Query 005738
Match_columns 680
No_of_seqs 605 out of 4005
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.4E-88 4.9E-93 757.7 42.2 457 186-647 10-473 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.7E-86 5.7E-91 745.0 42.2 459 167-633 8-471 (499)
3 4b4t_J 26S protease regulatory 100.0 1.4E-52 4.7E-57 455.3 26.9 251 185-438 141-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.5E-51 5E-56 448.4 27.2 253 183-438 173-426 (437)
5 4b4t_H 26S protease regulatory 100.0 4.4E-51 1.5E-55 448.5 26.5 256 184-442 201-457 (467)
6 2di4_A Zinc protease, cell div 100.0 2.8E-52 9.6E-57 422.5 14.3 201 436-637 1-208 (238)
7 4b4t_M 26S protease regulatory 100.0 2.4E-50 8.2E-55 443.5 25.3 251 184-437 173-424 (434)
8 4b4t_L 26S protease subunit RP 100.0 5.8E-50 2E-54 440.9 27.8 251 185-438 174-425 (437)
9 4b4t_K 26S protease regulatory 100.0 2.6E-49 8.8E-54 435.0 27.9 250 184-436 164-415 (428)
10 3cf2_A TER ATPase, transitiona 100.0 2.2E-43 7.6E-48 413.0 21.4 287 185-481 197-510 (806)
11 3cf2_A TER ATPase, transitiona 100.0 2.9E-44 9.9E-49 420.5 9.9 231 185-418 470-701 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 4.6E-38 1.6E-42 323.6 28.2 251 186-439 6-256 (257)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 9.6E-39 3.3E-43 327.9 19.8 260 188-447 2-261 (262)
14 2x8a_A Nuclear valosin-contain 100.0 3.2E-38 1.1E-42 329.4 19.5 246 186-437 4-266 (274)
15 3cf0_A Transitional endoplasmi 100.0 2.5E-37 8.5E-42 326.5 25.0 247 186-435 9-281 (301)
16 3h4m_A Proteasome-activating n 100.0 3E-36 1E-40 313.9 26.6 250 185-437 10-260 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.5E-35 5.2E-40 316.1 25.1 225 186-418 6-233 (322)
18 1ixz_A ATP-dependent metallopr 100.0 3.7E-35 1.3E-39 301.4 26.9 245 185-432 9-253 (254)
19 1iy2_A ATP-dependent metallopr 100.0 8.9E-35 3.1E-39 303.0 27.5 260 168-432 18-277 (278)
20 3eie_A Vacuolar protein sortin 100.0 2.7E-35 9.1E-40 313.8 20.3 226 185-418 11-238 (322)
21 2r62_A Cell division protease 100.0 6.5E-37 2.2E-41 316.4 6.4 251 186-438 5-256 (268)
22 2qp9_X Vacuolar protein sortin 100.0 2.4E-34 8.2E-39 310.8 23.6 225 186-418 45-271 (355)
23 3hu3_A Transitional endoplasmi 100.0 2.8E-34 9.5E-39 322.2 24.8 245 187-437 199-461 (489)
24 2zan_A Vacuolar protein sortin 100.0 4E-33 1.4E-37 310.0 21.3 226 185-418 127-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 2.4E-31 8.3E-36 287.4 24.1 243 187-437 79-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 8.3E-32 2.9E-36 282.3 19.6 242 186-435 15-272 (297)
27 1ypw_A Transitional endoplasmi 100.0 5.7E-34 2E-38 337.7 -1.7 232 185-419 470-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 1.5E-30 5.2E-35 284.1 22.1 242 187-436 110-366 (389)
29 1ypw_A Transitional endoplasmi 100.0 1.6E-28 5.5E-33 291.1 26.2 244 186-435 198-459 (806)
30 3t15_A Ribulose bisphosphate c 100.0 1.2E-30 4E-35 274.6 6.9 229 220-466 31-281 (293)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.2E-26 4E-31 258.7 -1.9 206 186-410 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 7.5E-23 2.6E-27 215.0 15.3 226 190-429 28-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 3.1E-22 1E-26 215.5 18.0 254 187-470 39-363 (368)
34 3pfi_A Holliday junction ATP-d 99.9 2.3E-20 8E-25 198.8 21.6 213 189-435 26-254 (338)
35 1ofh_A ATP-dependent HSL prote 99.8 7.9E-20 2.7E-24 191.2 15.6 237 192-434 15-298 (310)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 1.4E-19 4.9E-24 191.0 17.3 218 188-435 8-238 (324)
37 3m6a_A ATP-dependent protease 99.8 1.5E-20 5.3E-25 213.7 9.7 225 188-434 77-340 (543)
38 1g41_A Heat shock protein HSLU 99.8 1.1E-20 3.7E-25 208.3 6.3 169 192-373 15-189 (444)
39 1d2n_A N-ethylmaleimide-sensit 99.8 5.5E-19 1.9E-23 182.8 18.0 222 191-434 32-263 (272)
40 2v1u_A Cell division control p 99.8 3.7E-18 1.3E-22 183.4 20.9 225 189-435 16-276 (387)
41 2z4s_A Chromosomal replication 99.8 1.8E-18 6E-23 191.9 18.5 221 187-436 100-333 (440)
42 3hws_A ATP-dependent CLP prote 99.8 1.3E-18 4.6E-23 187.7 14.5 223 193-418 16-325 (363)
43 2chg_A Replication factor C sm 99.8 3.1E-17 1.1E-21 161.4 21.4 201 188-433 13-224 (226)
44 1l8q_A Chromosomal replication 99.8 1E-17 3.4E-22 177.7 17.7 217 187-433 6-238 (324)
45 3u61_B DNA polymerase accessor 99.8 5.6E-18 1.9E-22 179.4 15.2 202 188-433 22-235 (324)
46 3pvs_A Replication-associated 99.7 4.3E-18 1.5E-22 189.0 12.8 205 188-435 22-244 (447)
47 2qby_B CDC6 homolog 3, cell di 99.7 5.5E-17 1.9E-21 174.9 20.7 216 189-436 17-271 (384)
48 1g8p_A Magnesium-chelatase 38 99.7 6E-17 2.1E-21 172.5 20.7 223 186-437 18-324 (350)
49 2r44_A Uncharacterized protein 99.7 1.4E-17 4.9E-22 176.9 15.4 215 190-438 25-300 (331)
50 3bos_A Putative DNA replicatio 99.7 3E-17 1E-21 164.5 15.8 207 187-433 23-241 (242)
51 1sxj_A Activator 1 95 kDa subu 99.7 2.3E-17 7.8E-22 186.5 16.5 222 188-434 35-273 (516)
52 1njg_A DNA polymerase III subu 99.7 1.1E-16 3.7E-21 159.2 19.0 203 187-432 18-248 (250)
53 1in4_A RUVB, holliday junction 99.7 2.8E-16 9.5E-21 167.9 22.3 216 189-435 22-250 (334)
54 2qby_A CDC6 homolog 1, cell di 99.7 2.9E-16 9.9E-21 168.4 20.1 225 189-436 17-273 (386)
55 1r6b_X CLPA protein; AAA+, N-t 99.7 7.5E-17 2.6E-21 190.3 16.2 222 189-436 183-434 (758)
56 1um8_A ATP-dependent CLP prote 99.7 1.2E-16 4E-21 173.2 15.9 237 192-432 21-362 (376)
57 1jbk_A CLPB protein; beta barr 99.7 2.2E-17 7.5E-22 158.7 8.8 158 189-372 19-194 (195)
58 1sxj_D Activator 1 41 kDa subu 99.7 4E-16 1.4E-20 166.1 18.9 207 187-433 32-261 (353)
59 4fcw_A Chaperone protein CLPB; 99.7 2.3E-16 7.9E-21 165.4 15.1 204 191-415 16-278 (311)
60 3pxg_A Negative regulator of g 99.7 2.1E-16 7E-21 176.6 15.6 206 188-435 176-406 (468)
61 3te6_A Regulatory protein SIR3 99.7 2.1E-16 7.3E-21 167.4 12.3 160 194-379 22-214 (318)
62 1fnn_A CDC6P, cell division co 99.7 2.3E-15 8E-20 162.0 20.6 222 189-436 14-275 (389)
63 2chq_A Replication factor C sm 99.7 5.9E-16 2E-20 162.2 15.2 201 187-432 12-223 (319)
64 1jr3_A DNA polymerase III subu 99.7 3.1E-15 1.1E-19 160.5 20.6 202 188-432 12-241 (373)
65 1sxj_B Activator 1 37 kDa subu 99.6 4.7E-15 1.6E-19 155.6 20.1 201 188-433 17-229 (323)
66 1qvr_A CLPB protein; coiled co 99.6 8.7E-16 3E-20 183.5 15.9 205 188-418 166-395 (854)
67 3pxi_A Negative regulator of g 99.6 1.1E-15 3.9E-20 180.3 16.5 197 191-412 490-721 (758)
68 3pxi_A Negative regulator of g 99.6 2.4E-15 8.3E-20 177.5 18.1 189 189-418 177-388 (758)
69 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.9E-16 1.3E-20 175.2 8.9 211 192-435 22-285 (500)
70 1iqp_A RFCS; clamp loader, ext 99.6 1.2E-14 4.1E-19 152.7 19.0 201 187-432 20-231 (327)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 1.8E-15 6.3E-20 178.4 14.1 197 192-413 458-713 (758)
72 2bjv_A PSP operon transcriptio 99.6 5.1E-15 1.7E-19 152.3 15.7 209 189-428 3-250 (265)
73 2p65_A Hypothetical protein PF 99.6 8.8E-16 3E-20 147.3 8.5 151 189-364 19-187 (187)
74 1ojl_A Transcriptional regulat 99.6 7.2E-15 2.5E-19 155.1 11.4 204 192-429 2-246 (304)
75 1sxj_C Activator 1 40 kDa subu 99.5 6.7E-14 2.3E-18 149.4 17.3 205 188-432 21-236 (340)
76 1sxj_E Activator 1 40 kDa subu 99.5 9E-14 3.1E-18 148.4 17.8 188 188-413 10-242 (354)
77 3f9v_A Minichromosome maintena 99.5 1.6E-15 5.5E-20 174.0 3.2 221 192-436 295-588 (595)
78 1qvr_A CLPB protein; coiled co 99.5 5.5E-14 1.9E-18 168.0 14.9 202 191-415 557-819 (854)
79 1w5s_A Origin recognition comp 99.5 7.7E-13 2.6E-17 143.6 17.5 228 190-435 20-293 (412)
80 3n70_A Transport activator; si 99.5 1.3E-13 4.5E-18 129.2 9.5 113 192-341 1-116 (145)
81 3co5_A Putative two-component 99.5 4.3E-14 1.5E-18 132.3 5.9 112 193-341 5-116 (143)
82 3k1j_A LON protease, ATP-depen 99.4 1.7E-12 5.8E-17 149.4 16.2 221 186-434 35-374 (604)
83 3cmw_A Protein RECA, recombina 99.4 2.6E-13 9E-18 169.0 9.5 155 186-341 1014-1218(1706)
84 1a5t_A Delta prime, HOLB; zinc 99.4 7.6E-12 2.6E-16 133.5 17.3 160 222-411 21-208 (334)
85 2lna_A AFG3-like protein 2; st 99.3 7.9E-12 2.7E-16 109.6 9.6 84 24-128 15-98 (99)
86 3kw6_A 26S protease regulatory 99.3 1E-11 3.5E-16 104.3 9.7 75 361-437 1-75 (78)
87 2krk_A 26S protease regulatory 99.3 1.2E-11 4.1E-16 106.0 9.6 78 359-438 7-84 (86)
88 3vlf_B 26S protease regulatory 99.2 1.7E-11 5.8E-16 105.5 8.5 79 364-444 2-80 (88)
89 2gno_A DNA polymerase III, gam 99.2 5.1E-11 1.7E-15 125.7 13.7 142 196-376 1-152 (305)
90 4akg_A Glutathione S-transfera 99.2 1.3E-10 4.4E-15 150.8 17.5 139 225-379 1267-1434(2695)
91 1ny5_A Transcriptional regulat 99.2 1.7E-10 5.8E-15 125.6 14.2 211 191-432 136-384 (387)
92 3ec2_A DNA replication protein 99.1 9.6E-11 3.3E-15 113.1 8.8 130 188-342 6-144 (180)
93 3aji_B S6C, proteasome (prosom 99.0 5.2E-10 1.8E-14 94.9 7.8 74 364-439 2-75 (83)
94 2dzn_B 26S protease regulatory 99.0 3.6E-10 1.2E-14 95.8 4.2 72 366-439 1-72 (82)
95 2w58_A DNAI, primosome compone 98.9 1.3E-09 4.5E-14 106.8 7.7 102 188-296 21-127 (202)
96 3f8t_A Predicted ATPase involv 98.9 5.6E-09 1.9E-13 114.9 11.3 190 226-437 240-485 (506)
97 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.8E-09 6.1E-14 113.9 4.9 117 226-348 124-242 (331)
98 2fna_A Conserved hypothetical 98.8 9.2E-08 3.1E-12 100.8 18.0 189 188-410 9-252 (357)
99 2kjq_A DNAA-related protein; s 98.8 8.4E-09 2.9E-13 97.2 8.7 103 225-360 36-145 (149)
100 3dzd_A Transcriptional regulat 98.8 1.6E-08 5.4E-13 109.3 11.4 194 192-414 129-360 (368)
101 2qen_A Walker-type ATPase; unk 98.8 3.3E-07 1.1E-11 96.3 20.8 190 189-409 9-247 (350)
102 4akg_A Glutathione S-transfera 98.7 1.5E-07 5E-12 122.7 16.7 127 225-373 645-790 (2695)
103 2qgz_A Helicase loader, putati 98.7 1.5E-08 5.3E-13 106.8 6.0 100 189-296 121-226 (308)
104 1svm_A Large T antigen; AAA+ f 98.6 5.3E-08 1.8E-12 105.4 8.0 120 220-362 164-284 (377)
105 2r2a_A Uncharacterized protein 98.6 2.5E-08 8.6E-13 98.6 4.3 130 224-367 4-157 (199)
106 3cmu_A Protein RECA, recombina 98.5 1.9E-07 6.6E-12 118.1 8.6 116 221-337 1423-1560(2050)
