 ~-----~~g~~--------~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~- 327 (680)
. .+|.. ..--..+|+.|.. +-||+|||..+ ....+.-+...|++-+ ...
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem------------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM------------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC------------CHHHHHHHHHHHhhceEEecCC
Confidence 2 23321 1112345655544 79999999766 3455666666666522 111
Q ss_pred ---CCCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHHHH----HHHhh----cccCCCC-cc-h
Q 005738 328 ---TTAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQIF----QIYLK----KLKLDNE-PS-F 387 (680)
Q Consensus 328 ---~~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~Il----~~~l~----~~~l~~~-~d-~ 387 (680)
..-+|-||||||+. |- .++..|||- .++.+..|+..+|.+-+ .+++. +.+.... .. .
T Consensus 375 t~~~~vDVRIIAATN~n--L~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LE-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HH-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 23458999999963 22 233345653 36677889998886622 33333 2222111 11 1
Q ss_pred hHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 005738 388 YSQRLAALT-PGFAGADIANVCNEAALIAARNESAQITMQHFE 429 (680)
Q Consensus 388 ~l~~la~~t-~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~ 429 (680)
.+..|.+.. || +-++|+|++.++...+ .....|+.+|+.
T Consensus 452 a~~~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 122233322 33 3478888888877633 344457777766
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.26 E-value=1.1e-10 Score=139.78 Aligned_cols=163 Identities=27% Similarity=0.341 Sum_probs=111.7
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCe-EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKG-ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~g-vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--- 264 (680)
+.|+|++++.+.+.+.+...+..-. ....|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999998887765321100 0123665 7899999999999999999988 457899999988643
Q ss_pred ---------hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------
Q 005738 265 ---------FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-------- 327 (680)
Q Consensus 265 ---------~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-------- 327 (680)
|+|..+.. .+....+++..+||+|||||.. ++ .+.+.|+..+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka------------~~---~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA------------HP---DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc------------CH---HHHHHHHHHhhcceeecCCCcE
Confidence 33333221 1334445567799999999865 22 24445555554321
Q ss_pred -CCCCeEEEeccCCCC-----------------------------CCchhhcCCCccccccccCCCCHHHHHHHHHHHhh
Q 005738 328 -TTAGVVVLAGTNRPD-----------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK 377 (680)
Q Consensus 328 -~~~~ViVIaaTN~~~-----------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 377 (680)
.-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|++..+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 014588899988421 14566776 897 889999999999999988775
Q ss_pred c
Q 005738 378 K 378 (680)
Q Consensus 378 ~ 378 (680)
.
T Consensus 782 ~ 782 (852)
T TIGR03345 782 R 782 (852)
T ss_pred H
Confidence 4
No 150
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=2.1e-10 Score=124.49 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=123.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------CeEEe---
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV-------PFLSM--- 256 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~-------~~i~i--- 256 (680)
....|++|+|++++++.|...+.. .+.|+.+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 455799999999999999887763 456889999999999999999999998754 21111
Q ss_pred -echhhhh---h----h--c-------------cCchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCC
Q 005738 257 -SGSDFME---M----F--V-------------GVGPSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGFSGGN 309 (680)
Q Consensus 257 -s~s~~~~---~----~--~-------------g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~~~~~ 309 (680)
.|..+.. . + + ..+-..+|.+.+... .....|++|||+|.+.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 1111100 0 0 1 011234555443332 2234699999999982
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhH
Q 005738 310 DERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYS 389 (680)
Q Consensus 310 ~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l 389 (680)
....|.||..++. +..+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++++....... .+ +..+
T Consensus 155 ---~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~-~~~~ 223 (351)
T PRK09112 155 ---RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SD-GEIT 223 (351)
T ss_pred ---HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CC-HHHH
Confidence 2345778888876 33455555667888888899988 88 6899999999999999987432211 11 1223
Q ss_pred HHHHhhCCCCCHHHHHHHHH
Q 005738 390 QRLAALTPGFAGADIANVCN 409 (680)
Q Consensus 390 ~~la~~t~G~sgadL~~lv~ 409 (680)
..++..+.| +++...++++
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHh
Confidence 556666665 4444444444
No 151
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.24 E-value=5.6e-11 Score=135.13 Aligned_cols=213 Identities=23% Similarity=0.323 Sum_probs=127.8
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM- 264 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~- 264 (680)
.+|++++|.+.+.+.+.+.+..+.. .+.+|||+|++||||+++|+++.... +.||+.++|+.+-+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 5799999999999999888765432 34689999999999999999998754 679999999865322
Q ss_pred ----hccCch--------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC---
Q 005738 265 ----FVGVGP--------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG--- 327 (680)
Q Consensus 265 ----~~g~~~--------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~--- 327 (680)
.+|... ..-..+|+.|. .+.||||||+.|. ...+..+..+|.+-. ...
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP------------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC------------HHHHHHHHHHHhcCcEEecCCCc
Confidence 233211 01123455443 3799999999982 334445555554321 111
Q ss_pred -CCCCeEEEeccCCCCCCchhhcCCCcccc-------ccccCCCCHHHHHH----HHHHHhhcc----cCCCCcchhHHH
Q 005738 328 -TTAGVVVLAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQIYLKKL----KLDNEPSFYSQR 391 (680)
Q Consensus 328 -~~~~ViVIaaTN~~~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~----Il~~~l~~~----~l~~~~d~~l~~ 391 (680)
...++-+|++||..-. .+...|+|.. .+.+..|+..+|.+ ++++++++. ....+.+. +..
T Consensus 344 ~~~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~~ 419 (526)
T TIGR02329 344 PVPVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQV 419 (526)
T ss_pred eeeecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HHH
Confidence 1224678888885421 1222334432 46677888888765 334444433 11111111 111
Q ss_pred -------HHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 392 -------LAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 392 -------la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
|....---+-++|++++.+++..+.......|+.+++..
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 333332224478888888877654322345677777653
No 152
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.24 E-value=2.3e-10 Score=117.17 Aligned_cols=131 Identities=21% Similarity=0.280 Sum_probs=88.5
Q ss_pred CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC-------------CCCCchhhcC
Q 005738 284 APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR-------------PDILDKALLR 350 (680)
Q Consensus 284 ~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~-------------~~~LD~aLlR 350 (680)
-|++|||||++.| +-+ .+..|-..++. +-.-+||.+||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhML------------DiE---cFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML------------DIE---CFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred cCcceEeeehhhh------------hhH---HHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 3778888888777 112 23333333332 222356666775 4456777777
Q ss_pred CCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 351 PGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 351 pgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
|+ ..|..-+.+.++.++|++...+..++..+.+. +..++.....-|-+..-+|+.-|.+.|...++..|..+|+++
T Consensus 358 --Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a-~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee 433 (456)
T KOG1942|consen 358 --RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEA-LDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEE 433 (456)
T ss_pred --he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHH-HHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHH
Confidence 66 45666677888999999998887666554432 456666655556667777777788888888999999999999
Q ss_pred HHHHHh
Q 005738 431 AIDRVI 436 (680)
Q Consensus 431 Al~~v~ 436 (680)
+-+-.+
T Consensus 434 ~~~Lf~ 439 (456)
T KOG1942|consen 434 VTELFL 439 (456)
T ss_pred HHHHHH
Confidence 876544
No 153
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.24 E-value=5.2e-11 Score=135.34 Aligned_cols=212 Identities=22% Similarity=0.322 Sum_probs=125.8
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHh-----------cCCCeEEee
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGE-----------SGVPFLSMS 257 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e-----------~~~~~i~is 257 (680)
.+|++++|.+.+.+.+.+.+..+.. .+.+|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4699999999999999888775432 2468999999999999999999887 467999999
Q ss_pred chhhhhh-----hccCchh--------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 258 GSDFMEM-----FVGVGPS--------RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 258 ~s~~~~~-----~~g~~~~--------~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
|+.+.+. .+|.... .-..+|+.|. .+.||||||+.|. ...+..+..+|++-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP------------LPLQTRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC------------HHHHHHHHhhhhcCe
Confidence 9875322 2332110 1123455443 3799999999982 334445555554321
Q ss_pred --CCC----CCCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhhc----ccCCC
Q 005738 325 --GFG----TTAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLKK----LKLDN 383 (680)
Q Consensus 325 --~~~----~~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~----~~l~~ 383 (680)
... ...++.+|++||.. |. .+...|+|. ..+.+..|+..+|.+ ++++++++ .+...
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 111 12346889998853 22 223334553 246778888888865 34455543 22221
Q ss_pred Ccchh------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 005738 384 EPSFY------SQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHF 428 (680)
Q Consensus 384 ~~d~~------l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~ 428 (680)
..+.. ...|....---+-++|++++++++..+.......|+.+++
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 11110 0122222222244788888888776543222234555544
No 154
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.5e-10 Score=124.51 Aligned_cols=179 Identities=19% Similarity=0.181 Sum_probs=120.9
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------------- 253 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~------------- 253 (680)
...++++|+|++++++.|.+.+.. .++|+.+||+||+|+||+++|.++|+.+-+.-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 455899999999999999887663 45788999999999999999999999763210
Q ss_pred E--Eeech-----------hhhhhhc---c--------CchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCC
Q 005738 254 L--SMSGS-----------DFMEMFV---G--------VGPSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGF 305 (680)
Q Consensus 254 i--~is~s-----------~~~~~~~---g--------~~~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~ 305 (680)
+ .-.|. ++..... + ..-..+|++.+.+. ...|.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0 00111 1100000 1 11234666555443 2357799999999882
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCc
Q 005738 306 SGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEP 385 (680)
Q Consensus 306 ~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~ 385 (680)
....|.||+.++. +..++++|.+|+.++.+.+.+++ |+ ..+.+++|+.++..+++...... . .
T Consensus 155 -------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~-~ 217 (365)
T PRK07471 155 -------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L-P 217 (365)
T ss_pred -------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-C
Confidence 2456777777775 44566777888989999999887 87 68999999999998888775421 1 1
Q ss_pred chhHHHHHhhCCCCCH
Q 005738 386 SFYSQRLAALTPGFAG 401 (680)
Q Consensus 386 d~~l~~la~~t~G~sg 401 (680)
+..+..++..+.|-.+
T Consensus 218 ~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 218 DDPRAALAALAEGSVG 233 (365)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 1112456666766443
No 155
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=3.2e-10 Score=118.19 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=118.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC-CeE--E-ee----chhhhhh---hccCch------hHHHHH---H-HHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV-PFL--S-MS----GSDFMEM---FVGVGP------SRVRSL---F-QEARQCA 284 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~-~~i--~-is----~s~~~~~---~~g~~~------~~vr~l---f-~~A~~~~ 284 (680)
..++|+||+|+|||++++.+++++.. .+. . ++ ..++... ..|... ...+.+ + .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999998752 222 1 11 1122111 122211 111222 1 2233556
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC---CCc----hhhcCCCccccc
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD---ILD----KALLRPGRFDRQ 357 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~---~LD----~aLlRpgRfd~~ 357 (680)
+.+|+|||+|.+.. .....+..+..... .....+.|+.+ ..++ .+. ..+.+ |+...
T Consensus 124 ~~vliiDe~~~l~~------------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~ 186 (269)
T TIGR03015 124 RALLVVDEAQNLTP------------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIAS 186 (269)
T ss_pred CeEEEEECcccCCH------------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeee
Confidence 78999999998721 11223333322211 11222332333 2222 221 13444 77778
Q ss_pred cccCCCCHHHHHHHHHHHhhcccCCC---CcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 005738 358 ITIDKPDIKGRDQIFQIYLKKLKLDN---EPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 358 I~v~~Pd~~eR~~Il~~~l~~~~l~~---~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
+.+++.+.++..+++...+...+... -.+..++.|.+.+.|.. +.|..+|+.+...|..++...|+.++++.++..
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 89999999999999998887554321 12234678899999976 569999999999998999999999999999875
Q ss_pred H
Q 005738 435 V 435 (680)
Q Consensus 435 v 435 (680)
+
T Consensus 266 ~ 266 (269)
T TIGR03015 266 I 266 (269)
T ss_pred h
Confidence 3
No 156
>PHA02244 ATPase-like protein
Probab=99.23 E-value=3.5e-10 Score=121.68 Aligned_cols=125 Identities=26% Similarity=0.270 Sum_probs=83.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc---CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG---VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARG 301 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g---~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~ 301 (680)
..++||+||||||||++|+++|..++.||+.+++..-.....| ........-|-.|.. ..++|+|||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~---- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASI---- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCC----
Confidence 4579999999999999999999999999999985310001111 111111122333333 45899999998772
Q ss_pred CCCCCCCChHHHHHHHHHHHh-----hcC-CCCCCCeEEEeccCCC-----------CCCchhhcCCCccccccccCCCC
Q 005738 302 RGGFSGGNDERESTLNQLLVE-----MDG-FGTTAGVVVLAGTNRP-----------DILDKALLRPGRFDRQITIDKPD 364 (680)
Q Consensus 302 ~~~~~~~~~~~~~~l~~LL~~-----md~-~~~~~~ViVIaaTN~~-----------~~LD~aLlRpgRfd~~I~v~~Pd 364 (680)
......++.++.. .++ +....++.+|+|+|.+ ..|+++++. || ..+.++.|+
T Consensus 194 --------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~ 262 (383)
T PHA02244 194 --------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDE 262 (383)
T ss_pred --------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCc
Confidence 2334455555532 111 1234678999999973 568999999 99 579999998
Q ss_pred H
Q 005738 365 I 365 (680)
Q Consensus 365 ~ 365 (680)
.
T Consensus 263 ~ 263 (383)
T PHA02244 263 K 263 (383)
T ss_pred H
Confidence 4
No 157
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=3.5e-10 Score=127.72 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=136.2
Q ss_pred CCCcccccccccchHHHHHHHHHHHHhcChhhHh----hh------------------cCCCC-CeEEEEcCCCChHHHH
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYE----EL------------------GAKIP-KGALLVGPPGTGKTLL 241 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~----~~------------------g~~~p-~gvLL~GppGtGKT~L 241 (680)
....-.|.|+.|-+.+-+++.-++... ++..|. ++ -.+++ +-+||+||||.|||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 344567999999998887776665431 111221 11 11122 4588999999999999
Q ss_pred HHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHh--------cCCeEEEEcCcchhhhhcCCCCCCCCChHHH
Q 005738 242 AKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQ--------CAPSIVFIDEIDAIGRARGRGGFSGGNDERE 313 (680)
Q Consensus 242 AralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~--------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~ 313 (680)
|+.+|+++|..++.+|+||-. +...++.-+..|.. ..|..|+|||||-- ....-
T Consensus 343 AHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------------~~~~V 404 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------------PRAAV 404 (877)
T ss_pred HHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC------------cHHHH
Confidence 999999999999999999843 23334443333322 46889999999742 22223
Q ss_pred HHHHHHHHh----hcCCCC---------C---CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhh
Q 005738 314 STLNQLLVE----MDGFGT---------T---AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK 377 (680)
Q Consensus 314 ~~l~~LL~~----md~~~~---------~---~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 377 (680)
.++..++.. ..|-.. + -..-|||.||..- -|||+.---|-..+.|.+|...-..+-|+..+.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 344444431 111100 0 1146888888543 466642224778899999998888888888888
Q ss_pred cccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 005738 378 KLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNES 420 (680)
Q Consensus 378 ~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~ 420 (680)
+.++..+... +..|+..+.+ ||++.+|.-...+.+..+
T Consensus 483 rE~mr~d~~a-L~~L~el~~~----DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 483 RENMRADSKA-LNALCELTQN----DIRSCINTLQFLASNVDR 520 (877)
T ss_pred hhcCCCCHHH-HHHHHHHhcc----hHHHHHHHHHHHHHhccc
Confidence 7777665432 4566666654 999999998887765433
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1.9e-10 Score=123.16 Aligned_cols=172 Identities=16% Similarity=0.291 Sum_probs=117.9
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------eEEeechhh
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------FLSMSGSDF 261 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~--------~i~is~s~~ 261 (680)
+|+||+|++.+++.|...+. ..+.|+..||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999999888764 24567889999999999999999999976332 22222110
Q ss_pred hhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 262 MEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
. ...+-..+|++.+.+.. ....|++||++|.+. ....|.||..++. ++.++++|.+
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~---------------~~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT---------------EQAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC---------------HHHHHHHHHHhcC--CCCCeEEEEE
Confidence 0 01123457776665432 234699999998882 2356778888876 4556666666
Q ss_pred cCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCH
Q 005738 338 TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAG 401 (680)
Q Consensus 338 TN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sg 401 (680)
|+.++.+-|.+++ |+ ..+.+..|+.++....+...... . + +..+..++..+.|-.+
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~--~-~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I--K-EEEKKSAIAFSDGIPG 185 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C--C-HHHHHHHHHHcCCCHH
Confidence 7788999999998 77 58999999998888777665431 1 1 1113456666655433
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=1.9e-10 Score=127.65 Aligned_cols=214 Identities=16% Similarity=0.097 Sum_probs=125.6
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechh-hhhhhccCc
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSD-FMEMFVGVG 269 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~-~~~~~~g~~ 269 (680)
.++|.+++.+.+...+. ...++||+||||||||++|++++..++. +|....+.- ..+..+|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 46777776666544332 2367999999999999999999997643 555444421 112223321
Q ss_pred -hhHH--HHHHHHHHhc---CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCCeEEE
Q 005738 270 -PSRV--RSLFQEARQC---APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------TTAGVVVL 335 (680)
Q Consensus 270 -~~~v--r~lf~~A~~~---~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~~~~ViVI 335 (680)
-... ...|...... ...+||+|||..+. ..+.+.||..|+.-. +-+..+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras---------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG---------------PAILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC---------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0000 1122211110 23499999997552 235666666663211 11123455
Q ss_pred eccCCCC---CCchhhcCCCccccccccCCCC-HHHHHHHHHHHhhc--ccC-----------------------CCCcc
Q 005738 336 AGTNRPD---ILDKALLRPGRFDRQITIDKPD-IKGRDQIFQIYLKK--LKL-----------------------DNEPS 386 (680)
Q Consensus 336 aaTN~~~---~LD~aLlRpgRfd~~I~v~~Pd-~~eR~~Il~~~l~~--~~l-----------------------~~~~d 386 (680)
+|||... ...+++.. ||-..+.+++|+ .++-.+++...... ... +..+-
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5557432 23358888 998889999997 45557777653221 101 00011
Q ss_pred hhHHHHHhh---C---CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc
Q 005738 387 FYSQRLAAL---T---PGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 387 ~~l~~la~~---t---~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g 438 (680)
..+..|... + ...|++--..+++-|...|..+++..|+.+|+. .+..++..
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 112233321 2 237888888899988888999999999999999 66666554
No 160
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=2.8e-10 Score=122.75 Aligned_cols=133 Identities=32% Similarity=0.414 Sum_probs=87.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh--hccCchhHHH----HHHHHHH--hcCC--eEEEEcCcch
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM--FVGVGPSRVR----SLFQEAR--QCAP--SIVFIDEIDA 295 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~--~~g~~~~~vr----~lf~~A~--~~~P--~ILfIDEiD~ 295 (680)
+++||.||||||||++|+.+|..++.+|+.++|...... ..|...-... ..|.... -... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 578999999999999999999999999999999765432 2222111100 0000000 0001 4999999976
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHHHhhcC----------CCCCCCeEEEeccC-----CCCCCchhhcCCCcccccccc
Q 005738 296 IGRARGRGGFSGGNDERESTLNQLLVEMDG----------FGTTAGVVVLAGTN-----RPDILDKALLRPGRFDRQITI 360 (680)
Q Consensus 296 L~~~r~~~~~~~~~~~~~~~l~~LL~~md~----------~~~~~~ViVIaaTN-----~~~~LD~aLlRpgRfd~~I~v 360 (680)
. +.. +.+.|+..|+. +.-...++||+|+| ....|++|+++ ||-..+.+
T Consensus 124 a------------~p~---~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 124 A------------PPE---VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred C------------CHH---HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 5 233 44445544443 33456789999999 44568999999 99889999
Q ss_pred CCCCHH-HHHHHHHHH
Q 005738 361 DKPDIK-GRDQIFQIY 375 (680)
Q Consensus 361 ~~Pd~~-eR~~Il~~~ 375 (680)
+.|+.+ +...++...
T Consensus 187 ~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 187 DYPDSEEEERIILARV 202 (329)
T ss_pred CCCCchHHHHHHHHhC
Confidence 999444 444444443
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=3.2e-10 Score=136.54 Aligned_cols=163 Identities=25% Similarity=0.365 Sum_probs=110.9
Q ss_pred cccccchHHHHHHHHHHHHhc----ChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 005738 192 KDVAGCDEAKQEIMEFVHFLK----NPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~----~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~ 264 (680)
+.|+|++.+.+.+.+.+...+ +|. ++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 569999999999998877532 221 223458899999999999999999977 568999999887542
Q ss_pred -----hccCchh-----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-------
Q 005738 265 -----FVGVGPS-----RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG------- 327 (680)
Q Consensus 265 -----~~g~~~~-----~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~------- 327 (680)
..|.... .-..+....+.+..+||+||||+.+ +.. +.+.|+..|+.-.
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------~~~---v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------HPD---VFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------CHH---HHHHHHHHHhcCceecCCCe
Confidence 2221111 1122333344455579999999876 233 3444444443210
Q ss_pred --CCCCeEEEeccCCCC-------------------------CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 328 --TTAGVVVLAGTNRPD-------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 328 --~~~~ViVIaaTN~~~-------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
.-.+.+||+|||... .+.|.|+. |+|..+.+.+++.++..+|+...+..
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 123578999999621 12356666 99999999999999999999887753
No 162
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.20 E-value=8.8e-11 Score=125.14 Aligned_cols=66 Identities=41% Similarity=0.637 Sum_probs=52.3
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhhh
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFM 262 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~~~ 262 (680)
..+-++|+.++.+..--+++.++..+. ..+++||.||||||||.||-++|+++| +||+.+++|++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 356899999999999999998876543 347999999999999999999999996 899999998764
No 163
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=3.2e-10 Score=136.12 Aligned_cols=164 Identities=26% Similarity=0.327 Sum_probs=112.2
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCe-EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKG-ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~g-vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--- 264 (680)
+.|+|++++++.+...+...+..-. ....|.+ +||+||+|||||++|+++|..+ +.+++.++.+++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5689999999999887764221000 0122444 7899999999999999999987 468999998887532
Q ss_pred ---------hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------
Q 005738 265 ---------FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-------- 327 (680)
Q Consensus 265 ---------~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-------- 327 (680)
|+|..+ ...+....+.+..+||+|||+|.+ +. .+.+.|+..||.-.
T Consensus 585 ~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka------------~~---~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 585 SKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA------------HP---DIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred HHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC------------CH---HHHHHHHHHhccCceecCCCcE
Confidence 222222 223444555555589999999977 22 24555555555311
Q ss_pred -CCCCeEEEeccCCCCC-------------------------------------CchhhcCCCccccccccCCCCHHHHH
Q 005738 328 -TTAGVVVLAGTNRPDI-------------------------------------LDKALLRPGRFDRQITIDKPDIKGRD 369 (680)
Q Consensus 328 -~~~~ViVIaaTN~~~~-------------------------------------LD~aLlRpgRfd~~I~v~~Pd~~eR~ 369 (680)
.-.+.++|+|||.... +.|.++. |+|..|.|.+.+.++..
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~ 725 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVW 725 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHH
Confidence 1246889999884311 2245666 99999999999999999
Q ss_pred HHHHHHhhc
Q 005738 370 QIFQIYLKK 378 (680)
Q Consensus 370 ~Il~~~l~~ 378 (680)
+|++..+..
T Consensus 726 ~Iv~~~l~~ 734 (821)
T CHL00095 726 EIAEIMLKN 734 (821)
T ss_pred HHHHHHHHH
Confidence 999888764
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=3.6e-10 Score=135.79 Aligned_cols=167 Identities=25% Similarity=0.338 Sum_probs=110.8
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCC-CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIP-KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-- 264 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p-~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-- 264 (680)
++.|+|++.+.+.+.+.+...+..-. ....| ..+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 55799999999999888875331100 00123 358899999999999999999876 567999999887543
Q ss_pred ---hccCchh----HHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--C-------
Q 005738 265 ---FVGVGPS----RVRSLFQEAR-QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF--G------- 327 (680)
Q Consensus 265 ---~~g~~~~----~vr~lf~~A~-~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~--~------- 327 (680)
.+|.... .-...+..+. ....++|+|||++.+ +.. +.+.|+..++.- .
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------------~~~---v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------------HPD---VFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC------------CHH---HHHHHHHHHhhCceecCCceEE
Confidence 2221110 0012233333 333489999999876 233 334444444321 0
Q ss_pred CCCCeEEEeccCCC-------------------------CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 328 TTAGVVVLAGTNRP-------------------------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 328 ~~~~ViVIaaTN~~-------------------------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
.-.+.+||+|||.. ..+.|+|+. |+|..+.+.+++.++..+|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11346788899862 124567877 99999999999999999999888765
No 165
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-10 Score=128.93 Aligned_cols=210 Identities=26% Similarity=0.435 Sum_probs=131.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM- 264 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~- 264 (680)
..+.+++|.+.+.+++.+.+..+... ...|||+|++||||-++||+|.... +.||+.+||..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45789999999999999999876544 4589999999999999999999866 569999999765422
Q ss_pred ----hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh--hcCCCC---
Q 005738 265 ----FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE--MDGFGT--- 328 (680)
Q Consensus 265 ----~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~--md~~~~--- 328 (680)
.+|... .+-...|+.|.. +.||||||..+ .-+.+.-+...|++ +.....
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m------------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM------------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC------------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 333211 111235655544 79999999776 33444455555543 111211
Q ss_pred -CCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhhc----ccCCCCcchhHHHH
Q 005738 329 -TAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLKK----LKLDNEPSFYSQRL 392 (680)
Q Consensus 329 -~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~----~~l~~~~d~~l~~l 392 (680)
+-+|-||++||+. |. .....|||- .++.+..|...+|.+ ++++++++ .+.. ...+.-+.+
T Consensus 273 i~vdvRiIaaT~~d--L~-~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~~a~ 348 (464)
T COG2204 273 IKVDVRIIAATNRD--LE-EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSPEAL 348 (464)
T ss_pred cceeeEEEeecCcC--HH-HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCHHHH
Confidence 2358899999963 22 223335553 477888999998876 33444433 2211 112222333
Q ss_pred HhhC-CCCCH--HHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 393 AALT-PGFAG--ADIANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 393 a~~t-~G~sg--adL~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
+... ..+.| ++|+|++.+++..+ ....|+.+|+..
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~~ 386 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLPL 386 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhccc
Confidence 3332 22333 66777777665544 556677666543
No 166
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.19 E-value=2.1e-10 Score=129.63 Aligned_cols=214 Identities=23% Similarity=0.276 Sum_probs=128.6
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-------------------
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES------------------- 249 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~------------------- 249 (680)
..|+||.|++.+++.+.-.+ .....++|.||||||||++++++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47999999998876654322 123679999999999999999998632
Q ss_pred ---------CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHH
Q 005738 250 ---------GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLL 320 (680)
Q Consensus 250 ---------~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL 320 (680)
..||....++.-....+|.+...-...+..| ..++|||||++.+. ...+..|.+.|
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~------------~~~~~~L~~~L 319 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK------------RSVLDALREPI 319 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC------------HHHHHHHHHHH
Confidence 1234333333222222333211111233333 23799999999872 22334444444
Q ss_pred Hhhc----C----CCCCCCeEEEeccCCC------C-----------------CCchhhcCCCccccccccCCCCHHH--
Q 005738 321 VEMD----G----FGTTAGVVVLAGTNRP------D-----------------ILDKALLRPGRFDRQITIDKPDIKG-- 367 (680)
Q Consensus 321 ~~md----~----~~~~~~ViVIaaTN~~------~-----------------~LD~aLlRpgRfd~~I~v~~Pd~~e-- 367 (680)
+.-. . ..-..++.+|+++|.. + .+...|+. |||.++.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 3200 0 0113468999999953 1 47778888 999999998765432
Q ss_pred -----------HHHHHHHHh------hcc---cCCCC-----------cchhHHHH---HhhCCCCCHHHHHHHHHHHHH
Q 005738 368 -----------RDQIFQIYL------KKL---KLDNE-----------PSFYSQRL---AALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 368 -----------R~~Il~~~l------~~~---~l~~~-----------~d~~l~~l---a~~t~G~sgadL~~lv~eAa~ 413 (680)
|..+.+.+- +.. ..... .+.....+ +....++|.+....+++-|.-
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 222322211 110 11100 01001111 222346899999999999999
Q ss_pred HHHHhcCCcccHHHHHHHHH
Q 005738 414 IAARNESAQITMQHFEAAID 433 (680)
Q Consensus 414 ~a~r~~~~~It~~d~~~Al~ 433 (680)
+|..++.+.|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999974
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.3e-10 Score=129.76 Aligned_cols=204 Identities=21% Similarity=0.307 Sum_probs=141.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEee
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMS 257 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is 257 (680)
.-+++-|+|-++.++++.+++.. . ...+-+|.|+||+|||.++..+|... +..+++++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R---R---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR---R---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc---c---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 44688899999888887776653 1 12455899999999999999999864 45577888
Q ss_pred chhhh--hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 258 GSDFM--EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 258 ~s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
.+.++ .+|.|+.+.+++.+.+......+.||||||||.+.+..+.. ++.-...+.+...| .++.+-+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~a~DAaNiLKPaL-------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GGAMDAANLLKPAL-------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---ccccchhhhhHHHH-------hcCCeEEE
Confidence 77776 34889999999999999998889999999999997654321 11112223444433 45678899
Q ss_pred eccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCc---chhHHHHHhhC-----CCCCHH
Q 005738 336 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEP---SFYSQRLAALT-----PGFAGA 402 (680)
Q Consensus 336 aaTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~---d~~l~~la~~t-----~G~sga 402 (680)
++|...+ .=|+||-| || ..|.+..|+.++-..||+-.-.++...+.+ |..+...+..+ .-|-|.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPD 380 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPD 380 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCc
Confidence 9987433 24999999 99 679999999999999998766555433332 22222222222 223333
Q ss_pred HHHHHHHHHHHHHH
Q 005738 403 DIANVCNEAALIAA 416 (680)
Q Consensus 403 dL~~lv~eAa~~a~ 416 (680)
---.|+.+|+....
T Consensus 381 KAIDLiDeA~a~~~ 394 (786)
T COG0542 381 KAIDLLDEAGARVR 394 (786)
T ss_pred hHHHHHHHHHHHHH
Confidence 44567777765443
No 168
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=9.4e-11 Score=127.48 Aligned_cols=199 Identities=25% Similarity=0.377 Sum_probs=124.4
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFM 262 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~ 262 (680)
....+.+++|.+..-+++.+-+..+. +....||++|++||||+++|++|+... +.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34578999999999999988877621 223679999999999999999998543 6799999998875
Q ss_pred hh-------------hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh-----hc
Q 005738 263 EM-------------FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE-----MD 324 (680)
Q Consensus 263 ~~-------------~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~-----md 324 (680)
+. |.| ....-..+|++|-. ++||+|||+.+- .+.+..+..+|.. +.
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~LP------------~~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRLP------------PEGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhCC------------HhHHHHHHHHHHcCceEecC
Confidence 33 222 12222446666654 799999999882 3334445555443 11
Q ss_pred CC-CCCCCeEEEeccCCCCCCchhhcC-CC---ccccccccCCCCHHHHHH--------HHHHHhhcccCCCCcch--hH
Q 005738 325 GF-GTTAGVVVLAGTNRPDILDKALLR-PG---RFDRQITIDKPDIKGRDQ--------IFQIYLKKLKLDNEPSF--YS 389 (680)
Q Consensus 325 ~~-~~~~~ViVIaaTN~~~~LD~aLlR-pg---Rfd~~I~v~~Pd~~eR~~--------Il~~~l~~~~l~~~~d~--~l 389 (680)
+- ....+|.+|+|||- .++.+++. .. |. ..+.+..|+.++|.+ +++.++++.+.+..... ..
T Consensus 207 ~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 207 GSQPRPVDVRLICATTE--DLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred CCCCcCCCceeeecccc--CHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 10 12356889999883 33333332 00 22 245666788877754 33344455555443332 22
Q ss_pred HHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 005738 390 QRLAAL-TPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 390 ~~la~~-t~G~sgadL~~lv~eAa~~a 415 (680)
..+-.. .+| +-++|+|++..++..+
T Consensus 284 ~~L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 284 RALLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 333332 344 4478999998887665
No 169
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.16 E-value=3.8e-10 Score=121.60 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=116.8
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh---
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME--- 263 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~--- 263 (680)
-|++++|.+...+.+.+.+..+. ..+.+|||+|++||||+++|+++.... +.||+.++|+.+-+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999999999988887653 235689999999999999999998765 57999999987532
Q ss_pred --hhccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-------
Q 005738 264 --MFVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG------- 327 (680)
Q Consensus 264 --~~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~------- 327 (680)
.++|... ......|..| ..+.|||||||.|. ...+..+..++..-. +.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~-~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MLVQEKLLRVIEYGE-LERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC------------HHHHHHHHHHHhcCc-EEeCCCCce
Confidence 1223211 0111233333 34799999999983 233444444443311 11
Q ss_pred CCCCeEEEeccCCC-------CCCchhhcCCCccccccccCCCCHHHHHH----HHHHHhhcc----cCC--CCcc-hhH
Q 005738 328 TTAGVVVLAGTNRP-------DILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQIYLKKL----KLD--NEPS-FYS 389 (680)
Q Consensus 328 ~~~~ViVIaaTN~~-------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~~----~l~--~~~d-~~l 389 (680)
.+.++.||++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++++++... +.. ...+ ..+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 12357888888753 234455555 552 45677788877755 344444322 211 1111 112
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 390 QRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 390 ~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
..|....---+-++|++++++|+..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 3333333222346777887776653
No 170
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.16 E-value=4.2e-10 Score=130.07 Aligned_cols=192 Identities=18% Similarity=0.192 Sum_probs=122.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhhhhhhccCchhHHHHHHHHH---------HhcCCeEEEEcCcc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFMEMFVGVGPSRVRSLFQEA---------RQCAPSIVFIDEID 294 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~~~~~~~g~~~~~vr~lf~~A---------~~~~P~ILfIDEiD 294 (680)
.+|||.|+||||||++|++++..+. .||+.+..+...+..+|.. .+...+... .....++||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 5899999999999999999999774 4788887643333334431 111111100 01123699999999
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCCeEEEeccCCCC---CCchhhcCCCcccccccc
Q 005738 295 AIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TTAGVVVLAGTNRPD---ILDKALLRPGRFDRQITI 360 (680)
Q Consensus 295 ~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~~~ViVIaaTN~~~---~LD~aLlRpgRfd~~I~v 360 (680)
.+.+ .+.+.|+..|+.-. ....+.||+++|..+ .|.++|+. ||+.++.+
T Consensus 95 rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 95 LLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 8832 34455555554211 124588999999765 78999999 99988777
Q ss_pred C-CCCHHHHHHHHHHHhhccc---------------------CCCCc-chhHHHHHhh--CCCCC-HHHHHHHHHHHHHH
Q 005738 361 D-KPDIKGRDQIFQIYLKKLK---------------------LDNEP-SFYSQRLAAL--TPGFA-GADIANVCNEAALI 414 (680)
Q Consensus 361 ~-~Pd~~eR~~Il~~~l~~~~---------------------l~~~~-d~~l~~la~~--t~G~s-gadL~~lv~eAa~~ 414 (680)
. .|+.++|.+|++.++.... ....+ +..+..++.. .-|.+ .+.-..+++-|...
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 6 5677889999987652110 00000 1111222221 12333 34444667777778
Q ss_pred HHHhcCCcccHHHHHHHHHHHh
Q 005738 415 AARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~~v~ 436 (680)
|+.+++..|+.+|+..|+.-++
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHHh
Confidence 8889999999999999998885
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2e-10 Score=133.24 Aligned_cols=161 Identities=27% Similarity=0.419 Sum_probs=116.9
Q ss_pred cccccchHHHHHHHHHHHH----hcChhhHhhhcCCCCC-eEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhhhh
Q 005738 192 KDVAGCDEAKQEIMEFVHF----LKNPKKYEELGAKIPK-GALLVGPPGTGKTLLAKATAGESG---VPFLSMSGSDFME 263 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~----l~~~~~~~~~g~~~p~-gvLL~GppGtGKT~LAralA~e~~---~~~i~is~s~~~~ 263 (680)
+.|+|+++|...+.+.+.. |++|.+ |- ..||.||+|+|||-||+++|..+. ..++.++.|+|.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r--------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR--------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC--------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4699999999999888776 444432 44 467799999999999999999995 7899999999986
Q ss_pred h------------hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---C
Q 005738 264 M------------FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---T 328 (680)
Q Consensus 264 ~------------~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---~ 328 (680)
. |+|..+.- .+-+..+++..|||++|||+.- ++ .++|-||+-||.-. .
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEKA------------Hp---dV~nilLQVlDdGrLTD~ 625 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEKA------------HP---DVFNLLLQVLDDGRLTDG 625 (786)
T ss_pred HHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhhc------------CH---HHHHHHHHHhcCCeeecC
Confidence 5 55554421 2333445555699999999764 22 46677777676421 1
Q ss_pred ------CCCeEEEeccCCCC----------------------------CCchhhcCCCccccccccCCCCHHHHHHHHHH
Q 005738 329 ------TAGVVVLAGTNRPD----------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQI 374 (680)
Q Consensus 329 ------~~~ViVIaaTN~~~----------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~ 374 (680)
=.+.++|+|||--. ...|+++. |+|..|.|.+.+.+...+|+..