107 3vkg_A Dynein heavy chain, cyt 98.3 4.4E-06 1.5E-10 109.7 16.8 139 225-378 1304-1471(3245)
108 2c9o_A RUVB-like 1; hexameric 98.3 1.6E-06 5.5E-11 96.2 10.7 130 285-436 296-438 (456)
109 1jr3_D DNA polymerase III, del 98.2 9E-06 3.1E-10 86.3 13.4 178 223-434 16-208 (343)
110 1tue_A Replication protein E1; 98.1 2.5E-06 8.7E-11 84.3 6.9 29 226-254 59-87 (212)
111 1ye8_A Protein THEP1, hypothet 98.1 7.7E-06 2.6E-10 79.1 9.6 28 227-254 2-29 (178)
112 3vkg_A Dynein heavy chain, cyt 98.0 1.7E-05 5.9E-10 104.2 13.7 125 226-372 605-749 (3245)
113 1u0j_A DNA replication protein 97.9 2.4E-05 8.2E-10 80.4 8.2 26 226-251 105-130 (267)
114 2w0m_A SSO2452; RECA, SSPF, un 97.9 6E-05 2.1E-09 74.2 10.7 36 223-258 21-59 (235)
115 2cvh_A DNA repair and recombin 97.9 2E-05 7E-10 77.3 7.2 39 222-260 17-55 (220)
116 2ehv_A Hypothetical protein PH 97.8 7.7E-05 2.6E-09 74.5 10.5 111 224-344 29-185 (251)
117 3hr8_A Protein RECA; alpha and 97.7 4.8E-05 1.6E-09 81.6 8.3 113 225-337 61-194 (356)
118 1xp8_A RECA protein, recombina 97.7 5.2E-05 1.8E-09 81.7 8.4 118 221-338 70-208 (366)
119 1n0w_A DNA repair protein RAD5 97.7 4.7E-05 1.6E-09 75.8 7.6 77 222-298 21-133 (243)
120 2z43_A DNA repair and recombin 97.7 7E-05 2.4E-09 79.1 8.8 116 221-338 103-255 (324)
121 2zr9_A Protein RECA, recombina 97.7 3.2E-05 1.1E-09 82.8 6.0 77 222-298 58-153 (349)
122 3cmu_A Protein RECA, recombina 97.6 5.9E-05 2E-09 95.8 7.9 119 221-339 728-867 (2050)
123 4a74_A DNA repair and recombin 97.6 0.00011 3.9E-09 72.3 8.3 24 226-249 26-49 (231)
124 1qhx_A CPT, protein (chloramph 97.6 6E-05 2.1E-09 71.6 5.4 39 225-263 3-41 (178)
125 1u94_A RECA protein, recombina 97.5 0.00012 4.2E-09 78.5 8.0 78 221-298 59-155 (356)
126 1v5w_A DMC1, meiotic recombina 97.5 0.00016 5.4E-09 77.1 8.1 112 226-339 123-272 (343)
127 1pzn_A RAD51, DNA repair and r 97.5 0.00016 5.5E-09 77.3 7.9 115 225-341 131-286 (349)
128 1z6t_A APAF-1, apoptotic prote 97.5 0.001 3.5E-08 75.4 14.5 170 190-401 122-322 (591)
129 2dr3_A UPF0273 protein PH0284; 97.4 0.00049 1.7E-08 68.4 10.5 37 222-258 20-59 (247)
130 2eyu_A Twitching motility prot 97.4 0.00021 7.2E-09 73.3 7.0 67 226-293 26-107 (261)
131 3lda_A DNA repair protein RAD5 97.4 0.00027 9.3E-09 76.9 8.1 117 222-340 175-327 (400)
132 1g41_A Heat shock protein HSLU 97.4 0.00096 3.3E-08 73.4 12.5 95 272-373 240-346 (444)
133 3cmw_A Protein RECA, recombina 97.4 0.00013 4.3E-09 91.8 6.0 78 221-298 728-824 (1706)
134 2i1q_A DNA repair and recombin 97.4 0.00028 9.4E-09 74.2 7.7 115 222-338 95-256 (322)
135 3jvv_A Twitching mobility prot 97.4 0.00034 1.2E-08 75.0 8.5 96 227-344 125-234 (356)
136 3io5_A Recombination and repai 97.3 0.00026 8.9E-09 74.4 7.3 114 224-337 26-168 (333)
137 3sfz_A APAF-1, apoptotic pepti 97.3 0.0019 6.6E-08 79.0 15.7 170 190-401 122-322 (1249)
138 2a5y_B CED-4; apoptosis; HET: 97.3 0.0018 6E-08 73.3 14.2 168 195-400 131-330 (549)
139 3trf_A Shikimate kinase, SK; a 97.3 0.00014 4.8E-09 69.5 4.1 32 225-256 5-36 (185)
140 2p5t_B PEZT; postsegregational 97.3 0.00066 2.3E-08 68.8 9.0 40 222-261 29-68 (253)
141 4g1u_C Hemin import ATP-bindin 97.2 0.00053 1.8E-08 70.4 8.2 56 273-342 148-209 (266)
142 3gfo_A Cobalt import ATP-bindi 97.2 0.00045 1.6E-08 71.4 7.7 57 274-344 151-207 (275)
143 3vaa_A Shikimate kinase, SK; s 97.2 0.00019 6.5E-09 69.9 4.1 32 225-256 25-56 (199)
144 2rhm_A Putative kinase; P-loop 97.2 0.0002 6.8E-09 68.7 4.0 35 222-256 2-36 (193)
145 3dm5_A SRP54, signal recogniti 97.2 0.0038 1.3E-07 68.6 14.5 70 224-293 99-191 (443)
146 3upu_A ATP-dependent DNA helic 97.2 0.00088 3E-08 74.1 9.3 51 187-249 19-69 (459)
147 2orw_A Thymidine kinase; TMTK, 97.2 0.00015 5.1E-09 70.3 2.7 30 227-256 5-37 (184)
148 3rlf_A Maltose/maltodextrin im 97.1 0.00064 2.2E-08 73.4 7.7 57 272-342 139-195 (381)
149 1nlf_A Regulatory protein REPA 97.1 0.00049 1.7E-08 70.7 6.3 25 225-249 30-54 (279)
150 2r8r_A Sensor protein; KDPD, P 97.1 0.0028 9.6E-08 63.4 11.5 33 226-258 7-42 (228)
151 3tif_A Uncharacterized ABC tra 97.1 0.00054 1.9E-08 69.0 6.4 55 274-342 153-207 (235)
152 2ixe_A Antigen peptide transpo 97.1 0.0017 5.9E-08 66.8 10.3 55 274-342 164-218 (271)
153 1gvn_B Zeta; postsegregational 97.1 0.00038 1.3E-08 72.3 5.3 61 198-262 10-70 (287)
154 2cbz_A Multidrug resistance-as 97.1 0.0015 5E-08 65.9 9.5 58 273-343 134-191 (237)
155 4gp7_A Metallophosphoesterase; 97.1 0.0003 1E-08 67.0 4.1 19 226-244 10-28 (171)
156 2zts_A Putative uncharacterize 97.1 0.0016 5.4E-08 64.7 9.6 38 221-258 26-67 (251)
157 1cr0_A DNA primase/helicase; R 97.1 0.0007 2.4E-08 70.0 7.2 37 221-257 31-71 (296)
158 2b8t_A Thymidine kinase; deoxy 97.1 0.001 3.6E-08 66.5 8.1 68 228-296 15-101 (223)
159 1v43_A Sugar-binding transport 97.1 0.0014 4.6E-08 70.7 9.4 55 274-342 149-203 (372)
160 3fvq_A Fe(3+) IONS import ATP- 97.1 0.001 3.6E-08 71.2 8.4 56 273-342 145-200 (359)
161 1vpl_A ABC transporter, ATP-bi 97.1 0.00067 2.3E-08 69.3 6.6 54 274-342 154-207 (256)
162 2iyv_A Shikimate kinase, SK; t 97.1 0.00031 1.1E-08 67.1 3.9 31 226-256 3-33 (184)
163 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00043 1.5E-08 73.4 5.4 68 226-293 172-249 (330)
164 3kb2_A SPBC2 prophage-derived 97.0 0.00036 1.2E-08 65.4 4.2 31 227-257 3-33 (173)
165 1zp6_A Hypothetical protein AT 97.0 0.00042 1.4E-08 66.5 4.7 39 224-262 8-46 (191)
166 2ewv_A Twitching motility prot 97.0 0.0015 5.3E-08 70.3 9.6 71 223-293 134-218 (372)
167 3tui_C Methionine import ATP-b 97.0 0.001 3.6E-08 71.3 8.0 56 273-342 170-225 (366)
168 1z47_A CYSA, putative ABC-tran 97.0 0.0011 3.8E-08 70.9 8.1 55 274-342 153-207 (355)
169 3iij_A Coilin-interacting nucl 97.0 0.00039 1.3E-08 66.2 4.0 33 224-256 10-42 (180)
170 1via_A Shikimate kinase; struc 97.0 0.00033 1.1E-08 66.5 3.4 29 227-255 6-34 (175)
171 2iut_A DNA translocase FTSK; n 97.0 0.0054 1.9E-07 69.3 13.7 74 286-373 345-420 (574)
172 2ff7_A Alpha-hemolysin translo 97.0 0.0021 7.1E-08 65.2 9.5 54 274-343 153-206 (247)
173 2pcj_A ABC transporter, lipopr 97.0 0.0012 4.1E-08 65.9 7.4 54 274-342 148-201 (224)
174 2r6a_A DNAB helicase, replicat 97.0 0.0012 4.1E-08 72.9 8.1 38 221-258 199-240 (454)
175 2yyz_A Sugar ABC transporter, 97.0 0.0012 4.2E-08 70.7 7.8 55 274-342 141-195 (359)
176 1y63_A LMAJ004144AAA protein; 97.0 0.00041 1.4E-08 66.7 3.7 32 225-256 10-42 (184)
177 1kag_A SKI, shikimate kinase I 97.0 0.00052 1.8E-08 64.6 4.4 30 225-254 4-33 (173)
178 1zuh_A Shikimate kinase; alpha 96.9 0.00046 1.6E-08 64.9 3.9 31 226-256 8-38 (168)
179 2cdn_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 66.4 4.5 34 223-256 18-51 (201)
180 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0012 4.3E-08 67.1 7.2 40 225-264 4-46 (260)
181 1sgw_A Putative ABC transporte 96.9 0.00097 3.3E-08 66.3 5.9 23 227-249 37-59 (214)
182 2onk_A Molybdate/tungstate ABC 96.9 0.00091 3.1E-08 67.6 5.7 55 274-342 134-188 (240)
183 1g6h_A High-affinity branched- 96.9 0.003 1E-07 64.4 9.6 54 276-344 163-216 (257)
184 1qf9_A UMP/CMP kinase, protein 96.9 0.00051 1.7E-08 65.5 3.6 33 224-256 5-37 (194)
185 3crm_A TRNA delta(2)-isopenten 96.9 0.0011 3.7E-08 70.1 6.3 36 225-260 5-40 (323)
186 1tev_A UMP-CMP kinase; ploop, 96.9 0.00049 1.7E-08 65.8 3.4 31 225-255 3-33 (196)
187 3t61_A Gluconokinase; PSI-biol 96.8 0.00072 2.5E-08 65.7 4.5 32 225-256 18-49 (202)
188 2ze6_A Isopentenyl transferase 96.8 0.00066 2.2E-08 69.0 4.2 33 227-259 3-35 (253)
189 2i3b_A HCR-ntpase, human cance 96.8 0.0017 6E-08 63.1 7.1 23 227-249 3-25 (189)
190 2olj_A Amino acid ABC transpor 96.8 0.0015 5.1E-08 67.0 6.9 55 274-343 167-221 (263)
191 1ly1_A Polynucleotide kinase; 96.8 0.00055 1.9E-08 64.6 3.4 30 225-254 2-32 (181)
192 3lw7_A Adenylate kinase relate 96.8 0.00052 1.8E-08 64.0 3.2 29 227-256 3-31 (179)
193 2it1_A 362AA long hypothetical 96.8 0.0012 4.2E-08 70.8 6.4 55 274-342 141-195 (362)
194 2ius_A DNA translocase FTSK; n 96.8 0.0033 1.1E-07 70.4 9.9 75 285-373 297-374 (512)
195 3d31_A Sulfate/molybdate ABC t 96.8 0.0017 5.8E-08 69.3 7.3 55 274-342 135-189 (348)
196 1e6c_A Shikimate kinase; phosp 96.8 0.00071 2.4E-08 63.6 3.7 31 226-256 3-33 (173)
197 2c95_A Adenylate kinase 1; tra 96.8 0.00071 2.4E-08 64.9 3.6 32 225-256 9-40 (196)
198 3bh0_A DNAB-like replicative h 96.7 0.0026 8.9E-08 66.8 8.1 38 221-258 64-104 (315)
199 2d2e_A SUFC protein; ABC-ATPas 96.7 0.0061 2.1E-07 61.8 10.5 54 275-343 152-205 (250)
200 2vli_A Antibiotic resistance p 96.7 0.0007 2.4E-08 64.3 3.3 30 225-254 5-34 (183)
201 1aky_A Adenylate kinase; ATP:A 96.7 0.00079 2.7E-08 66.4 3.8 32 225-256 4-35 (220)
202 2q6t_A DNAB replication FORK h 96.7 0.0019 6.7E-08 71.0 7.3 38 221-258 196-237 (444)
203 2nq2_C Hypothetical ABC transp 96.7 0.0025 8.4E-08 64.9 7.5 55 274-342 136-190 (253)
204 2bwj_A Adenylate kinase 5; pho 96.7 0.00074 2.5E-08 64.9 3.4 32 225-256 12-43 (199)
205 3dl0_A Adenylate kinase; phosp 96.7 0.00082 2.8E-08 65.9 3.7 29 228-256 3-31 (216)
206 1zd8_A GTP:AMP phosphotransfer 96.7 0.00075 2.6E-08 67.0 3.4 33 224-256 6-38 (227)
207 1ji0_A ABC transporter; ATP bi 96.7 0.0028 9.7E-08 63.9 7.6 52 276-342 149-200 (240)
208 2pez_A Bifunctional 3'-phospho 96.7 0.0013 4.4E-08 62.6 4.8 37 225-261 5-44 (179)
209 1g29_1 MALK, maltose transport 96.7 0.0039 1.3E-07 67.1 9.1 55 274-342 147-201 (372)
210 3fb4_A Adenylate kinase; psych 96.7 0.00087 3E-08 65.7 3.7 29 228-256 3-31 (216)
211 3nh6_A ATP-binding cassette SU 96.7 0.0032 1.1E-07 66.0 8.2 56 272-343 196-251 (306)
212 1kht_A Adenylate kinase; phosp 96.7 0.00071 2.4E-08 64.5 2.9 25 226-250 4-28 (192)
213 2yz2_A Putative ABC transporte 96.7 0.0038 1.3E-07 64.0 8.5 56 274-344 146-201 (266)
214 2pt5_A Shikimate kinase, SK; a 96.7 0.00092 3.2E-08 62.6 3.6 30 227-256 2-31 (168)
215 2fz4_A DNA repair protein RAD2 96.7 0.0052 1.8E-07 61.6 9.3 33 227-259 110-142 (237)
216 2ghi_A Transport protein; mult 96.6 0.0044 1.5E-07 63.3 8.8 54 274-343 163-216 (260)
217 3cm0_A Adenylate kinase; ATP-b 96.6 0.001 3.4E-08 63.5 3.6 31 226-256 5-35 (186)
218 1vma_A Cell division protein F 96.6 0.005 1.7E-07 64.5 9.2 71 223-293 102-195 (306)
219 3umf_A Adenylate kinase; rossm 96.6 0.001 3.4E-08 66.4 3.7 38 223-262 27-64 (217)
220 1zak_A Adenylate kinase; ATP:A 96.6 0.00074 2.5E-08 66.7 2.7 32 224-255 4-35 (222)
221 3be4_A Adenylate kinase; malar 96.6 0.00089 3.1E-08 66.1 3.2 31 226-256 6-36 (217)
222 3tlx_A Adenylate kinase 2; str 96.6 0.001 3.4E-08 67.2 3.6 33 224-256 28-60 (243)
223 1ukz_A Uridylate kinase; trans 96.6 0.0011 3.6E-08 64.4 3.7 32 225-256 15-46 (203)
224 1ak2_A Adenylate kinase isoenz 96.6 0.0012 3.9E-08 66.0 3.9 32 225-256 16-47 (233)
225 3e1s_A Exodeoxyribonuclease V, 96.5 0.0019 6.4E-08 73.6 5.7 97 226-340 205-317 (574)
226 1oxx_K GLCV, glucose, ABC tran 96.5 0.0017 5.8E-08 69.4 5.1 55 274-342 148-202 (353)
227 1ex7_A Guanylate kinase; subst 96.5 0.0022 7.5E-08 62.4 5.4 24 226-249 2-25 (186)
228 2px0_A Flagellar biosynthesis 96.5 0.012 4.3E-07 61.1 11.5 67 224-292 104-190 (296)
229 4eun_A Thermoresistant glucoki 96.5 0.0016 5.5E-08 63.3 4.4 35 225-261 29-63 (200)
230 1knq_A Gluconate kinase; ALFA/ 96.5 0.0015 5E-08 61.8 3.9 30 226-255 9-38 (175)
231 1s96_A Guanylate kinase, GMP k 96.5 0.0047 1.6E-07 61.5 7.7 25 226-250 17-41 (219)
232 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00087 3E-08 71.6 2.3 54 195-256 2-55 (359)
233 1nks_A Adenylate kinase; therm 96.5 0.002 6.8E-08 61.3 4.5 35 227-261 3-40 (194)
234 1jjv_A Dephospho-COA kinase; P 96.4 0.0034 1.2E-07 61.0 6.1 29 226-255 3-31 (206)
235 3gd7_A Fusion complex of cysti 96.4 0.0014 4.9E-08 70.9 3.8 56 271-342 160-215 (390)
236 3thx_B DNA mismatch repair pro 96.4 0.0094 3.2E-07 71.2 11.0 106 226-345 674-800 (918)
237 1mv5_A LMRA, multidrug resista 96.4 0.0022 7.6E-08 64.7 4.8 27 222-248 23-51 (243)
238 1e4v_A Adenylate kinase; trans 96.4 0.0015 5.3E-08 64.1 3.4 30 227-256 2-31 (214)
239 2pbr_A DTMP kinase, thymidylat 96.4 0.0023 7.9E-08 61.0 4.6 30 228-257 3-35 (195)
240 3sr0_A Adenylate kinase; phosp 96.4 0.0017 5.7E-08 64.1 3.6 33 228-262 3-35 (206)
241 2pjz_A Hypothetical protein ST 96.4 0.018 6.1E-07 58.9 11.4 52 274-343 136-187 (263)
242 3kl4_A SRP54, signal recogniti 96.4 0.015 5.3E-07 63.7 11.5 71 224-294 96-189 (433)
243 1cke_A CK, MSSA, protein (cyti 96.4 0.0021 7.1E-08 63.3 4.2 30 226-255 6-35 (227)
244 1tf7_A KAIC; homohexamer, hexa 96.4 0.0077 2.6E-07 67.7 9.3 105 226-341 282-417 (525)
245 3uie_A Adenylyl-sulfate kinase 96.4 0.0028 9.6E-08 61.5 5.0 38 224-261 24-64 (200)
246 2qi9_C Vitamin B12 import ATP- 96.4 0.0058 2E-07 62.1 7.5 54 274-342 134-194 (249)
247 2if2_A Dephospho-COA kinase; a 96.3 0.0017 5.7E-08 63.0 3.1 29 227-256 3-31 (204)
248 1g5t_A COB(I)alamin adenosyltr 96.3 0.011 3.9E-07 57.7 8.8 70 227-296 30-132 (196)
249 2pze_A Cystic fibrosis transme 96.3 0.0059 2E-07 61.0 7.0 24 226-249 35-58 (229)
250 3qf4_B Uncharacterized ABC tra 96.3 0.004 1.4E-07 71.2 6.4 57 272-344 497-553 (598)
251 3ozx_A RNAse L inhibitor; ATP 96.3 0.0063 2.1E-07 68.7 7.9 58 271-342 390-447 (538)
252 2v54_A DTMP kinase, thymidylat 96.3 0.003 1E-07 61.0 4.6 33 225-257 4-37 (204)
253 3b5x_A Lipid A export ATP-bind 96.3 0.0036 1.2E-07 71.3 5.9 53 274-342 488-540 (582)
254 3j16_B RLI1P; ribosome recycli 96.2 0.0048 1.6E-07 70.7 6.7 57 272-342 473-529 (608)
255 2jaq_A Deoxyguanosine kinase; 96.2 0.0024 8.2E-08 61.4 3.6 29 227-255 2-30 (205)
256 3ake_A Cytidylate kinase; CMP 96.2 0.0035 1.2E-07 60.5 4.8 31 227-257 4-34 (208)
257 2z0h_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 60.1 4.5 30 228-257 3-35 (197)
258 4f4c_A Multidrug resistance pr 96.2 0.0083 2.8E-07 74.8 9.1 59 271-345 559-617 (1321)
259 2xb4_A Adenylate kinase; ATP-b 96.2 0.0025 8.5E-08 63.2 3.6 30 227-256 2-31 (223)
260 4a82_A Cystic fibrosis transme 96.2 0.0061 2.1E-07 69.4 7.1 56 272-343 483-538 (578)
261 3ney_A 55 kDa erythrocyte memb 96.2 0.0048 1.6E-07 60.5 5.4 26 224-249 18-43 (197)
262 1uf9_A TT1252 protein; P-loop, 96.1 0.0032 1.1E-07 60.6 3.8 31 225-256 8-38 (203)
263 2bbw_A Adenylate kinase 4, AK4 96.1 0.0037 1.3E-07 62.8 4.4 31 225-255 27-57 (246)
264 3r20_A Cytidylate kinase; stru 96.1 0.0036 1.2E-07 63.0 4.3 31 225-255 9-39 (233)
265 1uj2_A Uridine-cytidine kinase 96.0 0.005 1.7E-07 62.1 4.9 39 224-262 21-67 (252)
266 3thx_A DNA mismatch repair pro 96.0 0.016 5.3E-07 69.5 9.8 22 226-247 663-684 (934)
267 3b60_A Lipid A export ATP-bind 96.0 0.013 4.6E-07 66.6 8.9 55 273-343 487-541 (582)
268 3j16_B RLI1P; ribosome recycli 96.0 0.011 3.8E-07 67.6 8.2 56 274-344 229-284 (608)
269 3bgw_A DNAB-like replicative h 96.0 0.012 4.2E-07 64.7 8.2 38 221-258 193-233 (444)
270 2wwf_A Thymidilate kinase, put 96.0 0.0023 8E-08 62.1 2.1 29 225-253 10-38 (212)
271 2grj_A Dephospho-COA kinase; T 96.0 0.0034 1.2E-07 61.2 3.3 30 227-256 14-43 (192)
272 1q57_A DNA primase/helicase; d 96.0 0.011 3.8E-07 65.9 7.8 38 221-258 238-279 (503)
273 3ozx_A RNAse L inhibitor; ATP 95.9 0.0092 3.2E-07 67.3 7.1 57 272-344 144-200 (538)
274 3nwj_A ATSK2; P loop, shikimat 95.9 0.0036 1.2E-07 63.6 3.3 31 226-256 49-79 (250)
275 1tf7_A KAIC; homohexamer, hexa 95.9 0.015 5.2E-07 65.2 8.7 110 225-344 39-188 (525)
276 2qor_A Guanylate kinase; phosp 95.9 0.0074 2.5E-07 58.7 5.2 28 223-250 10-37 (204)
277 1vt4_I APAF-1 related killer D 95.8 0.023 7.9E-07 68.4 10.2 43 195-248 131-173 (1221)
278 2plr_A DTMP kinase, probable t 95.8 0.0046 1.6E-07 59.8 3.6 28 225-252 4-31 (213)
279 1nn5_A Similar to deoxythymidy 95.8 0.0029 1E-07 61.5 2.2 26 225-250 9-34 (215)
280 3c8u_A Fructokinase; YP_612366 95.8 0.0062 2.1E-07 59.5 4.5 26 225-250 22-47 (208)
281 1yqt_A RNAse L inhibitor; ATP- 95.8 0.021 7.3E-07 64.3 9.5 57 272-343 164-220 (538)
282 3a8t_A Adenylate isopentenyltr 95.8 0.0044 1.5E-07 65.7 3.6 36 225-260 40-75 (339)
283 2yvu_A Probable adenylyl-sulfa 95.8 0.0093 3.2E-07 56.9 5.6 37 225-261 13-52 (186)
284 3zvl_A Bifunctional polynucleo 95.8 0.0098 3.3E-07 64.9 6.4 32 224-255 257-288 (416)
285 2oap_1 GSPE-2, type II secreti 95.8 0.0071 2.4E-07 67.8 5.3 69 225-293 260-342 (511)
286 3qf4_A ABC transporter, ATP-bi 95.8 0.0093 3.2E-07 68.0 6.3 55 272-342 485-539 (587)
287 3foz_A TRNA delta(2)-isopenten 95.8 0.0053 1.8E-07 64.3 3.9 38 224-261 9-46 (316)
288 3bk7_A ABC transporter ATP-bin 95.7 0.018 6.1E-07 65.9 8.5 56 273-342 478-533 (607)
289 3tau_A Guanylate kinase, GMP k 95.7 0.008 2.7E-07 58.8 4.9 26 225-250 8-33 (208)
290 2qt1_A Nicotinamide riboside k 95.7 0.0047 1.6E-07 60.1 3.2 31 226-256 22-53 (207)
291 2h92_A Cytidylate kinase; ross 95.7 0.0055 1.9E-07 60.0 3.7 32 225-256 3-34 (219)
292 1ltq_A Polynucleotide kinase; 95.7 0.0038 1.3E-07 64.4 2.6 30 225-254 2-32 (301)
293 1m7g_A Adenylylsulfate kinase; 95.7 0.0069 2.3E-07 59.3 4.2 39 224-262 24-66 (211)
294 3b6e_A Interferon-induced heli 95.7 0.021 7.3E-07 55.0 7.7 23 226-248 49-71 (216)
295 1vht_A Dephospho-COA kinase; s 95.7 0.0067 2.3E-07 59.5 4.0 31 225-256 4-34 (218)
296 1yqt_A RNAse L inhibitor; ATP- 95.6 0.019 6.5E-07 64.8 8.0 57 272-342 407-463 (538)
297 4e22_A Cytidylate kinase; P-lo 95.6 0.0069 2.4E-07 61.3 4.0 29 226-254 28-56 (252)
298 2j41_A Guanylate kinase; GMP, 95.6 0.007 2.4E-07 58.4 3.8 25 225-249 6-30 (207)
299 4a1f_A DNAB helicase, replicat 95.6 0.031 1.1E-06 59.3 9.0 38 221-258 42-82 (338)
300 1kgd_A CASK, peripheral plasma 95.5 0.0078 2.7E-07 57.4 3.9 24 226-249 6-29 (180)
301 4f4c_A Multidrug resistance pr 95.5 0.01 3.5E-07 73.9 6.0 58 271-344 1222-1279(1321)
302 1q3t_A Cytidylate kinase; nucl 95.5 0.0091 3.1E-07 59.5 4.5 32 224-255 15-46 (236)
303 2axn_A 6-phosphofructo-2-kinas 95.4 0.03 1E-06 62.8 8.7 40 225-264 35-77 (520)
304 2f6r_A COA synthase, bifunctio 95.4 0.007 2.4E-07 62.4 3.2 34 225-261 75-108 (281)
305 2yl4_A ATP-binding cassette SU 95.4 0.017 5.7E-07 66.0 6.7 55 273-343 490-544 (595)
306 1wb9_A DNA mismatch repair pro 95.4 0.061 2.1E-06 63.5 11.5 23 226-248 608-630 (800)
307 3ux8_A Excinuclease ABC, A sub 95.4 0.02 6.9E-07 66.2 7.2 56 272-342 549-607 (670)
308 2yhs_A FTSY, cell division pro 95.3 0.13 4.5E-06 57.2 13.3 25 225-249 293-317 (503)
309 3d3q_A TRNA delta(2)-isopenten 95.3 0.0085 2.9E-07 63.6 3.7 33 226-258 8-40 (340)
310 3exa_A TRNA delta(2)-isopenten 95.3 0.0097 3.3E-07 62.4 4.0 35 226-260 4-38 (322)
311 4aby_A DNA repair protein RECN 95.3 0.04 1.4E-06 59.4 9.0 53 274-342 303-357 (415)
312 1rz3_A Hypothetical protein rb 95.3 0.027 9.3E-07 54.6 6.9 35 225-259 22-59 (201)
313 3bk7_A ABC transporter ATP-bin 95.3 0.038 1.3E-06 63.2 9.0 56 273-343 235-290 (607)
314 1w36_D RECD, exodeoxyribonucle 95.2 0.02 6.7E-07 65.6 6.6 23 226-248 165-187 (608)
315 2bdt_A BH3686; alpha-beta prot 95.2 0.0091 3.1E-07 57.0 3.2 35 227-262 4-38 (189)
316 2iw3_A Elongation factor 3A; a 95.2 0.025 8.5E-07 67.9 7.6 54 273-344 555-608 (986)
317 2qmh_A HPR kinase/phosphorylas 95.2 0.0094 3.2E-07 58.5 3.1 33 225-258 34-66 (205)
318 1z6g_A Guanylate kinase; struc 95.2 0.0099 3.4E-07 58.7 3.4 32 218-249 14-47 (218)
319 3asz_A Uridine kinase; cytidin 95.1 0.0089 3E-07 58.1 2.9 26 225-250 6-31 (211)
320 3fdi_A Uncharacterized protein 95.1 0.012 4.2E-07 57.5 3.9 30 226-255 7-36 (201)
321 3a00_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 56.5 3.5 24 226-249 2-25 (186)
322 3llm_A ATP-dependent RNA helic 95.1 0.086 2.9E-06 52.3 10.1 21 226-246 77-97 (235)
323 3tr0_A Guanylate kinase, GMP k 95.0 0.013 4.6E-07 56.3 3.8 24 226-249 8-31 (205)
324 3g5u_A MCG1178, multidrug resi 95.0 0.027 9.2E-07 70.0 7.3 58 271-344 531-588 (1284)
325 2v3c_C SRP54, signal recogniti 94.9 0.041 1.4E-06 60.3 7.5 35 224-258 98-135 (432)
326 1w4r_A Thymidine kinase; type 94.8 0.02 6.8E-07 55.9 4.3 69 226-296 21-103 (195)
327 2gza_A Type IV secretion syste 94.8 0.025 8.5E-07 60.5 5.4 69 225-293 175-261 (361)