T Consensus 626 ~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 626 QGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred CCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHH
Confidence 13478999998311 12456666 8998999999999999998888
Q ss_pred Hhhcc
Q 005738 375 YLKKL 379 (680)
Q Consensus 375 ~l~~~ 379 (680)
.+..+
T Consensus 704 ~L~~l 708 (786)
T COG0542 704 QLNRL 708 (786)
T ss_pred HHHHH
Confidence 77643
No 172
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.14 E-value=4.7e-10 Score=127.82 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=117.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCC-eEEe---echhhhhhhccC---chhHHH-HHHHHHHhcCCeEEEEcCcchh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVP-FLSM---SGSDFMEMFVGV---GPSRVR-SLFQEARQCAPSIVFIDEIDAI 296 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~-~i~i---s~s~~~~~~~g~---~~~~vr-~lf~~A~~~~P~ILfIDEiD~L 296 (680)
..++||+|+||||||++|+++++.+... |... ++..+....... ++..++ ..+.. ...++++|||+|.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFDKM 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechhhC
Confidence 3479999999999999999999976432 3221 222221110000 000000 01111 23479999999988
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCCeEEEeccCCCC-------------CCchhhcCCC
Q 005738 297 GRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TTAGVVVLAGTNRPD-------------ILDKALLRPG 352 (680)
Q Consensus 297 ~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~~~ViVIaaTN~~~-------------~LD~aLlRpg 352 (680)
. .. ....|+..|+.-. -+.++.||||+|..+ .|++++++
T Consensus 313 ~------------~~---~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs-- 375 (509)
T smart00350 313 D------------DS---DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS-- 375 (509)
T ss_pred C------------HH---HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--
Confidence 2 22 2333444443211 135688999999652 58999999
Q ss_pred ccccccc-cCCCCHHHHHHHHHHHhhccc-----------------------------CCCCcch-hHHHH-----Hhh-
Q 005738 353 RFDRQIT-IDKPDIKGRDQIFQIYLKKLK-----------------------------LDNEPSF-YSQRL-----AAL- 395 (680)
Q Consensus 353 Rfd~~I~-v~~Pd~~eR~~Il~~~l~~~~-----------------------------l~~~~d~-~l~~l-----a~~- 395 (680)
|||..+. .+.|+.+...+|.++.+.... ..+.... ..+.+ ..+
T Consensus 376 RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~ 455 (509)
T smart00350 376 RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRK 455 (509)
T ss_pred ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Confidence 9998654 578999988888887543211 0000000 00111 011
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 396 ---------TPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 396 ---------t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
..+.|.+.+..+++-|...|..+.+..|+.+|+..|++-+
T Consensus 456 ~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 456 EDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred cccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 1256888999999999889999999999999999998643
No 173
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.14 E-value=4.7e-10 Score=129.89 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=66.1
Q ss_pred CeEEEeccCCC--CCCchhhcCCCccc---cccccC--CC-CHHHHHHHHHHHhh---cc-cCCCCcchhHHHHHh---h
Q 005738 331 GVVVLAGTNRP--DILDKALLRPGRFD---RQITID--KP-DIKGRDQIFQIYLK---KL-KLDNEPSFYSQRLAA---L 395 (680)
Q Consensus 331 ~ViVIaaTN~~--~~LD~aLlRpgRfd---~~I~v~--~P-d~~eR~~Il~~~l~---~~-~l~~~~d~~l~~la~---~ 395 (680)
++.||+++|.. ..+||.|+. ||+ ..+.++ .| +.+.|.++.+...+ +. .+..-.+..+..+.+ +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 67899999864 578999999 998 555553 34 44555555444333 22 121111111223321 1
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 396 TP------GFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 396 t~------G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
.. ..+.++|.++|++|...|..+++..|+.+|+.+|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 23568999999999877877788899999999998755
No 174
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=6.5e-10 Score=110.12 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=97.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------------------eEEeechhhhhhhccCchhHHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGVP------------------------FLSMSGSDFMEMFVGVGPSRVRSLFQ 278 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~~------------------------~i~is~s~~~~~~~g~~~~~vr~lf~ 278 (680)
+.|+.+||+||+|+|||++|+++++.+... +..+.... ...+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 467889999999999999999999987432 11111100 0112346666666
Q ss_pred HHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCcc
Q 005738 279 EARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRF 354 (680)
Q Consensus 279 ~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRf 354 (680)
.+.. ....|++|||+|.+.. ...+.||..|+.. +...++|.+||.+..+.+++.+ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc
Confidence 6543 2346999999999832 2456677777763 3455566667777899999998 77
Q ss_pred ccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 355 DRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 355 d~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
..+.+++|+.++..++++.+ +.+ +..+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----gi~---~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----GIS---EEAAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----CCC---HHHHHHHHHHcCC
Confidence 58999999999998888776 222 1224556666655
No 175
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.14 E-value=2.4e-10 Score=124.92 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=127.8
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
....+..|+|.+.+...+.+.++..... +..|||.|.+||||..+||+|.... +.||+.+||+.+-+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3667889999999999999999875443 4589999999999999999999876 67999999987653
Q ss_pred h-----hccCchhHHHHHHHHHHhcC--------CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh--hcCCCC
Q 005738 264 M-----FVGVGPSRVRSLFQEARQCA--------PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE--MDGFGT 328 (680)
Q Consensus 264 ~-----~~g~~~~~vr~lf~~A~~~~--------P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~--md~~~~ 328 (680)
. .+|. .+.+|.-|.... .+-||+|||..| .-..+.-+...|++ ++....
T Consensus 288 sLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel------------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 288 SLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL------------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC------------CHHHHHHHHHHHhhcceeecCC
Confidence 3 2232 122333332222 269999999666 33445555555554 332222
Q ss_pred ----CCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhh----cccCC-CCcc-h
Q 005738 329 ----TAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLK----KLKLD-NEPS-F 387 (680)
Q Consensus 329 ----~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~----~~~l~-~~~d-~ 387 (680)
+-.|-||||||+ +|-.++ +.|+|- .++.+..|+..+|.+ +.+++++ ..+.. ...+ .
T Consensus 352 ~r~ikVDVRiIAATNR--DL~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNR--DLEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccch--hHHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 224899999997 333333 346663 255667888888865 2233333 22321 1111 1
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 388 YSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 388 ~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.++.|....---+-++|++++++|+..|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 1233433332224489999999999877
No 176
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.14 E-value=2.5e-10 Score=131.04 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=126.6
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
...+|++++|.+.+.+++.+.+..+.. ....|||+|++||||+++|++|+... +.||+.++|+.+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 346799999999999999888876532 34689999999999999999999875 67999999987632
Q ss_pred h-----hccCchh-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC---
Q 005738 264 M-----FVGVGPS-------RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT--- 328 (680)
Q Consensus 264 ~-----~~g~~~~-------~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~--- 328 (680)
. .+|.... .....|..+ ..++|||||||.|. ...+..+..++..-. +..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~-~~~~~~ 324 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS------------PAFQAKLLRVLQEGE-FERVGG 324 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC------------HHHHHHHHHHHhcCc-EEECCC
Confidence 2 1221100 001122222 34799999999983 233444444443211 111
Q ss_pred ----CCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHH----HHHHHHhhccc----CCCCcc-hh
Q 005738 329 ----TAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRD----QIFQIYLKKLK----LDNEPS-FY 388 (680)
Q Consensus 329 ----~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~----~Il~~~l~~~~----l~~~~d-~~ 388 (680)
..++.+|++|+.. +.. +...|+|. ..+.+..|+..+|. .++++++.... .....+ ..
T Consensus 325 ~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1247888888753 111 22234442 14456677766654 34455554322 111111 12
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 389 SQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 389 l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
+..|....---+-++|++++++|+..+ ....|+.+|+..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 344554442234578888888876543 456788888653
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.13 E-value=2.5e-10 Score=104.39 Aligned_cols=126 Identities=36% Similarity=0.490 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCC---eEEeechhhhhh--------------hccCchhHHHHHHHHHHhcCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVP---FLSMSGSDFMEM--------------FVGVGPSRVRSLFQEARQCAPSI 287 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~---~i~is~s~~~~~--------------~~g~~~~~vr~lf~~A~~~~P~I 287 (680)
+..++|+||||||||++++.+|..+..+ ++.++++..... .........+.++..+....|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4678999999999999999999999765 888887654321 12334556778888888888899
Q ss_pred EEEcCcchhhhhcCCCCCCCCChHHHHHHHHH--HHhhcCCCCCCCeEEEeccCC-CCCCchhhcCCCccccccccCCC
Q 005738 288 VFIDEIDAIGRARGRGGFSGGNDERESTLNQL--LVEMDGFGTTAGVVVLAGTNR-PDILDKALLRPGRFDRQITIDKP 363 (680)
Q Consensus 288 LfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L--L~~md~~~~~~~ViVIaaTN~-~~~LD~aLlRpgRfd~~I~v~~P 363 (680)
|+|||++.+..... ....... ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ-----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH-----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998843321 0111000 000011113456788888886 3333444444 88888877654
No 178
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.13 E-value=6.2e-10 Score=120.03 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=116.8
Q ss_pred cccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-----h
Q 005738 194 VAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-----F 265 (680)
Q Consensus 194 v~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-----~ 265 (680)
++|.+.+.+.+.+.+..+. ....+|||+|++||||+++|+++.... +.||+.++|+.+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4688888888887777643 234689999999999999999998755 579999999865322 2
Q ss_pred ccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CC----CCCCCe
Q 005738 266 VGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GF----GTTAGV 332 (680)
Q Consensus 266 ~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~----~~~~~V 332 (680)
+|... .....+|..| ..++|||||||.|. ...+..+..+|..-. .. ....++
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATAS------------LLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCC------------HHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 22110 0111234443 34799999999982 334444555543311 00 112457
Q ss_pred EEEeccCCC-------CCCchhhcCCCccccccccCCCCHHHHHH----HHHHHhhc----ccCCC--Ccc-hhHHHHHh
Q 005738 333 VVLAGTNRP-------DILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQIYLKK----LKLDN--EPS-FYSQRLAA 394 (680)
Q Consensus 333 iVIaaTN~~-------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~----~~l~~--~~d-~~l~~la~ 394 (680)
.+|++||.. ..+.+.|.. ||. .+.+..|+..+|.+ ++++++.. .+... ..+ ..+..|..
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 889998853 123444544 552 45677788877765 33343332 22211 111 11234444
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHH
Q 005738 395 LTPGFAGADIANVCNEAALIAARNESAQITMQH 427 (680)
Q Consensus 395 ~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d 427 (680)
..---+-++|.+++.+++..+ ....++.++
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 432224467778777766543 233455444
No 179
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=4.1e-09 Score=105.83 Aligned_cols=193 Identities=24% Similarity=0.327 Sum_probs=132.8
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM 262 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~ 262 (680)
...+.+.+++|.+.+|+.|.+-...+.. ..+..+|||+|..|||||+|+||+..+. +..++.|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3568899999999999999775554322 2345789999999999999999998876 6779999888864
Q ss_pred hhhccCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--CCCCCeEEEeccC
Q 005738 263 EMFVGVGPSRVRSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF--GTTAGVVVLAGTN 339 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~--~~~~~ViVIaaTN 339 (680)
. +-.+++..+.. ..-|||+|++- +..++ . ....|-..|||- ....+|+|.+|+|
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~gd-~---~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS----------FEEGD-D---AYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC----------CCCCc-h---HHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 2 34556665543 24599999971 11222 2 223344445553 2457899999999
Q ss_pred CCCCCch--------------------hhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcch-h--HHHHHhhC
Q 005738 340 RPDILDK--------------------ALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSF-Y--SQRLAALT 396 (680)
Q Consensus 340 ~~~~LD~--------------------aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~-~--l~~la~~t 396 (680)
+-..|+. .+--+.||...+.|.+++.++...|+..++++.+++.+.+. . .-..|..-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 8654431 12223499999999999999999999999999888765321 1 12234445
Q ss_pred CCCCHHHHHHHHH
Q 005738 397 PGFAGADIANVCN 409 (680)
Q Consensus 397 ~G~sgadL~~lv~ 409 (680)
.|-||+-..+.++
T Consensus 263 g~RSGR~A~QF~~ 275 (287)
T COG2607 263 GGRSGRVAWQFIR 275 (287)
T ss_pred CCCccHhHHHHHH
Confidence 5666665555544
No 180
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=9e-10 Score=117.64 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=102.1
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG--------------------- 250 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~--------------------- 250 (680)
++++|.+.+...+...+.. ..+.|+.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3677888888777766553 124567899999999999999999999885
Q ss_pred ---CCeEEeechhhhhhhccCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 005738 251 ---VPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM 323 (680)
Q Consensus 251 ---~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m 323 (680)
-.++.++.++-... ......++.+-...... ...|++|||+|.+.. ...|.++..+
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHh
Confidence 24666666553221 01234455554444332 246999999999932 4567777777
Q ss_pred cCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHH
Q 005738 324 DGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 370 (680)
Q Consensus 324 d~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~ 370 (680)
+. +..+..+|.+||.+..+-+.+++ |+ ..+.|++|+...+..
T Consensus 134 Ee--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 134 EE--PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred cc--CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHH
Confidence 76 55667888889999998888888 77 567787765444433
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.11 E-value=1.2e-10 Score=109.47 Aligned_cols=113 Identities=33% Similarity=0.373 Sum_probs=70.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh--hccCch------hHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM--FVGVGP------SRVRSLFQEARQCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~--~~g~~~------~~vr~lf~~A~~~~P~ILfIDEiD~L~~ 298 (680)
+|+|+||||||||++|+.+|+.++.+++.++++..... +.|.-. ......+.++.. .++|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999988764321 111100 000000111111 5689999999876
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcCC--------CCCC------CeEEEeccCCCC----CCchhhcCCCcc
Q 005738 299 ARGRGGFSGGNDERESTLNQLLVEMDGF--------GTTA------GVVVLAGTNRPD----ILDKALLRPGRF 354 (680)
Q Consensus 299 ~r~~~~~~~~~~~~~~~l~~LL~~md~~--------~~~~------~ViVIaaTN~~~----~LD~aLlRpgRf 354 (680)
+.+....++.++..-.-. .... ++.+|+|+|..+ .++++|++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 233444555555431100 0111 489999999888 89999999 87
No 182
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.11 E-value=5e-10 Score=127.74 Aligned_cols=199 Identities=24% Similarity=0.288 Sum_probs=120.7
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-- 264 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-- 264 (680)
.+.+++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|++++... +.||+.++|+.+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578999999999999988876432 35689999999999999999999875 579999999876432
Q ss_pred ---hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----C
Q 005738 265 ---FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----T 328 (680)
Q Consensus 265 ---~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~ 328 (680)
.+|... ......|..| ..+.|||||||.|. ...+..+..++..-. ... .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCcce
Confidence 223211 0011234443 34799999999983 333444444443211 010 1
Q ss_pred CCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhhcc----cCC-CCcc-hhHHH
Q 005738 329 TAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLKKL----KLD-NEPS-FYSQR 391 (680)
Q Consensus 329 ~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~~----~l~-~~~d-~~l~~ 391 (680)
..++-+|++||..- . .+...|+|. ..+.+..|+..+|.+ ++++++++. +.. ...+ ..+..
T Consensus 320 ~~~~RiI~~t~~~l--~-~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDL--R-EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCH--H-HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 23578899988642 1 222233332 245677888888765 333444322 111 1111 11344
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 392 LAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 392 la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
|....---+-++|++++++|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 4444333355889999998877653
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.1e-09 Score=117.14 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=121.4
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe----------EEeech
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF----------LSMSGS 259 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~----------i~is~s 259 (680)
.|++|+|++.+++.|...+.. .+.|+..||+||+|+||+++|+++|+.+-+.- ...+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999988764 35678999999999999999999998763211 011111
Q ss_pred hhhhhh-----cc--------------------CchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCCh
Q 005738 260 DFMEMF-----VG--------------------VGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGND 310 (680)
Q Consensus 260 ~~~~~~-----~g--------------------~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~ 310 (680)
|+.-.+ -| ..-..+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 111000 01 011345666555432 234699999999882
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHH
Q 005738 311 ERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQ 390 (680)
Q Consensus 311 ~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~ 390 (680)
....|.||+.|+..+ +.++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++|+....... .+....
T Consensus 138 --~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 138 --EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred --HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 235678888887743 33566677788999999998 87 6899999999999888887643211 111125
Q ss_pred HHHhhCCCCCHHHHHHHHH
Q 005738 391 RLAALTPGFAGADIANVCN 409 (680)
Q Consensus 391 ~la~~t~G~sgadL~~lv~ 409 (680)
.++....|-. +...++++
T Consensus 206 ~l~~~a~Gs~-~~al~~l~ 223 (314)
T PRK07399 206 ELLALAQGSP-GAAIANIE 223 (314)
T ss_pred HHHHHcCCCH-HHHHHHHH
Confidence 6677776644 33433333
No 184
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=6e-10 Score=127.27 Aligned_cols=211 Identities=20% Similarity=0.302 Sum_probs=123.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
...+|++++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999988888777665322 24579999999999999999997654 57999999987643
Q ss_pred h-----hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh--cCCC--
Q 005738 264 M-----FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM--DGFG-- 327 (680)
Q Consensus 264 ~-----~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m--d~~~-- 327 (680)
. .+|... .....+|+.|. .+.|||||||.|. ...+..+..++..- ....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS------------PRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC------------HHHHHHHHHHHhcCCcccCCCC
Confidence 2 233211 01123455443 4799999999983 33444555555431 0111
Q ss_pred --CCCCeEEEeccCCCC-------CCchhhcCCCccccccccCCCCHHHHHH----HHHHHhh----cccCCC-Ccch-h
Q 005738 328 --TTAGVVVLAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQIYLK----KLKLDN-EPSF-Y 388 (680)
Q Consensus 328 --~~~~ViVIaaTN~~~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~----~~~l~~-~~d~-~ 388 (680)
...++.||++|+.+- .+.+.|.. |+. .+.+..|+..+|.+ +++++++ +.+... .... .
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a 410 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL 410 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 123577888887542 12333443 442 46677888877764 2233333 222211 1111 1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 005738 389 SQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHF 428 (680)
Q Consensus 389 l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~ 428 (680)
+..|....---+-++|++++.+|+..+ ....|+.+|+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 233333322223467777777665443 4556777764
No 185
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.10 E-value=6.1e-10 Score=130.49 Aligned_cols=214 Identities=21% Similarity=0.278 Sum_probs=128.5
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh--
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM-- 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~-- 262 (680)
..+|++++|.+.+.+++.+.+..+.. .+..|||+|++||||+++|++++... +.||+.++|+.+-
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999998888887766432 24579999999999999999999865 5799999998653
Q ss_pred ---hhhccCc--h--hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCCC----C
Q 005738 263 ---EMFVGVG--P--SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFGT----T 329 (680)
Q Consensus 263 ---~~~~g~~--~--~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~~----~ 329 (680)
+.++|.. . ......|+.| ..+.||||||+.|. ...+..+..+|..-. .... +
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~------------~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS------------PELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 2233321 0 0001123332 34799999999982 334445555553211 0011 1
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhhcc----cCCCCc-chhHHHHH
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLKKL----KLDNEP-SFYSQRLA 393 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~~----~l~~~~-d~~l~~la 393 (680)
-++.+|++||..- ..+...|+|. ..+.+..|+..+|.+ +++.++... +..... +..+..|.
T Consensus 456 ~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 2577899888532 1223334442 246677888888854 344444432 111111 11234455
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 394 ALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 394 ~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
...---+-++|.++++.|+..+ ....|+.+|+...+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 4442234578888888776543 44578888876554
No 186
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.08 E-value=1.1e-09 Score=120.75 Aligned_cols=141 Identities=27% Similarity=0.420 Sum_probs=88.2
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------eEEee----ch
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------FLSMS----GS 259 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------~i~is----~s 259 (680)
++++.+-++..+.+...+. ..++++|+||||||||++|+.+|..+... ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6777776666655543332 14689999999999999999999887431 22222 23
Q ss_pred hhhhhh--ccCchh----HHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhh--------
Q 005738 260 DFMEMF--VGVGPS----RVRSLFQEARQC--APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEM-------- 323 (680)
Q Consensus 260 ~~~~~~--~g~~~~----~vr~lf~~A~~~--~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~m-------- 323 (680)
+++..+ .+.+-. .+.++...|+.+ .|++||||||+.-...+ .+..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k--------------iFGel~~lLE~~~rg~~ 305 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK--------------VFGEVMMLMEHDKRGEN 305 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH--------------hhhhhhhhccccccccc
Confidence 444333 111111 234455666653 57999999998753222 111111111
Q ss_pred ------------cCCCCCCCeEEEeccCCCC----CCchhhcCCCccccccccCC
Q 005738 324 ------------DGFGTTAGVVVLAGTNRPD----ILDKALLRPGRFDRQITIDK 362 (680)
Q Consensus 324 ------------d~~~~~~~ViVIaaTN~~~----~LD~aLlRpgRfd~~I~v~~ 362 (680)
+.+....++.||||+|..+ .+|.||+| || ..|.+.+
T Consensus 306 ~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 306 WSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred cceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 2355668899999999887 79999999 99 4455553
No 187
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.08 E-value=1e-10 Score=116.49 Aligned_cols=45 Identities=42% Similarity=0.673 Sum_probs=35.9
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
|+||+|++.+|..|.-... | .+++||+||||||||++|+++..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999998865433 2 4699999999999999999999844
No 188
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.2e-10 Score=116.66 Aligned_cols=130 Identities=30% Similarity=0.466 Sum_probs=87.6
Q ss_pred cccchHHHHHHHHHHHHhcChhhHhhh----cCCCC-CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh-hcc
Q 005738 194 VAGCDEAKQEIMEFVHFLKNPKKYEEL----GAKIP-KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM-FVG 267 (680)
Q Consensus 194 v~G~~~~k~~L~e~v~~l~~~~~~~~~----g~~~p-~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~-~~g 267 (680)
|+|++.+|+.|.-.| ..+.++.... +.... .++||.||.|||||+||+.+|+.+++||...++..+.+. |+|
T Consensus 63 VIGQe~AKKvLsVAV--YNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAV--YNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeee--hhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 899999998775322 1122221111 12222 469999999999999999999999999999999988765 888
Q ss_pred CchhH-HHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC
Q 005738 268 VGPSR-VRSLFQEA----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF 326 (680)
Q Consensus 268 ~~~~~-vr~lf~~A----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~ 326 (680)
+.-.+ +..+++.| .+...+||||||||.+.++..+.+... +-.-+.+...||..++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITR-DVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITR-DVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCccc-ccCchHHHHHHHHHHcCc
Confidence 76444 33444433 223458999999999988765432221 222345667778877763
No 189
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=2.3e-09 Score=126.76 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=123.8
Q ss_pred EEEEc--CCCChHHHHHHHHHHhc-----CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcC------CeEEEEcCcc
Q 005738 228 ALLVG--PPGTGKTLLAKATAGES-----GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCA------PSIVFIDEID 294 (680)
Q Consensus 228 vLL~G--ppGtGKT~LAralA~e~-----~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~------P~ILfIDEiD 294 (680)
-+..| |++.||||+|+++|+++ +.+++.+|+++.. +-..+|++...+.... ..|++|||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 35668 99999999999999997 5689999999842 2346777776654433 2599999999
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHH
Q 005738 295 AIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQI 374 (680)
Q Consensus 295 ~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~ 374 (680)
.|.. ...+.|+..|+. +...+.+|.+||.+..+.+++++ |+ ..+.|++|+.++....++.
T Consensus 641 ~Lt~---------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 641 ALTQ---------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cCCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 9821 245667777775 34678888999999999999998 87 7899999999999999998
Q ss_pred HhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 375 YLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 375 ~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.+.+.++..+.+ .+..++..+.| +.+..-++++.++ . ....|+.+++....
T Consensus 701 I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~---~--~~~~It~~~V~~~~ 751 (846)
T PRK04132 701 IAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAA---A--LDDKITDENVFLVA 751 (846)
T ss_pred HHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH---H--hcCCCCHHHHHHHh
Confidence 887655544333 35778888877 2333334444332 2 12357777665543
No 190
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.06 E-value=2.1e-09 Score=127.03 Aligned_cols=200 Identities=21% Similarity=0.281 Sum_probs=119.8
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM 264 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~ 264 (680)
..+|++++|.+.+.+.+.+.+..+.. ...+|||+|++|||||++|++++... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 45789999999999999888776432 24689999999999999999998865 679999999865321
Q ss_pred -----hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CC----
Q 005738 265 -----FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GF---- 326 (680)
Q Consensus 265 -----~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~---- 326 (680)
.+|... ......|+.+ ..++||||||+.+. ...+..+..++..-. ..
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCCCC
Confidence 223210 1112334433 34899999999982 333444444443311 00
Q ss_pred CCCCCeEEEeccCCCCCCchhhcCCCcccc-------ccccCCCCHHHHHH----HHHHHhhcc----cCCC-Cc-chhH
Q 005738 327 GTTAGVVVLAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQIYLKKL----KLDN-EP-SFYS 389 (680)
Q Consensus 327 ~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~----Il~~~l~~~----~l~~-~~-d~~l 389 (680)
....++.+|++|+..- . .+...|+|.. .+.+..|+..+|.+ ++++++.+. +... .. ...+
T Consensus 507 ~~~~~~RiI~~t~~~l--~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 507 IIQTDVRLIAATNRDL--K-KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred cccceEEEEEeCCCCH--H-HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 0124578889987542 1 1222233332 45678888888866 334444332 1111 11 1123
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 390 QRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 390 ~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
..|....---+-++|++++++|+..+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 44444332224478888888776543
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.04 E-value=6e-10 Score=108.72 Aligned_cols=134 Identities=29% Similarity=0.451 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-----h
Q 005738 194 VAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-----F 265 (680)
Q Consensus 194 v~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-----~ 265 (680)
|+|.+.+.+++.+.+..+. ..|.+|||+|++||||+++|++|.... +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5788888888888777643 335789999999999999999999865 579999999876422 3
Q ss_pred ccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----CCCCe
Q 005738 266 VGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----TTAGV 332 (680)
Q Consensus 266 ~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~~~~V 332 (680)
+|... .....+|++|.. ++||||||+.|. ...+..|.++|+.-. ... ...++
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLP------------PELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhH------------HHHHHHHHHHHhhchhccccccccccccc
Confidence 33311 112357777755 899999999993 345556666665321 111 12368
Q ss_pred EEEeccCCCCCCchhhcCCCccc
Q 005738 333 VVLAGTNRPDILDKALLRPGRFD 355 (680)
Q Consensus 333 iVIaaTN~~~~LD~aLlRpgRfd 355 (680)
.||++|+.+ |.. +...|+|.
T Consensus 136 RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 136 RIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp EEEEEESS---HHH-HHHTTSS-
T ss_pred eEEeecCcC--HHH-HHHcCCCh
Confidence 999999852 333 33446664
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.5e-09 Score=115.37 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=107.2
Q ss_pred ccccccc-chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe--EEe---ech----
Q 005738 190 FFKDVAG-CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSM---SGS---- 259 (680)
Q Consensus 190 ~f~dv~G-~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~--i~i---s~s---- 259 (680)
.|++|.| ++.+++.|...+.. .++|+.+||+||+|+||+++|+++|+.+.++- -.. .|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888888 88899888877652 45688899999999999999999999764321 000 000
Q ss_pred -------hhhhhh-cc--CchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 260 -------DFMEMF-VG--VGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 260 -------~~~~~~-~g--~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
|+.-.. .| .+-..+|++.+.+.. ....|++|||+|.+. ....|.||+.++.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~---------------~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT---------------ASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------HHHHHHHHHHhcC
Confidence 110000 01 122456666655442 224699999999882 2356788888887
Q ss_pred CCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHH
Q 005738 326 FGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQI 374 (680)
Q Consensus 326 ~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~ 374 (680)
++.++++|.+|+.++.|-|++++ |+ ..+.+.+|+.++..++++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45667777788888899999998 77 6789999998887776653
No 193
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.5e-09 Score=114.98 Aligned_cols=154 Identities=23% Similarity=0.392 Sum_probs=110.2
Q ss_pred HHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCch----hHHHHHHHHH
Q 005738 205 MEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGP----SRVRSLFQEA 280 (680)
Q Consensus 205 ~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~----~~vr~lf~~A 280 (680)
.-++...+++++ ..-..+||.||||+|||.||-.+|...+.||+.+-..+- .+|.++ ..++..|+.|
T Consensus 524 ~llv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 524 KLLVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---MIGLSESAKCAHIKKIFEDA 594 (744)
T ss_pred HHHHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHHHHHHHHHHHHHHh
Confidence 344555555554 234689999999999999999999999999997754432 233333 4688999999
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCC-CeEEEeccCCCCCCch-hhcCCCcccccc
Q 005738 281 RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTA-GVVVLAGTNRPDILDK-ALLRPGRFDRQI 358 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~-~ViVIaaTN~~~~LD~-aLlRpgRfd~~I 358 (680)
.+..-+||++|+|+.|..-- .-+......++..|+..+...++.+ +.+|++||.+.+.|.. .++. .|+..+
T Consensus 595 YkS~lsiivvDdiErLiD~v-----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i 667 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYV-----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTI 667 (744)
T ss_pred hcCcceEEEEcchhhhhccc-----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhhee
Confidence 99888999999999986542 2345566778888888887765554 4677788776665533 4555 788888
Q ss_pred ccCCCCH-HHHHHHHHH
Q 005738 359 TIDKPDI-KGRDQIFQI 374 (680)
Q Consensus 359 ~v~~Pd~-~eR~~Il~~ 374 (680)
.+|.-+. ++..+++..
T Consensus 668 ~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 668 HVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ecCccCchHHHHHHHHH
Confidence 8886654 445555443
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.99 E-value=5.9e-09 Score=104.03 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=116.5
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----CeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV-----PFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~-----~~i~is~s~~~ 262 (680)
...++||+|.++..++|.-+...=.. .+++|.|||||||||-+.++|+++=. -++.++.|+-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnm------------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNM------------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCC------------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 45799999999999999887664222 36899999999999999999998722 35677777632
Q ss_pred hhhccCchhHHH---HHHHHHHhcCC----eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 263 EMFVGVGPSRVR---SLFQEARQCAP----SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 263 ~~~~g~~~~~vr---~lf~~A~~~~P----~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
+-.-+| ..|++-+-.-| .||++||.|++.. + .+|.+. ..|+-+.... .+.
T Consensus 91 ------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--------g----AQQAlR---RtMEiyS~tt--RFa 147 (333)
T KOG0991|consen 91 ------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--------G----AQQALR---RTMEIYSNTT--RFA 147 (333)
T ss_pred ------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--------H----HHHHHH---HHHHHHcccc--hhh
Confidence 223333 34555544333 4999999999832 1 222222 2333333333 445
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.++|..+.+=+.+.+ |+ -.+.+...+..+...-+....+..+.....+- ++.+.-...| |+++.+|. +.+
T Consensus 148 laCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dg-Leaiifta~G----DMRQalNn--LQs 217 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDG-LEAIIFTAQG----DMRQALNN--LQS 217 (333)
T ss_pred hhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcch-HHHhhhhccc----hHHHHHHH--HHH
Confidence 567776665555555 54 23344444444433333333333333333332 3555554555 78877775 334
Q ss_pred HHhcCCcccHHHHHHH
Q 005738 416 ARNESAQITMQHFEAA 431 (680)
Q Consensus 416 ~r~~~~~It~~d~~~A 431 (680)
.-.+-..|+.+.+-..
T Consensus 218 t~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 218 TVNGFGLVNQENVFKV 233 (333)
T ss_pred Hhccccccchhhhhhc
Confidence 4445556666554443
No 195
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=6.8e-09 Score=119.87 Aligned_cols=218 Identities=12% Similarity=0.128 Sum_probs=124.0
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE-eechh---h--
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS-MSGSD---F-- 261 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~-is~s~---~-- 261 (680)
..+++||+|+++..++++.++.....+ ....+.++|+||||||||++++++|++++..++. .+... .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 457999999999999888877653221 2223458999999999999999999998765533 11110 0
Q ss_pred --------hhhh--ccCchhHHHHHHHHHHh----------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHH
Q 005738 262 --------MEMF--VGVGPSRVRSLFQEARQ----------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLV 321 (680)
Q Consensus 262 --------~~~~--~g~~~~~vr~lf~~A~~----------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~ 321 (680)
...+ +......++.++..+.. ....|||||||+.+... .. ..+..+|.
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~----~~lq~lLr 220 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DT----RALHEILR 220 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hH----HHHHHHHH
Confidence 0000 01122344555555542 24569999999987431 11 13444444
Q ss_pred -hhcCCCCCCCeEEEeccC-CCC--------------CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCC--C
Q 005738 322 -EMDGFGTTAGVVVLAGTN-RPD--------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLD--N 383 (680)
Q Consensus 322 -~md~~~~~~~ViVIaaTN-~~~--------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~--~ 383 (680)
... ....+.+|++++ .+. .|.++++..-|. .+|.|.+.......+.|+..+...... .
T Consensus 221 ~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 221 WKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 211 122333333332 121 134677742245 478999999999888887777653211 1
Q ss_pred C----cchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh-------cCCcccHHHHHHHH
Q 005738 384 E----PSFYSQRLAALTPGFAGADIANVCNEAALIAARN-------ESAQITMQHFEAAI 432 (680)
Q Consensus 384 ~----~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~-------~~~~It~~d~~~Al 432 (680)
. ....+..|+....| |++..++.-...+.+. +...++..++..+.
T Consensus 297 ~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred ccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 1 11234566665554 8888888654443322 22345555555443
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=3.7e-09 Score=113.82 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe--EEeech--------------hhhhhhc-----cCchhHHHHHHHHH
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSMSGS--------------DFMEMFV-----GVGPSRVRSLFQEA 280 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~--i~is~s--------------~~~~~~~-----g~~~~~vr~lf~~A 280 (680)
.+.|+++||+||+|+|||++|+++|+.+.+.- -.-.|. |+..-.. ..+-..+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999999774421 000110 1100000 12335677776666
Q ss_pred Hhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCcccc
Q 005738 281 RQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDR 356 (680)
Q Consensus 281 ~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~ 356 (680)
... ...|++||++|.+. ....|.||+.++. +..++++|.+|+.++.|.|.+++ |+ .
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~---------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~ 158 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN---------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-Q 158 (328)
T ss_pred hhccccCCCeEEEECChhhCC---------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-e
Confidence 432 34699999999982 2467888888887 55678888999999999999999 88 5
Q ss_pred ccccCCCCHHHHHHHHHHHh
Q 005738 357 QITIDKPDIKGRDQIFQIYL 376 (680)
Q Consensus 357 ~I~v~~Pd~~eR~~Il~~~l 376 (680)
.+.|++|+.++..+.+....
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhc
Confidence 69999999988887776543
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.98 E-value=5.9e-09 Score=112.18 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=63.3
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcChhhHhhhcCC-CCCeEEEEcCCCChHHHHHHHHHHhcCC-------CeEEeec--
Q 005738 190 FFK-DVAGCDEAKQEIMEFVHFLKNPKKYEELGAK-IPKGALLVGPPGTGKTLLAKATAGESGV-------PFLSMSG-- 258 (680)
Q Consensus 190 ~f~-dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~-~p~gvLL~GppGtGKT~LAralA~e~~~-------~~i~is~-- 258 (680)
-|+ |+.|++++++++.+.+.... .|.. ..+.++|+||||||||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 466 89999999887776655422 1222 3477899999999999999999999976 9999988
Q ss_pred --hhhhhhhccCchhHHHHHHHH
Q 005738 259 --SDFMEMFVGVGPSRVRSLFQE 279 (680)
Q Consensus 259 --s~~~~~~~g~~~~~vr~lf~~ 279 (680)
+.+.+..++.....+|..|.+
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHH
Confidence 777777666666666666654
No 198
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.9e-09 Score=110.32 Aligned_cols=84 Identities=31% Similarity=0.468 Sum_probs=63.0
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--------CCCCCeEEEecc----CCCCCCchhhcCCC
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF--------GTTAGVVVLAGT----NRPDILDKALLRPG 352 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~--------~~~~~ViVIaaT----N~~~~LD~aLlRpg 352 (680)
-+||||||||.++.+.+. ++.+-.++.+.-.||-..+|- -..+++++||+. ..|+.|=|.|. |
T Consensus 251 ~GIvFIDEIDKIa~~~~~---g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--G 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGS---GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--G 325 (444)
T ss_pred cCeEEEehhhHHHhcCCC---CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--C
Confidence 469999999999876542 222455666777777777663 245679999885 36888888885 5
Q ss_pred ccccccccCCCCHHHHHHHHH
Q 005738 353 RFDRQITIDKPDIKGRDQIFQ 373 (680)
Q Consensus 353 Rfd~~I~v~~Pd~~eR~~Il~ 373 (680)
||.-.+++...+.++-..||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999888777764
No 199
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=1e-08 Score=115.68 Aligned_cols=211 Identities=26% Similarity=0.299 Sum_probs=124.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC----------CeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV----------PFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~----------~~i~is~ 258 (680)
..|.++.|+..+++.+.- .+...+.++|+||||||||++++.+++.+.- .++++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 367788887766655321 1122357999999999999999999975411 1111111
Q ss_pred h-----h-----hh--------hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHH
Q 005738 259 S-----D-----FM--------EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLL 320 (680)
Q Consensus 259 s-----~-----~~--------~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL 320 (680)
. . |. ...+|.+...-...+..|.. .+|||||++.+. . .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~------------~---~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE------------R---RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC------------H---HHHHHHH
Confidence 0 0 11 11233322111234444433 799999998762 2 3444444
Q ss_pred HhhcCCC-----------CCCCeEEEeccCCCC---------------------CCchhhcCCCccccccccCCCCHHH-
Q 005738 321 VEMDGFG-----------TTAGVVVLAGTNRPD---------------------ILDKALLRPGRFDRQITIDKPDIKG- 367 (680)
Q Consensus 321 ~~md~~~-----------~~~~ViVIaaTN~~~---------------------~LD~aLlRpgRfd~~I~v~~Pd~~e- 367 (680)
+.|+.-. ...++.+|+|+|... .|...++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4443211 235689999999753 36778888 999999999885321
Q ss_pred ---------HHHHHHHHh--------h-c-ccCCCCc---------chhHHH---HHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 368 ---------RDQIFQIYL--------K-K-LKLDNEP---------SFYSQR---LAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 368 ---------R~~Il~~~l--------~-~-~~l~~~~---------d~~l~~---la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
..+|-+... + + .+..... ...... -+....|.|.+....+++-|.-.|.