328 1ewq_A DNA mismatch repair pro 94.8 0.078 2.7E-06 62.2 10.0 24 225-248 576-599 (765)
329 2gxq_A Heat resistant RNA depe 94.8 0.12 4.1E-06 49.5 9.8 18 226-243 39-56 (207)
330 2jeo_A Uridine-cytidine kinase 94.8 0.015 5.3E-07 58.2 3.6 32 221-252 19-52 (245)
331 3e70_C DPA, signal recognition 94.8 0.066 2.3E-06 56.5 8.6 27 223-249 127-153 (328)
332 1xx6_A Thymidine kinase; NESG, 94.7 0.047 1.6E-06 53.1 6.7 69 227-296 10-93 (191)
333 1lvg_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 56.3 3.3 25 225-249 4-28 (198)
334 1zu4_A FTSY; GTPase, signal re 94.7 0.062 2.1E-06 56.5 8.1 36 223-258 103-141 (320)
335 3g5u_A MCG1178, multidrug resi 94.6 0.031 1.1E-06 69.4 6.5 58 271-344 1176-1233(1284)
336 2j37_W Signal recognition part 94.6 0.066 2.3E-06 59.8 8.5 35 224-258 100-137 (504)
337 1hv8_A Putative ATP-dependent 94.6 0.21 7.2E-06 51.8 12.1 58 189-248 6-67 (367)
338 1x6v_B Bifunctional 3'-phospho 94.6 0.024 8.2E-07 64.9 4.9 37 225-261 52-91 (630)
339 1htw_A HI0065; nucleotide-bind 94.6 0.024 8.3E-07 53.3 4.1 23 227-249 35-57 (158)
340 2xau_A PRE-mRNA-splicing facto 94.5 0.05 1.7E-06 64.0 7.7 23 226-248 110-132 (773)
341 1p9r_A General secretion pathw 94.5 0.037 1.3E-06 60.4 6.1 67 227-293 169-245 (418)
342 1c9k_A COBU, adenosylcobinamid 94.5 0.023 7.8E-07 54.8 3.9 32 228-260 2-33 (180)
343 3gmt_A Adenylate kinase; ssgci 94.5 0.016 5.6E-07 58.0 3.0 29 228-256 11-39 (230)
344 3eph_A TRNA isopentenyltransfe 94.5 0.018 6.1E-07 62.4 3.4 33 226-258 3-35 (409)
345 1ls1_A Signal recognition part 94.5 0.07 2.4E-06 55.3 7.8 70 224-293 97-189 (295)
346 2xxa_A Signal recognition part 94.4 0.088 3E-06 57.7 8.8 71 223-293 98-192 (433)
347 3lnc_A Guanylate kinase, GMP k 94.4 0.02 6.8E-07 56.7 3.2 24 226-249 28-52 (231)
348 1znw_A Guanylate kinase, GMP k 94.3 0.026 8.8E-07 55.0 3.7 25 226-250 21-45 (207)
349 1odf_A YGR205W, hypothetical 3 94.2 0.023 8E-07 58.9 3.5 28 223-250 29-56 (290)
350 1j8m_F SRP54, signal recogniti 94.2 0.06 2E-06 56.0 6.5 69 225-293 98-189 (297)
351 3iuy_A Probable ATP-dependent 94.2 0.12 4.3E-06 50.4 8.6 56 186-243 16-75 (228)
352 2o8b_B DNA mismatch repair pro 94.2 0.14 4.9E-06 61.9 10.6 21 226-246 790-810 (1022)
353 3b9q_A Chloroplast SRP recepto 94.1 0.04 1.4E-06 57.4 5.1 27 223-249 98-124 (302)
354 4b3f_X DNA-binding protein smu 94.1 0.065 2.2E-06 61.6 7.3 33 227-259 207-242 (646)
355 1qde_A EIF4A, translation init 94.1 0.2 6.9E-06 48.7 9.9 53 187-241 12-67 (224)
356 2v9p_A Replication protein E1; 94.1 0.033 1.1E-06 58.3 4.2 31 220-250 119-151 (305)
357 3szr_A Interferon-induced GTP- 94.0 0.073 2.5E-06 60.9 7.3 27 222-249 43-69 (608)
358 3hdt_A Putative kinase; struct 94.0 0.028 9.7E-07 56.0 3.4 29 227-255 16-44 (223)
359 1bif_A 6-phosphofructo-2-kinas 93.9 0.12 4E-06 57.2 8.6 38 225-262 39-79 (469)
360 1gtv_A TMK, thymidylate kinase 93.9 0.014 4.9E-07 56.5 1.0 23 228-250 3-25 (214)
361 3tqf_A HPR(Ser) kinase; transf 93.7 0.038 1.3E-06 53.0 3.6 27 226-253 17-43 (181)
362 2ffh_A Protein (FFH); SRP54, s 93.7 0.2 6.7E-06 54.8 9.7 70 224-293 97-189 (425)
363 3fe2_A Probable ATP-dependent 93.7 0.2 6.8E-06 49.6 9.0 18 226-243 67-84 (242)
364 1a7j_A Phosphoribulokinase; tr 93.6 0.027 9.2E-07 58.3 2.5 36 226-261 6-44 (290)
365 2og2_A Putative signal recogni 93.6 0.054 1.9E-06 57.9 4.9 27 223-249 155-181 (359)
366 3ux8_A Excinuclease ABC, A sub 93.5 0.19 6.4E-06 58.1 9.7 56 272-342 208-265 (670)
367 1m8p_A Sulfate adenylyltransfe 93.3 0.047 1.6E-06 62.0 4.2 37 225-261 396-436 (573)
368 1sq5_A Pantothenate kinase; P- 93.3 0.042 1.4E-06 57.2 3.5 25 226-250 81-105 (308)
369 4eaq_A DTMP kinase, thymidylat 93.3 0.049 1.7E-06 54.3 3.8 31 226-256 27-59 (229)
370 3bor_A Human initiation factor 93.2 0.11 3.9E-06 51.4 6.3 55 187-243 28-85 (237)
371 1t6n_A Probable ATP-dependent 93.2 0.72 2.5E-05 44.5 12.1 58 189-248 14-74 (220)
372 1np6_A Molybdopterin-guanine d 93.0 0.058 2E-06 51.6 3.7 26 224-249 5-30 (174)
373 2ged_A SR-beta, signal recogni 93.0 0.092 3.2E-06 49.5 5.0 47 197-249 26-72 (193)
374 2zj8_A DNA helicase, putative 92.9 0.21 7.3E-06 58.0 9.0 18 225-242 39-56 (720)
375 3aez_A Pantothenate kinase; tr 92.9 0.058 2E-06 56.5 3.7 25 225-249 90-114 (312)
376 3tqc_A Pantothenate kinase; bi 92.9 0.1 3.6E-06 54.8 5.7 27 224-250 91-117 (321)
377 1sky_E F1-ATPase, F1-ATP synth 92.8 0.066 2.2E-06 59.1 4.1 23 227-249 153-175 (473)
378 3p32_A Probable GTPase RV1496/ 92.8 0.14 4.9E-06 54.2 6.7 33 225-257 79-114 (355)
379 3b85_A Phosphate starvation-in 92.8 0.04 1.4E-06 54.2 2.2 23 226-248 23-45 (208)
380 1rj9_A FTSY, signal recognitio 92.6 0.067 2.3E-06 55.8 3.8 25 225-249 102-126 (304)
381 1s2m_A Putative ATP-dependent 92.6 0.3 1E-05 51.7 9.0 58 187-246 19-79 (400)
382 2j9r_A Thymidine kinase; TK1, 92.6 0.13 4.5E-06 50.8 5.7 30 228-257 31-63 (214)
383 3kta_A Chromosome segregation 92.6 0.07 2.4E-06 50.3 3.5 24 227-250 28-51 (182)
384 3pey_A ATP-dependent RNA helic 92.6 0.51 1.7E-05 49.4 10.7 21 225-245 44-64 (395)
385 2pl3_A Probable ATP-dependent 92.5 0.28 9.7E-06 48.1 8.1 53 188-242 24-79 (236)
386 2z0m_A 337AA long hypothetical 92.5 0.37 1.3E-05 49.4 9.2 33 226-258 32-64 (337)
387 2ocp_A DGK, deoxyguanosine kin 92.5 0.07 2.4E-06 53.1 3.5 26 225-250 2-27 (241)
388 1p5z_B DCK, deoxycytidine kina 92.4 0.038 1.3E-06 55.8 1.5 30 225-254 24-54 (263)
389 1b0u_A Histidine permease; ABC 92.4 0.047 1.6E-06 55.6 2.2 24 227-250 34-57 (262)
390 3ber_A Probable ATP-dependent 92.3 0.34 1.2E-05 48.4 8.5 18 226-243 81-98 (249)
391 4i1u_A Dephospho-COA kinase; s 92.3 0.14 4.9E-06 50.4 5.5 31 226-257 10-40 (210)
392 3lxw_A GTPase IMAP family memb 92.2 0.19 6.6E-06 50.3 6.5 24 226-249 22-45 (247)
393 2zu0_C Probable ATP-dependent 92.2 0.064 2.2E-06 54.8 3.0 22 227-248 48-69 (267)
394 3sqw_A ATP-dependent RNA helic 92.2 0.51 1.7E-05 53.2 10.6 57 185-241 13-76 (579)
395 1xjc_A MOBB protein homolog; s 92.1 0.09 3.1E-06 50.1 3.6 32 226-257 5-39 (169)
396 2va8_A SSO2462, SKI2-type heli 92.0 0.28 9.6E-06 56.8 8.5 22 223-244 44-65 (715)
397 3q72_A GTP-binding protein RAD 92.0 0.15 5.2E-06 46.5 5.0 21 227-247 4-24 (166)
398 2gks_A Bifunctional SAT/APS ki 92.0 0.31 1.1E-05 54.9 8.5 39 225-263 372-413 (546)
399 2qm8_A GTPase/ATPase; G protei 92.0 0.3 1E-05 51.5 7.9 24 226-249 56-79 (337)
400 3cr8_A Sulfate adenylyltranfer 91.9 0.065 2.2E-06 60.5 2.9 38 225-262 369-410 (552)
401 4edh_A DTMP kinase, thymidylat 91.9 0.13 4.3E-06 50.8 4.6 32 226-257 7-41 (213)
402 1vec_A ATP-dependent RNA helic 91.9 0.29 9.9E-06 46.8 7.1 18 226-243 41-58 (206)
403 2p6r_A Afuhel308 helicase; pro 91.9 0.31 1.1E-05 56.4 8.6 33 225-257 40-75 (702)
404 3sop_A Neuronal-specific septi 91.8 0.077 2.6E-06 54.3 3.1 23 227-249 4-26 (270)
405 1lw7_A Transcriptional regulat 91.8 0.081 2.8E-06 56.3 3.3 27 226-252 171-197 (365)
406 2ihy_A ABC transporter, ATP-bi 91.8 0.065 2.2E-06 55.2 2.5 24 227-250 49-72 (279)
407 3vkw_A Replicase large subunit 91.7 0.28 9.7E-06 53.7 7.4 23 226-248 162-184 (446)
408 2f9l_A RAB11B, member RAS onco 91.6 0.095 3.3E-06 50.1 3.2 23 227-249 7-29 (199)
409 1wp9_A ATP-dependent RNA helic 91.5 0.44 1.5E-05 50.9 8.9 32 227-258 25-60 (494)
410 2f1r_A Molybdopterin-guanine d 91.5 0.064 2.2E-06 51.1 1.9 24 226-249 3-26 (171)
411 1oix_A RAS-related protein RAB 91.5 0.09 3.1E-06 50.1 3.0 23 227-249 31-53 (191)
412 2orv_A Thymidine kinase; TP4A 91.5 0.46 1.6E-05 47.5 8.1 66 228-296 22-102 (234)
413 3i5x_A ATP-dependent RNA helic 91.2 0.59 2E-05 52.2 9.7 17 225-241 111-127 (563)
414 3ice_A Transcription terminati 91.1 0.73 2.5E-05 49.7 9.7 23 227-249 176-198 (422)
415 1xti_A Probable ATP-dependent 91.0 0.72 2.5E-05 48.3 9.7 22 226-247 46-67 (391)
416 1g8f_A Sulfate adenylyltransfe 91.0 0.099 3.4E-06 58.4 3.0 26 226-251 396-421 (511)
417 3v9p_A DTMP kinase, thymidylat 91.0 0.13 4.5E-06 51.3 3.6 32 226-257 26-64 (227)
418 2p67_A LAO/AO transport system 90.8 0.74 2.5E-05 48.4 9.6 25 225-249 56-80 (341)
419 3ly5_A ATP-dependent RNA helic 90.8 0.35 1.2E-05 48.7 6.7 18 226-243 92-109 (262)
420 2dyk_A GTP-binding protein; GT 90.8 0.13 4.5E-06 46.6 3.2 23 227-249 3-25 (161)
421 3oiy_A Reverse gyrase helicase 90.8 0.18 6.1E-06 54.0 4.8 20 226-245 37-56 (414)
422 2dpy_A FLII, flagellum-specifi 90.6 0.21 7.3E-06 54.7 5.2 25 228-252 160-184 (438)
423 1gm5_A RECG; helicase, replica 90.5 1.4 4.8E-05 51.8 12.3 35 224-258 388-425 (780)
424 2wji_A Ferrous iron transport 90.5 0.13 4.3E-06 47.6 2.8 22 227-248 5-26 (165)
425 2j0s_A ATP-dependent RNA helic 90.4 0.65 2.2E-05 49.3 8.7 56 188-245 36-94 (410)
426 1z2a_A RAS-related protein RAB 90.4 0.14 4.6E-06 46.7 2.9 23 226-248 6-28 (168)
427 1fuu_A Yeast initiation factor 90.3 1.1 3.6E-05 47.0 10.2 56 186-243 18-76 (394)
428 2fwr_A DNA repair protein RAD2 90.3 0.28 9.4E-06 53.6 5.8 33 227-259 110-142 (472)
429 2zej_A Dardarin, leucine-rich 90.3 0.11 3.8E-06 48.9 2.3 22 227-248 4-25 (184)
430 1nrj_B SR-beta, signal recogni 90.3 0.18 6.1E-06 48.7 3.8 25 225-249 12-36 (218)
431 3tmk_A Thymidylate kinase; pho 90.3 0.21 7.1E-06 49.4 4.3 29 226-254 6-34 (216)
432 1kao_A RAP2A; GTP-binding prot 90.2 0.16 5.4E-06 46.1 3.2 23 226-248 4-26 (167)
433 2ce2_X GTPase HRAS; signaling 90.2 0.15 5E-06 46.1 3.0 23 227-249 5-27 (166)
434 2bbs_A Cystic fibrosis transme 90.2 0.11 3.7E-06 53.9 2.3 30 220-249 57-88 (290)
435 3dkp_A Probable ATP-dependent 90.1 0.9 3.1E-05 44.7 9.0 17 226-242 67-83 (245)
436 2f7s_A C25KG, RAS-related prot 90.1 1 3.4E-05 43.2 9.1 23 226-248 26-48 (217)
437 1q0u_A Bstdead; DEAD protein, 90.1 0.65 2.2E-05 44.9 7.8 18 226-243 42-59 (219)
438 3tbk_A RIG-I helicase domain; 90.1 1.5 5.1E-05 48.1 11.6 23 226-248 20-42 (555)
439 1u8z_A RAS-related protein RAL 90.0 0.17 5.8E-06 45.9 3.2 23 226-248 5-27 (168)
440 3fmo_B ATP-dependent RNA helic 90.0 0.6 2.1E-05 48.1 7.8 18 225-242 131-148 (300)
441 1ek0_A Protein (GTP-binding pr 89.9 0.17 5.9E-06 46.0 3.2 23 227-249 5-27 (170)
442 2npi_A Protein CLP1; CLP1-PCF1 89.8 0.17 5.8E-06 55.9 3.5 24 226-249 139-162 (460)
443 2nzj_A GTP-binding protein REM 89.8 0.15 5.3E-06 46.8 2.8 23 226-248 5-27 (175)
444 1z0j_A RAB-22, RAS-related pro 89.8 0.18 6.1E-06 46.0 3.2 24 226-249 7-30 (170)
445 3l9o_A ATP-dependent RNA helic 89.7 0.51 1.7E-05 57.7 8.0 33 226-258 200-235 (1108)
446 2wjg_A FEOB, ferrous iron tran 89.7 0.17 5.7E-06 47.4 3.0 23 226-248 8-30 (188)
447 3eiq_A Eukaryotic initiation f 89.7 0.6 2.1E-05 49.4 7.7 18 226-243 78-95 (414)
448 2erx_A GTP-binding protein DI- 89.6 0.17 5.9E-06 46.1 3.0 22 227-248 5-26 (172)
449 1wms_A RAB-9, RAB9, RAS-relate 89.6 0.19 6.3E-06 46.4 3.2 23 226-248 8-30 (177)
450 1nij_A Hypothetical protein YJ 89.6 0.28 9.7E-06 51.1 4.9 23 227-249 6-28 (318)
451 1g16_A RAS-related protein SEC 89.6 0.18 6E-06 46.1 3.0 23 226-248 4-26 (170)
452 1z08_A RAS-related protein RAB 89.6 0.19 6.4E-06 46.0 3.2 23 226-248 7-29 (170)
453 2v6i_A RNA helicase; membrane, 89.6 0.51 1.7E-05 51.3 7.2 17 226-242 3-19 (431)
454 2vp4_A Deoxynucleoside kinase; 89.6 0.2 6.8E-06 49.5 3.6 27 227-254 22-48 (230)
455 1ky3_A GTP-binding protein YPT 89.4 0.19 6.6E-06 46.3 3.2 23 226-248 9-31 (182)
456 4ag6_A VIRB4 ATPase, type IV s 89.4 0.31 1.1E-05 52.1 5.3 25 225-249 35-59 (392)
457 4a2p_A RIG-I, retinoic acid in 89.4 1.4 4.8E-05 48.6 10.7 23 226-248 23-45 (556)
458 3q85_A GTP-binding protein REM 89.4 0.18 6E-06 46.2 2.8 21 227-247 4-24 (169)
459 1r2q_A RAS-related protein RAB 89.4 0.2 6.9E-06 45.5 3.2 23 226-248 7-29 (170)
460 1c1y_A RAS-related protein RAP 89.3 0.21 7E-06 45.4 3.2 22 227-248 5-26 (167)
461 1ko7_A HPR kinase/phosphatase; 89.3 0.21 7.3E-06 52.2 3.7 28 226-254 145-172 (314)
462 2wsm_A Hydrogenase expression/ 89.3 0.31 1.1E-05 47.1 4.7 25 226-250 31-55 (221)
463 3lv8_A DTMP kinase, thymidylat 89.3 0.2 6.8E-06 50.2 3.3 28 225-252 27-57 (236)
464 1svi_A GTP-binding protein YSX 89.2 0.16 5.4E-06 47.9 2.4 24 225-248 23-46 (195)
465 2gk6_A Regulator of nonsense t 89.2 0.17 5.9E-06 57.9 3.2 32 227-258 197-232 (624)
466 3bc1_A RAS-related protein RAB 89.1 0.21 7.2E-06 46.6 3.2 23 226-248 12-34 (195)
467 2hxs_A RAB-26, RAS-related pro 89.1 0.22 7.4E-06 46.0 3.3 23 226-248 7-29 (178)
468 2gj8_A MNME, tRNA modification 89.1 0.18 6.3E-06 47.0 2.8 23 226-248 5-27 (172)
469 2lkc_A Translation initiation 89.0 0.26 8.9E-06 45.4 3.7 24 225-248 8-31 (178)
470 1r8s_A ADP-ribosylation factor 89.0 0.22 7.7E-06 45.2 3.2 21 228-248 3-23 (164)
471 1f2t_A RAD50 ABC-ATPase; DNA d 88.9 0.22 7.5E-06 46.0 3.1 23 227-249 25-47 (149)
472 1knx_A Probable HPR(Ser) kinas 88.9 0.22 7.5E-06 52.1 3.4 29 225-254 147-175 (312)
473 1z0f_A RAB14, member RAS oncog 88.8 0.23 7.9E-06 45.7 3.2 24 226-249 16-39 (179)
474 2y8e_A RAB-protein 6, GH09086P 88.8 0.22 7.4E-06 45.9 3.0 23 226-248 15-37 (179)
475 1upt_A ARL1, ADP-ribosylation 88.8 0.28 9.6E-06 44.8 3.8 24 225-248 7-30 (171)
476 3clv_A RAB5 protein, putative; 88.7 0.23 7.9E-06 46.5 3.2 24 225-248 7-30 (208)
477 4dsu_A GTPase KRAS, isoform 2B 88.7 0.24 8.1E-06 46.1 3.2 24 226-249 5-28 (189)
478 3con_A GTPase NRAS; structural 88.6 0.24 8.1E-06 46.5 3.2 23 227-249 23-45 (190)
479 3ld9_A DTMP kinase, thymidylat 88.6 0.26 8.8E-06 49.0 3.5 26 225-250 21-46 (223)
480 2fn4_A P23, RAS-related protei 88.6 0.23 7.7E-06 45.8 3.0 23 226-248 10-32 (181)
481 1pui_A ENGB, probable GTP-bind 88.6 0.11 3.7E-06 49.8 0.8 24 226-249 27-50 (210)
482 3e2i_A Thymidine kinase; Zn-bi 88.5 1.1 3.8E-05 44.3 8.0 30 228-257 31-63 (219)
483 2a9k_A RAS-related protein RAL 88.5 0.25 8.4E-06 45.8 3.2 23 226-248 19-41 (187)
484 2qag_B Septin-6, protein NEDD5 88.5 0.22 7.5E-06 54.4 3.2 21 228-248 45-65 (427)
485 3t1o_A Gliding protein MGLA; G 88.5 0.25 8.5E-06 46.3 3.3 24 226-249 15-38 (198)
486 2oil_A CATX-8, RAS-related pro 88.5 0.25 8.5E-06 46.6 3.2 23 226-248 26-48 (193)
487 2efe_B Small GTP-binding prote 88.4 0.25 8.5E-06 45.7 3.2 23 226-248 13-35 (181)
488 2obl_A ESCN; ATPase, hydrolase 88.4 0.32 1.1E-05 51.6 4.3 25 228-252 74-98 (347)
489 1m7b_A RND3/RHOE small GTP-bin 88.3 0.24 8.2E-06 46.4 3.0 23 226-248 8-30 (184)
490 1tq4_A IIGP1, interferon-induc 88.3 0.31 1E-05 53.0 4.2 22 227-248 71-92 (413)
491 1dek_A Deoxynucleoside monopho 88.2 0.18 6.2E-06 50.8 2.2 26 228-253 4-29 (241)
492 4ddu_A Reverse gyrase; topoiso 88.2 0.87 3E-05 55.6 8.6 20 226-245 94-113 (1104)
493 2bme_A RAB4A, RAS-related prot 88.2 0.25 8.5E-06 46.0 3.0 23 226-248 11-33 (186)
494 4tmk_A Protein (thymidylate ki 88.2 0.24 8.1E-06 48.9 2.9 24 226-249 4-27 (213)
495 3tw8_B RAS-related protein RAB 88.1 0.24 8.3E-06 45.6 2.9 23 226-248 10-32 (181)
496 2g6b_A RAS-related protein RAB 88.0 0.28 9.7E-06 45.3 3.2 24 226-249 11-34 (180)
497 2cxx_A Probable GTP-binding pr 87.9 0.22 7.6E-06 46.4 2.5 22 227-248 3-24 (190)
498 2atv_A RERG, RAS-like estrogen 87.9 0.3 1E-05 46.3 3.4 24 225-248 28-51 (196)
499 3pih_A Uvrabc system protein A 87.9 1.2 4E-05 53.3 9.1 65 274-360 813-880 (916)
500 3kkq_A RAS-related protein M-R 87.9 0.28 9.7E-06 45.5 3.2 23 226-248 19-41 (183)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.4e-88 Score=757.74 Aligned_cols=457 Identities=48% Similarity=0.833 Sum_probs=386.6
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
.+.++|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
+|.+..+++.+|..|+..+||||||||+|.++.+++.+ ..+.+++..+++++|+.+||++....+++||++||+++.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc-cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999998876532 34556778899999999999988888999999999999999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~ 425 (680)
++++||||||+.+.+++|+.++|.+|++.++++..+..+.+ +..++..++|++|+||.++|++|++.|.++++..|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 99999999999999999999999999999999887765555 4779999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccC-ccccCCHHH
Q 005738 426 QHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLMTKEQ 504 (680)
Q Consensus 426 ~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~-~~~~~tk~~ 504 (680)
+||..|+++++.|.+++...+++.+++.++|||+|||+++|++++++++++++|+|||..++||+++.|. |.+++||++
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~ 326 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNE 326 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHH
T ss_pred HHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHH
Confidence 9999999999998887777889999999999999999999999999999999999999569999999997 678999999
Q ss_pred HHHhhHhhhhhHHHHHHHcCCcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCCc------cccCCCCChhHHH
Q 005738 505 LFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDT------FEMTKPYSSKTGA 578 (680)
Q Consensus 505 l~~~i~v~LgGraAEel~fg~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~~------~~~~~~~s~~~~~ 578 (680)
|+++|+++|||||||+++||++||||+|||++||+||+.||++||||+++|+++|...++. +...++||++|++
T Consensus 327 l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 406 (476)
T 2ce7_A 327 LLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVAS 406 (476)
T ss_dssp HHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHH
T ss_pred HHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999764432 2235789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCCCCCCCCchHHhhhc
Q 005738 579 IIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPFKHSEPTNYDRFKKG 647 (680)
Q Consensus 579 ~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~~~~~~~~~~~~~~~ 647 (680)
.||+||+++|++||++|++||++||+.|++||++|+++|+|+++||++|++. |+... ..+|+.+..+
T Consensus 407 ~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 473 (476)
T 2ce7_A 407 KIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE-EFEKV-VEAAALEHHH 473 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc-cccch-hHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999988 77653 5677776654
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-86 Score=745.02 Aligned_cols=459 Identities=51% Similarity=0.833 Sum_probs=416.2
Q ss_pred CCccccccccceeeecccCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHH
Q 005738 167 GRGIFNIGKATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATA 246 (680)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA 246 (680)
+++.|++++++++.+... +.++|+||+|++++|+++++++.+++++..|..++.++|+|+||+||||||||+||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 8 SDSAFSFTKSRARVLTEA--PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp ----------CCEEECSC--CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCcccCcceeeccC--CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 346899999999887653 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC
Q 005738 247 GESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF 326 (680)
Q Consensus 247 ~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~ 326 (680)
++++.+|+.++++++.+.++|....+++.+|+.+....|||+||||||.++..++.+ ..+.+++..+++++++.+|+++
T Consensus 86 ~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~-~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp HHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS-TTTSSHHHHHHHHHHHHHGGGC
T ss_pred HHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC-cCCCcHHHHHHHHHHHHHhccc
Confidence 999999999999999999999888999999999988899999999999998766432 2344677889999999999999
Q ss_pred CCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHH
Q 005738 327 GTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIAN 406 (680)
Q Consensus 327 ~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~ 406 (680)
..+..++++++||+|+.||++++||||||+++.+++|+.++|.+||+.|+++..+..+.+. ..++..++|++|+||++
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l--~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL--ALLAKRTPGFVGADLEN 242 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTT--HHHHTTSCSCCHHHHHH