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiAD 473 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIAD 473 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 111211100 0 0 0100000 000011 1223457899999999999999999
Q ss_pred HhcCCcccHHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAID 433 (680)
Q Consensus 417 r~~~~~It~~d~~~Al~ 433 (680)
.++++.|+.+|+.+|+.
T Consensus 474 L~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 474 IDQSDIITRQHLQEAVS 490 (506)
T ss_pred HcCCCCCCHHHHHHHHH
Confidence 99999999999999985
No 200
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=1.1e-08 Score=105.24 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=89.6
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC------------CCCCchhhcCCC
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR------------PDILDKALLRPG 352 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~------------~~~LD~aLlRpg 352 (680)
|+||||||+|.| +-+.-..+|.-|+. .+ .. ++|.+||+ |.-++-.|+.
T Consensus 289 pGVLFIDEvHML------------DIEcFsFlNrAlE~--d~---~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 289 PGVLFIDEVHML------------DIECFSFLNRALEN--DM---AP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred cceEEEeeehhh------------hhHHHHHHHHHhhh--cc---Cc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 677777777766 22333445554432 11 22 44555554 4556667766
Q ss_pred ccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 353 RFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 353 Rfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
|. ..|...+.+.++.++||+..+.......+.+. ++.|......-|-+--.+|+..|.+.|.++....+..+|+..+.
T Consensus 349 R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680|consen 349 RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHH
Confidence 55 46677788999999999999987655554443 35566655566677778999999999999999999999999998
Q ss_pred HHHh
Q 005738 433 DRVI 436 (680)
Q Consensus 433 ~~v~ 436 (680)
.-.+
T Consensus 427 ~LFl 430 (454)
T KOG2680|consen 427 RLFL 430 (454)
T ss_pred HHHh
Confidence 6554
No 201
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.96 E-value=7.2e-09 Score=112.07 Aligned_cols=161 Identities=27% Similarity=0.437 Sum_probs=102.7
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEe---
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSM--- 256 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i~i--- 256 (680)
....|.-++|++..|..|.-. --+|+. .|+||.|+.||||||++|+||.-+ |+||-.=
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~---av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLN---AVDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred hccchhhhcCchHHHHHHhhh---hccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 356789999999998877432 223332 689999999999999999999966 3333110
Q ss_pred ---echh-------------------hhhhhccCchhHH------HHHHHH----------HHhcCCeEEEEcCcchhhh
Q 005738 257 ---SGSD-------------------FMEMFVGVGPSRV------RSLFQE----------ARQCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 257 ---s~s~-------------------~~~~~~g~~~~~v------r~lf~~----------A~~~~P~ILfIDEiD~L~~ 298 (680)
.|.+ ++..-.|.++.++ ..+.+. |+.| -+|+||||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--
Confidence 0111 1111123333322 111110 1112 269999999877
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhc---------CC--CCCCCeEEEeccCCCC-CCchhhcCCCccccccccCCC-CH
Q 005738 299 ARGRGGFSGGNDERESTLNQLLVEMD---------GF--GTTAGVVVLAGTNRPD-ILDKALLRPGRFDRQITIDKP-DI 365 (680)
Q Consensus 299 ~r~~~~~~~~~~~~~~~l~~LL~~md---------~~--~~~~~ViVIaaTN~~~-~LD~aLlRpgRfd~~I~v~~P-d~ 365 (680)
+ .+.++.||..+. |+ ....++++|+|+|..+ .|-|.|+. ||...+.+..| +.
T Consensus 157 ----------~---d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~ 221 (423)
T COG1239 157 ----------D---DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDL 221 (423)
T ss_pred ----------c---HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCH
Confidence 2 234555555433 22 2345699999999653 68888988 99999988866 67
Q ss_pred HHHHHHHHHHhh
Q 005738 366 KGRDQIFQIYLK 377 (680)
Q Consensus 366 ~eR~~Il~~~l~ 377 (680)
++|.+|++..+.
T Consensus 222 ~~rv~Ii~r~~~ 233 (423)
T COG1239 222 EERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHHH
Confidence 889998887654
No 202
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-09 Score=117.57 Aligned_cols=47 Identities=45% Similarity=0.581 Sum_probs=39.3
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e 248 (680)
...|.||.|++.+|+.|..... --+++|++||||||||++|+-+.+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 3479999999999998865433 2478999999999999999998773
No 203
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.90 E-value=3.1e-09 Score=104.05 Aligned_cols=111 Identities=30% Similarity=0.344 Sum_probs=73.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC----CeEEeechhhhhhhccCchhHHHHHHHHH----HhcCCeEEEEcCcchhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV----PFLSMSGSDFMEMFVGVGPSRVRSLFQEA----RQCAPSIVFIDEIDAIG 297 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~----~~i~is~s~~~~~~~g~~~~~vr~lf~~A----~~~~P~ILfIDEiD~L~ 297 (680)
..+||+||+|||||.+|+++|..+.. +++.++++++.... .....+..++..+ ......||||||||...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 45789999999999999999999996 99999999987610 1111222222211 11112499999999997
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------CCCCeEEEeccCCCC
Q 005738 298 RARGRGGFSGGNDERESTLNQLLVEMDGFG---------TTAGVVVLAGTNRPD 342 (680)
Q Consensus 298 ~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------~~~~ViVIaaTN~~~ 342 (680)
+.. ..+.+.....+.+.||..+|+-. ...++++|+|+|.-.
T Consensus 82 ~~~----~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSN----SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTT----TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccc----cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 652 12234445567777777776421 235689999999644
No 204
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.88 E-value=6.2e-08 Score=109.76 Aligned_cols=195 Identities=21% Similarity=0.285 Sum_probs=126.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeechhhhhh----------hccCchh------HHHHHHHHH
Q 005738 227 GALLVGPPGTGKTLLAKATAGES----------GVPFLSMSGSDFMEM----------FVGVGPS------RVRSLFQEA 280 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~s~~~~~----------~~g~~~~------~vr~lf~~A 280 (680)
.++++|-||||||..++.+-.++ ..+++.+|+-.+.+. +.|.... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58899999999999999998855 345788887655432 2333211 122222211
Q ss_pred -HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC--CCccc-c
Q 005738 281 -RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR--PGRFD-R 356 (680)
Q Consensus 281 -~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR--pgRfd-~ 356 (680)
-...|+||+|||+|.|..+. +.+++.++.+--. ++..++||+..|..+....-|.. ..|++ +
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt~--~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPTL--KNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCcC--CCCceEEEEecccccCHHHHhccchhhhccce
Confidence 12357899999999996532 4688888766432 56778888888876543222221 12544 5
Q ss_pred ccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCH--HHHHHHHHHHHHHHHHhcC-------CcccHHH
Q 005738 357 QITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAG--ADIANVCNEAALIAARNES-------AQITMQH 427 (680)
Q Consensus 357 ~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sg--adL~~lv~eAa~~a~r~~~-------~~It~~d 427 (680)
.+.|.+.+..+.++|+...+.....- ..+ ..+-+|+.-...|| +....+|++|+..|..+.. ..|++.|
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f-~~~-aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAF-ENK-AIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILH 647 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhc-chh-HHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHH
Confidence 78899999999999999999876211 111 12333333333333 3455789999988876654 5688999
Q ss_pred HHHHHHHHhc
Q 005738 428 FEAAIDRVIG 437 (680)
Q Consensus 428 ~~~Al~~v~~ 437 (680)
+.+|++.++.
T Consensus 648 v~~Ai~em~~ 657 (767)
T KOG1514|consen 648 VMEAINEMLA 657 (767)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 205
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.88 E-value=9.7e-09 Score=115.14 Aligned_cols=208 Identities=22% Similarity=0.286 Sum_probs=120.8
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-- 264 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-- 264 (680)
.+.+++|.+...+.+.+.+..+. ....+++|+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888888877777665432 223578999999999999999998765 578999999876322
Q ss_pred ---hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----C
Q 005738 265 ---FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----T 328 (680)
Q Consensus 265 ---~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~ 328 (680)
.+|... ......|.. ...++||||||+.|. ...+..+..++..-. ... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~------------~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLP------------LNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCC------------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence 122110 000111222 234799999999983 334444555554311 001 1
Q ss_pred CCCeEEEeccCCCC-------CCchhhcCCCccccccccCCCCHHHHHH----HHHHHhhcc----cCC-CCc-chhHHH
Q 005738 329 TAGVVVLAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQIYLKKL----KLD-NEP-SFYSQR 391 (680)
Q Consensus 329 ~~~ViVIaaTN~~~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~~----~l~-~~~-d~~l~~ 391 (680)
..++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+|.+ +++++++.. +.. ... ...+..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 23578888887541 23333333 44 246677888888875 344444332 111 111 122344
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 005738 392 LAALTPGFAGADIANVCNEAALIAARNESAQITMQHF 428 (680)
Q Consensus 392 la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~ 428 (680)
|....---+-++|++++++|+..+ ....|+.+|+
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 544442334578888888877543 3456776664
No 206
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.88 E-value=1.4e-08 Score=117.50 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=63.6
Q ss_pred CeEEEeccCCC--CCCchhhcCCCccc---cccccC--CC-CHHHHHHHHHHHhhcccCC---CCc-chhHHHHHh---h
Q 005738 331 GVVVLAGTNRP--DILDKALLRPGRFD---RQITID--KP-DIKGRDQIFQIYLKKLKLD---NEP-SFYSQRLAA---L 395 (680)
Q Consensus 331 ~ViVIaaTN~~--~~LD~aLlRpgRfd---~~I~v~--~P-d~~eR~~Il~~~l~~~~l~---~~~-d~~l~~la~---~ 395 (680)
++.||+++|+. ..+||+|.. ||. ..+.++ .+ +.+.+..+++...+..... ... ...+..|.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888874 467899988 874 334443 22 2455666665544433211 111 111222222 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 005738 396 TPG------FAGADIANVCNEAALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 396 t~G------~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
..| ..-++|.+++++|...|...++..|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 346899999999999998889999999999988764
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.86 E-value=1.1e-08 Score=99.20 Aligned_cols=133 Identities=21% Similarity=0.315 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----------------------
Q 005738 196 GCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP----------------------- 252 (680)
Q Consensus 196 G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~----------------------- 252 (680)
|++++++.|.+.+.. .+.|+.+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677788888777653 3568899999999999999999999976321
Q ss_pred eEEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 005738 253 FLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT 328 (680)
Q Consensus 253 ~i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~ 328 (680)
++.++...-. -......+|.+...+.. ....|++|||+|.+. ....|.||..|+. +
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~---------------~~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT---------------EEAQNALLKTLEE--P 129 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS----------------HHHHHHHHHHHHS--T
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh---------------HHHHHHHHHHhcC--C
Confidence 2222111100 01134566766665533 235699999999982 3467888888887 5
Q ss_pred CCCeEEEeccCCCCCCchhhcCCCccccccccCC
Q 005738 329 TAGVVVLAGTNRPDILDKALLRPGRFDRQITIDK 362 (680)
Q Consensus 329 ~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~ 362 (680)
..++++|.+|+.++.|-|.+++ |+ ..+.+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 5778888899999999999999 77 4555544
No 208
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.1e-09 Score=110.55 Aligned_cols=98 Identities=35% Similarity=0.507 Sum_probs=70.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-hhccCc-hhHHHHHHHHHH----hcCCeEEEEcCcchhhhhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-MFVGVG-PSRVRSLFQEAR----QCAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-~~~g~~-~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r 300 (680)
+|||.||+|+|||+||+.+|+-+++||...+|..+.. .|+|+. +.-+..++..|. +.+..|+||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 5999999999999999999999999999999998864 488875 445566666652 3356899999999998543
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 301 GRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
..-..+ .+-.-+.+...||..++|
T Consensus 308 ~~i~~~-RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTS-RDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cccccc-ccccchhHHHHHHHHhcc
Confidence 221111 111224456666766665
No 209
>PRK08116 hypothetical protein; Validated
Probab=98.86 E-value=1.4e-08 Score=106.54 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhc----cCchhHHHHHHHHHHhcCCeEEEEcCcchhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFV----GVGPSRVRSLFQEARQCAPSIVFIDEIDAIG 297 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~----g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~ 297 (680)
+.|++|+|+||||||+||.++++++ +.++++++.+++...+. +........+++... ...+|+|||+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4689999999999999999999986 78999999988776532 111112223333332 3469999998542
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC-CC----CchhhcCCCcc---ccccccCCCCH
Q 005738 298 RARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP-DI----LDKALLRPGRF---DRQITIDKPDI 365 (680)
Q Consensus 298 ~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~-~~----LD~aLlRpgRf---d~~I~v~~Pd~ 365 (680)
...+.....+..++... . ..+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 191 ---------~~t~~~~~~l~~iin~r---~-~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 ---------RDTEWAREKVYNIIDSR---Y-RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCCHHHHHHHHHHHHHH---H-HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 11233344444554432 1 2234566777754 33 3555655 54 23355555654
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.6e-08 Score=109.07 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=96.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE---Eeech--------------hhhhhhc------------------
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFL---SMSGS--------------DFMEMFV------------------ 266 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i---~is~s--------------~~~~~~~------------------ 266 (680)
.+.|+++||+||+|+||+++|+++|+.+.+..- .-.|. |+.....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 478999999999999999999999997754220 00111 1100000
Q ss_pred -------------cCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 005738 267 -------------GVGPSRVRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT 329 (680)
Q Consensus 267 -------------g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~ 329 (680)
..+-..+|.+.+.+... .-.|++||++|.+. ....|.||+.++. +.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN---------------VAAANALLKTLEE--PP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC---------------HHHHHHHHHHhcC--CC
Confidence 01234667766654322 23599999999982 3467888888886 67
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHH
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIY 375 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~ 375 (680)
.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 788999999999999999999 88 78999999998888887653
No 211
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.85 E-value=2.8e-08 Score=112.26 Aligned_cols=212 Identities=20% Similarity=0.320 Sum_probs=124.9
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-- 264 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-- 264 (680)
.+.+++|.+...+.+.+.+..+.. ....++|+|++|||||++|++++... +.||+.++|+.+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 466899999888888776664332 24579999999999999999999876 579999999876321
Q ss_pred ---hccCchh------H-HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc-----CC-CC
Q 005738 265 ---FVGVGPS------R-VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD-----GF-GT 328 (680)
Q Consensus 265 ---~~g~~~~------~-vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md-----~~-~~ 328 (680)
.+|.... . ....|..+ ..+.|||||||.|. ...+..+..++..-. +. ..
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP------------LDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC------------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1221100 0 01112222 34689999999983 233444444443311 00 01
Q ss_pred CCCeEEEeccCCCC-------CCchhhcCCCccccccccCCCCHHHHHH----HHHHHhhcc----cCCC-Cc-chhHHH
Q 005738 329 TAGVVVLAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQIYLKKL----KLDN-EP-SFYSQR 391 (680)
Q Consensus 329 ~~~ViVIaaTN~~~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~~----~l~~-~~-d~~l~~ 391 (680)
..++.+|++|+..- .+.+.|.. || ..+.+..|+..+|.+ +++++++.. +... .. ...+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23467888887531 23444444 55 245667777776654 445555432 1111 11 122344
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 392 LAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 392 la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
|....---+-++|++++++++..+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 444443334578888888876554 45678888875443
No 212
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.81 E-value=6.1e-08 Score=114.44 Aligned_cols=130 Identities=24% Similarity=0.229 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechhhhhhh-ccCchhHH-HHHHHHHHhcCCeEEEEcCc
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSMSGSDFMEMF-VGVGPSRV-RSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is~s~~~~~~-~g~~~~~v-r~lf~~A~~~~P~ILfIDEi 293 (680)
+-..+|||+|+||||||.+|+++++.. |.++..+.+....... ...++-.+ ..++.. ...++++|||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEE---cCCCeEEecch
Confidence 344579999999999999999999854 2355554444332100 00010000 001111 12369999999
Q ss_pred chhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC-----------CCCCCeEEEeccCCCC-------------CCchhhc
Q 005738 294 DAIGRARGRGGFSGGNDERESTLNQLLVEMDGF-----------GTTAGVVVLAGTNRPD-------------ILDKALL 349 (680)
Q Consensus 294 D~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~-----------~~~~~ViVIaaTN~~~-------------~LD~aLl 349 (680)
|.+. ...+ ..|+..|+.- .-+.++.||||+|... .|+++|+
T Consensus 567 dkms------------~~~Q---~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 567 DKCH------------NESR---LSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhCC------------HHHH---HHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 9882 2223 3344444321 1135689999999742 4689999
Q ss_pred CCCcccccc-ccCCCCHHHHHHHH
Q 005738 350 RPGRFDRQI-TIDKPDIKGRDQIF 372 (680)
Q Consensus 350 RpgRfd~~I-~v~~Pd~~eR~~Il 372 (680)
+ |||..+ .++.|+.+.=+.|-
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHH
Confidence 9 999765 45677765444443
No 213
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.81 E-value=4.9e-08 Score=109.72 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=121.7
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-- 264 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-- 264 (680)
.+.+++|.+.....+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 455788888777776665554332 23579999999999999999998764 579999999876322
Q ss_pred ---hccCchhH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----C
Q 005738 265 ---FVGVGPSR-------VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----T 328 (680)
Q Consensus 265 ---~~g~~~~~-------vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~ 328 (680)
.+|..... ....|..| ..++|||||||.|. ...+..+..++..-. ... .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP------------LVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC------------HHHHHHHHHHHhcCcEEeCCCCcee
Confidence 22221100 01122222 24799999999983 233344444443311 011 1
Q ss_pred CCCeEEEeccCCCCCCchhhcCCCcccc-------ccccCCCCHHHHHH----HHHHHhhcccC----C-CCc-chhHHH
Q 005738 329 TAGVVVLAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQIYLKKLKL----D-NEP-SFYSQR 391 (680)
Q Consensus 329 ~~~ViVIaaTN~~~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~----Il~~~l~~~~l----~-~~~-d~~l~~ 391 (680)
..++.+|++||..- ..+.+.|+|.. .+.+..|+..+|.+ ++..++.+... . ... ...+..
T Consensus 276 ~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23478889988532 13333444433 46678888888765 33344433211 1 111 112234
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 392 LAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 392 la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
|....---+-++|++++++|+..+ ....|+.+|+...
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 444442334578888888876543 4557888777543
No 214
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.4e-07 Score=100.97 Aligned_cols=156 Identities=20% Similarity=0.268 Sum_probs=102.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe--E--Eeec---------hhhhhh--hc---c------CchhHHHHHH
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPF--L--SMSG---------SDFMEM--FV---G------VGPSRVRSLF 277 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~--i--~is~---------s~~~~~--~~---g------~~~~~vr~lf 277 (680)
.+.|+.+||+||+|+||+++|.++|+.+-+.- - ...+ .|+.-. .. | .+-..+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46789999999999999999999998663310 0 0000 011000 00 1 1234567666
Q ss_pred HHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCc
Q 005738 278 QEARQCA----PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGR 353 (680)
Q Consensus 278 ~~A~~~~----P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgR 353 (680)
+.+.... -.|++||++|.+. ....|.||+.++. +..++++|.+|+.++.|-|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAIN---------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhC---------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 6554322 2599999999982 2467888888887 55677788888989999999999 8
Q ss_pred cccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 354 FDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 354 fd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
+ ..+.|+.|+.++..+.|... +.+. . ....++..+.|..+..+
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~~----~~~~--~-~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLAQ----GVSE--R-AAQEALDAARGHPGLAA 206 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHHc----CCCh--H-HHHHHHHHcCCCHHHHH
Confidence 8 67889999988777766532 2221 1 12345666666554433
No 215
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.2e-07 Score=101.67 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=95.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe--EEeech--------------hhhhhh--cc--CchhHHHHHHHHHH
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSMSGS--------------DFMEMF--VG--VGPSRVRSLFQEAR 281 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~--i~is~s--------------~~~~~~--~g--~~~~~vr~lf~~A~ 281 (680)
.+.|+++||+||+|+||+++|+++|+.+-+.- -.-.|. |+..-. -| .+-..+|++.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999999764311 000111 110000 01 23456777766654
Q ss_pred hc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccc
Q 005738 282 QC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQ 357 (680)
Q Consensus 282 ~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~ 357 (680)
.. .-.|++||++|.+. ....|.||+.++. +..++++|.+|+.++.|.|.+++ |+ ..
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~---------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLT---------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred hccccCCceEEEEechhhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 32 23599999999982 2467888888887 66778888899999999999998 88 67
Q ss_pred cccCCCCHHHHHHHHHHH
Q 005738 358 ITIDKPDIKGRDQIFQIY 375 (680)
Q Consensus 358 I~v~~Pd~~eR~~Il~~~ 375 (680)
+.+++|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999988877777654
No 216
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=3.1e-07 Score=100.08 Aligned_cols=224 Identities=19% Similarity=0.232 Sum_probs=146.0
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhhhh---
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDFME--- 263 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~~~--- 263 (680)
..+.|-+..+..+++|+.. .+...-+..++++|.||||||.+..-+-... ....++++|.++.+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4578888888888888765 2234456789999999999999988776544 22357888865321
Q ss_pred -------hh----ccCc-hhHHHHHHHHH-HhcC-CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 005738 264 -------MF----VGVG-PSRVRSLFQEA-RQCA-PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT 329 (680)
Q Consensus 264 -------~~----~g~~-~~~vr~lf~~A-~~~~-P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~ 329 (680)
.+ .+.+ .......|..- .... +-++++||+|.|+.+. +.+++.+..+ +.+ ++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~------------~~vLy~lFew-p~l-p~ 287 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS------------QTVLYTLFEW-PKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc------------cceeeeehhc-ccC-Cc
Confidence 11 1222 12233344433 2233 6799999999997432 2345555433 222 46
Q ss_pred CCeEEEeccCCCCCCchhhcC----CCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHH
Q 005738 330 AGVVVLAGTNRPDILDKALLR----PGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIA 405 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlR----pgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~ 405 (680)
.++++|+..|..+.-|..|.| -+--...+.|++++.++..+||...+.........+..++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 779999999988776665543 122346789999999999999999998876655555556777888888886 554
Q ss_pred ---HHHHHHHHHHHHhcC----------------CcccHHHHHHHHHHHhcc
Q 005738 406 ---NVCNEAALIAARNES----------------AQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 406 ---~lv~eAa~~a~r~~~----------------~~It~~d~~~Al~~v~~g 438 (680)
.+|+.|..++....+ ..|..+++..++..+...
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 556766666655432 234466666666665544
No 217
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.74 E-value=6.3e-09 Score=96.00 Aligned_cols=111 Identities=31% Similarity=0.354 Sum_probs=57.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech-hhh-hhhccCchhHH-HHHHHHHHh-cCCeEEEEcCcchhhhhcCC
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGS-DFM-EMFVGVGPSRV-RSLFQEARQ-CAPSIVFIDEIDAIGRARGR 302 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s-~~~-~~~~g~~~~~v-r~lf~~A~~-~~P~ILfIDEiD~L~~~r~~ 302 (680)
++||.|+||+|||++|+++|+.++..|..+.+. ++. +...|..--.. ...|...+. --..|+++|||....
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 489999999999999999999999999988874 332 11122110000 000000000 001599999996652
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCC---------CCCCCeEEEeccCCCC-----CCchhhcCCCcc
Q 005738 303 GGFSGGNDERESTLNQLLVEMDGF---------GTTAGVVVLAGTNRPD-----ILDKALLRPGRF 354 (680)
Q Consensus 303 ~~~~~~~~~~~~~l~~LL~~md~~---------~~~~~ViVIaaTN~~~-----~LD~aLlRpgRf 354 (680)
.++.+.||+.|... .-...++||||-|..+ .|+.+++. ||
T Consensus 76 ----------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ----------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 34566666666532 2235689999999776 57888887 77
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.9e-07 Score=100.98 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=94.8
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeech--------------hhhhhhc-----cCchhHHHHHHHH
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGS--------------DFMEMFV-----GVGPSRVRSLFQE 279 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s--------------~~~~~~~-----g~~~~~vr~lf~~ 279 (680)
..+.|+.+||+||+|+||+++|+++|+.+-+. --.-.|. |+..... ..+-..+|++.+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 35678999999999999999999999976331 0000111 1110000 1233467776665
Q ss_pred HHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccc
Q 005738 280 ARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFD 355 (680)
Q Consensus 280 A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd 355 (680)
+... ...|++||++|.+. .+..|.||+.++. +..++++|..|+.++.|-|.+++ |+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT---------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HhhccccCCceEEEEcchHhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 5432 33599999999982 3467888888887 67788888999999999999999 884
Q ss_pred cccccCCCCHHHHHHHHHH
Q 005738 356 RQITIDKPDIKGRDQIFQI 374 (680)
Q Consensus 356 ~~I~v~~Pd~~eR~~Il~~ 374 (680)
.+.+++|+.++..+.|..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred -cccCCCCCHHHHHHHHHH
Confidence 689999998777766653
No 219
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.72 E-value=1.9e-08 Score=94.71 Aligned_cols=105 Identities=27% Similarity=0.444 Sum_probs=70.3
Q ss_pred ccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhhhhhhccCchh
Q 005738 195 AGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG---VPFLSMSGSDFMEMFVGVGPS 271 (680)
Q Consensus 195 ~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~---~~~i~is~s~~~~~~~g~~~~ 271 (680)
+|.+.+.+++++-+..+.. ....|||+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4777888888887776543 246899999999999999999998774 477777777642
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
.++++.+ ..+.|||+|+|.| +.+.+..+.+++...+ ..++.+|+++.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L------------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~ 108 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL------------SPEAQRRLLDLLKRQE----RSNVRLIASSS 108 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-------------HHHHHHHHHHHHHCT----TTTSEEEEEEC
T ss_pred --HHHHHHc---CCCEEEECChHHC------------CHHHHHHHHHHHHhcC----CCCeEEEEEeC
Confidence 3355554 5589999999998 3344455555555422 33445555554
No 220
>PRK12377 putative replication protein; Provisional
Probab=98.71 E-value=8.7e-08 Score=99.20 Aligned_cols=101 Identities=24% Similarity=0.272 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCc--hhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVG--PSRVRSLFQEARQCAPSIVFIDEIDAIGRA 299 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~--~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~ 299 (680)
..+++|+||||||||+||.|+++++ +..++.++..++.......- ......+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~--- 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ--- 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC---
Confidence 3689999999999999999999987 67888888888776432110 00112233332 34579999999654
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 300 RGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 300 r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
..++....++.+++..--. ...-+|.|||..
T Consensus 176 -------~~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 176 -------RETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred -------CCCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 1233445677777655321 223456678854
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.68 E-value=1.3e-07 Score=97.76 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=67.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC---chhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV---GPSRVRSLFQEARQCAPSIVFIDEIDAIGRA 299 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~---~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~ 299 (680)
.+++|+|+||||||+|+.++|.++ +.+++.++.+++...+... .......+++... .+++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 589999999999999999999987 7788999998887654321 1112233444433 46799999997651
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 300 RGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 300 r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
..+.....+++++..-- .....+|.+||..
T Consensus 176 --------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 176 --------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 23344557777775421 1223566678853
No 222
>PRK15115 response regulator GlrR; Provisional
Probab=98.66 E-value=4.1e-07 Score=102.00 Aligned_cols=208 Identities=23% Similarity=0.313 Sum_probs=118.4
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhh----
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMF---- 265 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~---- 265 (680)
.++|.......+.+.+..+. .....++|+|++|||||++|+++.... +.||+.++|..+.+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 46676666555554444322 123578999999999999999998875 5799999998753221
Q ss_pred -ccCchh-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----CCCC
Q 005738 266 -VGVGPS-------RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----TTAG 331 (680)
Q Consensus 266 -~g~~~~-------~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~~~~ 331 (680)
+|.... ....+|..+ ..+.|||||||.|. ...+..+..++..-. ... ...+
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~ 269 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMP------------APLQVKLLRVLQERKVRPLGSNRDIDID 269 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCC------------HHHHHHHHHHHhhCCEEeCCCCceeeee
Confidence 111100 001112222 34799999999983 233444444443211 111 1235
Q ss_pred eEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhhcc----cCCC--CcchhHHHHHh
Q 005738 332 VVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLKKL----KLDN--EPSFYSQRLAA 394 (680)
Q Consensus 332 ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~~----~l~~--~~d~~l~~la~ 394 (680)
+.+|++|+.. ++..+ ..|+|. ..+.+..|+..+|.+ +++++++.. .... -.+..+..|..
T Consensus 270 ~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (444)
T PRK15115 270 VRIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 (444)
T ss_pred EEEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 7888888853 33333 335553 245677888888864 334444432 1111 11222455555
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 395 LTPGFAGADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 395 ~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
..-.-+.++|.+++++|+.. .....|+.+++...
T Consensus 347 ~~WpgNvreL~~~i~~~~~~---~~~~~i~~~~l~~~ 380 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVAL---TSSPVISDALVEQA 380 (444)
T ss_pred CCCCChHHHHHHHHHHHHHh---CCCCccChhhhhhh
Confidence 55233557888888887654 34557887776543
No 223
>PRK08181 transposase; Validated
Probab=98.64 E-value=1.6e-07 Score=98.41 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV-GPSRVRSLFQEARQCAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r 300 (680)
..+++|+||||||||+||.+++.++ |..+++++..++...+... ........+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~--- 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT--- 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc---
Confidence 3689999999999999999999755 7788889988887654211 111223344433 346799999997762
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 301 GRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.++.....+.+++....+ + + -+|.|||.+
T Consensus 181 -------~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~~ 209 (269)
T PRK08181 181 -------KDQAETSVLFELISARYE---R-R-SILITANQP 209 (269)
T ss_pred -------CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCCC
Confidence 233344566666655322 1 2 356677754
No 224
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.64 E-value=1.8e-08 Score=114.34 Aligned_cols=183 Identities=25% Similarity=0.330 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccccccceeeecccCCCcccccccccchHHHHHHHHHH
Q 005738 129 WYQELMRFAPTALLFGALWFMGRKMQSGLGVGGPGGRGGRGIFNIGKATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFV 208 (680)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v 208 (680)
.|+.+..++| ++++++.|+.+++.-| ++|+...++.......++..-.++.++-+.....+|.++.
T Consensus 298 gy~~~s~v~P--~li~ap~~f~g~i~~G------------~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~ 363 (604)
T COG4178 298 GYGWLSVVLP--ILIAAPRYFSGQITFG------------GLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFR 363 (604)
T ss_pred hhhHHHHHHH--HHhccHhhhcCcChHH------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555666777 6778888988877644 5677677777766666677777888888888888888887
Q ss_pred HHhc----ChhhHhh-------------------hcCCCC----------------CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 209 HFLK----NPKKYEE-------------------LGAKIP----------------KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 209 ~~l~----~~~~~~~-------------------~g~~~p----------------~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+. ++..+.. +.+..| ..+|+.||+|||||+|.||+|+-.
T Consensus 364 ~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 364 QALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred HHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 6653 1111111 111122 238999999999999999999843
Q ss_pred -------CCC----eEEee------------------------chhhh---------------------hhhccCchhHH
Q 005738 250 -------GVP----FLSMS------------------------GSDFM---------------------EMFVGVGPSRV 273 (680)
Q Consensus 250 -------~~~----~i~is------------------------~s~~~---------------------~~~~g~~~~~v 273 (680)
+.| .+.+. ..++. ++..+.+++ -
T Consensus 444 P~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEq-Q 522 (604)
T COG4178 444 PWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQ-Q 522 (604)
T ss_pred ccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHH-H
Confidence 122 11111 11111 112233333 3
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.|++..-++|.++||||. +++-+++.+..+.++++. .-.++.||..++++.
T Consensus 523 RlafARilL~kP~~v~LDEA-----------TsALDe~~e~~l~q~l~~-----~lp~~tvISV~Hr~t 575 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEA-----------TSALDEETEDRLYQLLKE-----ELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHcCCCEEEEecc-----------hhccChHHHHHHHHHHHh-----hCCCCEEEEeccchh
Confidence 77899999999999999996 345677788888888865 235678888888764
No 225
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.63 E-value=2.2e-07 Score=104.72 Aligned_cols=211 Identities=21% Similarity=0.300 Sum_probs=120.0
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--- 264 (680)
+.+++|.+.+..++.+.+..+.. .+..+++.|.+||||+++|+++.... +.||+.++|+.+.+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 34688888888777766654322 23578999999999999999998864 579999999775322
Q ss_pred --hccCchhH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC--CC----CC
Q 005738 265 --FVGVGPSR-------VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG--FG----TT 329 (680)
Q Consensus 265 --~~g~~~~~-------vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~--~~----~~ 329 (680)
.+|..... ....|. ....+.|||||||.|. ...+..+..++..-.. .. ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~------------~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP------------LDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC------------HHHHHHHHHHHhcCcEEECCCCceee
Confidence 22211000 001122 2235799999999983 2334455555543110 00 12
Q ss_pred CCeEEEeccCCCC-------CCchhhcCCCccccccccCCCCHHHHH----HHHHHHhhcccCC----C-Cc-chhHHHH
Q 005738 330 AGVVVLAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRD----QIFQIYLKKLKLD----N-EP-SFYSQRL 392 (680)
Q Consensus 330 ~~ViVIaaTN~~~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~----~Il~~~l~~~~l~----~-~~-d~~l~~l 392 (680)
.++.||++|+..- .+.+.|.. |+. .+.+..|+..+|. .+++++++..... . .. ...+..|
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 3567888887532 22233333 332 3456666666554 3445554433111 1 11 1123344
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 393 AALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 393 a~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
....---+-++|++++++|+..+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 44322123478888888877654 45678888886554
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3.5e-07 Score=98.53 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=89.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------------------------eEEeechhh---hhh-hccCchhH
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------------------FLSMSGSDF---MEM-FVGVGPSR 272 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~-------------------------~i~is~s~~---~~~-~~g~~~~~ 272 (680)
.+.|+++||+||+|+|||++|+.+|+.+.+. |+.++...- ... ....+-..
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 3789999999999999999999999976431 222221100 000 00013456
Q ss_pred HHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhh
Q 005738 273 VRSLFQEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKAL 348 (680)
Q Consensus 273 vr~lf~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aL 348 (680)
+|++.+.+... ...|++||++|.+ +. ...+.++..++... .++.+|.+|+.++.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L------------d~---~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM------------NL---QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC------------CH---HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHH
Confidence 78877766542 2359999999888 22 24455555565542 3466777888899999999
Q ss_pred cCCCccccccccCCCCHHHHHHHHHH
Q 005738 349 LRPGRFDRQITIDKPDIKGRDQIFQI 374 (680)
Q Consensus 349 lRpgRfd~~I~v~~Pd~~eR~~Il~~ 374 (680)
.+ |+ ..+.|++|+.++..+.|..
T Consensus 161 ~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 77 7889999998887776654
No 227
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2.9e-07 Score=98.51 Aligned_cols=134 Identities=20% Similarity=0.228 Sum_probs=94.0
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE-Eeec--------------hhhhhhhc---c--CchhHHHHHHHHH
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-SMSG--------------SDFMEMFV---G--VGPSRVRSLFQEA 280 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i-~is~--------------s~~~~~~~---g--~~~~~vr~lf~~A 280 (680)
..+.|+++||+||.|+||+++|+++|+.+-+.-- .-.| .|+..-.. | .+-..+|.+.+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 3567899999999999999999999986632100 0011 11110001 1 1234667665555
Q ss_pred Hhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCcccc
Q 005738 281 RQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDR 356 (680)
Q Consensus 281 ~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~ 356 (680)
... .-.|++||++|.+. ....|.||+.++. +..++++|..|+.++.|-|.+++ |+ .
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q 160 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN---------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-Q 160 (319)
T ss_pred hhCcccCCceEEEecchhhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-e
Confidence 332 23699999999982 3467888888887 66778888899999999999999 88 5
Q ss_pred ccccCCCCHHHHHHHHHH
Q 005738 357 QITIDKPDIKGRDQIFQI 374 (680)
Q Consensus 357 ~I~v~~Pd~~eR~~Il~~ 374 (680)
.+.++.|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 789999998887776654
No 228
>PRK06526 transposase; Provisional
Probab=98.62 E-value=9.1e-08 Score=99.53 Aligned_cols=100 Identities=22% Similarity=0.348 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV-GPSRVRSLFQEARQCAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r 300 (680)
+.+++|+||||||||+||.+++.++ |..+..++..++.+..... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 5689999999999999999998875 7777778887776654211 111222223322 346799999998762
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 301 GRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.+......+.+++..... +. .+|.+||.+
T Consensus 173 -------~~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 173 -------FEPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred -------CCHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 233444566677655322 12 356677764
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.60 E-value=2.8e-07 Score=106.07 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=124.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhhhhhhccCch--hHH--------HHHHHHHHhcCCeEEEEcCc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFMEMFVGVGP--SRV--------RSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~~~~~~~g~~~--~~v--------r~lf~~A~~~~P~ILfIDEi 293 (680)
.||||.|++||+||+++++++.-+. .||..+..+-=....+|... +.+ ..++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 6899999999999999999999874 58877765544444555431 111 1122222 2269999999
Q ss_pred chhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC-----------CCCCCeEEEeccCCC---CCCchhhcCCCccccccc
Q 005738 294 DAIGRARGRGGFSGGNDERESTLNQLLVEMDGF-----------GTTAGVVVLAGTNRP---DILDKALLRPGRFDRQIT 359 (680)
Q Consensus 294 D~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~-----------~~~~~ViVIaaTN~~---~~LD~aLlRpgRfd~~I~ 359 (680)
..+ ...++..|++-|+.- .-...+++|++-|.. ..|.++++. ||+.++.