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHH--HHHHHhcCCCCHHHHHH
Confidence 8888899999999999999999999999999999999999999999999987766655554 78999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCc
Q 005738 407 VCNEAALIAARNESAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAA 486 (680)
Q Consensus 407 lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~ 486 (680)
+|++|++.|.++++..|+.+||.+|+++++.+.+++...+++.+++.++|||+||||++|+++++++|+++||+|||+ +
T Consensus 243 lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~-~ 321 (499)
T 2dhr_A 243 LLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR-A 321 (499)
T ss_dssp HHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSC-T
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCC-c
Confidence 999999999988888999999999999999998877788999999999999999999999999999999999999996 8
Q ss_pred cceeecccC--ccccCCHHHHHHhhHhhhhhHHHHHHHcCCcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCC
Q 005738 487 LGFAQYVPN--ENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDD 564 (680)
Q Consensus 487 ~G~~~~~~~--~~~~~tk~~l~~~i~v~LgGraAEel~fg~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~ 564 (680)
+||++ |. +.+++||.+|+++|+++|||||||+++||++||||+|||++||+||+.||++||||+++|+++|...++
T Consensus 322 ~g~~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~ 399 (499)
T 2dhr_A 322 LGFMM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED 399 (499)
T ss_dssp TCSSH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC
T ss_pred Ccccc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc
Confidence 99998 54 678999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred cccc---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCC
Q 005738 565 TFEM---TKPYSSKTGAIIDNEVREWVGKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPF 633 (680)
Q Consensus 565 ~~~~---~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~ 633 (680)
.+.. .++||++|++.||+||+++|++||++|++||++||+.|++||++|+|+|+|+++||++|++.++.
T Consensus 400 ~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 400 TYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp CSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 2211 57899999999999999999999999999999999999999999999999999999999987654
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-52 Score=455.32 Aligned_cols=251 Identities=40% Similarity=0.712 Sum_probs=237.0
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
+.|.++|+||+|++++|++|++.|.+ +++|+.|+.+|.++|+|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|+|.+++.++.+|..|+.++||||||||||+++++|..++ ++++.+..+++++||.+||++....+|+||+|||+|+.
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999998886532 23455678899999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
|||||+||||||++|+|++|+.++|.+||+.|+++..+..++++ +.||..|+|||||||.++|++|++.|.++++..|
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl--~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~v 377 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL--RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHV 377 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999888766664 8999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcc
Q 005738 424 TMQHFEAAIDRVIGG 438 (680)
Q Consensus 424 t~~d~~~Al~~v~~g 438 (680)
+++||+.|+++++..
T Consensus 378 t~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 378 TQEDFELAVGKVMNK 392 (405)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCc
Confidence 999999999998754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-51 Score=448.43 Aligned_cols=253 Identities=42% Similarity=0.709 Sum_probs=238.0
Q ss_pred ccCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 183 MNAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 183 ~~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
....+.++|+||+|++++|++|++.+.+ +++|+.|+.+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 3457899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 262 MEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.++|+|.+++.++.+|..|+.++||||||||+|+++.+|..++ ..++.+..+++++||.+||++....+|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 9999999999999999999999999999999999999886543 334556788999999999999999999999999999
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESA 421 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~ 421 (680)
+.|||||+||||||++|+|++||.++|.+||+.|+++..++.++++ +.||..|+|||||||.++|++|++.|.++++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl--~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL--ETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999887766664 89999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcc
Q 005738 422 QITMQHFEAAIDRVIGG 438 (680)
Q Consensus 422 ~It~~d~~~Al~~v~~g 438 (680)
.|+++||..|+++++.+
T Consensus 410 ~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKN 426 (437)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCC
Confidence 99999999999998754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-51 Score=448.53 Aligned_cols=256 Identities=40% Similarity=0.727 Sum_probs=239.9
Q ss_pred cCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
.+.|.++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 356889999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
++|+|.+++.++.+|..|+.++||||||||+|+++.+|+.++ ++.......+++++|.+||++....+|+||+|||+|+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 999999999999999999999999999999999998886432 2345567789999999999999999999999999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQ 422 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~ 422 (680)
.|||||+||||||++|+|++|+.++|.+||+.|+++..+..++++ +.||..|+|||||||.++|++|++.|.++++..
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl--~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~ 437 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW--ELISRLCPNSTGAELRSVCTEAGMFAIRARRKV 437 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999888766664 889999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcccccc
Q 005738 423 ITMQHFEAAIDRVIGGLEKK 442 (680)
Q Consensus 423 It~~d~~~Al~~v~~g~~~~ 442 (680)
|+.+||..|+++++.|.++.
T Consensus 438 it~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 438 ATEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp BCHHHHHHHHHHHHHHHCC-
T ss_pred cCHHHHHHHHHHHhcCcccc
Confidence 99999999999999887653
No 6
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.8e-52 Score=422.47 Aligned_cols=201 Identities=32% Similarity=0.552 Sum_probs=164.6
Q ss_pred hccccccchhhccccccchhhhhchhhhhccccccCCCeeEEEEeeCCCCccceeecccC-ccccCCHHHHHHhhHhhhh
Q 005738 436 IGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLMTKEQLFDMTCMTLG 514 (680)
Q Consensus 436 ~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~~~~~~kvti~prg~~~~G~~~~~~~-~~~~~tk~~l~~~i~v~Lg 514 (680)
++|++++++.+++.+++++||||||||||+|++++++||+||||+|||. ++|||++.|. |++++||++|+++|+|+||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~-alG~t~~~P~ed~~~~tk~~l~~~i~v~Lg 79 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGM-ALGVTQQLPIEDKHIYDKKDLYNKILVLLG 79 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------CCCCBHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCC-cceEEEeCCcccccccCHHHHHHHHHHHHh
Confidence 3578888889999999999999999999999999999999999999996 9999999997 6789999999999999999
Q ss_pred hHHHHHHHc--CCcccccccHHHHHHHHHHHhhhhcccCCCccceeccCCCCcc----ccCCCCChhHHHHHHHHHHHHH
Q 005738 515 GRAAEQVLL--GKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRDDTF----EMTKPYSSKTGAIIDNEVREWV 588 (680)
Q Consensus 515 GraAEel~f--g~~stGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~~~~~----~~~~~~s~~~~~~id~ev~~ll 588 (680)
|||||+++| |++||||+|||++||+||+.||++||||+++|+++|...++.| ...++||++|++.||+||+++|
T Consensus 80 GRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il 159 (238)
T 2di4_A 80 GRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRII 159 (238)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHH
Confidence 999999999 7899999999999999999999999999999999997644322 2368999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHccccCHHHHHHHHcCCCCCCCC
Q 005738 589 GKAYDHTVKLIEEHREHVAQIAEELLEKEVLHQDDLVRVLGERPFKHSE 637 (680)
Q Consensus 589 ~~a~~~a~~iL~~~r~~l~~la~~Lleke~l~~~ei~~il~~~p~~~~~ 637 (680)
++||++|++||++||+.|++||++||++|||+++||.+|++..+...++
T Consensus 160 ~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~~~~~ 208 (238)
T 2di4_A 160 TEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIELKD 208 (238)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCCCchh
Confidence 9999999999999999999999999999999999999999988776643
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-50 Score=443.53 Aligned_cols=251 Identities=40% Similarity=0.672 Sum_probs=235.0
Q ss_pred cCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|+.+|.++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 356889999999999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
++|+|.+++.++.+|..|+.++||||||||+|+++.+|..+. .+++.....++++||.+||++....+|+||+|||+|+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999998885432 2345567789999999999999999999999999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQ 422 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~ 422 (680)
.|||||+||||||++|+|++|+.++|.+||+.|+++..++.++++ ..||..|+||||+||.++|++|++.|.++++..
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl--~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~ 409 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW--QELARSTDEFNGAQLKAVTVEAGMIALRNGQSS 409 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH--HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999888776664 899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 005738 423 ITMQHFEAAIDRVIG 437 (680)
Q Consensus 423 It~~d~~~Al~~v~~ 437 (680)
|+.+||..|++++..
T Consensus 410 i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 410 VKHEDFVEGISEVQA 424 (434)
T ss_dssp BCHHHHHHHHHSCSS
T ss_pred cCHHHHHHHHHHHhC
Confidence 999999999987654
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-50 Score=440.85 Aligned_cols=251 Identities=39% Similarity=0.668 Sum_probs=236.0
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|+|.+++.++.+|..|+.++||||||||+|+++.+|..++ ...+.....++++||.+||++....+|+||+|||+|+.
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 99999999999999999999999999999999999886543 23455677899999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
|||||+||||||++|+|++|+.++|.+||+.|+++..+..+.++ ..+|..|+||||+||.++|++|++.|.++++..|
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl--~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i 410 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF--EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHI 410 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH--HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999887766664 8999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcc
Q 005738 424 TMQHFEAAIDRVIGG 438 (680)
Q Consensus 424 t~~d~~~Al~~v~~g 438 (680)
+.+||..|++++...
T Consensus 411 ~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 411 NPDDLMKAVRKVAEV 425 (437)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988643
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-49 Score=434.99 Aligned_cols=250 Identities=41% Similarity=0.645 Sum_probs=234.7
Q ss_pred cCCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 184 NAKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 184 ~~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 356789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
++|+|.++..++.+|..|+.++||||||||+|+++.+|.... .+++.+..+++++||.+||++....+|+||+|||+|+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999999886433 3445567889999999999999999999999999999
Q ss_pred CCchhhcCCCccccccccC-CCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 005738 343 ILDKALLRPGRFDRQITID-KPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESA 421 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~-~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~ 421 (680)
.|||||+||||||+.|+|| +|+.++|.+||+.|+++..+..+.++ +.||..|+|||||||.++|++|++.|.++++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl--~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~ 400 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL--DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY 400 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH--HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999996 89999999999999999887766664 89999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHh
Q 005738 422 QITMQHFEAAIDRVI 436 (680)
Q Consensus 422 ~It~~d~~~Al~~v~ 436 (680)
.|+.+||++|+.+++
T Consensus 401 ~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 401 VILQSDLEEAYATQV 415 (428)
T ss_dssp SBCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998765
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-43 Score=413.04 Aligned_cols=287 Identities=38% Similarity=0.660 Sum_probs=244.5
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++|++|++.+.+ |++|+.|+.+|.++|+|+|||||||||||+|||++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34689999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|.|.+++.++.+|..|+.++||||||||||+|+++|+.. .+....+++++|+.+||++..+.+|+||++||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999887532 234456899999999999998899999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc----
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE---- 419 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~---- 419 (680)
||++|+||||||+.|+++.|+.++|.+||+.|+++..+..++++ ..+|..|+||+|+||.++|++|++.|.++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl--~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999887776664 899999999999999999999999988763
Q ss_pred -------------CCcccHHHHHHHHHHHhccccccchhhccccccchhhhhch---------hhhhccccccCCCeeEE
Q 005738 420 -------------SAQITMQHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESG---------HAVAGWFLEHAEPLLKV 477 (680)
Q Consensus 420 -------------~~~It~~d~~~Al~~v~~g~~~~~~~l~~~e~~~va~hEaG---------havv~~~l~~~~~~~kv 477 (680)
...|+.+||..|+..+.....+.. ..+...+.+++.| +-.+.|++.+++.+.+.
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~----~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~ 506 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET----VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF 506 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCC----CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS
T ss_pred cccccccchhhhccceeeHHHHHHHHHhCCCcccccc----cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 235888999999987643321111 0111122333322 23456777777766655
Q ss_pred EEee
Q 005738 478 TIVP 481 (680)
Q Consensus 478 ti~p 481 (680)
.+.|
T Consensus 507 g~~~ 510 (806)
T 3cf2_A 507 GMTP 510 (806)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5544
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-44 Score=420.52 Aligned_cols=231 Identities=40% Similarity=0.745 Sum_probs=186.6
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999988 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+|+|.+++.++.+|..|+.++||||||||||+|+++|+... +..+....+++++||.+||++....+|+||+|||+|+.
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999885321 12344566899999999999999999999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
||+|++||||||++|+|++|+.++|.+||+.|+++.++..++++ ..||..|.||||+||.++|++|++.|.|+
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl--~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC------------------CHHHHHHHHHHHHHHH
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887766654 88999999999999999999999999886
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4.6e-38 Score=323.58 Aligned_cols=251 Identities=59% Similarity=1.029 Sum_probs=224.8
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
.+..+|+||+|++++++.+.+++.++.++..|..+|...|+|++|+||||||||++|+++|++++.|++.++++++.+.+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
.|.+...++.+|+.+....|+++||||+|.++..+... ..+...+..+.+++++..++++....+++||++||+++.+|
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTT-SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCC-cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 99999999999999999899999999999998766432 23345566788999999999988888999999999999999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITM 425 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~ 425 (680)
++++|||||++.+.++.|+.++|.+|++.++++..+..+.+ ...++..++||+++||.++|++|+..|.++++..|+.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~--~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID--AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 99999999999999999999999999999998877665544 3779999999999999999999999999999899999
Q ss_pred HHHHHHHHHHhccc
Q 005738 426 QHFEAAIDRVIGGL 439 (680)
Q Consensus 426 ~d~~~Al~~v~~g~ 439 (680)
+||..|++++..|+
T Consensus 243 ~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 243 VEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999987765
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=9.6e-39 Score=327.89 Aligned_cols=260 Identities=60% Similarity=0.939 Sum_probs=207.5
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
+++|+||+|++++|+.|++++..+.+++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchh
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKA 347 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~a 347 (680)
.+...++.+|..+....|+||||||+|.+..++........+.+....+++++..+++.....+++||++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 88889999999999999999999999999876643221222345567889999999988777899999999999999999
Q ss_pred hcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHH
Q 005738 348 LLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQH 427 (680)
Q Consensus 348 LlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d 427 (680)
++|||||++.++++.|+.++|.+|++.+++...+..+.+.....++..+.|++++||.++|++|+..|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 99999999999999999999999999999988776665554578999999999999999999999999988889999999
Q ss_pred HHHHHHHHhccccccchhhc
Q 005738 428 FEAAIDRVIGGLEKKNKVIS 447 (680)
Q Consensus 428 ~~~Al~~v~~g~~~~~~~l~ 447 (680)
|..|++++..+..++.+.++
T Consensus 242 ~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 242 FEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp HHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhccChhhhhHhhc
Confidence 99999999887766554443
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=329.44 Aligned_cols=246 Identities=37% Similarity=0.641 Sum_probs=204.6
Q ss_pred CCcccccccccchHHHHHHHHHH-HHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFV-HFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.+.++|+||+|++++|++|.+.+ ..+.+++.|+.++..+|+|++|+||||||||+|++++|++++.+++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999865 45999999999999999999999999999999999999999999999999999888
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+.+..++.++.+|+.++...||++|+||+|.++..++... .....+.+++++.+|++...+..++++++||+|+.|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 8888888999999999889999999999999876553211 112235789999999999888889999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcc---cCCCCcchhHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhc
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL---KLDNEPSFYSQRLAALTP--GFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~---~l~~~~d~~l~~la~~t~--G~sgadL~~lv~eAa~~a~r~~ 419 (680)
|++++||||||+.|++++|+.++|.+||+.++++. .+..+. ++..+|..+. ||||+||.++|++|++.|.++.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~ 237 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADV--NLEAIAGDLRCDCYTGADLSALVREASICALRQE 237 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTC--CHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCcccc--CHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998642 233333 4588998754 9999999999999999988752
Q ss_pred -----------CCcccHHHHHHHHHHHhc
Q 005738 420 -----------SAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 420 -----------~~~It~~d~~~Al~~v~~ 437 (680)
...|+++||+.|++++..
T Consensus 238 ~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 238 MARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp C-----------CCBCHHHHHHHHTTCCC
T ss_pred HhhccccccccCCeecHHHHHHHHHHhcC
Confidence 346999999999987654
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=326.55 Aligned_cols=247 Identities=40% Similarity=0.713 Sum_probs=219.0
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.+.++|+||+|++++++.|++.+.. +++|+.|..+|...++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
++|..+..++.+|..+....||||||||+|.+...++.... .......+++++||..|+++....+++||++||+++.|
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999987753211 11122345788999999998878889999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcC----
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNES---- 420 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~---- 420 (680)
|++++|||||++.++++.|+.++|.+|++.++++..+..+.+ +..++..+.||+|+||.++|++|+..|.++..
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~ 245 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 245 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999877655444 47899999999999999999999988875421
Q ss_pred ---------------------CcccHHHHHHHHHHH
Q 005738 421 ---------------------AQITMQHFEAAIDRV 435 (680)
Q Consensus 421 ---------------------~~It~~d~~~Al~~v 435 (680)
..|+.+||..|+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 246 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTC
T ss_pred hhhhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 358888999998764
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3e-36 Score=313.92 Aligned_cols=250 Identities=44% Similarity=0.774 Sum_probs=229.0
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++++.|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999998877 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.+.|.....++.+|..+....|+||||||+|.+..++... ..+.....+..+.+++..++++....+++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA-LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSS-CCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccc-cCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 9999989999999999999999999999999998776432 223455677899999999998888889999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQI 423 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~I 423 (680)
+|++++|++||++.+.++.|+.++|.+|++.+++...+..+.+ +..++..+.|++++||.++|++|...|.++++..|
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I 246 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN--LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYV 246 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcC
Confidence 9999999999999999999999999999999998877665554 48899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 005738 424 TMQHFEAAIDRVIG 437 (680)
Q Consensus 424 t~~d~~~Al~~v~~ 437 (680)
+.+|+..|++++..
T Consensus 247 ~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 247 TMDDFRKAVEKIME 260 (285)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998864
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=316.07 Aligned_cols=225 Identities=36% Similarity=0.579 Sum_probs=200.9
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCCeEEeechhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSMSGSDFME 263 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-~~~~i~is~s~~~~ 263 (680)
.+.++|+||+|++++|+.|++.+.+ +++|+.|.. +..+|+|+||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4678999999999999999998876 888888763 35677999999999999999999999999 89999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCCeEEEeccCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-TTAGVVVLAGTNRPD 342 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-~~~~ViVIaaTN~~~ 342 (680)
.+.|..+..++.+|..++..+|+||||||+|.+..++.. .......+.+++++..|+++. ...+++||++||+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS----CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc----ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999877643 234456778999999999986 367899999999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
.+|++++| ||++.+++++|+.++|.+|++.++++.....+ +.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999987765432 344689999999999999999999999988875
No 18
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=3.7e-35 Score=301.39 Aligned_cols=245 Identities=63% Similarity=1.009 Sum_probs=217.2
Q ss_pred CCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
..+.++|+|++|+++++.++++++..+.++..+..++..+|+|++|+||||||||+|++++++.++.+++.+++.++.+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 45678999999999999999999999989999999999999999999999999999999999999999999999999888
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+.+.....++.+|+.+....|++++|||+|.++..+..+ ....+.+..+.+++++.+|++......++++++||+|+.|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 887777888999999988889999999999998765421 1233556678899999999998777789999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQIT 424 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It 424 (680)
|++++|++||++.+.++.|+.++|.+|++.+++...+..+.+ +..++..++|++|+||.++|++|+..|.++++..|+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD--LALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999999999999998776665554 478999999999999999999999999988888999
Q ss_pred HHHHHHHH
Q 005738 425 MQHFEAAI 432 (680)
Q Consensus 425 ~~d~~~Al 432 (680)
.+|+++|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 19
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=8.9e-35 Score=303.03 Aligned_cols=260 Identities=60% Similarity=0.966 Sum_probs=220.8
Q ss_pred CccccccccceeeecccCCCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHH
Q 005738 168 RGIFNIGKATITKMDMNAKDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~ 247 (680)
+..+.+.++....+. ..+.++|+|++|++++++++.+++..+.++..+..++..+|+|++|+||||||||+|++++++
T Consensus 18 ~~~~~~~~~~~~~~~--~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 18 DSAFSFTKSRARVLT--EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp --------CCCCCBC--CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccccccccccccc--CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 344566666555443 347899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 005738 248 ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG 327 (680)
Q Consensus 248 e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~ 327 (680)
.++.+++.+++.++.+.+.+.....++.+|+.+....|+++|+||+|.++..+..+ ....+.+..+.+++++.+|++..