T Consensus 103 n~~---------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERL---------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccC---------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 776 235778888877642 123457888874432 458899999 9999999
Q ss_pred cCCCCHHHH-------HHHHHHH--hhcccCCCCcchhHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhcCCcccHHH
Q 005738 360 IDKPDIKGR-------DQIFQIY--LKKLKLDNEPSFYSQRLAAL--TPGF-AGADIANVCNEAALIAARNESAQITMQH 427 (680)
Q Consensus 360 v~~Pd~~eR-------~~Il~~~--l~~~~l~~~~d~~l~~la~~--t~G~-sgadL~~lv~eAa~~a~r~~~~~It~~d 427 (680)
++.|+..+. ..|.+.. +.+..++. ..+..++.. ..|. |.+--..+++-|.-+|+.+++..|+.+|
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~---~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~d 242 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPP---EAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEED 242 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 998876542 2233222 22222211 112222221 2355 6666778888888899999999999999
Q ss_pred HHHHHHHHh
Q 005738 428 FEAAIDRVI 436 (680)
Q Consensus 428 ~~~Al~~v~ 436 (680)
+.+|+.-++
T Consensus 243 v~~Aa~lvL 251 (584)
T PRK13406 243 LALAARLVL 251 (584)
T ss_pred HHHHHHHHH
Confidence 999998875
No 230
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.56 E-value=5.4e-07 Score=94.16 Aligned_cols=185 Identities=23% Similarity=0.279 Sum_probs=118.4
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe------EEeechh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------LSMSGSD 260 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~------i~is~s~ 260 (680)
..-++.|+++++++...+.++.+.- +.| +.|+|||||||||....+.|..+..|. ..++.|+
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 3457899999999998888874432 223 789999999999999999999886651 1122222
Q ss_pred hhhhhccCchh-HHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCe
Q 005738 261 FMEMFVGVGPS-RVRSLFQEARQ-------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV 332 (680)
Q Consensus 261 ~~~~~~g~~~~-~vr~lf~~A~~-------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~V 332 (680)
- .|-..- .-...|+.++. ..+..+++||.|++... ..|+|-..+..+..+ +
T Consensus 104 ~----rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~---------------AQnALRRviek~t~n--~ 162 (360)
T KOG0990|consen 104 D----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD---------------AQNALRRVIEKYTAN--T 162 (360)
T ss_pred c----cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH---------------HHHHHHHHHHHhccc--e
Confidence 1 122211 12235665553 26789999999999432 234444455554444 4
Q ss_pred EEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 005738 333 VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAA 412 (680)
Q Consensus 333 iVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa 412 (680)
.++..+|.+..+.|+++. ||. .+.+.+-+...-...+.+++..-......+.. ..++... -.|++..+|...
T Consensus 163 rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~-~a~~r~s----~gDmr~a~n~Lq 234 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGY-SALGRLS----VGDMRVALNYLQ 234 (360)
T ss_pred EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHH-HHHHHHh----HHHHHHHHHHHH
Confidence 444567999999999998 884 46677777777778888888765554444321 2244333 347776666443
No 231
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.55 E-value=1.1e-06 Score=98.42 Aligned_cols=208 Identities=20% Similarity=0.295 Sum_probs=116.8
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-----
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM----- 264 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~----- 264 (680)
.++|.+.....+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|+.+.+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46777777666655554432 224679999999999999999998654 579999999865322
Q ss_pred hccCchhH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----CCCC
Q 005738 265 FVGVGPSR-------VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----TTAG 331 (680)
Q Consensus 265 ~~g~~~~~-------vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~~~~ 331 (680)
.+|..... ...+|. ....++|||||||.|.. ..+..+..++..-. ... ...+
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISP------------MMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCH------------HHHHHHHHHHccCcEEeCCCCceeeec
Confidence 12211000 001122 22458999999999832 23333333333211 000 1124
Q ss_pred eEEEeccCCCCCCchhhcCCCcccc-------ccccCCCCHHHHHH----HHHHHhhccc----CC-CCc-chhHHHHHh
Q 005738 332 VVVLAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQIYLKKLK----LD-NEP-SFYSQRLAA 394 (680)
Q Consensus 332 ViVIaaTN~~~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~----Il~~~l~~~~----l~-~~~-d~~l~~la~ 394 (680)
+.+|++|+.+- ..+..+|+|.+ .+.+..|+..+|.+ ++++++.+.. .. ... ...+..|..
T Consensus 275 ~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 275 VRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred eEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 67888877532 13334556643 46677888887755 4444544321 11 011 122344444
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 395 LTPGFAGADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 395 ~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
..---+-++|.++++.|+.. .....|+.+|+...
T Consensus 352 ~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~~~ 385 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVL---LTGEYISERELPLA 385 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHh---CCCCccchHhCchh
Confidence 44222457788888876654 34556887777543
No 232
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.51 E-value=3.6e-07 Score=97.57 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV-GPSRVRSLFQEARQCAPSIVFIDEIDAIGRA 299 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~ 299 (680)
..+|++|+||+|||||+||.|+|+++ |.++..++.++|+..+... ....+...++..+ ...+|+|||+.+-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e--- 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE--- 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc---
Confidence 35899999999999999999999987 7888888888876553211 1112233444333 4579999999543
Q ss_pred cCCCCCCCCChH-HHHHHHHHHHh-hcCCCCCCCeEEEeccCCC
Q 005738 300 RGRGGFSGGNDE-RESTLNQLLVE-MDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 300 r~~~~~~~~~~~-~~~~l~~LL~~-md~~~~~~~ViVIaaTN~~ 341 (680)
..++. +..++..++.. |. .+..+|.|||.+
T Consensus 230 -------~~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 230 -------QMSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------cccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 11222 22455555543 22 234667788854
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.49 E-value=7.5e-07 Score=95.98 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=63.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC---chhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV---GPSRVRSLFQEARQCAPSIVFIDEIDAIGRA 299 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~---~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~ 299 (680)
.+++|+||+|||||+||.|+|+++ |..+++++..++...+... ........+.... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e--- 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE--- 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC---
Confidence 789999999999999999999987 7789999998887654221 1111111233322 3479999999654
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 300 RGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 300 r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
..++.....+..++...- .. +--+|.|||.
T Consensus 259 -------~~t~~~~~~Lf~iin~R~---~~-~k~tIiTSNl 288 (329)
T PRK06835 259 -------KITEFSKSELFNLINKRL---LR-QKKMIISTNL 288 (329)
T ss_pred -------CCCHHHHHHHHHHHHHHH---HC-CCCEEEECCC
Confidence 223444455555555421 11 2235667774
No 234
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.47 E-value=3.2e-06 Score=86.79 Aligned_cols=177 Identities=19% Similarity=0.216 Sum_probs=117.9
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-C--CCeEEe---------
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-G--VPFLSM--------- 256 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-~--~~~i~i--------- 256 (680)
-+++.+.+.++....|+.+...-.. .++++|||+|+||-|.+.++-+++ | ++=..+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~~d~------------PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSSTGDF------------PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred chhhhcccHHHHHHHHHHhcccCCC------------CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 3577788888888888766542111 357999999999999999998876 2 221111
Q ss_pred ---------echhhhhh---hccCch-hHHHHHHHHHHhcCC---------eEEEEcCcchhhhhcCCCCCCCCChHHHH
Q 005738 257 ---------SGSDFMEM---FVGVGP-SRVRSLFQEARQCAP---------SIVFIDEIDAIGRARGRGGFSGGNDERES 314 (680)
Q Consensus 257 ---------s~s~~~~~---~~g~~~-~~vr~lf~~A~~~~P---------~ILfIDEiD~L~~~r~~~~~~~~~~~~~~ 314 (680)
+....++. -.|.-. --+.+++++..+.+| .+++|.|.|.|.+.
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d--------------- 142 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD--------------- 142 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH---------------
Confidence 11111111 123222 235566666655443 59999999999432
Q ss_pred HHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHh
Q 005738 315 TLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAA 394 (680)
Q Consensus 315 ~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~ 394 (680)
....|-..|+.+.. .+-+|..+|....+-+++++ |+ ..+.+|.|+.++...++...+++.++....+ .+.++|.
T Consensus 143 AQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~-~l~rIa~ 216 (351)
T KOG2035|consen 143 AQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE-LLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH-HHHHHHH
Confidence 22344444555433 45666677888888888888 76 5789999999999999999999888777644 3577887
Q ss_pred hCCC
Q 005738 395 LTPG 398 (680)
Q Consensus 395 ~t~G 398 (680)
.+.|
T Consensus 217 kS~~ 220 (351)
T KOG2035|consen 217 KSNR 220 (351)
T ss_pred Hhcc
Confidence 7765
No 235
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.46 E-value=6.8e-07 Score=90.04 Aligned_cols=162 Identities=22% Similarity=0.299 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC---CeEEeec-h--------hh-------------h-hhhc------------
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGV---PFLSMSG-S--------DF-------------M-EMFV------------ 266 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~---~~i~is~-s--------~~-------------~-~~~~------------ 266 (680)
...++|+||.|+|||+|++.+.....- ..++++. . .+ . ....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 367899999999999999999998722 2222211 0 11 0 0000
Q ss_pred cCchhHHHHHHHHHHhcC-CeEEEEcCcchhh-hhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCe-EEEeccCCC--
Q 005738 267 GVGPSRVRSLFQEARQCA-PSIVFIDEIDAIG-RARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV-VVLAGTNRP-- 341 (680)
Q Consensus 267 g~~~~~vr~lf~~A~~~~-P~ILfIDEiD~L~-~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~V-iVIaaTN~~-- 341 (680)
......+..+++...... ..||+|||++.+. ... .....+..|...++......++ +|+++++..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 012334566666665543 4899999999995 111 1123444444444443334443 444444410
Q ss_pred -C--CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCC-CcchhHHHHHhhCCCCC
Q 005738 342 -D--ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDN-EPSFYSQRLAALTPGFA 400 (680)
Q Consensus 342 -~--~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-~~d~~l~~la~~t~G~s 400 (680)
+ .-...+. +|+.. +.+++.+.++..++++..++.. ... ..+..++.+...+.|..
T Consensus 170 ~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 170 EEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred HHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 1 1112233 37766 9999999999999999987765 321 23334577777787744
No 236
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=8.6e-07 Score=82.35 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=69.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRG 303 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~ 303 (680)
+.++|+||.|+|||++++.+++... -.++++++.+.......... +.+.+.+.....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4689999999999999999998876 77888888765432111100 223333322225689999999887
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC---CchhhcCCCccccccccCCCCHHH
Q 005738 304 GFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI---LDKALLRPGRFDRQITIDKPDIKG 367 (680)
Q Consensus 304 ~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~---LD~aLlRpgRfd~~I~v~~Pd~~e 367 (680)
+.....+..+... ....-+|+.+++.... ....+ +||.. .+.+.+.+..|
T Consensus 74 ------~~~~~~lk~l~d~-----~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 ------PDWEDALKFLVDN-----GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------ccHHHHHHHHHHh-----ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 1234455555442 1112233333332221 22233 46874 67777777654
No 237
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.45 E-value=3.4e-06 Score=96.00 Aligned_cols=204 Identities=17% Similarity=0.207 Sum_probs=110.3
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee-chhhh----
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS-GSDFM---- 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is-~s~~~---- 262 (680)
..+.+||+-...-.++++.++..... +....+-+||+||||||||+.++++|+++|..+.... ...+.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~ 87 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDN 87 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccc
Confidence 45788999987766677666654111 2222346788999999999999999999988766542 22210
Q ss_pred --hhhccCc------hhH---HHHH-HHHHHh-----------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 263 --EMFVGVG------PSR---VRSL-FQEARQ-----------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 263 --~~~~g~~------~~~---vr~l-f~~A~~-----------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
..|.+.. ..+ ...+ +..++. ..+.||+|||+-.+... ........+.++
T Consensus 88 ~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~L~~~ 159 (519)
T PF03215_consen 88 QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREALRQY 159 (519)
T ss_pred ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHHHHHH
Confidence 0111110 011 1111 111121 24579999998655321 112333444444
Q ss_pred HHhhcCCCCCC-CeEEEec-cC------CC--------CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcc----
Q 005738 320 LVEMDGFGTTA-GVVVLAG-TN------RP--------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL---- 379 (680)
Q Consensus 320 L~~md~~~~~~-~ViVIaa-TN------~~--------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~---- 379 (680)
+.. ... .+|+|.+ ++ .. ..+++.++...++ .+|.|.+-...-..+.|+..+...
T Consensus 160 l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 160 LRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 432 222 5666665 11 11 1345666553344 457776666555555555544432
Q ss_pred -c--CCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 380 -K--LDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 380 -~--l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
. ...+....++.|+..+.| ||+..++.-...|.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 1 111112224667766554 99999997776665
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.43 E-value=8.8e-07 Score=92.21 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCch-hH
Q 005738 197 CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVGP-SR 272 (680)
Q Consensus 197 ~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~~-~~ 272 (680)
...+...+..++.++. .+.+++|+||||||||+||-|++.++ |.+++.++.++++...-..-. ..
T Consensus 88 ~~~~l~~~~~~~~~~~-----------~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~ 156 (254)
T COG1484 88 DKKALEDLASLVEFFE-----------RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGR 156 (254)
T ss_pred hHHHHHHHHHHHHHhc-----------cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCc
Confidence 3445555555555543 35799999999999999999999987 788999999998765321111 01
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchh
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAI 296 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L 296 (680)
...-+... -....+|+|||+-..
T Consensus 157 ~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 157 LEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred hHHHHHHH-hhcCCEEEEecccCc
Confidence 11111111 123479999998554
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=98.43 E-value=6.8e-07 Score=93.37 Aligned_cols=101 Identities=25% Similarity=0.373 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV-GPSRVRSLFQEARQCAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r 300 (680)
..+++|+||||||||+||.+++..+ |..+.++++.++...+... ....+...+... ...+++++|||++.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~--- 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP--- 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC---
Confidence 4679999999999999999997764 7778888887776443211 111233445443 2456899999997652
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 301 GRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.+......+.+++....+ +. -+|.|||.+
T Consensus 178 -------~~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 178 -------FSQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -------CChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 122333455566554322 22 256677754
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.40 E-value=3.9e-07 Score=89.87 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCc-hhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVG-PSRVRSLFQEARQCAPSIVFIDEIDAIGRA 299 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~ 299 (680)
...|++|+||||||||+||.+++.++ |.++.+++.+++++...... .......+.... .+.+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~--- 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE--- 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee---
Confidence 35799999999999999999999876 88899999999887643221 112334444443 3479999998432
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 300 RGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 300 r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
..++.....+.+++..--+ + + -.|.|||..
T Consensus 121 -------~~~~~~~~~l~~ii~~R~~---~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 121 -------PLSEWEAELLFEIIDERYE---R-K-PTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHH---T---EEEEEESS-
T ss_pred -------eecccccccchhhhhHhhc---c-c-CeEeeCCCc
Confidence 1233334455555554322 2 2 345588853
No 241
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.40 E-value=2.4e-06 Score=90.29 Aligned_cols=210 Identities=23% Similarity=0.351 Sum_probs=121.9
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
....|+.+++.+...+.+.+-...+. .....+||.|..||||-++||++.... ..||+.+||+.+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~A----------mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLA----------MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhh----------ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 34467788887776666655443322 123467999999999999999998765 68999999987643
Q ss_pred h-----hccCch--hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC-CC-------C
Q 005738 264 M-----FVGVGP--SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG-FG-------T 328 (680)
Q Consensus 264 ~-----~~g~~~--~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~-~~-------~ 328 (680)
. .+|..+ ..-..+|++|.. +-+|+|||..+ +...+..+..+|. || |. -
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm------------Sp~lQaKLLRFL~--DGtFRRVGee~Ev 331 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM------------SPRLQAKLLRFLN--DGTFRRVGEDHEV 331 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc------------CHHHHHHHHHHhc--CCceeecCCcceE
Confidence 2 334332 334567888765 78999999766 3445555555553 22 11 1
Q ss_pred CCCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH--------HHHHHhhcccCCCCc-c-hhHHH
Q 005738 329 TAGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ--------IFQIYLKKLKLDNEP-S-FYSQR 391 (680)
Q Consensus 329 ~~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~--------Il~~~l~~~~l~~~~-d-~~l~~ 391 (680)
.-+|-|||+|..+-. .+...|+|- .+..+..|...+|.+ ++..+..+++..... + ..+..
T Consensus 332 ~vdVRVIcatq~nL~---~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~ 408 (511)
T COG3283 332 HVDVRVICATQVNLV---ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTV 408 (511)
T ss_pred EEEEEEEecccccHH---HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHH
Confidence 234899999986421 222223332 356677888877754 334444444433221 1 11233
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 005738 392 LAALTPGFAGADIANVCNEAALIAARNESAQITMQHFE 429 (680)
Q Consensus 392 la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~ 429 (680)
+.+..---+-++|.|++-+|+-.+ ....++.+|+.
T Consensus 409 L~~y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 409 LTRYAWPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 333222123366777666665433 33445555443
No 242
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.35 E-value=7.2e-07 Score=100.81 Aligned_cols=186 Identities=25% Similarity=0.388 Sum_probs=113.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--CCCeEEeechhhhh-----hhccCchh--------HHHHHHHHHHhcCCeEEEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES--GVPFLSMSGSDFME-----MFVGVGPS--------RVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~--~~~~i~is~s~~~~-----~~~g~~~~--------~vr~lf~~A~~~~P~ILfI 290 (680)
-.+||.|.|||||-.|||++.... ..||+.++|..+-+ .++|..+. -.+..+++|-. ..+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence 468999999999999999998755 57999999976543 23333222 12223333322 69999
Q ss_pred cCcchhhhhcCCCCCCCCChHHHHHHHHHHHh-----hcCCCCCCCeEEEeccCCCCCCchhhcCCCcccc-------cc
Q 005738 291 DEIDAIGRARGRGGFSGGNDERESTLNQLLVE-----MDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDR-------QI 358 (680)
Q Consensus 291 DEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~-----md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~-------~I 358 (680)
|||..+ .-..+..+.+.|.+ +.+-...-.|-||+||+++-. .|.+-|||-+ .+
T Consensus 414 deIgd~------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 414 DEIGDM------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHhhhc------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCe
Confidence 999766 23455566666655 223222335889999997543 6778888864 34
Q ss_pred ccCCCCHHHHHH---HHHHHhhcc---cCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 359 TIDKPDIKGRDQ---IFQIYLKKL---KLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 359 ~v~~Pd~~eR~~---Il~~~l~~~---~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
.+.+|+..+|.+ .|..++.+. .+..+.+....-++..=+| +-++|.+++..++..+ ....|...|+...+
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 566888877765 333333322 2222333322223333455 4478888888766443 45556666666555
Q ss_pred H
Q 005738 433 D 433 (680)
Q Consensus 433 ~ 433 (680)
-
T Consensus 555 ~ 555 (606)
T COG3284 555 L 555 (606)
T ss_pred H
Confidence 3
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=2.1e-06 Score=79.20 Aligned_cols=98 Identities=22% Similarity=0.299 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc--------CCCeEEeechhhh------hh----h----cc-CchhHHHHHHHHH-
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES--------GVPFLSMSGSDFM------EM----F----VG-VGPSRVRSLFQEA- 280 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~--------~~~~i~is~s~~~------~~----~----~g-~~~~~vr~lf~~A- 280 (680)
.+.++++||||+|||++++.++... ..+++.+++.... .. + .. .....+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 6778888775432 11 0 01 1223333444333
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 281 RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
......+|+|||+|.+. + ...++.|...++ ...-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444599999999983 1 346666655555 233334444443
No 244
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-06 Score=101.02 Aligned_cols=128 Identities=28% Similarity=0.343 Sum_probs=88.0
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh----
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM---- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~---- 264 (680)
+.|+|++++...+-+.|..-+..-. +. .++-.+||.||.|+|||-||+++|..+ .-.++.++.++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~-~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK-DP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC-CC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 3589999999999888776332110 00 245568899999999999999999987 446999999986642
Q ss_pred -----hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------CCC
Q 005738 265 -----FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---------TTA 330 (680)
Q Consensus 265 -----~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------~~~ 330 (680)
|+|. .....+.+..+++.-+||+|||||.- +. .+++.|++.+|... .-.
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA------------h~---~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA------------HP---DVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc------------CH---HHHHHHHHHHhcCccccCCCcEeecc
Confidence 3333 23345666666666799999999864 22 34555555555432 124
Q ss_pred CeEEEeccCC
Q 005738 331 GVVVLAGTNR 340 (680)
Q Consensus 331 ~ViVIaaTN~ 340 (680)
++|||.|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 5899999885
No 245
>PRK06921 hypothetical protein; Provisional
Probab=98.28 E-value=1.4e-06 Score=91.36 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcch
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDA 295 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 295 (680)
..+++|+||||||||+|+.|+|+++ +..+++++..+++..+... .......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4789999999999999999999976 6778888877765543111 01111222222 3457999999943
No 246
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.27 E-value=2e-06 Score=90.54 Aligned_cols=165 Identities=20% Similarity=0.293 Sum_probs=82.3
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-C--eEEeechhhhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV-P--FLSMSGSDFMEM 264 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~-~--~i~is~s~~~~~ 264 (680)
.+.|.++.=.-.--.+...+++.+- ...+++||+||+|||||.+++.+-....- . ...++++....
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~----------~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt- 74 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLL----------SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT- 74 (272)
T ss_dssp -------T---HHHHHHHHHHHHHH----------HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHH----------HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-
Confidence 3455555444333334445555421 12368999999999999999988766532 2 22344433211
Q ss_pred hccCchhHHHHHHHHH-----------HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC------
Q 005738 265 FVGVGPSRVRSLFQEA-----------RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG------ 327 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A-----------~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~------ 327 (680)
...+..+.+.. .....+|+||||+..-.... .+.. ..-..+.|++.. .|+-
T Consensus 75 -----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~-----ygtq-~~iElLRQ~i~~-~g~yd~~~~~ 142 (272)
T PF12775_consen 75 -----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDK-----YGTQ-PPIELLRQLIDY-GGFYDRKKLE 142 (272)
T ss_dssp -----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---T-----TS---HHHHHHHHHHHC-SEEECTTTTE
T ss_pred -----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCC-----CCCc-CHHHHHHHHHHh-cCcccCCCcE
Confidence 11122111111 11234699999997542211 1111 122344444432 1221
Q ss_pred --CCCCeEEEeccCCCC---CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 328 --TTAGVVVLAGTNRPD---ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 328 --~~~~ViVIaaTN~~~---~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
.-.++.++|++|.+. .+++.++| .| ..+.++.|+.+....|+..++..
T Consensus 143 ~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 143 WKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred EEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHhh
Confidence 124578889888542 47788888 67 67899999999999888877754
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.26 E-value=5.7e-06 Score=78.35 Aligned_cols=110 Identities=23% Similarity=0.266 Sum_probs=64.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhh----------------------ccC--chhHHHHHHHHH
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMF----------------------VGV--GPSRVRSLFQEA 280 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~----------------------~g~--~~~~vr~lf~~A 280 (680)
++|+||||+|||++++.++..+ +.++++++........ ... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 5899999999999999998877 5667776654322100 000 011112234556
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 281 RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
....|.+++|||+..+....... ..+........+..++..+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 66788999999999986543210 01122233445555554442 34566666666543
No 248
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.24 E-value=3.7e-05 Score=85.62 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=88.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec-hhh------------hhhhccCchhHHHHHHHHHH-----------
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSG-SDF------------MEMFVGVGPSRVRSLFQEAR----------- 281 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~-s~~------------~~~~~g~~~~~vr~lf~~A~----------- 281 (680)
+-+||+||+||||||.++.+++++|..++.-+. -.+ .......--.........+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 347899999999999999999999988776541 111 11001111112222222231
Q ss_pred -hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCC------Ccc
Q 005738 282 -QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRP------GRF 354 (680)
Q Consensus 282 -~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRp------gRf 354 (680)
...|.+|+|||+=..+.. + ....+..+|.++-....-.-|++|.-++.++..++..+.| .|+
T Consensus 191 ~~~~~~liLveDLPn~~~~---------d--~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYR---------D--DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhh---------h--hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 124679999998665322 1 1222333333322222222233333233334433332221 244
Q ss_pred ccccccCCCCHHHHHHHHHHHhhcccCCCC-----cchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 355 DRQITIDKPDIKGRDQIFQIYLKKLKLDNE-----PSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 355 d~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~-----~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.+|.|.+-...-.++.|..+++....... ....++.++.... +||+..++.-.+.+
T Consensus 260 -~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 260 -SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred -ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcC----ccHHHHHhHhhhhc
Confidence 34566555555556666666654332222 1222345555444 49999999877665
No 249
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.7e-06 Score=88.24 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=23.7
Q ss_pred hcCCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005738 220 LGAKIPKG--ALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 220 ~g~~~p~g--vLL~GppGtGKT~LAralA~e 248 (680)
+...+++| +-|.||+|||||||.+.+|+-
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455555 789999999999999999983
No 250
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.23 E-value=3.1e-06 Score=75.55 Aligned_cols=102 Identities=28% Similarity=0.367 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHHHHHhcC------CccccchhHHHHHhcCCCCccEEEEecCeEEEEEEccCCCCCCCCCCCCCCCCCC
Q 005738 4 IGFFPFPILCSLIVFLTCF------TFSQISFQEFKNKLLEPGLVDRIVVTNKSVAKVFVKSTPRSTNETNDDFTQSPVN 77 (680)
Q Consensus 4 ~~~~~~~~ll~~~~~l~~~------s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
|++|++.+++++.++.+++ ..++|+||+|++ ++++|+|++|+|.++.+.......... .....
T Consensus 1 ~~~~ili~~vi~~l~~~~~~~~~~~~~~~i~YS~F~~-~l~~g~V~~V~i~~~~~~~~~~~~~~~-~~~~~--------- 69 (110)
T PF06480_consen 1 IILYILIILVILLLFNFFFFNSNNSQTKEISYSEFLQ-MLEKGNVKKVVIQNDKITEPKKDNPTG-DIEGK--------- 69 (110)
T ss_dssp ------------------S------SSEE--HHHHHH-TGGGT-EEEEEEETTTEE----------EEEE----------
T ss_pred CcceehhHHHHHHHHHHHHhhcccCCCcEECHHHHHH-HHHcCCEEEEEEECCEEEEeeeccccc-ccccc---------
Confidence 4555554555444444332 228999999995 799999999999987654110000000 00000
Q ss_pred CCCCCCCCCcceEEEEeCCchhHHHHHHHHHHHcCCCCCCc
Q 005738 78 GSPDKRNLSQCKYYFNIGSVESFEEKLEEAQEALGIDPHDY 118 (680)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (680)
... .......+....+..+.|.+.|.+++.+.|+.+...
T Consensus 70 -~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~ 108 (110)
T PF06480_consen 70 -TKD-GSKYTTFYTPSIPSVDSFDEFLIEALVEKGVKYESV 108 (110)
T ss_dssp -TTT-S-STT--EEEE-S-HHHHHHHHHHHHHHTT--TTT-
T ss_pred -ccC-CCccEEEEEcCCCCCHHHHHHHHHHHHHCCCcccee
Confidence 000 001111123344557889999999999999876543
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.22 E-value=1.1e-05 Score=82.83 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGG 304 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~ 304 (680)
..|..++||+|||||..+|.+|..+|.+++.++|++-. ....+.++|.-+... -+.+++||++.|-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-Cchhhhhhhhhhh-------
Confidence 35778999999999999999999999999999998854 345667777766654 4799999999882
Q ss_pred CCCCChHHHHHHHHHHHhh----cCC-----------CCCCCeEEEeccCC----CCCCchhhcCCCccccccccCCCCH
Q 005738 305 FSGGNDERESTLNQLLVEM----DGF-----------GTTAGVVVLAGTNR----PDILDKALLRPGRFDRQITIDKPDI 365 (680)
Q Consensus 305 ~~~~~~~~~~~l~~LL~~m----d~~-----------~~~~~ViVIaaTN~----~~~LD~aLlRpgRfd~~I~v~~Pd~ 365 (680)
.+.-.++.+.+..+ ..- .-+.++-++.|.|. -..|++.|+. -| |.+.+..||.
T Consensus 98 -----~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 98 -----EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDL 169 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--H
T ss_pred -----HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCH
Confidence 22223333333322 110 01123334445552 2468888876 55 8899999996
Q ss_pred HHHHHH
Q 005738 366 KGRDQI 371 (680)
Q Consensus 366 ~eR~~I 371 (680)
+-..++
T Consensus 170 ~~I~ei 175 (231)
T PF12774_consen 170 SLIAEI 175 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.21 E-value=2.9e-05 Score=88.16 Aligned_cols=128 Identities=31% Similarity=0.358 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec--hhhhhhhccCch-hHHHHHHHHHH---hcCCeEEEEcCcchhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSG--SDFMEMFVGVGP-SRVRSLFQEAR---QCAPSIVFIDEIDAIG 297 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~--s~~~~~~~g~~~-~~vr~lf~~A~---~~~P~ILfIDEiD~L~ 297 (680)
-.-+|||+|.||||||.+.+.+++-+-.-. +.|+ +.-...-.+... ..-+++.-+.- ....+|.+|||+|.+.
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 345799999999999999999998763322 2222 111100000000 00011111110 1224699999999982
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHh------hcCC--CCCCCeEEEeccCCCC-------------CCchhhcCCCcccc
Q 005738 298 RARGRGGFSGGNDERESTLNQLLVE------MDGF--GTTAGVVVLAGTNRPD-------------ILDKALLRPGRFDR 356 (680)
Q Consensus 298 ~~r~~~~~~~~~~~~~~~l~~LL~~------md~~--~~~~~ViVIaaTN~~~-------------~LD~aLlRpgRfd~ 356 (680)
+..+.+|.+.+++ .-|+ .-+.+.-|||+.|... .|+|.|++ |||.
T Consensus 540 ------------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDL 605 (804)
T KOG0478|consen 540 ------------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDL 605 (804)
T ss_pred ------------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcE
Confidence 2223344333322 0111 1133456889988532 47899999 9997
Q ss_pred cc-ccCCCCHH
Q 005738 357 QI-TIDKPDIK 366 (680)
Q Consensus 357 ~I-~v~~Pd~~ 366 (680)
++ -++.||..
T Consensus 606 IylllD~~DE~ 616 (804)
T KOG0478|consen 606 IFLLLDKPDER 616 (804)
T ss_pred EEEEecCcchh
Confidence 65 45677765
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.20 E-value=4.5e-06 Score=91.13 Aligned_cols=138 Identities=22% Similarity=0.311 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-CeEEeechhhhhh-------hccCchhHHHHHHHHHHhcCCeEEEEcCc
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGV-PFLSMSGSDFMEM-------FVGVGPSRVRSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~-~~i~is~s~~~~~-------~~g~~~~~vr~lf~~A~~~~P~ILfIDEi 293 (680)
...|+|++|+||+|+|||+|.-.+...+.. .-..+...+|+.. +.+. ..-+..+-+.... ...+|++||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHh-cCCEEEEeee
Confidence 457999999999999999999999987744 1122222233211 1111 1122222222222 3359999998
Q ss_pred chhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHH
Q 005738 294 DAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQ 373 (680)
Q Consensus 294 D~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~ 373 (680)
+.- +-.-.-.+..|+..+ -..++++|+|+|++- ..|. ++.+.+...+| -.++|+
T Consensus 137 ~V~------------DiaDAmil~rLf~~l----~~~gvvlVaTSN~~P---~~Ly-~~gl~r~~Flp------~I~~l~ 190 (362)
T PF03969_consen 137 QVT------------DIADAMILKRLFEAL----FKRGVVLVATSNRPP---EDLY-KNGLQRERFLP------FIDLLK 190 (362)
T ss_pred ecc------------chhHHHHHHHHHHHH----HHCCCEEEecCCCCh---HHHc-CCcccHHHHHH------HHHHHH
Confidence 543 111223556666655 246799999999641 1222 23444433333 256788
Q ss_pred HHhhcccCCCCcch
Q 005738 374 IYLKKLKLDNEPSF 387 (680)
Q Consensus 374 ~~l~~~~l~~~~d~ 387 (680)
.++.-+.++...|.
T Consensus 191 ~~~~vv~ld~~~Dy 204 (362)
T PF03969_consen 191 RRCDVVELDGGVDY 204 (362)
T ss_pred hceEEEEecCCCch
Confidence 88888887777665
No 254
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.19 E-value=3.9e-05 Score=78.44 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=111.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCC---CeEEeec-----hhhhhhhc----cCc--------hhHHHHHHHHHH-hcCCe
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGV---PFLSMSG-----SDFMEMFV----GVG--------PSRVRSLFQEAR-QCAPS 286 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~---~~i~is~-----s~~~~~~~----g~~--------~~~vr~lf~~A~-~~~P~ 286 (680)
+.++|+-|||||.++|++....+- -.++++. +.+.+.++ +.. ++.-+.+.+..+ ...|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 578999999999999987776532 2233432 22222221 111 112223333333 34578
Q ss_pred EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCch--------hhcCCCcccccc
Q 005738 287 IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDK--------ALLRPGRFDRQI 358 (680)
Q Consensus 287 ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~--------aLlRpgRfd~~I 358 (680)
++++||.+.+... .-..+.-|.+.-++....-+|+.++-.. |.+ .+.+ |++-.|
T Consensus 134 ~l~vdEah~L~~~------------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~--R~~ir~ 195 (269)
T COG3267 134 VLMVDEAHDLNDS------------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQ--RIDIRI 195 (269)
T ss_pred EEeehhHhhhChh------------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhh--eEEEEE
Confidence 9999999988321 1122222222222233334456655432 222 2333 787778
Q ss_pred ccCCCCHHHHHHHHHHHhhcccCCCCc--chhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 005738 359 TIDKPDIKGRDQIFQIYLKKLKLDNEP--SFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFE 429 (680)
Q Consensus 359 ~v~~Pd~~eR~~Il~~~l~~~~l~~~~--d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~ 429 (680)
.+++.+.++-...++.+++.-..+... +..+..+...+.| .|+-+.++|..|...|...++..|+...+.
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 899999998999999999876444332 3334667778888 567899999999888888888888776543
No 255
>PF05729 NACHT: NACHT domain
Probab=98.18 E-value=1.7e-05 Score=75.54 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=72.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc------C--CC-eEEeechhhhhh------------hccCchhHHHHHH-HHHHhcC
Q 005738 227 GALLVGPPGTGKTLLAKATAGES------G--VP-FLSMSGSDFMEM------------FVGVGPSRVRSLF-QEARQCA 284 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~------~--~~-~i~is~s~~~~~------------~~g~~~~~vr~lf-~~A~~~~ 284 (680)
-++|+|+||+|||++++.++..+ + .+ ++.+++.+.... ............+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47899999999999999999765 1 12 223333332211 0111111122212 2233455
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCC
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPD 364 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd 364 (680)
+.+|+||.+|.+...... .........+.+++.. ...++..++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 679999999999542210 0001122233334332 01122233333322222122222222 1457888889
Q ss_pred HHHHHHHHHHHhhc
Q 005738 365 IKGRDQIFQIYLKK 378 (680)
Q Consensus 365 ~~eR~~Il~~~l~~ 378 (680)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988764
No 256
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.16 E-value=6e-06 Score=95.64 Aligned_cols=190 Identities=24% Similarity=0.221 Sum_probs=108.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEE-eechhhhhhhccCchhHHHHHH--H---HH---HhcCCeEEEEcCcchh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLS-MSGSDFMEMFVGVGPSRVRSLF--Q---EA---RQCAPSIVFIDEIDAI 296 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~-is~s~~~~~~~g~~~~~vr~lf--~---~A---~~~~P~ILfIDEiD~L 296 (680)
-++||.|.||||||.|.+.+++-+-..++. -.++.- +|.++.-+++-+ + +| -...++|++|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 469999999999999999999877443322 112211 222222222222 0 01 1124589999999987
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCCeEEEeccCCCC-------------CCchhhcCCC
Q 005738 297 GRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TTAGVVVLAGTNRPD-------------ILDKALLRPG 352 (680)
Q Consensus 297 ~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~~~ViVIaaTN~~~-------------~LD~aLlRpg 352 (680)
-. ...+.+.+.|+... -+.+.-|+||+|... .|++.|++
T Consensus 396 ~~---------------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS-- 458 (682)
T COG1241 396 NE---------------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS-- 458 (682)
T ss_pred Ch---------------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--
Confidence 21 12344444454321 123456888998653 47889999
Q ss_pred ccccccccC-CCCHHHHHH----HHHHHhhccc------------------------------CCCC-cchhHHHHHh--
Q 005738 353 RFDRQITID-KPDIKGRDQ----IFQIYLKKLK------------------------------LDNE-PSFYSQRLAA-- 394 (680)
Q Consensus 353 Rfd~~I~v~-~Pd~~eR~~----Il~~~l~~~~------------------------------l~~~-~d~~l~~la~-- 394 (680)
|||..+.+. .|+.+.-+. |+..|..... ..+. .+...+.|..
T Consensus 459 RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Y 538 (682)
T COG1241 459 RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYY 538 (682)
T ss_pred hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHH
Confidence 999766554 666643333 3333421000 0000 0100111110
Q ss_pred -------------hCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 005738 395 -------------LTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 395 -------------~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
.+...+.++|+.+++-|-..|..+-+..|+.+|+.+|++-+.
T Consensus 539 v~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 539 VEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 112356788888888887777777888889999988886543
No 257
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=2.1e-05 Score=98.36 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=102.7
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe---EEeech-----
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF---LSMSGS----- 259 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~---i~is~s----- 259 (680)
...+++++|.++..+++..++.. +....+-+-|+||+|+||||||+++++....+| +.++..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 34688999999998888877642 122235688999999999999999988764432 111110
Q ss_pred --hh------------------hhhhccCc---hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHH
Q 005738 260 --DF------------------MEMFVGVG---PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTL 316 (680)
Q Consensus 260 --~~------------------~~~~~g~~---~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l 316 (680)
.+ .....+.. ...+ ...++.....+.+|++|++|.. ..+
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 00 00000000 0000 1122223345679999998643 233
Q ss_pred HHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCC-CcchhHHHHHhh
Q 005738 317 NQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDN-EPSFYSQRLAAL 395 (680)
Q Consensus 317 ~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-~~d~~l~~la~~ 395 (680)
..+....+.+. .+..||.||+.. .+++....++.+.++.|+.++..++|..++-+..... ........++..
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 44433333332 233455566643 3333335678899999999999999988775432221 111223557777
Q ss_pred CCCCCHH
Q 005738 396 TPGFAGA 402 (680)
Q Consensus 396 t~G~sga 402 (680)
+.|..-|
T Consensus 385 c~GLPLA 391 (1153)
T PLN03210 385 AGNLPLG 391 (1153)
T ss_pred hCCCcHH
Confidence 7776643
No 258
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2e-05 Score=83.23 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec--------hhhhhhh-cc----CchhHHHHHHHHHHhc----C
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSG--------SDFMEMF-VG----VGPSRVRSLFQEARQC----A 284 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~--------s~~~~~~-~g----~~~~~vr~lf~~A~~~----~ 284 (680)
.+.|+..||+||+|+||+.+|.++|..+-+.--.-+| .|+.-.+ .+ .+-..+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4678999999999999999999999977442100011 1111000 01 1234567666665432 2
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCC
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 363 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~P 363 (680)
..|++||++|.+. ....|.||+.++. +..++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt---------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMT---------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcC---------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3599999999982 2456788888876 66778888888889999999998 77 45666554
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.10 E-value=2.7e-06 Score=92.06 Aligned_cols=219 Identities=22% Similarity=0.229 Sum_probs=109.6
Q ss_pred ccccchHHHHHHHHHHHHhcChhhH--hhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh-----hhhhh
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKY--EELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD-----FMEMF 265 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~--~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~-----~~~~~ 265 (680)
+|.|.+.+|..+.= ..+...... .....+-.-++||+|.||||||.|.+.++.-+.. -+++++.. +....
T Consensus 25 ~i~g~~~iK~aill--~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILL--QLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCC--CCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHH--HHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCcccee
Confidence 56788877765521 111111100 0011233457999999999999999988755432 23333322 11000
Q ss_pred c---cCchhHHH-HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCC
Q 005738 266 V---GVGPSRVR-SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TTA 330 (680)
Q Consensus 266 ~---g~~~~~vr-~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~~ 330 (680)
. ..++-.+. ..+-.| ..+|++|||+|.+-. .....|++.|+.-. -+.
T Consensus 102 ~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~---------------~~~~~l~eaMEqq~isi~kagi~~~l~a 163 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKE---------------DDRDALHEAMEQQTISIAKAGIVTTLNA 163 (331)
T ss_dssp CCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--C---------------HHHHHHHHHHHCSCEEECTSSSEEEEE-
T ss_pred ccccccceeEEeCCchhcc---cCceeeecccccccc---------------hHHHHHHHHHHcCeeccchhhhcccccc
Confidence 0 00100000 122233 238999999998821 23455555565421 134
Q ss_pred CeEEEeccCCCC-------------CCchhhcCCCcccccccc-CCCCHHHHHHHHHHHhhcccCCC-------------
Q 005738 331 GVVVLAGTNRPD-------------ILDKALLRPGRFDRQITI-DKPDIKGRDQIFQIYLKKLKLDN------------- 383 (680)
Q Consensus 331 ~ViVIaaTN~~~-------------~LD~aLlRpgRfd~~I~v-~~Pd~~eR~~Il~~~l~~~~l~~------------- 383 (680)
+.-|+|++|... .+++.|++ |||..+.+ +.|+.+.-..+.++.++......
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKP 241 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-T
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCc
Confidence 578999998654 47889999 99988665 57776555555554443221110
Q ss_pred -Ccch-------------------hHHHHHh-------------hCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q 005738 384 -EPSF-------------------YSQRLAA-------------LTPGFAGADIANVCNEAALIAARNESAQITMQHFEA 430 (680)
Q Consensus 384 -~~d~-------------------~l~~la~-------------~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~ 430 (680)
+.+. ..+.|.. .....+.+.|+.+++-|...|..+-+..|+.+|+..
T Consensus 242 ~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~ 321 (331)
T PF00493_consen 242 ISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE 321 (331)
T ss_dssp T-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred cCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence 0000 0011110 012345677888888888888888889999999999
Q ss_pred HHHH
Q 005738 431 AIDR 434 (680)
Q Consensus 431 Al~~ 434 (680)
|+.-
T Consensus 322 Ai~L 325 (331)
T PF00493_consen 322 AIRL 325 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 260
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.07 E-value=1.5e-05 Score=80.16 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh-----hh---h----ccC-------c----hhHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM-----EM---F----VGV-------G----PSRVRSLF 277 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~-----~~---~----~g~-------~----~~~vr~lf 277 (680)
...-++|+||||||||+++..++... +.+.++++..++. .. + .+. . ...+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 33448899999999999999988644 6677888775421 10 0 000 0 01133334
Q ss_pred HHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 278 QEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 278 ~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
..+....|++|+||-+.++...... .....+.+.+..++..|..+....++.++.+..
T Consensus 91 ~~~~~~~~~lvVIDSis~l~~~~~~----~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTALYRLELS----DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHhhcCccEEEEeCcHHHhHHHhC----CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4445557899999999998643211 111122233333333343333456677777654
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.07 E-value=6.6e-05 Score=78.82 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh--cCCC---eEEeechh------hhhh---hccC---------chhHHHHHHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE--SGVP---FLSMSGSD------FMEM---FVGV---------GPSRVRSLFQEAR 281 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e--~~~~---~i~is~s~------~~~~---~~g~---------~~~~vr~lf~~A~ 281 (680)
.+-+.|+|++|+|||+||+.++.. .... .+.++.+. +... .++. ........+....
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 466889999999999999999987 3322 22333221 1111 1111 1223344444555
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccC
Q 005738 282 QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITID 361 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~ 361 (680)
...+++|++|+++... .+..+...+.. ...+..||.||...... .... .-+..+.++
T Consensus 99 ~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~~~~kilvTTR~~~v~-~~~~---~~~~~~~l~ 155 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE-----------------DLEELREPLPS--FSSGSKILVTTRDRSVA-GSLG---GTDKVIELE 155 (287)
T ss_dssp CCTSEEEEEEEE-SHH-----------------HH-------HC--HHSS-EEEEEESCGGGG-TTHH---SCEEEEECS
T ss_pred ccccceeeeeeecccc-----------------ccccccccccc--ccccccccccccccccc-cccc---ccccccccc
Confidence 5568999999986551 22222222211 12345566677654321 1111 114678899
Q ss_pred CCCHHHHHHHHHHHhhccc--CCCCcchhHHHHHhhCCCCCHHHHHHH
Q 005738 362 KPDIKGRDQIFQIYLKKLK--LDNEPSFYSQRLAALTPGFAGADIANV 407 (680)
Q Consensus 362 ~Pd~~eR~~Il~~~l~~~~--l~~~~d~~l~~la~~t~G~sgadL~~l 407 (680)
..+.++-.++|+.+..... .....+.....|+..+.|.. -.|..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~ 202 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP-LALKLI 202 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H-HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 9999999999998876544 11222333578888887744 334443
No 262
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.03 E-value=5.3e-05 Score=85.44 Aligned_cols=223 Identities=19% Similarity=0.193 Sum_probs=120.7
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhh--hcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccC
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEE--LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGV 268 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~--~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~ 268 (680)
|-.|-|.+.+|.-+. +..+-.-.++.. ..++-.-+|+|+|.||||||-+.+++++-+-..++ +++..- .-.|.
T Consensus 344 ~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaS--SaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKAS--SAAGL 418 (764)
T ss_pred CccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccc--ccccc
Confidence 455677777776653 222322222222 12333456999999999999999999986644332 332110 00111
Q ss_pred chhHHHH--HHHHHH------hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---C--------C
Q 005738 269 GPSRVRS--LFQEAR------QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---T--------T 329 (680)
Q Consensus 269 ~~~~vr~--lf~~A~------~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---~--------~ 329 (680)
+.+-+++ -++.+. -...+|..|||+|.+..+. -..+++.|+.-. . +
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d---------------qvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD---------------QVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHh---------------HHHHHHHHHhheehheecceEEeec
Confidence 1111111 000000 1124799999999983211 123444444311 1 2
Q ss_pred CCeEEEeccCCCC-------------CCchhhcCCCcccccc-ccCCCCHHHHHHHHHHHhhccc-CCCCcc--------
Q 005738 330 AGVVVLAGTNRPD-------------ILDKALLRPGRFDRQI-TIDKPDIKGRDQIFQIYLKKLK-LDNEPS-------- 386 (680)
Q Consensus 330 ~~ViVIaaTN~~~-------------~LD~aLlRpgRfd~~I-~v~~Pd~~eR~~Il~~~l~~~~-l~~~~d-------- 386 (680)
.+.-||||+|+.. .+++++++ |||..+ -++.|+...-..|-++.+.... ++....
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 2345788888643 46889999 999644 5677777655554444432211 000000
Q ss_pred ------------------hhHHHH---------------HhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 005738 387 ------------------FYSQRL---------------AALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAID 433 (680)
Q Consensus 387 ------------------~~l~~l---------------a~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~ 433 (680)
...+.| .+-+.+.+-++|+.|++-+-.+|.-+-+..||.+|+++|.+
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 000001 01122566788999988777777767778899999988886
Q ss_pred HH
Q 005738 434 RV 435 (680)
Q Consensus 434 ~v 435 (680)
-.
T Consensus 642 Ll 643 (764)
T KOG0480|consen 642 LL 643 (764)
T ss_pred HH
Confidence 43
No 263
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00014 Score=77.08 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeE-------E-eec--------hhhhhhhc-c--CchhHHHHHHHHHHh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-------S-MSG--------SDFMEMFV-G--VGPSRVRSLFQEARQ 282 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i-------~-is~--------s~~~~~~~-g--~~~~~vr~lf~~A~~ 282 (680)
.++|++.||+|| +||+++|+++|..+-+.-- . -+| .|+..... | .+-..+|++...+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 467889999996 6899999999986633210 0 011 11110000 1 123567777666543
Q ss_pred c----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCcccccc
Q 005738 283 C----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQI 358 (680)
Q Consensus 283 ~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I 358 (680)
. ...|++||++|.+. ....|.||+.++. +..++++|..|+.++.+-|.+++ |+ ..+
T Consensus 99 ~p~~~~~kV~II~~ad~m~---------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMH---------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eee
Confidence 2 23699999999982 2467888888887 55667888888889999999999 88 667
Q ss_pred ccCCCCHHHHHHHHH
Q 005738 359 TIDKPDIKGRDQIFQ 373 (680)
Q Consensus 359 ~v~~Pd~~eR~~Il~ 373 (680)
.|+. +.+...+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7865 4454444443
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.00 E-value=1.6e-05 Score=71.66 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 005738 228 ALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~ 250 (680)
|+|+||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988663
No 265
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=3.3e-05 Score=80.06 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeech--------------hhhhhhc---cCchhHHHHHHHHHHh---
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGS--------------DFMEMFV---GVGPSRVRSLFQEARQ--- 282 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s--------------~~~~~~~---g~~~~~vr~lf~~A~~--- 282 (680)
.+|+..||+||+|+||..+|.++|..+-+.--.-.|. |+.-.+. .-+...+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4578999999999999999999998663211000111 1110010 1233456666554432
Q ss_pred --cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCcccccccc
Q 005738 283 --CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITI 360 (680)
Q Consensus 283 --~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v 360 (680)
....|++|+++|.+. ....|.||..++. +..++++|..|+.++.+-|.+++ |+. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~---------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN---------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhC---------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 124699999999982 3467888888887 67788888899999999999999 873 4566
Q ss_pred CCC
Q 005738 361 DKP 363 (680)
Q Consensus 361 ~~P 363 (680)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 655
No 266
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00012 Score=77.86 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------C--eEEee--chhhhhhhccCchhHHHHHHHHHHhc----
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGV-----------P--FLSMS--GSDFMEMFVGVGPSRVRSLFQEARQC---- 283 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~-----------~--~i~is--~s~~~~~~~g~~~~~vr~lf~~A~~~---- 283 (680)
+.++..||+|+.|.||+.+|++++..+-+ | ++.++ +.. .+-..++.+.+.....
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCccc
Confidence 45678899999999999999999987622 1 22222 110 1234566666555322
Q ss_pred -CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCC
Q 005738 284 -APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDK 362 (680)
Q Consensus 284 -~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~ 362 (680)
...|++||++|.+. .+..|.||..++. ++..+++|..|+.++.|-|.+++ |+ ..+.+.+
T Consensus 89 ~~~KvvII~~~e~m~---------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~ 148 (299)
T PRK07132 89 SQKKILIIKNIEKTS---------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKE 148 (299)
T ss_pred CCceEEEEecccccC---------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCC
Confidence 44699999998772 2356778888877 45666777677778889999988 77 6789999
Q ss_pred CCHHHHHHHHHH
Q 005738 363 PDIKGRDQIFQI 374 (680)
Q Consensus 363 Pd~~eR~~Il~~ 374 (680)
|+.++..+.+..
T Consensus 149 l~~~~l~~~l~~ 160 (299)
T PRK07132 149 PDQQKILAKLLS 160 (299)
T ss_pred CCHHHHHHHHHH
Confidence 987777666553
No 267
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.92 E-value=8e-05 Score=73.04 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=58.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh----h--ccC-----------------------chhH---
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM----F--VGV-----------------------GPSR--- 272 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~----~--~g~-----------------------~~~~--- 272 (680)
+|++||||||||+|+..++.+. |.++++++..+-.+. . .|. +...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887644 667777765321110 0 010 0111
Q ss_pred --HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 273 --VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 273 --vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
+..+...+....|.+|+||++..+... ........+..++..+.. .++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 233444445678999999999887431 112233444555555432 245555556543
No 268
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.85 E-value=3.6e-05 Score=74.99 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---eEEeechhh
Q 005738 194 VAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSMSGSDF 261 (680)
Q Consensus 194 v~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~---~i~is~s~~ 261 (680)
++|-++..+++...+.. . ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46777777777776642 1 12235889999999999999999988766322 666666554
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.80 E-value=5.3e-05 Score=73.45 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=65.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhh--------hhhhcc-----CchhHHHHHHHHHHhcCCeEEEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSDF--------MEMFVG-----VGPSRVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~~--------~~~~~g-----~~~~~vr~lf~~A~~~~P~ILfI 290 (680)
.-+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+.+-.+..|....|.++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45889999999999999999986521 1122222111 111111 12234466788888889999999
Q ss_pred cCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 291 DEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 291 DEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
||- +++.+....+.+.+++.++.. + +..+|.+|++++.
T Consensus 107 DEP-----------~~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~ 144 (163)
T cd03216 107 DEP-----------TAALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLDE 144 (163)
T ss_pred ECC-----------CcCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 995 345566667777777776631 2 4456666776543
No 270
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.78 E-value=0.00011 Score=78.44 Aligned_cols=164 Identities=19% Similarity=0.212 Sum_probs=93.6
Q ss_pred ccchHHHHHHHHHHHHhcChhhH----hhhc---CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-EEeechhhhhh--
Q 005738 195 AGCDEAKQEIMEFVHFLKNPKKY----EELG---AKIPKGALLVGPPGTGKTLLAKATAGESGVPF-LSMSGSDFMEM-- 264 (680)
Q Consensus 195 ~G~~~~k~~L~e~v~~l~~~~~~----~~~g---~~~p~gvLL~GppGtGKT~LAralA~e~~~~~-i~is~s~~~~~-- 264 (680)
.-+..+.+.|.++.+.+..+..- ..+. ..+|+|++|+|+-|.|||+|.-.....+..+- ..+....|+-.
T Consensus 28 ~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH 107 (367)
T COG1485 28 PAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVH 107 (367)
T ss_pred hHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHH
Confidence 34556667777776644333221 1233 34789999999999999999999988774432 22222233211
Q ss_pred -----hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 265 -----FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 265 -----~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
..|.. .-+..+-.+.. ....+|+|||+.-= +-.-.-++..|+.+|= ..+|++++|+|
T Consensus 108 ~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~Vt------------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN 169 (367)
T COG1485 108 QRLHTLQGQT-DPLPPIADELA-AETRVLCFDEFEVT------------DIADAMILGRLLEALF----ARGVVLVATSN 169 (367)
T ss_pred HHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeeeeec------------ChHHHHHHHHHHHHHH----HCCcEEEEeCC
Confidence 22332 11111111111 12359999997431 1111235666666652 35899999999
Q ss_pred C-CCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcch
Q 005738 340 R-PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSF 387 (680)
Q Consensus 340 ~-~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~ 387 (680)
. |+.|- +++|.+.-.+| -.++++.++.-+.++...|.
T Consensus 170 ~~P~~LY-----~dGlqR~~FLP------~I~li~~~~~v~~vD~~~DY 207 (367)
T COG1485 170 TAPDNLY-----KDGLQRERFLP------AIDLIKSHFEVVNVDGPVDY 207 (367)
T ss_pred CChHHhc-----ccchhHHhhHH------HHHHHHHheEEEEecCCccc
Confidence 5 34332 23454444443 25788899888887777665
No 271
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=6.3e-05 Score=77.69 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+.-|-++++|....|.++++||= +.+-+...+..+..||.++.. . +..|+..|+..+.
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP-----------~~gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~ 201 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEP-----------FTGVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCC-----------cccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHH
Confidence 44577888899999999999993 556677788889999888753 3 7788888886654
No 272
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.76 E-value=9.4e-05 Score=75.28 Aligned_cols=73 Identities=26% Similarity=0.253 Sum_probs=42.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh-hhhh---------hccCchhHHHHHHHHHH--hcCCeEEEEc
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD-FMEM---------FVGVGPSRVRSLFQEAR--QCAPSIVFID 291 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~-~~~~---------~~g~~~~~vr~lf~~A~--~~~P~ILfID 291 (680)
.|.-+||||+||+|||++|+.+++. ..++..+.+. .... -.......+.+.+..+. .....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3677999999999999999999742 2223332211 0000 00111123333333332 2345799999
Q ss_pred Ccchhhh
Q 005738 292 EIDAIGR 298 (680)
Q Consensus 292 EiD~L~~ 298 (680)
.|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999865
No 273
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.74 E-value=6.7e-05 Score=82.58 Aligned_cols=165 Identities=23% Similarity=0.280 Sum_probs=90.0
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHh--hhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee-chhhhhhhccCc
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYE--ELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS-GSDFMEMFVGVG 269 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~--~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is-~s~~~~~~~g~~ 269 (680)
+|.|++++|+.|.=++-- .+.+-. .+.++-.-+|+|.|.||+-||-|.+.+.+-+-...+..- +|+ -+|.+
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 578999999998655432 222211 222333456999999999999999999987754444331 222 12333
Q ss_pred hhHHHHHHHH-------HH-hcCCeEEEEcCcchhhhhcCCCCCCCCChHHH-HHHHHHHHhhcCCC--CCCCeEEEecc
Q 005738 270 PSRVRSLFQE-------AR-QCAPSIVFIDEIDAIGRARGRGGFSGGNDERE-STLNQLLVEMDGFG--TTAGVVVLAGT 338 (680)
Q Consensus 270 ~~~vr~lf~~-------A~-~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~-~~l~~LL~~md~~~--~~~~ViVIaaT 338 (680)
++-+++-..- |. -...+|.+|||+|.+..... ..-++-.+ |++.-- -.|+. -+.+.-|+||.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR----tAIHEVMEQQTISIa---KAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR----TAIHEVMEQQTISIA---KAGINTTLNARTSILAAA 489 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh----HHHHHHHHhhhhhhh---hhccccchhhhHHhhhhc
Confidence 3322221100 00 01236999999999843210 01111111 111111 01111 13446788888
Q ss_pred CCCC-------------CCchhhcCCCcccccccc-CCCCHHHHHHHH
Q 005738 339 NRPD-------------ILDKALLRPGRFDRQITI-DKPDIKGRDQIF 372 (680)
Q Consensus 339 N~~~-------------~LD~aLlRpgRfd~~I~v-~~Pd~~eR~~Il 372 (680)
|... .|+.||++ |||..+-+ +.||.+.-..+-
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA 535 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLA 535 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHH
Confidence 8532 57999999 99976654 477765444333
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.74 E-value=0.00015 Score=77.89 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-------------hc---cCchhHHHHHHHHHHhcCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-------------FV---GVGPSRVRSLFQEARQCAP 285 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-------------~~---g~~~~~vr~lf~~A~~~~P 285 (680)
-+-+.++||||||||+||..++.++ +.+.++++...-.+. ++ ...+..+..+-..++...+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 3447899999999999999887544 667777766331110 11 1112222223233355678
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGN--DERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~--~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
++|+||-+-++.++..-.+..+.. ....+.+.+.+..+.......++.+|.+.
T Consensus 135 ~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 135 DLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred CEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 999999999997642211111111 11223455555555444455667777653
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.74 E-value=0.00015 Score=77.76 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh----hcc------------CchhHHHHHHHHHHh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM----FVG------------VGPSRVRSLFQEARQ 282 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~----~~g------------~~~~~vr~lf~~A~~ 282 (680)
.+.-.-++|+||||||||+||..++.++ +.+.++++.....+. ..| ..+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3333458899999999999988776544 667777765432211 011 112223333333455
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 283 CAPSIVFIDEIDAIGRARGRGGFSGGN--DERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 283 ~~P~ILfIDEiD~L~~~r~~~~~~~~~--~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
..+++|+||-+.++.++..-.+..+.+ ....+.+++++..+...-...++.+|.+..
T Consensus 132 ~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 678999999999997643211111111 122234556666555554566777777643
No 276
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.74 E-value=0.0001 Score=75.00 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
++-|-++++|..+.|.||+-||= ++..+......+..++..+. ...+..||..|+. +.+..
T Consensus 147 qqQRVAIARAL~~~P~iilADEP-----------TgnLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd-----~~lA~ 207 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEP-----------TGNLDSKTAKEVLELLRELN---KERGKTIIMVTHD-----PELAK 207 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCc-----------cccCChHHHHHHHHHHHHHH---HhcCCEEEEEcCC-----HHHHH
Confidence 34577788888899999999992 44456666666777776653 2345577777884 44544
Q ss_pred CCccccccccC
Q 005738 351 PGRFDRQITID 361 (680)
Q Consensus 351 pgRfd~~I~v~ 361 (680)
++||+|.+.
T Consensus 208 --~~dr~i~l~ 216 (226)
T COG1136 208 --YADRVIELK 216 (226)
T ss_pred --hCCEEEEEe
Confidence 677777654
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00011 Score=70.20 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.+.-+.++|+||+||||++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 278
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.72 E-value=0.00014 Score=73.94 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=63.4
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh----hhhhccC---------------c----hhHHH
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF----MEMFVGV---------------G----PSRVR 274 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~----~~~~~g~---------------~----~~~vr 274 (680)
|++...-++|+||||+|||++|..+|.+. +.+.++++...+ +....+. . ...++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 34444458899999999999999998744 677788877622 1111110 0 00112
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 275 SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 275 ~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
.+..... ..+++|+||-+.++....-.+ ...+....+.+.+++..+-.+....++.|+.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~--~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED--EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2211112 578999999999986542100 0112223334444443333333345667776544
No 279
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=6.3e-05 Score=73.41 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=30.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
-|+++||||+||||+|+.|+..++.|++.++.--
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~ 36 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF 36 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 5899999999999999999999999999887543
No 280
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.71 E-value=0.0006 Score=75.15 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r 300 (680)
..++++.||+|||||+++.+++... | -.++.+.++.... . ..+. .-...++|+|||+..+.-.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg--~v~~~DlLI~DEvgylp~~- 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIG--LVGRWDVVAFDEVATLKFA- 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHh--hhccCCEEEEEcCCCCcCC-
Confidence 4689999999999999999988762 3 2233333332110 0 1111 1234589999999775211
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCC---------CCCCCeEEEeccCCCC-----------CC-----chhhcCCCccc
Q 005738 301 GRGGFSGGNDERESTLNQLLVEMDGF---------GTTAGVVVLAGTNRPD-----------IL-----DKALLRPGRFD 355 (680)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~LL~~md~~---------~~~~~ViVIaaTN~~~-----------~L-----D~aLlRpgRfd 355 (680)
.. ...+..|...|..- ....++++++-+|.+. .| |.|++. ||.
T Consensus 276 -------~~---~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflD--RiH 343 (449)
T TIGR02688 276 -------KP---KELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLD--RIH 343 (449)
T ss_pred -------ch---HHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHH--hhh
Confidence 11 12334444444421 2234567777666321 12 445555 552
Q ss_pred c---ccccCCCCHHH-------HHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHH-HHHHHhcCCccc
Q 005738 356 R---QITIDKPDIKG-------RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAA-LIAARNESAQIT 424 (680)
Q Consensus 356 ~---~I~v~~Pd~~e-------R~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa-~~a~r~~~~~It 424 (680)
- -.++|.-..+- -.+.|...++.+.-. +-...++.......+.+.+|...+-+... +.-..--...++
T Consensus 344 ~yiPGWeipk~~~e~~t~~yGl~~DylsE~l~~lR~~-~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~ 422 (449)
T TIGR02688 344 GYLPGWEIPKIRKEMFSNGYGFVVDYFAEALRELRER-EYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTIT 422 (449)
T ss_pred ccCCCCcCccCCHHHcccCCcchHHHHHHHHHHHHhh-HHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCC
Confidence 1 11233222211 112222222222111 11111233444556778888877665432 222223345688
Q ss_pred HHHHHHHHHHHhc
Q 005738 425 MQHFEAAIDRVIG 437 (680)
Q Consensus 425 ~~d~~~Al~~v~~ 437 (680)
.+++++.++-.+.
T Consensus 423 ~ee~~~~l~~Ale 435 (449)
T TIGR02688 423 KEEFTECLEPALE 435 (449)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887755443
No 281
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.71 E-value=0.00015 Score=69.83 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-++|+||+|||||+|.|++|.-
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc
Confidence 34899999999999999999973
No 282
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.70 E-value=0.00021 Score=71.78 Aligned_cols=102 Identities=22% Similarity=0.391 Sum_probs=58.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh-----cCCCe-------------EEeechhhhhhhccC-----chhHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE-----SGVPF-------------LSMSGSDFMEMFVGV-----GPSRVRSLFQEARQ 282 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e-----~~~~~-------------i~is~s~~~~~~~g~-----~~~~vr~lf~~A~~ 282 (680)
+-++|+||+|+|||||+|.++.. .|.++ ..++..+- ...+. ...++..+++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~--l~~~~s~~~~e~~~~~~iL~~~~~ 103 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDD--LRDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhc--cccccChHHHHHHHHHHHHHhccC
Confidence 56899999999999999999863 34332 11111110 01111 11345666666655
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCChH-HHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 283 CAPSIVFIDEIDAIGRARGRGGFSGGNDE-RESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 283 ~~P~ILfIDEiD~L~~~r~~~~~~~~~~~-~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
..|.++++||.- ++.+.. .......++..+.. .+..+|.+|+.++.+
T Consensus 104 ~~p~llllDEp~-----------~glD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 104 GEPVLFLLDEIF-----------KGTNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCCeEEEEeccc-----------CCCCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 579999999962 222322 22334455655532 245677778876543
No 283
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.69 E-value=0.00011 Score=89.42 Aligned_cols=137 Identities=28% Similarity=0.351 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh--h-----ccC--chhHHHH-HHHHHHhcCCeEEEEcCc
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM--F-----VGV--GPSRVRS-LFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~--~-----~g~--~~~~vr~-lf~~A~~~~P~ILfIDEi 293 (680)
.-+++||.|.||+|||.|..|+|+..|-.++.++.|+-.+- . .++ |+-++++ -|-.|.+. ...+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 45789999999999999999999999999999998764321 1 122 2223333 24444443 369999998
Q ss_pred chhhhhcCCCCCCCCChHHHHHHHHHHHhhcC------------CCCCCCeEEEeccCCCC------CCchhhcCCCccc
Q 005738 294 DAIGRARGRGGFSGGNDERESTLNQLLVEMDG------------FGTTAGVVVLAGTNRPD------ILDKALLRPGRFD 355 (680)
Q Consensus 294 D~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~------------~~~~~~ViVIaaTN~~~------~LD~aLlRpgRfd 355 (680)
... .+.++..|-..+|. |...++..|+||-|..+ .|+..++. ||
T Consensus 1621 NLa---------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF- 1682 (4600)
T COG5271 1621 NLA---------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF- 1682 (4600)
T ss_pred hhh---------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-
Confidence 543 23344444333332 34467788999988654 58889998 99
Q ss_pred cccccCCCCHHHHHHHHHHHhhcc
Q 005738 356 RQITIDKPDIKGRDQIFQIYLKKL 379 (680)
Q Consensus 356 ~~I~v~~Pd~~eR~~Il~~~l~~~ 379 (680)
.++.++..+.++...|......++
T Consensus 1683 svV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1683 SVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred heEEecccccchHHHHHHhhCCcc
Confidence 567888777777777777665543
No 284
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.66 E-value=0.00024 Score=70.03 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=68.5
Q ss_pred cCCCCCe--EEEEcCCCChHHHHHHHHHHhcCC-------------CeEEeechhhhhhhc------c------CchhHH
Q 005738 221 GAKIPKG--ALLVGPPGTGKTLLAKATAGESGV-------------PFLSMSGSDFMEMFV------G------VGPSRV 273 (680)
Q Consensus 221 g~~~p~g--vLL~GppGtGKT~LAralA~e~~~-------------~~i~is~s~~~~~~~------g------~~~~~v 273 (680)
...++.| +.|.||+|+|||||.+++....|- ++.++...++...+- . .+..+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 3344444 779999999999999999743321 122222111222110 0 012345
Q ss_pred HHHHHHHHhcC--CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCC
Q 005738 274 RSLFQEARQCA--PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRP 351 (680)
Q Consensus 274 r~lf~~A~~~~--P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRp 351 (680)
|-.+..+.... |.++++||- +.+.+....+.+.+++..+. . .+..||.+|+.++.+ +
T Consensus 95 rl~laral~~~~~p~llLlDEP-----------t~~LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~- 153 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEP-----------STGLHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S- 153 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H-
Confidence 66677777888 999999995 23445555566666665542 1 245666677765432 3
Q ss_pred CccccccccC
Q 005738 352 GRFDRQITID 361 (680)
Q Consensus 352 gRfd~~I~v~ 361 (680)
..|+.+.+.
T Consensus 154 -~~d~i~~l~ 162 (176)
T cd03238 154 -SADWIIDFG 162 (176)
T ss_pred -hCCEEEEEC
Confidence 355555554
No 285
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.65 E-value=0.00012 Score=76.96 Aligned_cols=94 Identities=24% Similarity=0.413 Sum_probs=57.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC----------CeEEee-chhhhhhhc-------cC------chhHHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV----------PFLSMS-GSDFMEMFV-------GV------GPSRVRSLFQEAR 281 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~----------~~i~is-~s~~~~~~~-------g~------~~~~vr~lf~~A~ 281 (680)
++++|.||+|+|||||.+++++...- ++..++ ..++...+. |. +..+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999997632 222222 122221111 11 1122344666667
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 282 QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.+.|.+|++||+.. ...+..++..+. .+..||++|+.+
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~ 229 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGR 229 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechh
Confidence 78999999999621 123444544442 356788888864
No 286
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.65 E-value=0.00016 Score=70.97 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
+.|-.++.|.-+.|.+|+-||= ++..++....-+.++++++. ..+..|+.||+..+.++
T Consensus 143 QQRvaIARAiV~~P~vLlADEP-----------TGNLDp~~s~~im~lfeein----r~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEP-----------TGNLDPDLSWEIMRLFEEIN----RLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCC-----------CCCCChHHHHHHHHHHHHHh----hcCcEEEEEeccHHHHH
Confidence 3467788888899999999993 44556666677777877775 34567777887654443
No 287
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.63 E-value=0.00016 Score=73.53 Aligned_cols=58 Identities=26% Similarity=0.403 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+-|..+++|....|.+||+|| .+++.++-....+++|+..+.. .-+..+|..|+..+.
T Consensus 151 ~KRvaLARAialdPell~~DE-----------PtsGLDPI~a~~~~~LI~~L~~---~lg~T~i~VTHDl~s 208 (263)
T COG1127 151 RKRVALARAIALDPELLFLDE-----------PTSGLDPISAGVIDELIRELND---ALGLTVIMVTHDLDS 208 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecC-----------CCCCCCcchHHHHHHHHHHHHH---hhCCEEEEEECChHH
Confidence 346778888889999999999 3567777778888999888764 345566667775543
No 288
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.62 E-value=0.00015 Score=81.64 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhh------ccC--------chhHHHHHHHHHHhcC
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMF------VGV--------GPSRVRSLFQEARQCA 284 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~------~g~--------~~~~vr~lf~~A~~~~ 284 (680)
+....-++|+|+||+|||+|+..++... +.++++++..+-.+.. +|. .+..+..+++......
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 3344458899999999999999998765 6788888875533221 111 1234566777777778
Q ss_pred CeEEEEcCcchhhh
Q 005738 285 PSIVFIDEIDAIGR 298 (680)
Q Consensus 285 P~ILfIDEiD~L~~ 298 (680)
|.+|+||++..+..
T Consensus 157 ~~lVVIDSIq~l~~ 170 (446)
T PRK11823 157 PDLVVIDSIQTMYS 170 (446)
T ss_pred CCEEEEechhhhcc
Confidence 99999999998854
No 289
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.61 E-value=0.00014 Score=79.83 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh------hccC--------chhHHHHHHHHHHhcC
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM------FVGV--------GPSRVRSLFQEARQCA 284 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~------~~g~--------~~~~vr~lf~~A~~~~ 284 (680)
+....-++|+|+||+|||+|+..+|... +.+++++++.+-.+. .+|. .+..+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 3333458899999999999999998754 457888876432211 1111 1234566677777788
Q ss_pred CeEEEEcCcchhhh
Q 005738 285 PSIVFIDEIDAIGR 298 (680)
Q Consensus 285 P~ILfIDEiD~L~~ 298 (680)
|.+|+||+|..+..
T Consensus 159 ~~lVVIDSIq~l~~ 172 (372)
T cd01121 159 PDLVIIDSIQTVYS 172 (372)
T ss_pred CcEEEEcchHHhhc
Confidence 99999999999854
No 290
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.61 E-value=0.00016 Score=74.99 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
++-+-++++|....|.||++||= ++.-+-..+-.+.+++..+. ...+..||++++++
T Consensus 143 erQrv~iArALaQ~~~iLLLDEP-----------Ts~LDi~~Q~evl~ll~~l~---~~~~~tvv~vlHDl 199 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEP-----------TSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCC-----------ccccCHHHHHHHHHHHHHHH---HhcCCEEEEEecCH
Confidence 44567788888889999999994 23334444445556655553 34567788887754
No 291
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=4.8e-05 Score=69.29 Aligned_cols=30 Identities=47% Similarity=0.845 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
++|+|||||||||+|+.+|..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999998876554
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.58 E-value=0.00051 Score=70.56 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh----hhhhh--ccC----------------------c--
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD----FMEMF--VGV----------------------G-- 269 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~----~~~~~--~g~----------------------~-- 269 (680)
+...-++|+||||||||+++..++... |.+.++++..+ +.... +|. .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 334558999999999999975554432 56666666432 11110 000 0
Q ss_pred -hhHHHHHHHHHHhcCCeEEEEcCcchhh
Q 005738 270 -PSRVRSLFQEARQCAPSIVFIDEIDAIG 297 (680)
Q Consensus 270 -~~~vr~lf~~A~~~~P~ILfIDEiD~L~ 297 (680)
...+..+........|.+++|||+-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 1223344445555578999999998764
No 293
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.58 E-value=0.00023 Score=68.70 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
.+..++|+|+||||||++|+++|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4678999999999999999999999999988543
No 294
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.57 E-value=0.0026 Score=66.71 Aligned_cols=95 Identities=24% Similarity=0.281 Sum_probs=59.5
Q ss_pred ccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccC---
Q 005738 193 DVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGV--- 268 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~--- 268 (680)
.|.|+.-+++.+...+.. +.++. -+.|--+-|+|++||||.+.++.||+..-..- ..|.++..|+..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccC
Confidence 378888888888777765 44432 22345566899999999999999998651100 012222222211
Q ss_pred ---------chhHHHHHHHHHHhcCCeEEEEcCcchh
Q 005738 269 ---------GPSRVRSLFQEARQCAPSIVFIDEIDAI 296 (680)
Q Consensus 269 ---------~~~~vr~lf~~A~~~~P~ILfIDEiD~L 296 (680)
..+..+.+-..+..++.+|.++||+|.+
T Consensus 154 P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1111223444556777789999999998
No 295
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.57 E-value=0.00031 Score=66.73 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=59.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeech---hhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGS---DFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s---~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r 300 (680)
..+.|.||+|+|||||++++++..... -+.+++. .+... +..+ .+.+-.+..|....|.++++||-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G-~~~rv~laral~~~p~illlDEP------- 97 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGG-EKMRLALAKLLLENPNLLLLDEP------- 97 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHH-HHHHHHHHHHHhcCCCEEEEeCC-------
Confidence 457899999999999999999975210 1111111 00000 1122 33455677788889999999995
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 301 GRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+++.+......+.+++..+. ..+|.+|+.++.
T Consensus 98 ----~~~LD~~~~~~l~~~l~~~~-------~til~~th~~~~ 129 (144)
T cd03221 98 ----TNHLDLESIEALEEALKEYP-------GTVILVSHDRYF 129 (144)
T ss_pred ----ccCCCHHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 23445555556666665541 256667776543
No 296
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.56 E-value=0.00024 Score=69.42 Aligned_cols=101 Identities=28% Similarity=0.393 Sum_probs=62.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhh--------hhh--hc---------------cCchhHHHHHHHH
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSDF--------MEM--FV---------------GVGPSRVRSLFQE 279 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~~--------~~~--~~---------------g~~~~~vr~lf~~ 279 (680)
-+.|.||+|+|||+|++.+++.... --+.+++.++ ... |+ -.+..+.|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 4789999999999999999986421 0111221110 000 00 0112334667788
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 280 ARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 280 A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|....|.++++||- +.+.+......+.+++..+.. .+..+|.+|+..+
T Consensus 110 al~~~p~~lllDEP-----------t~~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEP-----------NSHLDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECC-----------ccccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 88889999999995 344566666677777766532 2446666777654
No 297
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.56 E-value=0.00042 Score=70.11 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----hhhccC-------------c------hhHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----EMFVGV-------------G------PSRVRSL 276 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----~~~~g~-------------~------~~~vr~l 276 (680)
....-++|+|+||||||+++..+|.+. +.+.++++..... ....+. . ...+..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQET 96 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHHH
Confidence 333448899999999999999998765 5677777653211 110000 0 0111222
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 277 FQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 277 f~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
..... ..+++|+||-+.++......+ ..........+..++..|..+....++.||.+.+.
T Consensus 97 ~~~~~-~~~~lvvIDsi~~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 97 ETFAD-EKVDLVVVDSATALYRLELGD--DDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHh-cCCcEEEEechHHhhhHHhcC--ccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 22222 247899999999885422111 00111222233343333333334556777776553
No 298
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.00058 Score=75.83 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=74.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFS 306 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~ 306 (680)
-++|+||.+|||||+++.+.+...-.+++++..+........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 789999999999999988888775556666665543221111 11222233333324479999999876
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHH
Q 005738 307 GGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 370 (680)
Q Consensus 307 ~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~ 370 (680)
+..+..+..+... .. ..+++.+++........+-.-+||. ..+.+.+.+..|...
T Consensus 107 ---~~W~~~lk~l~d~---~~--~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ---PDWERALKYLYDR---GN--LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---hhHHHHHHHHHcc---cc--ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2355566666532 11 1445544443333333343446895 677788888888754
No 299
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.55 E-value=0.00012 Score=83.13 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=47.2
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCCeEEeec
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSMSG 258 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-~~~~i~is~ 258 (680)
...|+|+.|++++++++.+.+..- ...++. ..+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~A-----a~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHA-----AQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHH-----HHhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 346999999999999998876321 011111 22468899999999999999999866 346666654
No 300
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00014 Score=72.77 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 270 PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 270 ~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
.++.|-.+++|..+.|.|+++||- +|+.+++...-+...+..+ ...+...|+.|+.
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEP-----------TSALDPElv~EVL~vm~~L----A~eGmTMivVTHE 195 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEP-----------TSALDPELVGEVLDVMKDL----AEEGMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCC-----------cccCCHHHHHHHHHHHHHH----HHcCCeEEEEech
Confidence 345677889999999999999995 5566777665555555554 2345566666664
No 301
>PHA00729 NTP-binding motif containing protein
Probab=97.54 E-value=0.00016 Score=73.73 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=23.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
..++|+|+||||||+||.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.53 E-value=0.00033 Score=70.23 Aligned_cols=67 Identities=21% Similarity=0.383 Sum_probs=43.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CeEEeec-hhhhh---------hhccCchhHHHHHHHHHHhcCCeEEEEcC
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGV----PFLSMSG-SDFME---------MFVGVGPSRVRSLFQEARQCAPSIVFIDE 292 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~----~~i~is~-s~~~~---------~~~g~~~~~vr~lf~~A~~~~P~ILfIDE 292 (680)
-++++||+|+||||+++++++.... .++.+.. .++.. .-+|.......+.++.+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3689999999999999999887742 2222211 11110 01122223456677778888999999999
Q ss_pred c
Q 005738 293 I 293 (680)
Q Consensus 293 i 293 (680)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 303
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=0.00017 Score=70.51 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=29.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
++|+|+||+||||||+.++...+.|++..+.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 7899999999999999999999999887765443
No 304
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.00025 Score=69.92 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=61.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechh--hhhh--hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSD--FMEM--FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRA 299 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~--~~~~--~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~ 299 (680)
.-+.|.||+|+|||||++.+++.... --+.+++.. +... .+. +..+.|-.+..+....|.++++||-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~~~p~lllLDEP------ 98 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALLRNATFYLFDEP------ 98 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHhcCCCEEEEECC------
Confidence 44789999999999999999986521 112222211 0001 022 2234466677788889999999995
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 300 RGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 300 r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+++.+....+.+..++..+. ...+..+|.+|+..+.
T Consensus 99 -----ts~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 134 (177)
T cd03222 99 -----SAYLDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAV 134 (177)
T ss_pred -----cccCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHH
Confidence 33445555555666665542 1222455666775543
No 305
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.50 E-value=8.8e-05 Score=74.01 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=58.9
Q ss_pred EEEEcCCCChHHHHHHHH-HHh---cCCCeEEeechhhh----hhhccCchh-------------HHHHHHHHHHhcCCe
Q 005738 228 ALLVGPPGTGKTLLAKAT-AGE---SGVPFLSMSGSDFM----EMFVGVGPS-------------RVRSLFQEARQCAPS 286 (680)
Q Consensus 228 vLL~GppGtGKT~LAral-A~e---~~~~~i~is~s~~~----~~~~g~~~~-------------~vr~lf~~A~~~~P~ 286 (680)
.+++|.||+|||+.|-.. ... .|.+++. +...+. ..+.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 478999999999988665 432 3666554 433121 111010000 001111111111468
Q ss_pred EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCC
Q 005738 287 IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 363 (680)
Q Consensus 287 ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~P 363 (680)
+|+|||++.+.+.+... .......+ +++... ...++-|+.+|..+..+|+.+++ +.+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998876431 01112333 333332 34568888899999999999987 77777766544
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.0003 Score=68.61 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=62.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhhh--------hh--h----------------ccCchhHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGSDFM--------EM--F----------------VGVGPSRVRSLF 277 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s~~~--------~~--~----------------~g~~~~~vr~lf 277 (680)
.-+.|.||+|+|||+|++.+++..... -+.+++.... .. | +.. ..+.|-.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~-G~~~rl~l 107 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSG-GQRQRIAI 107 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCH-HHHHHHHH
Confidence 458899999999999999999965210 1122221110 00 0 111 22334557
Q ss_pred HHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 278 QEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 278 ~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
..+....|.++++||- +.+.+......+.+++..+. . +..+|.+|+.++.+
T Consensus 108 a~al~~~p~llllDEP-----------~~gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 108 ARALLRDPPILILDEA-----------TSALDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHhcCCCEEEEECC-----------CcCCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 7777789999999994 33455555666777776653 1 25666778766544
No 307
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.50 E-value=0.00014 Score=85.76 Aligned_cols=69 Identities=29% Similarity=0.353 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhc
Q 005738 270 PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALL 349 (680)
Q Consensus 270 ~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLl 349 (680)
.++-|-++++|.-..|.||++||. +++-+.+.++.+.+-|.++.. +..+|..|+++.. +
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEa-----------TSaLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t-----i 671 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEA-----------TSALDPETEAIILQNLLQILQ-----GRTVIIIAHRLST-----I 671 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCc-----------ccccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH-----h
Confidence 355677888888899999999996 456677778877777777542 3466667787543 3
Q ss_pred CCCccccccccC
Q 005738 350 RPGRFDRQITID 361 (680)
Q Consensus 350 RpgRfd~~I~v~ 361 (680)
+ ++|+.+.+.
T Consensus 672 ~--~adrIiVl~ 681 (709)
T COG2274 672 R--SADRIIVLD 681 (709)
T ss_pred h--hccEEEEcc
Confidence 4 566666654
No 308
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.48 E-value=0.00021 Score=85.43 Aligned_cols=202 Identities=19% Similarity=0.251 Sum_probs=119.8
Q ss_pred cccccccchHHHHHHHHHHHHhcChh--hHhhhcCCCC-C-eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPK--KYEELGAKIP-K-GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~--~~~~~g~~~p-~-gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
...++.|....-..+.+.++..++++ .|...+.... + .++++||||+|||+.+.++|.+.|..++..|.++..+.+
T Consensus 318 ~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~ 397 (871)
T KOG1968|consen 318 SSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKK 397 (871)
T ss_pred cHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccccc
Confidence 44666776655555555555443321 2222211111 2 368999999999999999999999999999988765442
Q ss_pred c-----cC--chhHHHHHHH---HHH-hcCCe-EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeE
Q 005738 266 V-----GV--GPSRVRSLFQ---EAR-QCAPS-IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVV 333 (680)
Q Consensus 266 ~-----g~--~~~~vr~lf~---~A~-~~~P~-ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~Vi 333 (680)
. |. +...+...|. ... .+.+. ||++||+|.+.. . +...-..+.+++. ...+-
T Consensus 398 ~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~--------dRg~v~~l~~l~~-------ks~~P 461 (871)
T KOG1968|consen 398 ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E--------DRGGVSKLSSLCK-------KSSRP 461 (871)
T ss_pred HHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h--------hhhhHHHHHHHHH-------hccCC
Confidence 2 11 1122233330 000 01222 899999998854 1 1112234555554 23345
Q ss_pred EEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005738 334 VLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 334 VIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~ 413 (680)
+|+++|.-.......+. |-+.-++|+.|+...+..-+...+.......+.+. ++.+...+ ++||++.++.-..
T Consensus 462 iv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~-l~~~s~~~----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 462 LVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDV-LEEISKLS----GGDIRQIIMQLQF 534 (871)
T ss_pred eEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHH-HHHHHHhc----ccCHHHHHHHHhh
Confidence 67777765544432222 43456889999999888877777765554444332 46666655 5699888886554
Q ss_pred H
Q 005738 414 I 414 (680)
Q Consensus 414 ~ 414 (680)
.
T Consensus 535 ~ 535 (871)
T KOG1968|consen 535 W 535 (871)
T ss_pred h
Confidence 4
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00049 Score=75.37 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=61.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc----C-CCeEEeechhh-------h---hhhccCc------hhHHHHHHHHHHh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES----G-VPFLSMSGSDF-------M---EMFVGVG------PSRVRSLFQEARQ 282 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~----~-~~~i~is~s~~-------~---~~~~g~~------~~~vr~lf~~A~~ 282 (680)
....++|+||+|+||||++..+|..+ | ..+..+....+ . ....|.. ...+...+.. .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~--l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE--L 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--h
Confidence 34568999999999999999999764 3 23434443332 1 1111221 1122333322 2
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCCeEEEeccCCCCCCchhhc
Q 005738 283 CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-TTAGVVVLAGTNRPDILDKALL 349 (680)
Q Consensus 283 ~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-~~~~ViVIaaTN~~~~LD~aLl 349 (680)
...++|+||..... ..+ ..+...+..+.... ....++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~----------~~d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMS----------QRD----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCC----------ccc----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 34579999997322 112 23444444444432 2345788888888777765543
No 310
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.46 E-value=0.00038 Score=65.08 Aligned_cols=37 Identities=35% Similarity=0.589 Sum_probs=29.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhc
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFV 266 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~ 266 (680)
++++|||||||||+|+.+++..+ ...++...+.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 68999999999999999999988 44566666554443
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.45 E-value=0.00069 Score=65.86 Aligned_cols=99 Identities=33% Similarity=0.438 Sum_probs=60.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC-----------CeEEeech-hh-----hhhh----c--cCchhHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV-----------PFLSMSGS-DF-----MEMF----V--GVGPSRVRSLFQEARQ 282 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~-----------~~i~is~s-~~-----~~~~----~--g~~~~~vr~lf~~A~~ 282 (680)
.-+.|.||+|+|||||++.+++.... .+.++... .+ .+.. . -.+..+.|-.+..|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 44889999999999999999996521 01111110 00 0110 0 0122344667778888
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 283 CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 283 ~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
..|.++++||- +++.+......+.+++..+ +..+|.+|++++
T Consensus 108 ~~p~~lllDEP-----------t~~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEA-----------TSALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECC-----------ccccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 89999999995 3344556666677777654 135666777654
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.45 E-value=0.00048 Score=70.67 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=29.6
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
|++....++++|+||||||+|+..++.+. |.+.++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 45555668999999999999999997543 667766665
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.45 E-value=0.00069 Score=66.48 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=62.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhhh-------hh--h----------------c--cCchhHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSDFM-------EM--F----------------V--GVGPSRVRSL 276 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~~~-------~~--~----------------~--g~~~~~vr~l 276 (680)
.-+.|.||+|+|||||++++++.... --+.+++.+.. .. | . -.+..+.+-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 45889999999999999999986521 11222221110 00 0 0 0012344566
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 277 FQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 277 f~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+..|....|.++++||- +++.+......+.+++..+. + +..||.+|+.++.+
T Consensus 109 laral~~~p~~lllDEP-----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 109 LARILLQDAPIVLLDEP-----------TVGLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHhcCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 77788889999999995 33445566667777776652 2 34566667765543
No 314
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00052 Score=67.07 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=61.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechh-------hh----------hhhcc---------CchhHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSD-------FM----------EMFVG---------VGPSRVRSLF 277 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~-------~~----------~~~~g---------~~~~~vr~lf 277 (680)
.-+.|.||+|+|||||++.+++.... --+.+++.+ +. ..+.+ .+..+.|-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 34889999999999999999986411 001111100 00 00111 1123345567
Q ss_pred HHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 278 QEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 278 ~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
..|....|.++++||- +++.+......+.+++..+.. + +..+|.+|+.++
T Consensus 107 aral~~~p~illlDEP-----------t~~LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 107 AQALLHDPELLILDEP-----------TSGLDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 7888889999999995 334556666677777766532 2 345666677554
No 315
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.44 E-value=0.0013 Score=68.28 Aligned_cols=112 Identities=18% Similarity=0.307 Sum_probs=60.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC------eEEeec------hhhhhhh--------ccCc-hhHHH---HHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP------FLSMSG------SDFMEMF--------VGVG-PSRVR---SLFQEAR 281 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~------~i~is~------s~~~~~~--------~g~~-~~~vr---~lf~~A~ 281 (680)
.-++|.||+|+|||+|++.+++..... ++.+.. .+|.... .+.. ..+++ .+...|.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 348999999999999999999877442 333222 2233222 1211 12222 2333333
Q ss_pred ----hcCCeEEEEcCcchhhhhcC-------CCCCCCC-ChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 282 ----QCAPSIVFIDEIDAIGRARG-------RGGFSGG-NDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 282 ----~~~P~ILfIDEiD~L~~~r~-------~~~~~~~-~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
.....+|||||+..+..... ... +++ ....-..+-+++..--.+.....+.+++|.
T Consensus 97 ~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 97 RLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 23467999999999865422 111 222 223333445665433333245567777543
No 316
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00079 Score=80.24 Aligned_cols=162 Identities=20% Similarity=0.298 Sum_probs=105.2
Q ss_pred ccccccc-hHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeech
Q 005738 191 FKDVAGC-DEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSGS 259 (680)
Q Consensus 191 f~dv~G~-~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~s 259 (680)
++-++|. ++..+++.+++. ..+ .++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~---Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS---RKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHh---ccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5567776 444444444432 222 2466999999999999999999854 2345666655
Q ss_pred hhh--hhhccCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 260 DFM--EMFVGVGPSRVRSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 260 ~~~--~~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
.+. .++.|+.+.+++.+.+.+... ..-||||||++-+...... .......|- |..+- .++++-+|+
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-------~~~~d~~nl-Lkp~L---~rg~l~~IG 321 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-------YGAIDAANL-LKPLL---ARGGLWCIG 321 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-------chHHHHHHh-hHHHH---hcCCeEEEe
Confidence 433 345677788999999988743 4569999999999654321 112222232 22222 344588888
Q ss_pred ccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 337 GTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 337 aTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
||...+ .=||++-| ||+ .+.++.|+.+.-..||+.....
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 876322 23899999 996 5678899988777777766554
No 317
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00055 Score=65.62 Aligned_cols=103 Identities=29% Similarity=0.437 Sum_probs=62.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhhhh-------h---h---ccCchhHHHHHHHHHHhcCCeEEEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGSDFME-------M---F---VGVGPSRVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s~~~~-------~---~---~g~~~~~vr~lf~~A~~~~P~ILfI 290 (680)
.-+.|.||+|+|||+|++++++..... -+.+++..... . | +..+ .+.+-.+..+....|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 458899999999999999999976321 12333321110 1 1 1222 33455677777788999999
Q ss_pred cCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 291 DEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 291 DEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
||.. .+.+......+.+++..+-. . +..++.+|+..+.+
T Consensus 105 DEp~-----------~~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 105 DEPT-----------SGLDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred eCCC-----------cCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 9963 23444555566666665432 2 34566677765543
No 318
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.41 E-value=0.0019 Score=69.20 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..|..+.|+|+.|+|||++.+.+-+++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999998866
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.41 E-value=0.0029 Score=70.87 Aligned_cols=192 Identities=15% Similarity=0.236 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh-------h--------hccC-c----hhHHHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME-------M--------FVGV-G----PSRVRSLFQE 279 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~-------~--------~~g~-~----~~~vr~lf~~ 279 (680)
..|.-++++|++|+||||++..+|..+ |..+..+++..+.. . +.+. . ...++..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 357889999999999999999998866 55555555533211 0 1111 1 1223444555
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccc--
Q 005738 280 ARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQ-- 357 (680)
Q Consensus 280 A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~-- 357 (680)
+... .+|+||..-.+ ..+. ..+.+|-...+-..+..-++|+-++...+.++.+ + +|...
T Consensus 173 ~~~~--DvVIIDTAGr~----------~~d~---~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a--~--~F~~~l~ 233 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH----------ALEE---DLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA--K--AFHEAVG 233 (437)
T ss_pred hhcC--CEEEEECCCcc----------cchH---HHHHHHHHHHHHhcccceeEEEeccccHHHHHHH--H--HHHhcCC
Confidence 5443 79999986333 1122 2233322222222234445666655544433322 1 23221
Q ss_pred ---cccCCCCHHHHHH-HHHHHh-hcc---------cCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH---------
Q 005738 358 ---ITIDKPDIKGRDQ-IFQIYL-KKL---------KLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI--------- 414 (680)
Q Consensus 358 ---I~v~~Pd~~eR~~-Il~~~l-~~~---------~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~--------- 414 (680)
+-+..-|...|-. +|.... .+. ..++-..++.+.++.+.-|+ .|+..|++.|...
T Consensus 234 i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~ 311 (437)
T PRK00771 234 IGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKD 311 (437)
T ss_pred CCEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHH
Confidence 2233333333322 222211 111 11111223346777776664 3788887765432
Q ss_pred HHHhcCCcccHHHHHHHHHHH
Q 005738 415 AARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~~v 435 (680)
+.+-.+...+.+||..-++.+
T Consensus 312 ~~~~~~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 312 VEKMMKGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHHHcCCcCHHHHHHHHHHH
Confidence 111223457788888877765
No 320
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.00091 Score=73.17 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=44.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCC-----C-eEEeech------hhhhh---------hccCchhHHH---HHHHHHHh-
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGV-----P-FLSMSGS------DFMEM---------FVGVGPSRVR---SLFQEARQ- 282 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~-----~-~i~is~s------~~~~~---------~~g~~~~~vr---~lf~~A~~- 282 (680)
.+|+||||+|||+|++.|++.... . ++.+... ++... +-.....+++ .+++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999986633 2 2222221 11111 1122233333 34444443
Q ss_pred ---cCCeEEEEcCcchhhhhc
Q 005738 283 ---CAPSIVFIDEIDAIGRAR 300 (680)
Q Consensus 283 ---~~P~ILfIDEiD~L~~~r 300 (680)
....+||||||+.+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 245799999999997653
No 321
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00015 Score=78.37 Aligned_cols=28 Identities=46% Similarity=0.776 Sum_probs=23.5
Q ss_pred hcCCCCCe--EEEEcCCCChHHHHHHHHHH
Q 005738 220 LGAKIPKG--ALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 220 ~g~~~p~g--vLL~GppGtGKT~LAralA~ 247 (680)
+.+.+.+| +-|.||+||||||+.|+||+
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34556666 66999999999999999998
No 322
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.40 E-value=0.0019 Score=69.68 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=94.2
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh------hh
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME------MF 265 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~------~~ 265 (680)
..+.+.+.+.+.|..++-.. ....|..+.|+|..|||||.+.|.+-+.++.|.++++|-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 45677777777777665321 2357888999999999999999999999999999999865431 11
Q ss_pred ---c------cC----chhHHH---HHHHH--HHhcC--CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 266 ---V------GV----GPSRVR---SLFQE--ARQCA--PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 266 ---~------g~----~~~~vr---~lf~~--A~~~~--P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
+ |. ....+. .+|.+ +..+. .-.|++|.+|.+-.. ....++.|+..-.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~------------~a~ll~~l~~L~e- 143 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM------------DAILLQCLFRLYE- 143 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc------------chHHHHHHHHHHH-
Confidence 1 11 011222 23333 22222 457889999999311 1123444443322
Q ss_pred CCCCCCeEEEeccCCCCCCchhhcCCCccc-cccccCCCCHHHHHHHHHHHhh
Q 005738 326 FGTTAGVVVLAGTNRPDILDKALLRPGRFD-RQITIDKPDIKGRDQIFQIYLK 377 (680)
Q Consensus 326 ~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~ 377 (680)
.-+...+.++.+...++. .-+.+-|-++ -.+++|.|+.++.+.|+..--.
T Consensus 144 l~~~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 144 LLNEPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred HhCCCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 212233333333222211 1122223333 3678999999999988865433
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.37 E-value=0.0013 Score=67.67 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=29.3
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCCeEEeech
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSMSGS 259 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e---~~~~~i~is~s 259 (680)
|++....+|++||||||||+||..++.+ .|-+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 5555567999999999999999876553 36677777643
No 324
>PF14516 AAA_35: AAA-like domain
Probab=97.35 E-value=0.0088 Score=64.84 Aligned_cols=170 Identities=16% Similarity=0.133 Sum_probs=91.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh------------------hccC-------------chh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM------------------FVGV-------------GPS 271 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~------------------~~g~-------------~~~ 271 (680)
.-+.|.||..+|||++...+...+ |...+++++..+-+. -++. ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 457899999999999999887655 677777776543110 0000 112
Q ss_pred HHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---CCCCe-EEEeccCCCCCC
Q 005738 272 RVRSLFQEA---RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---TTAGV-VVLAGTNRPDIL 344 (680)
Q Consensus 272 ~vr~lf~~A---~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---~~~~V-iVIaaTN~~~~L 344 (680)
.....|++. ....|-||+|||||.+.... ......+..|-...+.-. ....+ +|++.+..+...
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~---------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP---------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCc---------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 334445442 22468899999999995321 111223322222222111 11222 333333222222
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHH
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNE 410 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~e 410 (680)
...-.+|--+...+.++.-+.++...+++.|-.. ..... ++.|-..|.|.. -=+..+|..
T Consensus 183 ~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~~-~~~l~~~tgGhP-~Lv~~~~~~ 242 (331)
T PF14516_consen 183 LDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQEQ-LEQLMDWTGGHP-YLVQKACYL 242 (331)
T ss_pred cCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHHH-HHHHHHHHCCCH-HHHHHHHHH
Confidence 2222344445567788888888888887776432 22222 577888888854 334444443
No 325
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.35 E-value=0.00087 Score=69.60 Aligned_cols=75 Identities=27% Similarity=0.483 Sum_probs=50.7
Q ss_pred hhcCCCCCeEEEEcCCCChHHHHHHHHHH------hcCCCeEEeechhhhhh-----hccCchhHHHHHHHHHH------
Q 005738 219 ELGAKIPKGALLVGPPGTGKTLLAKATAG------ESGVPFLSMSGSDFMEM-----FVGVGPSRVRSLFQEAR------ 281 (680)
Q Consensus 219 ~~g~~~p~gvLL~GppGtGKT~LAralA~------e~~~~~i~is~s~~~~~-----~~g~~~~~vr~lf~~A~------ 281 (680)
+..++....+||.||.|.|||+||+-+.. ++..+|+.++|..+... .+|. ++..|.-|+
T Consensus 202 rva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gl 277 (531)
T COG4650 202 RVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGL 277 (531)
T ss_pred HHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhh
Confidence 34555567799999999999999999864 45789999999876421 1111 122222221
Q ss_pred --hcCCeEEEEcCcchhh
Q 005738 282 --QCAPSIVFIDEIDAIG 297 (680)
Q Consensus 282 --~~~P~ILfIDEiD~L~ 297 (680)
....+++|+|||..|+
T Consensus 278 lrsadggmlfldeigelg 295 (531)
T COG4650 278 LRSADGGMLFLDEIGELG 295 (531)
T ss_pred hccCCCceEehHhhhhcC
Confidence 1234699999998884
No 326
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.33 E-value=0.00081 Score=66.14 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=62.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhh---------------------------hhhhcc--CchhHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSDF---------------------------MEMFVG--VGPSRVR 274 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~~---------------------------~~~~~g--~~~~~vr 274 (680)
.-+.|.||+|+|||||++.+++.... --+.+++.+. ...... .+..+.|
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 44789999999999999999986521 1122222110 000000 0122345
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 275 SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 275 ~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
-.+..+....|.++++||- +.+.+......+.+++..+.. ..+..+|.+|+.++.
T Consensus 106 l~laral~~~p~llllDEP-----------~~~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 106 VLLARALAQEPPILLLDEP-----------TSHLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHhcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 5677777889999999995 334555666677777766532 213466667776554
No 327
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.32 E-value=0.00052 Score=76.26 Aligned_cols=85 Identities=27% Similarity=0.403 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC---ch-
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL---DK- 346 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L---D~- 346 (680)
++.|-.+.+|..-.|.+|++||=+ ++.+.+-++.+..-+..+ +..++++|..|++|..| |.
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPN-----------sNLD~~GE~AL~~Ai~~~----k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPN-----------SNLDSEGEAALAAAILAA----KARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCC-----------CCcchhHHHHHHHHHHHH----HHcCCEEEEEecCHHHHhhccee
Confidence 345666677777789999999942 234455555555555444 34567777888988654 22
Q ss_pred hhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 347 ALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 347 aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
-++.-||.. ..-.|.+++....+.
T Consensus 542 lvl~~G~~~--------~FG~r~eVLa~~~~~ 565 (580)
T COG4618 542 LVLQDGRIA--------AFGPREEVLAKVLRP 565 (580)
T ss_pred eeecCChHH--------hcCCHHHHHHHhcCC
Confidence 123334432 112456777777653
No 328
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.32 E-value=0.00037 Score=72.99 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=63.6
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC---CeEEeec-hhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV---PFLSMSG-SDF 261 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~---~~i~is~-s~~ 261 (680)
....+++++.-.....+.+.+++...- +...+++++||+||||||+++++...... .++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 456689998877777777777666521 12367999999999999999999987733 3444332 111
Q ss_pred hhh------h-ccCchhHHHHHHHHHHhcCCeEEEEcCc
Q 005738 262 MEM------F-VGVGPSRVRSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 262 ~~~------~-~g~~~~~vr~lf~~A~~~~P~ILfIDEi 293 (680)
.-. + .........+++..+.+..|++|+|+|+
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 100 0 0123345678889999999999999998
No 329
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.001 Score=66.58 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
++.|-++++|....|.||++||- .++.++-....+..|+.++. ..-.+||.|-|
T Consensus 154 QQQRLcIARalAv~PeVlLmDEP-----------tSALDPIsT~kIEeLi~eLk----~~yTIviVTHn 207 (253)
T COG1117 154 QQQRLCIARALAVKPEVLLMDEP-----------TSALDPISTLKIEELITELK----KKYTIVIVTHN 207 (253)
T ss_pred HHHHHHHHHHHhcCCcEEEecCc-----------ccccCchhHHHHHHHHHHHH----hccEEEEEeCC
Confidence 44566788888889999999995 34455666667788887764 22345665555
No 330
>PRK06762 hypothetical protein; Provisional
Probab=97.31 E-value=0.00081 Score=64.98 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
|.-++|+|+||+||||+|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5668999999999999999999998666777776665543
No 331
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.30 E-value=0.0013 Score=65.18 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=53.1
Q ss_pred EEEEcCCCChHHHHHHHHHH-----hcCCCe--------------EEeechhhhhhhccCchhHHHHHHHHHHh--cCCe
Q 005738 228 ALLVGPPGTGKTLLAKATAG-----ESGVPF--------------LSMSGSDFMEMFVGVGPSRVRSLFQEARQ--CAPS 286 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~-----e~~~~~--------------i~is~s~~~~~~~g~~~~~vr~lf~~A~~--~~P~ 286 (680)
++|+||.|+|||++.|.++- .+|.++ ..+...+....-.+.....++. +..+.. ..|.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~-l~~~l~~~~~~~ 80 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKE-TANILKNATENS 80 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHH-HHHHHHhCCCCe
Confidence 68999999999999999983 334332 1111122111111111222333 222323 3789
Q ss_pred EEEEcCcchhhhhcCCCCCCCCChH-HHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 287 IVFIDEIDAIGRARGRGGFSGGNDE-RESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 287 ILfIDEiD~L~~~r~~~~~~~~~~~-~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
++++||.-. +.+.. ....+..++..+.. ..+..+|.+|+..+
T Consensus 81 llllDEp~~-----------g~d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 81 LVLLDELGR-----------GTSTYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEEecCCC-----------CCCHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 999999732 22332 33444555555432 22446667787654
No 332
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.30 E-value=0.0009 Score=75.56 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
-++||+|.||||||-+.|.+++-+...++..
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 4599999999999999999999876655543
No 333
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.30 E-value=0.00035 Score=74.59 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeec-hhhh-------hhhccCchhHHHHHHHHHHhcCCeEEEEc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSG-SDFM-------EMFVGVGPSRVRSLFQEARQCAPSIVFID 291 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~-s~~~-------~~~~g~~~~~vr~lf~~A~~~~P~ILfID 291 (680)
.++++++||+|+||||+++++.+.. +..++.+.. .++. ..........+.++++.+.++.|+.|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 3689999999999999999999876 233433321 1111 11112222256788999999999999999
Q ss_pred Cc
Q 005738 292 EI 293 (680)
Q Consensus 292 Ei 293 (680)
|+
T Consensus 212 Ei 213 (299)
T TIGR02782 212 EV 213 (299)
T ss_pred cc
Confidence 98
No 334
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00044 Score=79.81 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh
Q 005738 270 PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE 322 (680)
Q Consensus 270 ~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~ 322 (680)
.++.|-++++|.-..|+||++||+- +..+.+.+..+.+.|..
T Consensus 608 GQKQRIAIARALlr~P~VLILDEAT-----------SALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEAT-----------SALDAESEYLVQEALDR 649 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechh-----------hhcchhhHHHHHHHHHH
Confidence 3566888899999999999999973 44566666677766643
No 335
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.29 E-value=0.0019 Score=68.56 Aligned_cols=161 Identities=20% Similarity=0.376 Sum_probs=96.0
Q ss_pred ccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHH---hcCCCeEEeechhhh--h---
Q 005738 193 DVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG---ESGVPFLSMSGSDFM--E--- 263 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~---e~~~~~i~is~s~~~--~--- 263 (680)
.+.|..+..+.+.+++.. .-..+ ...+++.||.|+|||++....-. +.|-.|+.+....+. +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 457888888888887765 22222 36799999999999987654432 556666655432211 0
Q ss_pred ----------------hhccCchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh
Q 005738 264 ----------------MFVGVGPSRVRSLFQEARQC-----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE 322 (680)
Q Consensus 264 ----------------~~~g~~~~~vr~lf~~A~~~-----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~ 322 (680)
..+|.....+..++...+.. .|.|.++||||.+.+. .++..++.++..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-----------~rQtllYnlfDi 164 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-----------SRQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-----------hhhHHHHHHHHH
Confidence 12233334444444433321 1234445799988432 234456666554
Q ss_pred hcCCCCCCCeEEEeccCCCCCC---chhhcCCCccccc-cccCCC-CHHHHHHHHHHHhh
Q 005738 323 MDGFGTTAGVVVLAGTNRPDIL---DKALLRPGRFDRQ-ITIDKP-DIKGRDQIFQIYLK 377 (680)
Q Consensus 323 md~~~~~~~ViVIaaTN~~~~L---D~aLlRpgRfd~~-I~v~~P-d~~eR~~Il~~~l~ 377 (680)
-.. .+..+.||+.|.+.+.+ .....+ ||... |++++| +..+-.++++..+.
T Consensus 165 sqs--~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 165 SQS--ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred Hhh--cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 332 45678899988877655 455666 89754 665543 56777888887763
No 336
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.29 E-value=0.00072 Score=68.64 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=66.4
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---C------CCeEEeechhhh-h-h------hcc---------------C
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---G------VPFLSMSGSDFM-E-M------FVG---------------V 268 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~------~~~i~is~s~~~-~-~------~~g---------------~ 268 (680)
|+....-+.|+||||+|||+++..+|... + ...++++..+-. . . ..+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 34444458899999999999999998754 3 556777654311 0 0 000 0
Q ss_pred chhHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 269 GPSRVRSLFQEA----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 269 ~~~~vr~lf~~A----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
....+...+... ....+++|+||-+..+......+. ....++.+.+.+++..|..+....++.||.+.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~--~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR--GMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC--chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111222223322 245678999999998865421100 001234455666666666555556677776654
No 337
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.29 E-value=0.00081 Score=68.68 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhhh------hh---------------hcc--C
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSDFM------EM---------------FVG--V 268 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~~~------~~---------------~~g--~ 268 (680)
|++...-+.|+||||||||+++..++... +...++++..+-. .. ++. .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34444557899999999999999998543 2567777754310 00 000 0
Q ss_pred chhHH----HHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 269 GPSRV----RSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 269 ~~~~v----r~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
....+ ..+-...... .+++|+||-+.++......+ .....++.+.+.+++..|..+....++.|+.+.+
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 01111 2222223344 78999999999886431110 0011344456666666665555556677776644
No 338
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.0016 Score=65.84 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=45.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--C------CCeEEeec-hhhhhhhccCc-------------hhHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES--G------VPFLSMSG-SDFMEMFVGVG-------------PSRVRSLFQEARQC 283 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~--~------~~~i~is~-s~~~~~~~g~~-------------~~~vr~lf~~A~~~ 283 (680)
.+.|+.|||||||||+.|-+|+-+ + ..+..++- +++.....|.. .-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 467999999999999999999865 2 22344443 23322222221 11223455666789
Q ss_pred CCeEEEEcCcch
Q 005738 284 APSIVFIDEIDA 295 (680)
Q Consensus 284 ~P~ILfIDEiD~ 295 (680)
.|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999843
No 339
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.28 E-value=0.00081 Score=66.24 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=60.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeech--------------------h-----hh------hh--h---cc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGS--------------------D-----FM------EM--F---VG 267 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s--------------------~-----~~------~~--~---~g 267 (680)
.-+.|.||+|+|||||++.+++..... -+.+++. + +. +. + ..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS 106 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLS 106 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcC
Confidence 347899999999999999999864110 0111110 0 00 00 0 11
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+..+.|-.+..|....|.++++||- +++.+....+.+.+++..+.. . +..+|.+|+.++
T Consensus 107 -~G~~qrl~la~al~~~p~llllDEP-----------~~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 165 (182)
T cd03215 107 -GGNQQKVVLARWLARDPRVLILDEP-----------TRGVDVGAKAEIYRLIRELAD---A-GKAVLLISSELD 165 (182)
T ss_pred -HHHHHHHHHHHHHccCCCEEEECCC-----------CcCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 1122344566677788999999994 345566667777777776632 2 345666677654
No 340
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.27 E-value=0.0042 Score=62.35 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPF 253 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~ 253 (680)
|.-++++|+||+|||++|+.+|.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999998765
No 341
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.26 E-value=0.0018 Score=63.40 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=55.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh-----hhh---h---------ccCchhHHHHHHHHHHhcCCeEEEE
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF-----MEM---F---------VGVGPSRVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~-----~~~---~---------~g~~~~~vr~lf~~A~~~~P~ILfI 290 (680)
+|+.|++|+|||++|..++...+.+.+++..+.- ... + ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 5899999999999999999887778777764321 111 0 1112223344332221 4679999
Q ss_pred cCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 291 DEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 291 DEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
|-+..+..+--..+...........+..|+..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 99998876543211000002223455666666543
No 342
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.25 E-value=0.0049 Score=66.87 Aligned_cols=160 Identities=23% Similarity=0.275 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhhhhh-----------h----ccCchh----HHHHHHHHH
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGSDFMEM-----------F----VGVGPS----RVRSLFQEA 280 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s~~~~~-----------~----~g~~~~----~vr~lf~~A 280 (680)
-.+|+|++|||.-|||||+|.-.....+-.. =-.+...+|+-. . .|.... -+. ....-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~-~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLP-VVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccH-HHHHH
Confidence 4469999999999999999999888654210 001111222211 0 010000 011 11111
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC-CCCchhhcCCCccccccc
Q 005738 281 RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP-DILDKALLRPGRFDRQIT 359 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~-~~LD~aLlRpgRfd~~I~ 359 (680)
.....++|++||+..- +-.-.-+|+.|...+ -+.+|+++||+|+. +.|- .- -+.|...
T Consensus 190 Ia~ea~lLCFDEfQVT------------DVADAmiL~rLf~~L----f~~GvVlvATSNR~P~dLY----kn-GlQR~~F 248 (467)
T KOG2383|consen 190 IAEEAILLCFDEFQVT------------DVADAMILKRLFEHL----FKNGVVLVATSNRAPEDLY----KN-GLQRENF 248 (467)
T ss_pred Hhhhceeeeechhhhh------------hHHHHHHHHHHHHHH----HhCCeEEEEeCCCChHHHh----hc-chhhhhh
Confidence 1223479999998432 111122455555444 24589999999964 3332 22 2344444
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC----CCH-HHHHHHHHHHH
Q 005738 360 IDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG----FAG-ADIANVCNEAA 412 (680)
Q Consensus 360 v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G----~sg-adL~~lv~eAa 412 (680)
+| -..+|+.++.-+.++..+|. ...+ .+.+ |.+ .|...++++-.
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDY--R~~~-~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDY--RRKA-KSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheEEecCCccch--hhcc-CCCCceeEecChhhHHHHHHHHH
Confidence 54 25788888888888877775 3222 2221 233 37888887755
No 343
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.24 E-value=0.0024 Score=64.83 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-----hcCCCeEE--------------eechhhhhhhccCchhHHHHH-HHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAG-----ESGVPFLS--------------MSGSDFMEMFVGVGPSRVRSL-FQEARQCA 284 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~-----e~~~~~i~--------------is~s~~~~~~~g~~~~~vr~l-f~~A~~~~ 284 (680)
++.++|+||.|+|||++.|.++. ..|.++.. +...+-.....+.....++.+ +..+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36689999999999999999983 23433211 111110011111112222222 22223356
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCCh-HHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhh
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGND-ERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKAL 348 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~-~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aL 348 (680)
|++++|||+.. +.+. +....+..++..+-.. ...+..+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~-----------gtd~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGK-----------GTDTEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccC-----------CCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhhh
Confidence 89999999732 2232 2334444555554221 112346777888776554443
No 344
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00085 Score=65.86 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=62.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechh----------hh----------hhhc-----------cCchhH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGSD----------FM----------EMFV-----------GVGPSR 272 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s~----------~~----------~~~~-----------g~~~~~ 272 (680)
.-+.|.||+|+|||||++++++..... -+.+++.+ +. ..+. -.+..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~ 106 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQ 106 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHH
Confidence 347799999999999999999864210 01111100 00 0000 011234
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.|-.+..|....|.++++||- +.+.+......+.+++..+.. ..+..+|.+|+.++.+
T Consensus 107 qr~~la~al~~~p~llilDEP-----------~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 164 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEP-----------TSALDPITRREVRALLKSLQA---QLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 456677888889999999994 345566666677777766532 2234566666655443
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.22 E-value=0.00074 Score=73.55 Aligned_cols=68 Identities=18% Similarity=0.349 Sum_probs=45.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC----CeEEeec-hhhh---------hhhccCchhHHHHHHHHHHhcCCeEEEEc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV----PFLSMSG-SDFM---------EMFVGVGPSRVRSLFQEARQCAPSIVFID 291 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~----~~i~is~-s~~~---------~~~~g~~~~~vr~lf~~A~~~~P~ILfID 291 (680)
..++++||+|+||||+++++.+...- .++.+.. .++. ..-+|.......++++.+.++.|++|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 45789999999999999999986642 2333311 1211 00123222345667788888999999999
Q ss_pred Cc
Q 005738 292 EI 293 (680)
Q Consensus 292 Ei 293 (680)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 98
No 346
>PRK09354 recA recombinase A; Provisional
Probab=97.22 E-value=0.0012 Score=71.49 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh-------------hc---cCchhHHHHHHHHHHhcCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM-------------FV---GVGPSRVRSLFQEARQCAP 285 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~-------------~~---g~~~~~vr~lf~~A~~~~P 285 (680)
-+-++|+||||||||+||-.++.++ |...++++...-.+. ++ ...+..+..+-...+...+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 3447899999999999999876543 667777765431111 01 1112222222223345678
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGN--DERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~--~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
++|+||=+-++.++..-.+..+.. ....+.+.+.|..+-..-...++.+|.+
T Consensus 140 ~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 140 DLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred CEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 999999999987532111111111 1222344454444443334566777765
No 347
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00027 Score=72.42 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=24.9
Q ss_pred hHhhhcCCCCCe--EEEEcCCCChHHHHHHHHHH
Q 005738 216 KYEELGAKIPKG--ALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 216 ~~~~~g~~~p~g--vLL~GppGtGKT~LAralA~ 247 (680)
...++...++.| +.|.||+||||||+.|.+-+
T Consensus 16 av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 334455666666 66889999999999999976
No 348
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.21 E-value=0.00088 Score=65.49 Aligned_cols=27 Identities=44% Similarity=0.785 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCe
Q 005738 227 GALLVGPPGTGKTLLAKATAGES---GVPF 253 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~---~~~~ 253 (680)
.++|+|+||+||||+++.+...+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 37999999999999999999887 5553
No 349
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.20 E-value=0.0031 Score=61.80 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=55.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh-----hhh------------ccCchhHHHHHHHHHHhcCCeEEE
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM-----EMF------------VGVGPSRVRSLFQEARQCAPSIVF 289 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~-----~~~------------~g~~~~~vr~lf~~A~~~~P~ILf 289 (680)
-+|+.|+||||||++|..++...+.+++++...... ... .-+....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 479999999999999999999988887777654321 110 000011223333221 13456899
Q ss_pred EcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 290 IDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 290 IDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
||-+..+..+.-.. .........+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 99999886543210 0012234456666666654
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.19 E-value=0.0019 Score=65.72 Aligned_cols=108 Identities=24% Similarity=0.302 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhh----hhh----------h--------c----c---
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDF----MEM----------F--------V----G--- 267 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~----~~~----------~--------~----g--- 267 (680)
|++....+|++||||||||+|+..++.+. |-+.++++..+- .+. + . .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 45555669999999999999998876433 778777765321 110 0 0 0
Q ss_pred ----CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 268 ----VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 268 ----~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
....-+..+.+......+++++||-+..+ ... .........+..+...+. ..++.++.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~------~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLY------DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTS------SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhc------CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01112233334445567799999999998 221 123344556666666653 33455555544
No 351
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.19 E-value=0.00058 Score=67.66 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=45.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeech-hhh-------hh------hccCchhHHHHHHHHHHhcCCeEE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGS-DFM-------EM------FVGVGPSRVRSLFQEARQCAPSIV 288 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s-~~~-------~~------~~g~~~~~vr~lf~~A~~~~P~IL 288 (680)
...++|.||+|+||||+++++++... ...+.+... ++. .. ..+.....+.++++.+.+..|+++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 46789999999999999999998653 122222211 110 00 001122346777888888899999
Q ss_pred EEcCc
Q 005738 289 FIDEI 293 (680)
Q Consensus 289 fIDEi 293 (680)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99998
No 352
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0024 Score=70.40 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechhhh-------hhh---------ccCchhHHHHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSMSGSDFM-------EMF---------VGVGPSRVRSLFQEA 280 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is~s~~~-------~~~---------~g~~~~~vr~lf~~A 280 (680)
.|+-++|+||+|+||||.+..+|..+ +..+..+++..+. ..| .......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 36779999999999999999998754 2333333332211 111 111223333333333
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC-CCeEEEeccCCCCCCchhh
Q 005738 281 RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT-AGVVVLAGTNRPDILDKAL 348 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~-~~ViVIaaTN~~~~LD~aL 348 (680)
....+|+||.+.... .+.. .+..+...++..... ..++|+.+|.....+...+
T Consensus 253 --~~~DlVLIDTaGr~~----------~~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP----------KDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --CCCCEEEEcCCCCCc----------cCHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 345799999985441 1221 244444444433323 4578888887766665444
No 353
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.19 E-value=0.001 Score=75.12 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhh------ccC--------chhHHHHHHHHHHhcC
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMF------VGV--------GPSRVRSLFQEARQCA 284 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~------~g~--------~~~~vr~lf~~A~~~~ 284 (680)
+....-++|+|+||+|||+|+..++... +.++++++..+-.+.. +|. .+..+..+...+....
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3333458899999999999999997754 4577888764332211 111 1223455666667778
Q ss_pred CeEEEEcCcchhhh
Q 005738 285 PSIVFIDEIDAIGR 298 (680)
Q Consensus 285 P~ILfIDEiD~L~~ 298 (680)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999998853
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.18 E-value=0.0029 Score=66.43 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=44.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCeEEeec-hhhhh-----hhcc-CchhHHHHHHHHHHhcCCeEEEEcCc
Q 005738 227 GALLVGPPGTGKTLLAKATAGESG---VPFLSMSG-SDFME-----MFVG-VGPSRVRSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~---~~~i~is~-s~~~~-----~~~g-~~~~~vr~lf~~A~~~~P~ILfIDEi 293 (680)
.++++||+|+||||+++++..... ..++.+.. .++.- ..+. .......+++..+.+..|++|+|+|+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 478999999999999999977663 23444421 11110 0011 11123567788888899999999998
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.18 E-value=0.0018 Score=66.39 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=29.7
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
|++...-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45544568899999999999999887654 778777774
No 356
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.0029 Score=68.52 Aligned_cols=73 Identities=26% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh-------hhh---ccC---------c-hhHHHHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM-------EMF---VGV---------G-PSRVRSLFQEA 280 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~-------~~~---~g~---------~-~~~vr~lf~~A 280 (680)
.|.-++|+||||+||||++..+|..+ +..+..+++..+. ..+ .|. . ...+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36779999999999999888888754 4555445443221 110 111 1 12234444555
Q ss_pred HhcCCeEEEEcCcchh
Q 005738 281 RQCAPSIVFIDEIDAI 296 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L 296 (680)
+....++|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555679999987443
No 357
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.0015 Score=65.02 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=41.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech----hhh---hhhccCc-----hhHHHHHHHHHH--hcCCeEEE
Q 005738 227 GALLVGPPGTGKTLLAKATAGES---GVPFLSMSGS----DFM---EMFVGVG-----PSRVRSLFQEAR--QCAPSIVF 289 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s----~~~---~~~~g~~-----~~~vr~lf~~A~--~~~P~ILf 289 (680)
-.+++||||+|||+++..++..+ +..++.+..+ ... ....|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 36899999999999998888765 5555555331 110 0111211 112234444433 34568999
Q ss_pred EcCcchh
Q 005738 290 IDEIDAI 296 (680)
Q Consensus 290 IDEiD~L 296 (680)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999655
No 358
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.17 E-value=0.00087 Score=77.08 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
++.|-.+++|.-..|.|+++||. +++.+.+.++.+.+.+..+. .+..+|..|++
T Consensus 475 QrQRiaiARall~~~~iliLDE~-----------TSaLD~~te~~I~~~l~~~~-----~~~TvIiItHr 528 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEP-----------TEHLDAGTESELLEDLLAAL-----SGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHhc-----CCCEEEEEecC
Confidence 34466677777788999999996 34556677777766665531 23455555664
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0018 Score=63.71 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=36.8
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 282 QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
-+...+-++||-- .+-+.+....++.++..-- ..+=+||+||+.|-.++++-.|
T Consensus 146 ls~~pLWiLDEP~-----------taLDk~g~a~l~~l~~~H~----~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 146 LSPAPLWILDEPF-----------TALDKEGVALLTALMAAHA----AQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred cCCCCceeecCcc-----------cccCHHHHHHHHHHHHHHh----cCCCEEEEecCCccCCCccceE
Confidence 3444577889953 3445566678888876632 3445788899998888877776
No 360
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.0017 Score=64.60 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=59.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechh-----------------hh------hh--h-----ccCchh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG----VPFLSMSGSD-----------------FM------EM--F-----VGVGPS 271 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~----~~~i~is~s~-----------------~~------~~--~-----~g~~~~ 271 (680)
.-+.|.||+|+|||||++.+++... .--+.+++.+ +. +. + .-.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe 113 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQ 113 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHH
Confidence 4578999999999999999997421 0001111100 00 00 0 001112
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+.+-.+..|....|.++++||- +++.+......+.+++..+.. .+..+|.+|+.++
T Consensus 114 ~qrv~la~al~~~p~vlllDEP-----------~~~LD~~~~~~l~~~l~~~~~----~~~tiiivtH~~~ 169 (192)
T cd03232 114 RKRLTIGVELAAKPSILFLDEP-----------TSGLDSQAAYNIVRFLKKLAD----SGQAILCTIHQPS 169 (192)
T ss_pred hHHHHHHHHHhcCCcEEEEeCC-----------CcCCCHHHHHHHHHHHHHHHH----cCCEEEEEEcCCh
Confidence 3344567777788999999995 334566666677777776532 2345666777654
No 361
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.003 Score=65.58 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=31.9
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e 248 (680)
.+.-+.+.......+...+. + ..-+++.||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~-----------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---S-----------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---c-----------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34456666666666555442 1 136899999999999999999985
No 362
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.15 E-value=0.0015 Score=65.50 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~ 247 (680)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3489999999999999999993
No 363
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.15 E-value=0.0024 Score=63.70 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=60.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--CCC--eEEeechh------------------hh------hh------h-ccCch
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES--GVP--FLSMSGSD------------------FM------EM------F-VGVGP 270 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~--~~~--~i~is~s~------------------~~------~~------~-~g~~~ 270 (680)
..+.|.||+|+|||+|.+.+++.. ... -+.+++.+ +. +. . .-.+.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G 115 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGG 115 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHH
Confidence 458899999999999999999976 210 01111100 00 00 0 00112
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.+.+-.+..|....|.++++||- +++.+....+.+..++.++. .. +..+|.+|+.++
T Consensus 116 ~~qrv~laral~~~p~illlDEP-----------~~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 172 (194)
T cd03213 116 ERKRVSIALELVSNPSLLFLDEP-----------TSGLDSSSALQVMSLLRRLA---DT-GRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHH---hC-CCEEEEEecCch
Confidence 23345667777788999999995 33445556666667766653 22 445666666553
No 364
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00092 Score=68.86 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.++-+..+.|.+|++||- +++.+......+.+++..+. ...+..+|.+|++.+.
T Consensus 146 RvaIA~vLa~~P~iliLDEP-----------ta~LD~~~~~~l~~~l~~L~---~~~~~tii~~tHd~~~ 201 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEP-----------TAGLDPKGRRELLELLKKLK---EEGGKTIIIVTHDLEL 201 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCC-----------CCCCCHHHHHHHHHHHHHHH---hcCCCeEEEEeCcHHH
Confidence 33445556678999999994 45566666777777777764 2334556666765543
No 365
>PRK13948 shikimate kinase; Provisional
Probab=97.14 E-value=0.0015 Score=64.78 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
.|..++|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4678999999999999999999999999998665
No 366
>PRK13947 shikimate kinase; Provisional
Probab=97.13 E-value=0.00043 Score=67.09 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
+++|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999997654
No 367
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.13 E-value=0.00088 Score=78.06 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
++.|-.+.+|.-..|.|+++||. +++-+.+.++.+.+.+..+. .+..+|..|++++. ++
T Consensus 490 QrQRialARAll~~~~IliLDE~-----------TSaLD~~te~~i~~~l~~~~-----~~~TvIiItHrl~~-----i~ 548 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEP-----------TASLDAHSEQLVMQALNAAS-----RRQTTLMVTHQLED-----LA 548 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHh-----CCCEEEEEecChHH-----HH
Confidence 34466677777788999999996 44556666666666665541 23456667787643 33
Q ss_pred CCccccccccC
Q 005738 351 PGRFDRQITID 361 (680)
Q Consensus 351 pgRfd~~I~v~ 361 (680)
.+|+.+.+.
T Consensus 549 --~aD~Iivl~ 557 (588)
T PRK11174 549 --QWDQIWVMQ 557 (588)
T ss_pred --hCCEEEEEe
Confidence 567777664
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.13 E-value=0.0019 Score=67.57 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=28.7
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
|...-.-++|.||||+|||+++..++..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34444568899999999999999887653 667766665
No 369
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.12 E-value=0.0031 Score=63.35 Aligned_cols=124 Identities=25% Similarity=0.364 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHH
Q 005738 201 KQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEA 280 (680)
Q Consensus 201 k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A 280 (680)
+..|...|....+| |.+...-++|.|+-|+|||++.+.|+.+ ++.-+.... . ...... ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~-----~-~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF-----D-DKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC-----C-CcHHHH----HH
Confidence 55555555554444 5566667889999999999999999655 211111110 0 111111 11
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh-hcCCCC---------CCCeEEEeccCCCCCC-chhhc
Q 005738 281 RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE-MDGFGT---------TAGVVVLAGTNRPDIL-DKALL 349 (680)
Q Consensus 281 ~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~-md~~~~---------~~~ViVIaaTN~~~~L-D~aLl 349 (680)
..+ -|+.|||++.+.++ ....+..++.. .+.+.. ....++|+|||..+.| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~------------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK------------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchh------------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 48899999887421 12355555543 222211 2347889999998765 55555
Q ss_pred CCCccccccccC
Q 005738 350 RPGRFDRQITID 361 (680)
Q Consensus 350 RpgRfd~~I~v~ 361 (680)
| || ..|.+.
T Consensus 160 R--Rf-~~v~v~ 168 (198)
T PF05272_consen 160 R--RF-WPVEVS 168 (198)
T ss_pred e--EE-EEEEEc
Confidence 6 77 344443
No 370
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00039 Score=68.26 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
++|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999997654
No 371
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.11 E-value=0.00083 Score=63.64 Aligned_cols=39 Identities=31% Similarity=0.617 Sum_probs=31.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
+++|+|+||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3789999999999999999999999987554 44444433
No 372
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.11 E-value=0.0025 Score=57.75 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
++++++||+|+|||+.+-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 468999999999999888887765
No 373
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0027 Score=64.94 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHH-HHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhc
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERE-STLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALL 349 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~-~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLl 349 (680)
+-+|.+|.-..|.+|++||- ..+.+.... ..++.|-..... .+.--+|..|++++.++|-+-
T Consensus 179 rvLiaRALv~~P~LLiLDEP-----------~~GLDl~~re~ll~~l~~~~~~---~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 179 RVLIARALVKDPELLILDEP-----------AQGLDLIAREQLLNRLEELAAS---PGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHHhcCCCEEEecCc-----------cccCChHHHHHHHHHHHHHhcC---CCCceEEEEEcchhhcccccc
Confidence 67888898899999999993 223333333 444444333322 223345556788887776443
No 374
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.10 E-value=0.0028 Score=70.30 Aligned_cols=140 Identities=24% Similarity=0.307 Sum_probs=69.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHH-----HHHHH---HhcCCeEEEEcCcchhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRS-----LFQEA---RQCAPSIVFIDEIDAIG 297 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~-----lf~~A---~~~~P~ILfIDEiD~L~ 297 (680)
-+|||.|.|||-||-|.|-+-+-+-+-++ .++.. +.-.|.+++-+|+ .+-+- -....+|++|||+|.+
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVY-TSGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKM- 440 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVY-TSGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKM- 440 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEE-ecCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhcc-
Confidence 45999999999999999999775543332 22210 0001111111111 00000 0012379999999998
Q ss_pred hhcCCCCCCCCChHH-HHHHHHHHHhhcCCCCCCCeEEEeccCCC-----------CCC--chhhcCCCccccccccCCC
Q 005738 298 RARGRGGFSGGNDER-ESTLNQLLVEMDGFGTTAGVVVLAGTNRP-----------DIL--DKALLRPGRFDRQITIDKP 363 (680)
Q Consensus 298 ~~r~~~~~~~~~~~~-~~~l~~LL~~md~~~~~~~ViVIaaTN~~-----------~~L--D~aLlRpgRfd~~I~v~~P 363 (680)
|..+ ...-++.. +|++.---..+-. .-+++.-|+|+.|.+ +++ -+.+++ |||..+-+..-
T Consensus 441 --re~D-RVAIHEAMEQQTISIAKAGITT-~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~ 514 (729)
T KOG0481|consen 441 --REDD-RVAIHEAMEQQTISIAKAGITT-TLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDE 514 (729)
T ss_pred --Cchh-hhHHHHHHHhhhHHHhhhccee-eecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEecc
Confidence 2111 11112222 2222221111100 013456688888854 223 467888 99988777644
Q ss_pred CHHHHHHHHHHH
Q 005738 364 DIKGRDQIFQIY 375 (680)
Q Consensus 364 d~~eR~~Il~~~ 375 (680)
..++|-..+..|
T Consensus 515 h~~~~D~~lAkH 526 (729)
T KOG0481|consen 515 HDEERDITLAKH 526 (729)
T ss_pred CcchhhhHHHHH
Confidence 444444333333
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0057 Score=67.20 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh-------hhh---------ccCchhHHHHHHHHHHh-cC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM-------EMF---------VGVGPSRVRSLFQEARQ-CA 284 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~-------~~~---------~g~~~~~vr~lf~~A~~-~~ 284 (680)
|+-++|.||+|+||||++..+|..+ +..+..+++..+. ..| +...+..+.+.+..++. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5678999999999999999999866 3444444442221 111 12344555666665553 23
Q ss_pred CeEEEEcCc
Q 005738 285 PSIVFIDEI 293 (680)
Q Consensus 285 P~ILfIDEi 293 (680)
.++||||-.
T Consensus 321 ~DvVLIDTa 329 (436)
T PRK11889 321 VDYILIDTA 329 (436)
T ss_pred CCEEEEeCc
Confidence 578999875
No 376
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.10 E-value=0.0012 Score=70.44 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|-.+..|....|.++|+||- +++-+......+.+++..+.. ..+..|+.+|+.++.+
T Consensus 144 rl~ia~aL~~~P~lliLDEP-----------t~GLDp~~~~~~~~~l~~l~~---~g~~tvlissH~l~e~ 200 (293)
T COG1131 144 RLSIALALLHDPELLILDEP-----------TSGLDPESRREIWELLRELAK---EGGVTILLSTHILEEA 200 (293)
T ss_pred HHHHHHHHhcCCCEEEECCC-----------CcCCCHHHHHHHHHHHHHHHh---CCCcEEEEeCCcHHHH
Confidence 44456667778999999993 566777777788888877642 3447888889877654
No 377
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00068 Score=71.20 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
++-|-+++.|....|.+|++||= ++.-+......+.++|..+- .+.++.++..|+.++
T Consensus 142 QrQRVALARALA~eP~vLLLDEP-----------f~ALDa~vr~~lr~wLr~~~---~~~~~ttvfVTHD~e 199 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEP-----------FGALDAKVRKELRRWLRKLH---DRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCC-----------chhhhHHHHHHHHHHHHHHH---HhhCceEEEEeCCHH
Confidence 44466677777888999999993 22334444445555554432 345667777787654
No 378
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.09 E-value=0.0028 Score=63.52 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 005738 227 GALLVGPPGTGKTLLAKATA 246 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA 246 (680)
-++|+||.|+|||+|.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999998
No 379
>PRK00625 shikimate kinase; Provisional
Probab=97.09 E-value=0.00048 Score=67.63 Aligned_cols=31 Identities=35% Similarity=0.501 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
.++|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998775
No 380
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.09 E-value=0.0052 Score=62.63 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=27.9
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
|+.....++|.||||+|||+|+..++.+. +.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44455668999999999999999876432 556666654
No 381
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.09 E-value=0.0022 Score=64.13 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=35.1
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
.+..|....|.++++||- +++.+......+.++|..+. ..+..+|.+|+.++.++
T Consensus 137 ~laral~~~p~~lilDEP-----------~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEP-----------LVALDELSLLTIITKIQEHR----AKGGAVLLTSHQDLPLN 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCC-----------CcccCHHHHHHHHHHHHHHH----HcCCEEEEEeCCchhcc
Confidence 344455567899999994 34456666667777776652 12446677777766554
No 382
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0014 Score=63.93 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
+.+.|+|++|+||||+.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56899999999999999999999999998664
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.08 E-value=0.0013 Score=65.91 Aligned_cols=108 Identities=26% Similarity=0.350 Sum_probs=59.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh-------hhh---cc------C----chhHHHHHHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM-------EMF---VG------V----GPSRVRSLFQEAR 281 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~-------~~~---~g------~----~~~~vr~lf~~A~ 281 (680)
|+-++|+||+|+||||.+-.+|..+ +..+-.+++..+. ..| .| . .....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6678999999999999888887755 4444333332221 111 11 1 1123445566665
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 282 QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
...-.+|+||=.-. +..+.+....+..++..+ .+..-.+|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr----------~~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR----------SPRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SS----------SSTHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCc----------chhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 55557999987421 122233334455555544 2344567777766666555
No 384
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0018 Score=65.09 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCch
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDK 346 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~ 346 (680)
.+..|....|.++++||- +++.+......+.++|.++. . .+..+|.+|+..+.++.
T Consensus 137 ~la~al~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~---~-~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 137 ALARLLVSNRPIWILDEP-----------TAALDAAAVALFAELIRAHL---A-QGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHHhcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCchhhcc
Confidence 344455567899999994 34455556666667766542 1 24567777887666554
No 385
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0016 Score=66.53 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
++-|-++.+|....|.+|++||.- +..+...+..+..+|.++. ...+..+|..|+..
T Consensus 146 Q~QRiaIARAL~~~PklLIlDEpt-----------SaLD~siQa~IlnlL~~l~---~~~~lt~l~IsHdl 202 (252)
T COG1124 146 QRQRIAIARALIPEPKLLILDEPT-----------SALDVSVQAQILNLLLELK---KERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHHHHHhccCCCEEEecCch-----------hhhcHHHHHHHHHHHHHHH---HhcCceEEEEeCcH
Confidence 445667888888899999999963 3334444555555555543 34455666666643
No 386
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.06 E-value=0.00091 Score=66.95 Aligned_cols=98 Identities=22% Similarity=0.355 Sum_probs=51.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----hhhccCchhHHHHHHHHHH---------hcCCeEEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----EMFVGVGPSRVRSLFQEAR---------QCAPSIVF 289 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----~~~~g~~~~~vr~lf~~A~---------~~~P~ILf 289 (680)
+-++|.||||||||++++.+...+ +..++.+..+.-. ....|.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999987644 5666666543211 1111222222222222111 12336999
Q ss_pred EcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 290 IDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 290 IDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
|||+-.+. ...+..++..... ...++++++=.+.
T Consensus 99 VDEasmv~---------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD---------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B---------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccC---------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99987762 1345666655543 2345666665553
No 387
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.05 E-value=0.0031 Score=62.77 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..-+.|.||+|+|||||++++++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999854
No 388
>PRK05973 replicative DNA helicase; Provisional
Probab=97.04 E-value=0.0075 Score=62.20 Aligned_cols=39 Identities=33% Similarity=0.256 Sum_probs=28.9
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGS 259 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s 259 (680)
|.....-++|.|+||+|||+|+-.++.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 33333458899999999999998887644 7777777653
No 389
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.03 E-value=0.0016 Score=65.48 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.++++||- +++.+......+.+++.++.. .+..+|.+|++++.
T Consensus 146 ~laral~~~p~llllDEP-----------t~~LD~~~~~~~~~~l~~~~~----~~~tiiivtH~~~~ 198 (214)
T cd03292 146 AIARAIVNSPTILIADEP-----------TGNLDPDTTWEIMNLLKKINK----AGTTVVVATHAKEL 198 (214)
T ss_pred HHHHHHHcCCCEEEEeCC-----------CCcCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 344455567999999995 445566667777777776531 24466677776543
No 390
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0016 Score=65.39 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..+....|.++++||- +++.+......+.+++..+.. .+..||.+|++++.
T Consensus 138 ~la~al~~~p~~lllDEP-----------~~~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~ 190 (210)
T cd03269 138 QFIAAVIHDPELLILDEP-----------FSGLDPVNVELLKDVIRELAR----AGKTVILSTHQMEL 190 (210)
T ss_pred HHHHHHhcCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHHH----CCCEEEEECCCHHH
Confidence 344455567899999995 345566666777777766532 24567777776543
No 391
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.03 E-value=0.0018 Score=64.98 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 275 SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 275 ~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
-.+..|....|.++++||- +++.+......+.+++..+.. .+..+|.+|+.++.
T Consensus 135 v~laral~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~~----~~~tii~~sH~~~~ 188 (205)
T cd03226 135 LAIAAALLSGKDLLIFDEP-----------TSGLDYKNMERVGELIRELAA----QGKAVIVITHDYEF 188 (205)
T ss_pred HHHHHHHHhCCCEEEEeCC-----------CccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 3444455667999999994 345566667777777776531 24456667776543
No 392
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.03 E-value=0.0008 Score=78.27 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRP 351 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRp 351 (680)
+.|-.+.+|.-+.|.|+++||. +++-+.+.+..+.+.+..+. .+..+|..|++++ +++
T Consensus 486 rQRi~LARall~~~~ililDEp-----------tsaLD~~t~~~i~~~l~~~~-----~~~tvI~VtHr~~-----~~~- 543 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEA-----------TSALDTESERAIQAALDELQ-----KNRTSLVIAHRLS-----TIE- 543 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHh-----CCCEEEEEecchH-----HHH-
Confidence 3455666777778999999996 34556666666666665542 2346666678763 344
Q ss_pred CccccccccC
Q 005738 352 GRFDRQITID 361 (680)
Q Consensus 352 gRfd~~I~v~ 361 (680)
.+|+.+.++
T Consensus 544 -~~D~Ii~l~ 552 (582)
T PRK11176 544 -KADEILVVE 552 (582)
T ss_pred -hCCEEEEEE
Confidence 577777775
No 393
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.03 E-value=0.003 Score=74.93 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechhhhh----hhccC------------chhHHHHHHHHHHh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSMSGSDFME----MFVGV------------GPSRVRSLFQEARQ 282 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e---~~~~~i~is~s~~~~----~~~g~------------~~~~vr~lf~~A~~ 282 (680)
+....-++|+||||||||+|+..++.. .|.+.++++..+-.. .-+|. .+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 344455889999999999999765443 366667776543211 00111 12222222222344
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 283 CAPSIVFIDEIDAIGRARGRGGFSGGN--DERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 283 ~~P~ILfIDEiD~L~~~r~~~~~~~~~--~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
..+.+|+||-+.++..+..-.+..+.. ...++.++++|..|..+....++.+|.+-
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 578999999999998532211111111 12334456666666665556677777663
No 394
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.03 E-value=0.0018 Score=65.46 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.++++||- +++.+......+.+++..+.. .+..||.+|++++.
T Consensus 148 ~laral~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~ 200 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEP-----------TGNLDPELSRDIMRLFEEFNR----RGTTVLVATHDINL 200 (216)
T ss_pred HHHHHHhcCCCEEEEeCC-----------CCcCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 344455567899999994 445566666777777776532 24466777776543
No 395
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.03 E-value=0.0044 Score=64.82 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=28.1
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
|++...-++++||||||||+||..++.+. |-+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34444558999999999999999886643 566666664
No 396
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.02 E-value=0.0015 Score=75.07 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=25.5
Q ss_pred HhhhcCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005738 217 YEELGAKIPKG--ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 217 ~~~~g~~~p~g--vLL~GppGtGKT~LAralA~e~ 249 (680)
++.+...+++| +.|+||+|+|||||++.+++..
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444455544 8899999999999999999844
No 397
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.02 E-value=0.0028 Score=58.70 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=39.7
Q ss_pred cccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 192 KDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..|.|+.-|.+.+...+.. +.++. .+.|.-+-|+|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4689999999998887765 54431 2234445589999999999999999975
No 398
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.02 E-value=0.0022 Score=64.81 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
+-.+..+....|.++++||- +++.+......+.+++..+.. . +..||.+|+..+.++
T Consensus 145 rv~laral~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~ 201 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEP-----------YANLDLEGITLVNRMISAHLR---G-GGAALVTTHGAYAAP 201 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHh---C-CCEEEEEecChhhhh
Confidence 33444555667999999995 345566666777777766532 2 345666777665543
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0018 Score=65.66 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.++++||- +++.+......+.+++.++. ...+..||.+|+.++.
T Consensus 141 ~la~al~~~p~lllLDEP-----------t~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~ 194 (220)
T cd03293 141 ALARALAVDPDVLLLDEP-----------FSALDALTREQLQEELLDIW---RETGKTVLLVTHDIDE 194 (220)
T ss_pred HHHHHHHcCCCEEEECCC-----------CCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHH
Confidence 344455567999999994 44556667777777776652 1223466667776653
No 400
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.02 E-value=0.0037 Score=62.54 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=61.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC-CC---eEEeechhh-------------------------------hhhhcc--
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG-VP---FLSMSGSDF-------------------------------MEMFVG-- 267 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~-~~---~i~is~s~~-------------------------------~~~~~g-- 267 (680)
..-+.|.||+|+|||||++.+++... .| -+.+++.++ ...+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~L 105 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGF 105 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccC
Confidence 34588999999999999999999731 01 112211110 000000
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.+..+.+-.+..+....|.++++||- +.+.+......+.++|..+.. . +..+|.+|+.++
T Consensus 106 S~G~~qrv~laral~~~p~illlDEP-----------t~~LD~~~~~~l~~~L~~~~~---~-~~tiii~sh~~~ 165 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEP-----------DSGLDIDALRLVAEVINKLRE---E-GKSVLIITHYQR 165 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCC-----------CccCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHH
Confidence 01223355667777788999999994 344556666677777766532 2 345556677654
No 401
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.02 E-value=0.002 Score=64.88 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++++++..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999854
No 402
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.02 E-value=0.0031 Score=69.21 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=46.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeec-hhhh-----------hhhccCchhHHHHHHHHHHhcCCeEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG-----VPFLSMSG-SDFM-----------EMFVGVGPSRVRSLFQEARQCAPSIV 288 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~-----~~~i~is~-s~~~-----------~~~~g~~~~~vr~lf~~A~~~~P~IL 288 (680)
..+|++||+|+||||+++++..+.. ..++.+.- .++. ..-+|........+++.+.+..|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3578999999999999999988762 33444421 1211 11122222345667788888999999
Q ss_pred EEcCc
Q 005738 289 FIDEI 293 (680)
Q Consensus 289 fIDEi 293 (680)
++.|+
T Consensus 230 ~vGEi 234 (372)
T TIGR02525 230 GVGEI 234 (372)
T ss_pred eeCCC
Confidence 99998
No 403
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.01 E-value=0.0012 Score=78.87 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
++.|-.+.+|.-..|.|+++||. +++-+...++.+.+.+.. .+..+|..|++++. ++
T Consensus 620 QrQRiaLARall~~p~iliLDEp-----------tS~LD~~te~~i~~~l~~-------~~~T~IiitHrl~~-----i~ 676 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEA-----------TSALDPETEKIIDDNLRR-------RGCTCIIVAHRLST-----IR 676 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECc-----------cccCCHHHHHHHHHHHHh-------cCCEEEEEecCHHH-----HH
Confidence 34466677777788999999996 445566666666666643 13466667887643 33
Q ss_pred CCccccccccC
Q 005738 351 PGRFDRQITID 361 (680)
Q Consensus 351 pgRfd~~I~v~ 361 (680)
.+|+.+.++
T Consensus 677 --~~D~Iivl~ 685 (710)
T TIGR03796 677 --DCDEIIVLE 685 (710)
T ss_pred --hCCEEEEEe
Confidence 466666653
No 404
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.01 E-value=0.0018 Score=65.46 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=34.5
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 277 FQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 277 f~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+..|....|.++++||- +++.+......+.+++..+.. ..+..||.+|+.++.
T Consensus 151 la~al~~~p~lllLDEP-----------~~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 203 (218)
T cd03255 151 IARALANDPKIILADEP-----------TGNLDSETGKEVMELLRELNK---EAGTTIVVVTHDPEL 203 (218)
T ss_pred HHHHHccCCCEEEEcCC-----------cccCCHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHH
Confidence 34445567899999994 345566667777777776532 234567777776554
No 405
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.01 E-value=0.00059 Score=66.90 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
++++|||||||||+|+.+|...+++. ++.++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 68999999999999999999998655 5555554
No 406
>PRK13764 ATPase; Provisional
Probab=97.00 E-value=0.0013 Score=76.21 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC---CeEEee-chhh-----hhhhccCchhHHHHHHHHHHhcCCeEEEEcCc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGV---PFLSMS-GSDF-----MEMFVGVGPSRVRSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~---~~i~is-~s~~-----~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEi 293 (680)
.+++|++|||||||||++++++..+.. .+..+. ..++ ...+... ..........+.+..|++|++||+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCC
Confidence 478999999999999999999987742 222221 1121 1111100 011233344446778999999997
No 407
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.00 E-value=0.0025 Score=63.97 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCch
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDK 346 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~ 346 (680)
.+..|....|.++++||- +.+.+......+.+++.++.. .+..||.+|+.++.++.
T Consensus 139 ~la~al~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 139 ALARLWLTRAPLWILDEP-----------FTAIDKQGVARLEALLAQHAE----QGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHhcCCCEEEEeCC-----------CccCCHHHHHHHHHHHHHHHH----CCCEEEEEecChhhhcc
Confidence 344455567999999995 334566666677777776531 23456677787665543
No 408
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.00 E-value=0.0018 Score=65.28 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999854
No 409
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.00 E-value=0.0019 Score=65.88 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.+|++||- +++.+......+.+++.++.. .+..||.+|+.++.
T Consensus 143 ~la~al~~~p~llllDEP-----------t~~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~ 195 (232)
T cd03218 143 EIARALATNPKFLLLDEP-----------FAGVDPIAVQDIQKIIKILKD----RGIGVLITDHNVRE 195 (232)
T ss_pred HHHHHHhcCCCEEEecCC-----------cccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 344455567899999994 445566677777788777632 24566777776543
No 410
>PRK13946 shikimate kinase; Provisional
Probab=97.00 E-value=0.0016 Score=64.43 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSG 258 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~ 258 (680)
.++.|+|.|+||||||++++.+|..+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 45789999999999999999999999999986653
No 411
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.99 E-value=0.0035 Score=60.67 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~ 247 (680)
++-.+|+||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999854
No 412
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00082 Score=69.23 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=33.1
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
+.+.|.-++|.|||||||||+|+.+|..+|++ .++.++++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34556778999999999999999999999865 466666653
No 413
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.99 E-value=0.0019 Score=68.95 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.+|++||- +++.+......+.+++..+.. .+..||.+|+..+.
T Consensus 132 rv~la~al~~~p~lllLDEP-----------t~gLD~~~~~~l~~~l~~~~~----~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEP-----------TTGLDPRTRRAIWDYIRALKE----EGVTILLTTHYMEE 186 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 33455566678999999994 456677777777777777632 24567778886654
No 414
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.99 E-value=0.0036 Score=76.50 Aligned_cols=142 Identities=21% Similarity=0.286 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcCCCChHHHH-HHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhc---------CC------
Q 005738 222 AKIPKGALLVGPPGTGKTLL-AKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQC---------AP------ 285 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~L-AralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~---------~P------ 285 (680)
....++++++||||+|||.| .-++-.+.-..++.+|.+.... ++..++.+ ++-... -|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~L-er~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVL-ERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHH-HhhceeeccCCeEEEccCcchhh
Confidence 33458999999999999985 5677777778888887654321 22222222 221111 11
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCCeEEEeccCCCCCCc-----hhhcCCC
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------TTAGVVVLAGTNRPDILD-----KALLRPG 352 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~~~~ViVIaaTN~~~~LD-----~aLlRpg 352 (680)
-|||.|||. |...+.- ..+..--.+.+| .+-+||- .-.++++.+++|.+.... ..++|
T Consensus 1565 lVLFcDeIn-Lp~~~~y-----~~~~vI~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEY-----YPPTVIVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred eEEEeeccC-Ccccccc-----CCCceEEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 399999998 5332211 111000011122 2233442 235689999999876522 22222
Q ss_pred ccccccccCCCCHHHHHHHHHHHhhcc
Q 005738 353 RFDRQITIDKPDIKGRDQIFQIYLKKL 379 (680)
Q Consensus 353 Rfd~~I~v~~Pd~~eR~~Il~~~l~~~ 379 (680)
| .-.+++..|.......|.+.++...
T Consensus 1636 ~-~v~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1636 K-PVFVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred C-ceEEEecCcchhhHHHHHHHHHHHH
Confidence 1 1356788999999999998877654
No 415
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.98 E-value=0.0025 Score=65.35 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.+..|....|.++++||- +++.+......+.+++..+.. ..+..+|.+|+.++.+
T Consensus 142 ~laral~~~p~llllDEP-----------~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 142 EIARALLHRPALLLLDEP-----------TVGLDPASRAAIVAHVRALCR---DQGLSVLWATHLVDEI 196 (236)
T ss_pred HHHHHHhcCCCEEEEcCC-----------ccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEecChhhH
Confidence 444555667999999995 345566666667777666521 2234566677766544
No 416
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.98 E-value=0.0014 Score=70.60 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEee-chhhhhh------hccCchhHHHHHHHHHHhcCCeEEEEcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMS-GSDFMEM------FVGVGPSRVRSLFQEARQCAPSIVFIDE 292 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is-~s~~~~~------~~g~~~~~vr~lf~~A~~~~P~ILfIDE 292 (680)
.++++++|++|+||||+++++.... +..++.+. ..++.-. +.....-...++++.+.+..|+.|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999875 22344332 1222110 1111223467788889999999999999
Q ss_pred c
Q 005738 293 I 293 (680)
Q Consensus 293 i 293 (680)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 417
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.98 E-value=0.0015 Score=70.47 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEee-chhhhh---h---hccCchhHHHHHHHHHHhcCCeEEEEcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMS-GSDFME---M---FVGVGPSRVRSLFQEARQCAPSIVFIDE 292 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is-~s~~~~---~---~~g~~~~~vr~lf~~A~~~~P~ILfIDE 292 (680)
.++++++|++|+|||+++++++.+. ...++.+. ..++.- . +.....-...++++.+.+..|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4689999999999999999999863 12233322 112110 0 1111223467889999999999999999
Q ss_pred c
Q 005738 293 I 293 (680)
Q Consensus 293 i 293 (680)
+
T Consensus 228 i 228 (319)
T PRK13894 228 V 228 (319)
T ss_pred c
Confidence 8
No 418
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00064 Score=64.25 Aligned_cols=33 Identities=36% Similarity=0.687 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
..++|++|-||||||+++..+|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 357999999999999999999999999887664
No 419
>PRK13949 shikimate kinase; Provisional
Probab=96.97 E-value=0.00069 Score=66.20 Aligned_cols=32 Identities=44% Similarity=0.632 Sum_probs=29.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
+.++|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999998766
No 420
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.97 E-value=0.0034 Score=62.15 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++++++..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999843
No 421
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.96 E-value=0.0017 Score=65.66 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.+|++||- +++.+......+.++|..+.. .+..||.+|++++.
T Consensus 146 ~laral~~~p~illlDEP-----------t~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 198 (218)
T cd03266 146 AIARALVHDPPVLLLDEP-----------TTGLDVMATRALREFIRQLRA----LGKCILFSTHIMQE 198 (218)
T ss_pred HHHHHHhcCCCEEEEcCC-----------CcCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 344455567999999995 345566667777777776531 24466667776543
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0097 Score=66.01 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhh-------hhh---ccC---chhHHHHHHHHHHhcCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFM-------EMF---VGV---GPSRVRSLFQEARQCAPSI 287 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~-------~~~---~g~---~~~~vr~lf~~A~~~~P~I 287 (680)
+.-++|+||+|+||||++..+|... |..+..+++..+. ..| .|. ....+..+...+.....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4558899999999999999999754 3344444433221 111 111 1122334444444445678
Q ss_pred EEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhh
Q 005738 288 VFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKAL 348 (680)
Q Consensus 288 LfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aL 348 (680)
|+||=.-.. ..+...-..+..++.......+...++|+.+|...+.+....
T Consensus 303 VLIDTaGr~----------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 303 ILIDTAGYS----------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEeCCCCC----------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 888853111 112222222333332222112234567777777665554443
No 423
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.96 E-value=0.0016 Score=77.43 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
++.|-.+.+|.-..|.|+++||. +++-+...++.+.+.+..++ ..+|..|++++. ++
T Consensus 593 QrQRialARAll~~p~iLiLDEp-----------TS~LD~~te~~i~~~L~~~~-------~T~IiItHr~~~-----i~ 649 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEA-----------TSALDNRTQAIVSESLERLK-------VTRIVIAHRLST-----IR 649 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHhC-------CeEEEEecChHH-----HH
Confidence 34466677777788999999996 44556666666666665541 366777787643 33
Q ss_pred CCcccccccc
Q 005738 351 PGRFDRQITI 360 (680)
Q Consensus 351 pgRfd~~I~v 360 (680)
.+|+.+.+
T Consensus 650 --~~D~Iivl 657 (686)
T TIGR03797 650 --NADRIYVL 657 (686)
T ss_pred --cCCEEEEE
Confidence 46665555
No 424
>PRK04328 hypothetical protein; Provisional
Probab=96.96 E-value=0.0067 Score=63.05 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=28.1
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e---~~~~~i~is~ 258 (680)
|++....+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4444566899999999999998876643 2667666664
No 425
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0021 Score=69.30 Aligned_cols=27 Identities=41% Similarity=0.725 Sum_probs=22.4
Q ss_pred CCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005738 222 AKIPKG--ALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 222 ~~~p~g--vLL~GppGtGKT~LAralA~e 248 (680)
..+..| +.|.||+||||||+.|.||+-
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444 789999999999999999983
No 426
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.95 E-value=0.0022 Score=64.59 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.++++||- +++-+......+.+++.++.. .+..||.+|++++.
T Consensus 147 ~la~al~~~p~lllLDEP-----------t~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 199 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEP-----------TGNLDPDLSERILDLLKRLNK----RGTTVIVATHDLSL 199 (214)
T ss_pred HHHHHHhCCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 344445567899999995 345566667777777776532 23466667776543
No 427
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.002 Score=64.86 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.||+|+|||||++++++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 428
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.94 E-value=0.0013 Score=71.24 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeec-hhhhh-----------hh--ccCchhHHHHHHHHHHhcCCeE
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGV--PFLSMSG-SDFME-----------MF--VGVGPSRVRSLFQEARQCAPSI 287 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~-s~~~~-----------~~--~g~~~~~vr~lf~~A~~~~P~I 287 (680)
..++++++|++||||||+++++.....- .++.+.- .++.- .- .|...-...++++.+.+..|+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 3578999999999999999999987632 2333211 11110 00 1112234678899999999999
Q ss_pred EEEcCc
Q 005738 288 VFIDEI 293 (680)
Q Consensus 288 LfIDEi 293 (680)
|++.|+
T Consensus 239 IivGEi 244 (332)
T PRK13900 239 IIVGEL 244 (332)
T ss_pred EEEEec
Confidence 999998
No 429
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.00076 Score=66.54 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
-|+|.|+||+||||+|++++..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987665
No 430
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.94 E-value=0.0076 Score=61.31 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=60.9
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh--------------hccC-------ch------
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--------------FVGV-------GP------ 270 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--------------~~g~-------~~------ 270 (680)
|.+...-++|.|+||+|||+++..++.+. +.+.++++..+-.+. +.+. ..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 44444558899999999999999887543 667777765332111 0000 00
Q ss_pred -hHHH-HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 271 -SRVR-SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 271 -~~vr-~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
..+. .+.....+..++.++||-+..+-.. ..........+..++..+. ..++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~------~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL------FDDDAERRTELFRFYSSLR----ETGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh------cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEc
Confidence 0111 1122234456789999998877221 1223344556667776664 23455555554
No 431
>PRK14532 adenylate kinase; Provisional
Probab=96.93 E-value=0.00077 Score=66.59 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.++|.|||||||||+|+.+|+..|.+++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555443
No 432
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.93 E-value=0.0025 Score=64.10 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 277 FQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 277 f~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+..|....|.++++||- +++.+......+.+++.++.. . +..||.+|+.++.
T Consensus 145 laral~~~p~llllDEP-----------t~~LD~~~~~~~~~~l~~~~~---~-~~tvi~~sH~~~~ 196 (211)
T cd03225 145 IAGVLAMDPDILLLDEP-----------TAGLDPAGRRELLELLKKLKA---E-GKTIIIVTHDLDL 196 (211)
T ss_pred HHHHHhcCCCEEEEcCC-----------cccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHH
Confidence 44445567899999995 445566677777777776532 2 4567777776543
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.93 E-value=0.00086 Score=65.64 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=31.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
+-++|+|+||+||||+|++++..++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 45899999999999999999999988887766555543
No 434
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0028 Score=63.10 Aligned_cols=22 Identities=50% Similarity=0.687 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005738 228 ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~ 249 (680)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 6899999999999999999987
No 435
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.92 E-value=0.0023 Score=68.55 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|-.+..|..+.|.+|++||- +++.+......+.+++.++. ..+..||.+|+..+.+
T Consensus 146 rl~la~aL~~~P~lllLDEP-----------t~gLD~~~~~~l~~~l~~l~----~~g~till~sH~l~e~ 201 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEP-----------TTGLDPQARHLMWERLRSLL----ARGKTILLTTHFMEEA 201 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHH
Confidence 33455566678999999994 45667777778888887763 2356777788876543
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.91 E-value=0.0008 Score=63.08 Aligned_cols=30 Identities=37% Similarity=0.680 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
+.|+|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999998776
No 437
>PRK14531 adenylate kinase; Provisional
Probab=96.90 E-value=0.00096 Score=65.87 Aligned_cols=31 Identities=35% Similarity=0.600 Sum_probs=27.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.-++++||||+||||+++.+|...|++++++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999998876543
No 438
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.90 E-value=0.0024 Score=65.17 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++++++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999854
No 439
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.89 E-value=0.0045 Score=66.67 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=65.4
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhh------hhh--hccCch-------------
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSDF------MEM--FVGVGP------------- 270 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~~------~~~--~~g~~~------------- 270 (680)
|++...-++|+||||||||+++..+|..+ +...++++..+- .+. -.|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34445568899999999999999998653 336777776441 000 011100
Q ss_pred --h----HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 271 --S----RVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 271 --~----~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
. .+..+...... ..+++|+||=|-++.+..-.+ .+...++++.+.+++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0 01112222223 456799999999886542111 0112234555666666555544556677777654
No 440
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.88 E-value=0.0011 Score=68.16 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
.|.-++|.||||+||||+|+.+|+.++++++++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4556999999999999999999999998876553
No 441
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0027 Score=64.94 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+.|.||+|+|||||++++++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999854
No 442
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.88 E-value=0.0023 Score=65.03 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=35.3
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.+..|....|.++++||- +++.+......+.++|..+.. .+..||.+|+.++.+
T Consensus 134 ~laral~~~p~llllDEP-----------~~~LD~~~~~~l~~~L~~~~~----~~~tiii~sH~~~~~ 187 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEP-----------TNGLDPIGIQELRELIRSFPE----QGITVILSSHILSEV 187 (223)
T ss_pred HHHHHHhcCCCEEEECCC-----------ccCCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHH
Confidence 344455667999999994 345566667777777776532 244666777766543
No 443
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0028 Score=69.39 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+...+..+..++..+. ...+..+|.+|+.++
T Consensus 142 RvalARAL~~~P~llLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tii~vTHd~~ 196 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEP-----------LSNLDAKLRVQMRLEIQRLH---RRLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 44556666778999999994 34556566666666665542 233567777787654
No 444
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.87 E-value=0.0042 Score=66.78 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh-hh-h----h--hccCc---------------
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSD-FM-E----M--FVGVG--------------- 269 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~-~~-~----~--~~g~~--------------- 269 (680)
+....-+.|+||||||||+|+..+|-.+ +...++++... |. + . -.|..
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 3333457899999999999998877422 34667776533 10 0 0 00111
Q ss_pred -hhH---HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 270 -PSR---VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 270 -~~~---vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
+.. +..+........+.+|+||-|-++.+..-.+ .+.-.++++.+.+++..|..+....++.|+.+.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 111 1122222234568899999999887542111 112234445566766666655555667776653
No 445
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0049 Score=61.81 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=59.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeechhh--------------------h------hh----------
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG-----VPFLSMSGSDF--------------------M------EM---------- 264 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~-----~~~i~is~s~~--------------------~------~~---------- 264 (680)
.-+.|.||+|+|||||++.+++... ---+.+++.+. . +.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 113 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN 113 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhccc
Confidence 4578999999999999999998643 00111111100 0 00
Q ss_pred -hcc--CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 265 -FVG--VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 265 -~~g--~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.+. .+..+.+-.+..|....|.++++||- +++.+...++.+.+++.++.. .....+||.+++..
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~p~llllDEP-----------t~~LD~~~~~~~~~~l~~~~~--~~~~t~ii~~~h~~ 180 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNS-----------TRGLDSSTALEILKCIRTMAD--VLKTTTFVSLYQAS 180 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC-----------CccCCHHHHHHHHHHHHHHHH--hCCCEEEEEEcCCH
Confidence 000 01122344566677778999999994 345566667777777776532 11334566666643
No 446
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.87 E-value=0.013 Score=71.62 Aligned_cols=151 Identities=24% Similarity=0.242 Sum_probs=81.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeech--h-----hhhh----h----ccC-----------c----hhHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGS--D-----FMEM----F----VGV-----------G----PSRVRS 275 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s--~-----~~~~----~----~g~-----------~----~~~vr~ 275 (680)
+-++|+||+|.|||+++...+...+ ++..++.. + |... + .+. + ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887766 66655542 1 1111 0 010 0 011223
Q ss_pred HHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc-hhhcCCCc
Q 005738 276 LFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD-KALLRPGR 353 (680)
Q Consensus 276 lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD-~aLlRpgR 353 (680)
++..... ..|.+|+|||+|.+. +......+..|+..+ ..++.+|.++.....++ ..+...+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~~- 174 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVRD- 174 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhcC-
Confidence 3333332 578999999998871 223344566666543 23333333454321221 1111111
Q ss_pred cccccccC----CCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCC
Q 005738 354 FDRQITID----KPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFA 400 (680)
Q Consensus 354 fd~~I~v~----~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~s 400 (680)
..+.+. ..+.++-.+++...+.. ..+. .....+...|.|..
T Consensus 175 --~~~~l~~~~l~f~~~e~~~ll~~~~~~---~~~~-~~~~~l~~~t~Gwp 219 (903)
T PRK04841 175 --QLLEIGSQQLAFDHQEAQQFFDQRLSS---PIEA-AESSRLCDDVEGWA 219 (903)
T ss_pred --cceecCHHhCCCCHHHHHHHHHhccCC---CCCH-HHHHHHHHHhCChH
Confidence 223344 55778888877655432 1222 22467888888865
No 447
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0031 Score=63.97 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.++++||- +++.+......+.+++.++. .+.+..||.+|+.++.
T Consensus 141 ~la~al~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~---~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 141 EIARSLVHRPEVLFLDEP-----------TIGLDPQTRAHVWEYIEKLK---EEFGMTILLTTHYMEE 194 (220)
T ss_pred HHHHHHhcCCCEEEEcCC-----------ccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 444455667899999995 34556666677777776653 2224456667776553
No 448
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.86 E-value=0.0056 Score=63.44 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
|+|+|+||+||||+|+.++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999877 566777765444
No 449
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.86 E-value=0.0017 Score=71.65 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.++++||- +++.+...+..+..+|..+.. ..++.+|.+|+.++.
T Consensus 152 RVaLARaL~~~P~llLLDEP-----------~s~LD~~~r~~l~~~L~~l~~---~~g~tiI~vTHd~~e 207 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDES-----------LSALDYKLRKQMQNELKALQR---KLGITFVFVTHDQEE 207 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------CCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 44556666778999999994 345555556666666655432 234566777776543
No 450
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.86 E-value=0.0043 Score=62.08 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
+-.+..|....|.++++||- +++.+....+.+.+++.++. . .+..+|.+|+++..+.
T Consensus 133 rl~laral~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~---~-~g~tiii~sH~~~~~~ 189 (201)
T cd03231 133 RVALARLLLSGRPLWILDEP-----------TTALDKAGVARFAEAMAGHC---A-RGGMVVLTTHQDLGLS 189 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------CCCCCHHHHHHHHHHHHHHH---h-CCCEEEEEecCchhhh
Confidence 33455556667999999995 34556666667777776542 1 2345666777665443
No 451
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.00085 Score=64.36 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
+-+.|||||||||+|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5689999999999999999999999975
No 452
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.86 E-value=0.0059 Score=65.44 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=65.1
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh-hh-----hh--hccCch-------------
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSD-FM-----EM--FVGVGP------------- 270 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~-~~-----~~--~~g~~~------------- 270 (680)
|+....-++|+||||||||+|+..+|..+ +...++++..+ |. +. ..|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34444557899999999999999998653 23677777644 11 00 011110
Q ss_pred ---h---HHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 271 ---S---RVRSLFQEARQC--APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 271 ---~---~vr~lf~~A~~~--~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
. .+..+....... .+++|+||-|-++.+..-.+ .+...++++.+++++..+..+....++.|+.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 012222233333 36799999998875542111 0112234455666666555554556677776643
No 453
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.85 E-value=0.0033 Score=65.36 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+-.+..|....|.++++||- +++.+......+.++|..+.. ..+..||.+|+.++.
T Consensus 128 rv~laral~~~p~lllLDEP-----------t~~LD~~~~~~l~~~L~~~~~---~~g~tiiivsH~~~~ 183 (251)
T PRK09544 128 RVLLARALLNRPQLLVLDEP-----------TQGVDVNGQVALYDLIDQLRR---ELDCAVLMVSHDLHL 183 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHH
Confidence 44455566678999999995 345566666677777766521 223456667776543
No 454
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.85 E-value=0.003 Score=64.48 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 277 FQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 277 f~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+..+....|.++++||- +++.+......+.++|.++.. ..+..+|.+|+.++.
T Consensus 142 la~al~~~p~illlDEP-----------t~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 142 IARALVTRPKLLLLDEP-----------TEGIQPSIIKDIGRVIRRLRA---EGGMAILLVEQYLDF 194 (230)
T ss_pred HHHHHhcCCCEEEecCC-----------cccCCHHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHH
Confidence 34445567899999995 345566667777787776532 224566667776543
No 455
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.85 E-value=0.003 Score=63.44 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 447899999999999999999853
No 456
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.0019 Score=66.91 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=27.5
Q ss_pred HhhhcCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005738 217 YEELGAKIPKG--ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 217 ~~~~g~~~p~g--vLL~GppGtGKT~LAralA~e~ 249 (680)
.+.+...+|+| +.+.||.|.||||+.|.+.+..
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 44567788888 7789999999999999998743
No 457
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.85 E-value=0.0031 Score=63.82 Aligned_cols=23 Identities=39% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.||+|+|||||++++++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 458
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.84 E-value=0.0021 Score=69.02 Aligned_cols=72 Identities=19% Similarity=0.399 Sum_probs=47.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeec-hhhh-------hhh-----ccCchhHHHHHHHHHHhcCCe
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSMSG-SDFM-------EMF-----VGVGPSRVRSLFQEARQCAPS 286 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~-s~~~-------~~~-----~g~~~~~vr~lf~~A~~~~P~ 286 (680)
.+...+++++||+|+||||+++++++.... ..+.+.. .++. ... .+...-.+.+++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 444578999999999999999999987632 2222211 1110 000 011123457788888899999
Q ss_pred EEEEcCc
Q 005738 287 IVFIDEI 293 (680)
Q Consensus 287 ILfIDEi 293 (680)
+|++||+
T Consensus 221 ~ii~gE~ 227 (308)
T TIGR02788 221 RIILGEL 227 (308)
T ss_pred eEEEecc
Confidence 9999998
No 459
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0088 Score=61.71 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC--C-eEEeec--hhhh-----hhhccC--chh-------H----HHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGV--P-FLSMSG--SDFM-----EMFVGV--GPS-------R----VRSLFQE 279 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~--~-~i~is~--s~~~-----~~~~g~--~~~-------~----vr~lf~~ 279 (680)
..|-.+.+.|++|||||++++.+.....- . ++.+.. .... ..++.. ... + +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34557899999999999999999876532 1 222211 1111 111111 000 0 1111111
Q ss_pred HHh---cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCcccc
Q 005738 280 ARQ---CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDR 356 (680)
Q Consensus 280 A~~---~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~ 356 (680)
... ..+++|++|++-. .....+.+.+++.. ...-++-+|..+.....|++.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999999621 11233456666642 244568888888888999999866 5666
Q ss_pred ccccCCCCHHHHHHHHHHH
Q 005738 357 QITIDKPDIKGRDQIFQIY 375 (680)
Q Consensus 357 ~I~v~~Pd~~eR~~Il~~~ 375 (680)
.+.+. -+..+..-|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66554 4555554444443
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.83 E-value=0.001 Score=63.14 Aligned_cols=32 Identities=38% Similarity=0.756 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
++|+|+||+||||+|+.++...+.+++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 461
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.83 E-value=0.0015 Score=70.92 Aligned_cols=72 Identities=21% Similarity=0.436 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeec-hhhh-------hh-h----ccCchhHHHHHHHHHHhcCCe
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSMSG-SDFM-------EM-F----VGVGPSRVRSLFQEARQCAPS 286 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~-s~~~-------~~-~----~g~~~~~vr~lf~~A~~~~P~ 286 (680)
.+..+++|++||+|+||||+++++++.... .++.+.. .++. .. + .+...-...+++..+.+..|+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 344578999999999999999999987632 2333211 1111 00 0 112223466788899999999
Q ss_pred EEEEcCc
Q 005738 287 IVFIDEI 293 (680)
Q Consensus 287 ILfIDEi 293 (680)
.|++.|+
T Consensus 239 ~IivGEi 245 (344)
T PRK13851 239 RILLGEM 245 (344)
T ss_pred eEEEEee
Confidence 9999997
No 462
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.83 E-value=0.001 Score=65.70 Aligned_cols=33 Identities=42% Similarity=0.775 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
|+|+||||+|||++|+.+|...+++++. ..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 7899999999999999999999877654 44444
No 463
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.82 E-value=0.0053 Score=61.18 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999854
No 464
>PRK10908 cell division protein FtsE; Provisional
Probab=96.81 E-value=0.0034 Score=63.69 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++++++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999854
No 465
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.81 E-value=0.0037 Score=59.69 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=29.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM 262 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~ 262 (680)
++|+|+||+|||++|+.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999988 6677777765554
No 466
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.0072 Score=63.51 Aligned_cols=113 Identities=21% Similarity=0.359 Sum_probs=68.4
Q ss_pred CCe-EEEEcCCCChHHHHHHHHHHhcCC----CeEEee---------chhhh-hhhccCchhHHHHHHHHHHhcCCeEEE
Q 005738 225 PKG-ALLVGPPGTGKTLLAKATAGESGV----PFLSMS---------GSDFM-EMFVGVGPSRVRSLFQEARQCAPSIVF 289 (680)
Q Consensus 225 p~g-vLL~GppGtGKT~LAralA~e~~~----~~i~is---------~s~~~-~~~~g~~~~~vr~lf~~A~~~~P~ILf 289 (680)
|+| ||++||.||||||..-++-.+.+. +++.+. -..++ ..-+|..-....+.++.|.+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 556 677899999999988888776643 333332 11222 223444444556667777888999999
Q ss_pred EcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHH
Q 005738 290 IDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIK 366 (680)
Q Consensus 290 IDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~ 366 (680)
+=|+-.+ .++..-|.. ...+-+|++|-+..+ |... .||.|.+-++..+
T Consensus 204 vGEmRD~-----------------ETi~~ALtA-----AETGHLV~~TLHT~s----A~~t---i~RiidvFp~~ek 251 (353)
T COG2805 204 VGEMRDL-----------------ETIRLALTA-----AETGHLVFGTLHTNS----AAKT---IDRIIDVFPAEEK 251 (353)
T ss_pred EeccccH-----------------HHHHHHHHH-----HhcCCEEEEeccccc----HHHH---HHHHHHhCChhhh
Confidence 9997322 355555554 345668888854322 3322 4555666555443
No 467
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0037 Score=68.30 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|||||||.+.||+..
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 347899999999999999999843
No 468
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.79 E-value=0.0018 Score=65.01 Aligned_cols=132 Identities=23% Similarity=0.333 Sum_probs=61.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh-hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM-FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFS 306 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~-~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~ 306 (680)
.+|+||+|||||.+|-++|+..|.|++..+.-..... .+|.+.... +....-.=+|+||-..-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~------~el~~~~RiyL~~r~l~---------- 67 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP------SELKGTRRIYLDDRPLS---------- 67 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S------GGGTT-EEEES----GG----------
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH------HHHcccceeeecccccc----------
Confidence 5899999999999999999999999999887654433 233321111 11111123788874221
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC-----chhhcCCCccccccccCCCCHHHHHHHHHHHhhc
Q 005738 307 GGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL-----DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 307 ~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L-----D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
.+.-...+....|+..++......++|+=+.+. ..| |+-...+.+. ....++.|+.+.-..-.+...++
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w-~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRW-HIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEE-EEEE-----HHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeE-EEEEEECCChHHHHHHHHHHHHH
Confidence 223334456667777777777755555555443 111 1111121122 34456788876555444444444
No 469
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.79 E-value=0.0025 Score=61.90 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRP 351 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRp 351 (680)
+.|-.+.+|....|.|+|-||= ++..+...-..+..|+-.+. ...+..+|..|+ ||.|--
T Consensus 152 QQRVAiARAfa~~P~vLfADEP-----------TGNLD~~Tg~~iaDLlF~ln---re~G~TlVlVTH-----D~~LA~- 211 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEP-----------TGNLDRATGDKIADLLFALN---RERGTTLVLVTH-----DPQLAA- 211 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCC-----------CCCcchhHHHHHHHHHHHHh---hhcCceEEEEeC-----CHHHHH-
Confidence 3466778888889999999993 22333344445555554443 233445555566 566655
Q ss_pred CccccccccC
Q 005738 352 GRFDRQITID 361 (680)
Q Consensus 352 gRfd~~I~v~ 361 (680)
|++|++.+.
T Consensus 212 -Rc~R~~r~~ 220 (228)
T COG4181 212 -RCDRQLRLR 220 (228)
T ss_pred -hhhheeeee
Confidence 898888764
No 470
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0033 Score=65.65 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=21.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999999854
No 471
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0031 Score=65.71 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++++++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999854
No 472
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.79 E-value=0.0022 Score=74.93 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
++.|-.+.+|.-..|.|+++||. +++-+.+.++.+.+.+..+. .+..+|..|++++. ++
T Consensus 481 qrQRialARaLl~~~~illlDEp-----------ts~LD~~t~~~i~~~l~~~~-----~~~tvIivtHr~~~-----l~ 539 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEA-----------TANIDSGTEQAIQQALAAVR-----EHTTLVVIAHRLST-----IV 539 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHh-----CCCEEEEEecchHH-----HH
Confidence 34455677777778899999995 44556666677766665542 23466677887633 33
Q ss_pred CCccccccccC
Q 005738 351 PGRFDRQITID 361 (680)
Q Consensus 351 pgRfd~~I~v~ 361 (680)
++|+.+.+.
T Consensus 540 --~~D~ii~l~ 548 (592)
T PRK10790 540 --EADTILVLH 548 (592)
T ss_pred --hCCEEEEEE
Confidence 466666653
No 473
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0035 Score=69.14 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|||||||.++||+..
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 447899999999999999999843
No 474
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.78 E-value=0.002 Score=76.73 Aligned_cols=67 Identities=25% Similarity=0.307 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
++.|-.+.+|.-..|.|+++||. +++-+.+.++.+.+.+..+. .+..+|..|++++. ++
T Consensus 606 QrQRlalARall~~p~iliLDE~-----------Ts~LD~~te~~i~~~l~~~~-----~~~T~iiItHrl~~-----~~ 664 (694)
T TIGR03375 606 QRQAVALARALLRDPPILLLDEP-----------TSAMDNRSEERFKDRLKRWL-----AGKTLVLVTHRTSL-----LD 664 (694)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC-----------CCCCCHHHHHHHHHHHHHHh-----CCCEEEEEecCHHH-----HH
Confidence 34455677777788999999996 45567777777777776542 13456666787653 23
Q ss_pred CCcccccccc
Q 005738 351 PGRFDRQITI 360 (680)
Q Consensus 351 pgRfd~~I~v 360 (680)
.+|+.+.+
T Consensus 665 --~~D~iivl 672 (694)
T TIGR03375 665 --LVDRIIVM 672 (694)
T ss_pred --hCCEEEEE
Confidence 46666655
No 475
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.78 E-value=0.004 Score=63.02 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..+....|.++++||- +++.+......+.+++..+.. ..+..||.+|++++.
T Consensus 151 ~laral~~~p~illlDEP-----------t~~LD~~~~~~l~~~l~~~~~---~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 151 AIARALVNQPSLVLADEP-----------TGNLDNNNAKIIFDLMLELNR---ELNTSFLVVTHDLEL 204 (221)
T ss_pred HHHHHHhCCCCEEEEeCC-----------CCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 344445567899999994 445566666777777766531 223466777776543
No 476
>PHA02774 E1; Provisional
Probab=96.77 E-value=0.0046 Score=70.66 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEE-eec
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLS-MSG 258 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~-is~ 258 (680)
.+++|+||||||||+||.+|++.++...+. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 479999999999999999999998655543 543
No 477
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.77 E-value=0.0037 Score=68.41 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.++++||- +++.+...+..+.++|..+. ...++.+|.+|+.++.
T Consensus 142 RvaLARaL~~~P~llLLDEP-----------~s~LD~~~r~~l~~~L~~l~---~~~~~tvi~vTHd~~e 197 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEP-----------LSALDARVREHLRTEIRQLQ---RRLGVTTIMVTHDQEE 197 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCC-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEcCCHHH
Confidence 44555666778999999994 34455555566666665542 2334566777776553
No 478
>PRK10867 signal recognition particle protein; Provisional
Probab=96.77 E-value=0.024 Score=63.57 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhhhh----------------hc---c-CchhHHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFMEM----------------FV---G-VGPSRVRSLFQ 278 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~~~----------------~~---g-~~~~~vr~lf~ 278 (680)
..|.-++++||+|+||||++..+|..+ |..+..+++..+... +. + ......+....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777777643 566666666432210 11 1 11222334555
Q ss_pred HHHhcCCeEEEEcCc
Q 005738 279 EARQCAPSIVFIDEI 293 (680)
Q Consensus 279 ~A~~~~P~ILfIDEi 293 (680)
.++.....+|+||=.
T Consensus 178 ~a~~~~~DvVIIDTa 192 (433)
T PRK10867 178 EAKENGYDVVIVDTA 192 (433)
T ss_pred HHHhcCCCEEEEeCC
Confidence 666666789999875
No 479
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.77 E-value=0.0011 Score=63.91 Aligned_cols=27 Identities=37% Similarity=0.616 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
++|+|||||||||+|+.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999987665
No 480
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0038 Score=61.85 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
..-+.+.||+|||||||.+.+|+-
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcC
Confidence 345889999999999999999983
No 481
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0029 Score=66.39 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.+..+....|.+|++||- +++.+......+.++|..+.. . +..||.+|+.++.+
T Consensus 146 ~laraL~~~p~lllLDEP-----------t~~LD~~~~~~l~~~l~~~~~---~-g~tii~vtH~~~~~ 199 (271)
T PRK13638 146 AIAGALVLQARYLLLDEP-----------TAGLDPAGRTQMIAIIRRIVA---Q-GNHVIISSHDIDLI 199 (271)
T ss_pred HHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 344455567999999995 345566666777777776532 2 34566677765543
No 482
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.76 E-value=0.0026 Score=74.20 Aligned_cols=67 Identities=27% Similarity=0.303 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRP 351 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRp 351 (680)
+.|-.+.+|.-+.|.|+++||. +++-+...+..+.+.+..+. .+..+|..|++++ .++
T Consensus 477 ~QRialARall~~~~iliLDEp-----------ts~LD~~t~~~i~~~l~~~~-----~~~tvIiitHr~~-----~~~- 534 (588)
T PRK13657 477 RQRLAIARALLKDPPILILDEA-----------TSALDVETEAKVKAALDELM-----KGRTTFIIAHRLS-----TVR- 534 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHh-----cCCEEEEEEecHH-----HHH-
Confidence 4455667777788999999996 34556666666666665432 2346666777653 344
Q ss_pred CccccccccC
Q 005738 352 GRFDRQITID 361 (680)
Q Consensus 352 gRfd~~I~v~ 361 (680)
.+|+.+.+.
T Consensus 535 -~~D~ii~l~ 543 (588)
T PRK13657 535 -NADRILVFD 543 (588)
T ss_pred -hCCEEEEEE
Confidence 577766663
No 483
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.76 E-value=0.0055 Score=61.28 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999854
No 484
>PRK06547 hypothetical protein; Provisional
Probab=96.75 E-value=0.0015 Score=64.01 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
..+.-+++.|++|||||++|+.+++.++++++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34667889999999999999999999988877553
No 485
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0034 Score=64.64 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 447899999999999999999853
No 486
>PRK14530 adenylate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=66.59 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.++|.||||+||||+++.+|+.++++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877644
No 487
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0054 Score=64.36 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=23.7
Q ss_pred hcCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005738 220 LGAKIPKG--ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 220 ~g~~~p~g--vLL~GppGtGKT~LAralA~e~ 249 (680)
....++.| +.|.||+|+|||||++.+++..
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33344444 7899999999999999999964
No 488
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.0043 Score=64.34 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.||+|+|||||++.+++..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 489
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.75 E-value=0.0043 Score=62.28 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..+....|.++++||- +++.+......+.++|..+. . +..+|.+|+.++.
T Consensus 133 rv~laral~~~p~llllDEP-----------~~~LD~~~~~~l~~~l~~~~----~-~~tiii~th~~~~ 186 (207)
T cd03369 133 LLCLARALLKRPRVLVLDEA-----------TASIDYATDALIQKTIREEF----T-NSTILTIAHRLRT 186 (207)
T ss_pred HHHHHHHHhhCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEeCCHHH
Confidence 44556666678999999995 33455566666777776642 2 3456667776554
No 490
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.74 E-value=0.0045 Score=67.29 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechh-h-----hhh--hccCch--------------
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSD-F-----MEM--FVGVGP-------------- 270 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~-~-----~~~--~~g~~~-------------- 270 (680)
+..-.-..|+||||||||+|+..+|-.+ +...++++... | ... .+|...
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 3333447799999999999999887432 24566776533 1 110 011110
Q ss_pred -h----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 271 -S----RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 271 -~----~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
. .+..+-.......+++|+||-|-++.+..-.+ .+...++++.+.+++..|..+....++.||.+.
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1 11122222334568899999999886542111 111234556677777666555455666776653
No 491
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.74 E-value=0.0038 Score=66.75 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=35.8
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.+|++||- +++.+......+.+++..+.. .+..||.+|+.++.
T Consensus 145 ~la~al~~~p~lllLDEP-----------t~gLD~~~~~~l~~~l~~~~~----~g~til~~sH~~~~ 197 (303)
T TIGR01288 145 TLARALINDPQLLILDEP-----------TTGLDPHARHLIWERLRSLLA----RGKTILLTTHFMEE 197 (303)
T ss_pred HHHHHHhcCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 344455667999999994 445666677777777776532 24567777876654
No 492
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0047 Score=62.15 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+..|....|.++++||- +++.+......+.+++..+.. . ..||.+|+.++.
T Consensus 140 ~la~al~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~~----~-~tii~vsH~~~~ 191 (211)
T cd03264 140 GIAQALVGDPSILIVDEP-----------TAGLDPEERIRFRNLLSELGE----D-RIVILSTHIVED 191 (211)
T ss_pred HHHHHHhcCCCEEEEcCC-----------cccCCHHHHHHHHHHHHHHhC----C-CEEEEEcCCHHH
Confidence 344455567899999994 345566667777777777632 2 456667776543
No 493
>PRK13695 putative NTPase; Provisional
Probab=96.74 E-value=0.012 Score=57.56 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005738 228 ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~ 249 (680)
++|+|++|+|||||++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988765
No 494
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.0086 Score=60.41 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~ 247 (680)
+-++|+||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 495
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0039 Score=65.46 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=24.5
Q ss_pred hhhcCCCCC--eEEEEcCCCChHHHHHHHHHHhc
Q 005738 218 EELGAKIPK--GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 218 ~~~g~~~p~--gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+.+.++. -+.|.||+|+|||||++++++..
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333444444 48899999999999999999854
No 496
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.73 E-value=0.0042 Score=62.91 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=20.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999843
No 497
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.72 E-value=0.0059 Score=62.23 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++++++..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 447899999999999999999853
No 498
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0036 Score=68.20 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.+|++||- +++.+......+.++|..+. ...+..||.+|+..+.
T Consensus 148 Rv~lAraL~~~p~iLlLDEP-----------ts~LD~~~~~~l~~~L~~l~---~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEA-----------TSALDPATTRSILELLKDIN---RELGLTIVLITHEMDV 203 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 33455566678999999995 44566667777777777653 2234567777876553
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.72 E-value=0.0045 Score=63.61 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=34.5
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 277 FQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 277 f~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+..+....|.++++||- +++.+......+.+++.++. ...+..||.+|+.++.
T Consensus 164 la~al~~~p~llllDEP-----------t~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 216 (236)
T cd03267 164 IAAALLHEPEILFLDEP-----------TIGLDVVAQENIRNFLKEYN---RERGTTVLLTSHYMKD 216 (236)
T ss_pred HHHHHhcCCCEEEEcCC-----------CCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHH
Confidence 44455567999999995 34556667777777777653 2224466677776553
No 500
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0039 Score=68.64 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.+|++||- +++.+......+..+|..+. ...+..+|.+|+.++.
T Consensus 141 RvaLAraL~~~P~lLLLDEP-----------ts~LD~~~~~~l~~~L~~l~---~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEP-----------LSNLDAALRVQMRIEISRLH---KRLGRTMIYVTHDQVE 196 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HHhCCEEEEEeCCHHH
Confidence 44455566678999999994 34455566666666665542 1224566777776553
Done!