T Consensus 96 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp HTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCC
T ss_pred HcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999888877777888999999988889999999999998665321 12234566788999999999987
Q ss_pred CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHH
Q 005738 328 TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANV 407 (680)
Q Consensus 328 ~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~l 407 (680)
....++++++||+|+.||++++|++||++.+.++.|+.++|.+||+.+++...+..+.+ +..++..++|++++||.++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~G~~~~dl~~l 252 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD--LALLAKRTPGFVGADLENL 252 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC--HHHHHHHcCCCCHHHHHHH
Confidence 77789999999999999999999999999999999999999999999998776655554 4789999999999999999
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 408 CNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 408 v~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
|++|+..|.++++..|+.+|+++|+
T Consensus 253 ~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 253 LNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999998888899999999885
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.7e-35 Score=313.79 Aligned_cols=226 Identities=39% Similarity=0.618 Sum_probs=197.6
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+||+|++++|+.|.+.+.+ ++.|+.+.. +..+++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 35678999999999999999998876 777777765 5677899999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCCeEEEeccCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-TTAGVVVLAGTNRPD 342 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-~~~~ViVIaaTN~~~ 342 (680)
.++|..+..++.+|..++...|+||||||||.+..+++.+ .......+.++++..|+++. ...+++||++||+++
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 9999999999999999999999999999999998766432 22334567889999999874 567899999999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
.||++++| ||++.+++++|+.++|.+|++.++++.....+ +..+..|+..+.||+|+||.++|++|+..|.++
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999987665433 334689999999999999999999999888875
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=6.5e-37 Score=316.43 Aligned_cols=251 Identities=63% Similarity=1.020 Sum_probs=216.2
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
.+.++|+||+|++++++.|.+++..+..++.|..++...|+|+||+||||||||++|+++|++++.|++.++++++.+.+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC-CCeEEEeccCCCCCC
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT-AGVVVLAGTNRPDIL 344 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~-~~ViVIaaTN~~~~L 344 (680)
.|.+...++.+|..+....|+||||||+|.+...+..++....+....+.+++|+..++++... ..++||++||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 9988888889999999999999999999999876533222222333345678889899887543 459999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQIT 424 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It 424 (680)
|++++|+|||+..+.++.|+.++|.+||+.+++...+..+.+ +..++..+.|++|+||.++|++|+..|.++++..|+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN--LQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC--TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 999999999999999999999999999999998776654444 367899999999999999999999998877788999
Q ss_pred HHHHHHHHHHHhcc
Q 005738 425 MQHFEAAIDRVIGG 438 (680)
Q Consensus 425 ~~d~~~Al~~v~~g 438 (680)
.+|+..|+.++...
T Consensus 243 ~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 243 QQHLKEAVERGIAG 256 (268)
T ss_dssp HHHHHTSCTTCCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998765443
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.4e-34 Score=310.83 Aligned_cols=225 Identities=40% Similarity=0.620 Sum_probs=193.1
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.+.++|+||+|++++++.|.+.+.. ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 4578999999999999999998876 788888776 66788999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC-CCCeEEEeccCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT-TAGVVVLAGTNRPDI 343 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~-~~~ViVIaaTN~~~~ 343 (680)
+.|..+..++.+|..++...|+||||||+|.+...++. +.......++++|+..|+++.. ..+++||++||+++.
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE----GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC----CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 99999999999999999999999999999999876642 2344556788999999998754 568999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
||++++| ||++.+++++|+.++|.+||+.+++......+ +.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999987654332 344688999999999999999999999998875
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.8e-34 Score=322.24 Aligned_cols=245 Identities=41% Similarity=0.694 Sum_probs=222.6
Q ss_pred CcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
..++|++|+|++++++.|.+.+.. +++++.|..+|...|+++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 356899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
.|.....++.+|..|....|++|||||||.+..+++. ...+....++++|+..|++.....+++||++||+++.||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~----~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS----CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc----ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999876642 234455678999999999988888999999999999999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC----
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESA---- 421 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~---- 421 (680)
++++|+|||++.+.++.|+.++|.+||+.+++...+..+.+ +..++..+.||+++||.++|++|+..|.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~--l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD--LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh--HHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999887765554 488999999999999999999999999887533
Q ss_pred -------------cccHHHHHHHHHHHhc
Q 005738 422 -------------QITMQHFEAAIDRVIG 437 (680)
Q Consensus 422 -------------~It~~d~~~Al~~v~~ 437 (680)
.|+++||..|+..+..
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHH
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCc
Confidence 4899999999987643
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4e-33 Score=309.98 Aligned_cols=226 Identities=36% Similarity=0.581 Sum_probs=190.4
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCCeEEeechhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSMSGSDFM 262 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-~~~~i~is~s~~~ 262 (680)
..+.++|+||+|++++++.|.+.+.. +++|..|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 45688999999999999999998865 777777663 35677999999999999999999999999 8999999999999
Q ss_pred hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCCeEEEeccCCC
Q 005738 263 EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-TTAGVVVLAGTNRP 341 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-~~~~ViVIaaTN~~ 341 (680)
+.++|..+..++.+|..++...|+||||||||.+...+.. ........++++||..|+++. ...+++||++||+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSC----CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCC----ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 9999999999999999999999999999999999876643 233445678999999999975 36789999999999
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
+.||++++| ||++.+.+++|+.++|.+||+.+++......+ +.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999987654322 345689999999999999999999999988875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.4e-31 Score=287.41 Aligned_cols=243 Identities=35% Similarity=0.554 Sum_probs=208.6
Q ss_pred CcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
+.++|+||+|++++++.|.+.+.. +..+..|...+ ..++++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 567899999999999999999876 77777776654 6789999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--CCCCeEEEeccCCCCC
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--TTAGVVVLAGTNRPDI 343 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--~~~~ViVIaaTN~~~~ 343 (680)
.|.....++.+|..+....|+||||||||.+...+.. +.+......+++++..+++.. ...+++||++||+++.
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 9988899999999999999999999999999876532 234456678899999999864 3467999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc----
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE---- 419 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~---- 419 (680)
||++++| ||+..+.++.|+.++|.+|++.+++......+ +..+..++..+.||+++||.++|++|+..+.++-
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS-EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999 99999999999999999999999987654433 3346889999999999999999999998888742
Q ss_pred --------CCcccHHHHHHHHHHHhc
Q 005738 420 --------SAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 420 --------~~~It~~d~~~Al~~v~~ 437 (680)
...|+.+||..|+.++..
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCC
Confidence 357999999999988754
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=8.3e-32 Score=282.26 Aligned_cols=242 Identities=38% Similarity=0.600 Sum_probs=204.8
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
.+.++|+|++|++++++.|.+.+.. +.+|+.|..++ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3568999999999999999998876 66777776654 457899999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCC---CCeEEEeccCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTT---AGVVVLAGTNRP 341 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~---~~ViVIaaTN~~ 341 (680)
+.|.+...++.+|..+....|+||||||+|.+...+... .........++++..++++... .+++||++||++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC----cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 999999999999999999999999999999998765421 1222345677888888877543 579999999999
Q ss_pred CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc--
Q 005738 342 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE-- 419 (680)
Q Consensus 342 ~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~-- 419 (680)
+.+|++++| ||+..+.+++|+.++|..|++.+++......+ +..+..++..+.|++++||.++|++|+..+.++.
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 99999999999999999999999987654433 2346889999999999999999999999998864
Q ss_pred ----------CCcccHHHHHHHHHHH
Q 005738 420 ----------SAQITMQHFEAAIDRV 435 (680)
Q Consensus 420 ----------~~~It~~d~~~Al~~v 435 (680)
...|+.+||..|+.++
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSC
T ss_pred hhcccccccccCCcCHHHHHHHHHHc
Confidence 2579999999998754
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=5.7e-34 Score=337.69 Aligned_cols=232 Identities=40% Similarity=0.742 Sum_probs=201.9
Q ss_pred CCCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
..+.++|+|++|++++|+.|.+.+.+ ++++..|..++...++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45688999999999999999999886 77888888899999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 264 MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.|+|..+..++.+|+.++...||||||||||.++..++... ........+++++||..||++....+++||+|||+++.
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999987764321 11123567899999999999988889999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNE 419 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~ 419 (680)
||++++|||||++.|++++|+.++|.+||+.++++..+..+.+. ..++..+.||||+||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l--~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC--SCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH--HHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776655554 789999999999999999999999998764
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=284.12 Aligned_cols=242 Identities=35% Similarity=0.568 Sum_probs=198.3
Q ss_pred CcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMF 265 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~ 265 (680)
..++|+||+|++.+++.|.+.+.. +.+++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|+++...+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc
Confidence 567899999999999999998876 66677666665 4579999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC--CCCeEEEeccCCCCC
Q 005738 266 VGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT--TAGVVVLAGTNRPDI 343 (680)
Q Consensus 266 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~--~~~ViVIaaTN~~~~ 343 (680)
.|.....++.+|..+....|+||||||||.++..+.. +........++.|+..++++.. ..+++||++||+++.
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 9999999999999999999999999999999776532 2233456778889999887654 467999999999999
Q ss_pred CchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh-----
Q 005738 344 LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARN----- 418 (680)
Q Consensus 344 LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~----- 418 (680)
||++++| ||+..+.++.|+.++|.+|++.++......... ..+..++..+.|+++++|..||+.|+..+.++
T Consensus 265 l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~-~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~ 341 (389)
T 3vfd_A 265 LDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQ-KELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ 341 (389)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCH-HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred cCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 999999999999999999999999876554433 34688999999999999999999999998886
Q ss_pred -------cCCcccHHHHHHHHHHHh
Q 005738 419 -------ESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 419 -------~~~~It~~d~~~Al~~v~ 436 (680)
....|+.+||..++.++.
T Consensus 342 ~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 342 VKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp --CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhccchhhcCCcCHHHHHHHHHHcC
Confidence 345799999999998653
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.6e-28 Score=291.09 Aligned_cols=244 Identities=42% Similarity=0.705 Sum_probs=218.7
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
...++|+||+|++++++.|.+.+.. +.+|+.|..+++..+.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4578999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 265 FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+.|..+..++.+|+.+....|+++||||+|.+..+++. .........+++|+..+++...+.++++|++||+++.+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999876642 23445567889999999999888899999999999999
Q ss_pred chhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcC----
Q 005738 345 DKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNES---- 420 (680)
Q Consensus 345 D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~---- 420 (680)
|+++.|+|||++.+.++.|+.++|.+|++.++++..+..+.+. ..++..+.|++++|+..+|++|+..+.++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l--~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~ 431 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT--HHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh--HHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999988877655554 7899999999999999999999988876533
Q ss_pred -------------CcccHHHHHHHHHHH
Q 005738 421 -------------AQITMQHFEAAIDRV 435 (680)
Q Consensus 421 -------------~~It~~d~~~Al~~v 435 (680)
..++.+|+..++...
T Consensus 432 ~~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp CHHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred hhhhccchhhhhhhhhhhhhhhcccccc
Confidence 246677888777664
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.2e-30 Score=274.64 Aligned_cols=229 Identities=16% Similarity=0.196 Sum_probs=159.6
Q ss_pred hcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHH----HhcCCeEEEEcCcch
Q 005738 220 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEA----RQCAPSIVFIDEIDA 295 (680)
Q Consensus 220 ~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A----~~~~P~ILfIDEiD~ 295 (680)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++.+.++|..+..++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCCeEEEeccCCCCCCchhhcCCCccccccccCCCC
Q 005738 296 IGRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPD 364 (680)
Q Consensus 296 L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd 364 (680)
++++++.. .........+.+.|+..||+.. ...+++||+|||+++.||++++|||||++.+. .|+
T Consensus 111 ~~~~~~~~--~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~ 186 (293)
T 3t15_A 111 GAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCC
T ss_pred hcCCCCCC--ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcC
Confidence 98754321 1111123345677777776332 45679999999999999999999999999887 479
Q ss_pred HHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHH-------HHHHHHHHHhcCCcccHHHHHHHHHHHhc
Q 005738 365 IKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVC-------NEAALIAARNESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 365 ~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv-------~eAa~~a~r~~~~~It~~d~~~Al~~v~~ 437 (680)
.++|.+|++.++....+ + ...++..+.||++++|..+. .++.....+. +..+.+.. +++.
T Consensus 187 ~~~r~~Il~~~~~~~~~----~--~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~~---~~~~ 253 (293)
T 3t15_A 187 REDRIGVCTGIFRTDNV----P--AEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIGD---KLLN 253 (293)
T ss_dssp HHHHHHHHHHHHGGGCC----C--HHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCHH---HHTS
T ss_pred HHHHHHHHHHhccCCCC----C--HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHH---HHHc
Confidence 99999999988875432 2 36788999999999886431 1111111111 11111111 1222
Q ss_pred cccccchhhccccccchhhhhchhhhhcc
Q 005738 438 GLEKKNKVISKLERRTVAYHESGHAVAGW 466 (680)
Q Consensus 438 g~~~~~~~l~~~e~~~va~hEaGhavv~~ 466 (680)
+. .....+.+.+....++||+||+++..
T Consensus 254 ~~-~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 254 SF-DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp CS-SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 22 22334566677889999999999863
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.2e-26 Score=258.73 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=145.7
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFME 263 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~~~~ 263 (680)
.+...|++++|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999998877543 455679999999999999999999999999 9999999999999
Q ss_pred hhccCchhHHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHH---------------HHHHHHHHhhc-
Q 005738 264 MFVGVGPSRVRSLFQEA---RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERE---------------STLNQLLVEMD- 324 (680)
Q Consensus 264 ~~~g~~~~~vr~lf~~A---~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~---------------~~l~~LL~~md- 324 (680)
.++|..+. ++.+|..| +...||||||||+|+++.+|+....++...... +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 89999999 788899999999999998875432211111111 11233555554
Q ss_pred -CCCCCCCeEEEeccCCCCCCchhhcCCCcccc--ccccCCCC--HHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 325 -GFGTTAGVVVLAGTNRPDILDKALLRPGRFDR--QITIDKPD--IKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 325 -~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~--~I~v~~Pd--~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
+......++|+++||+++.+|++++||||||+ .+.++.|+ .++|.+|++.+... +++.++..+.|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---------dl~~~a~~t~g- 252 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---------DLDVANARPQG- 252 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---------HHHHTC------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---------HHHHHHHhCCC-
Confidence 33344456777999999999999999999999 66777774 47788888765532 35788999999
Q ss_pred CHHHHHHHHHH
Q 005738 400 AGADIANVCNE 410 (680)
Q Consensus 400 sgadL~~lv~e 410 (680)
|+||.++|+.
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 9999999975
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=7.5e-23 Score=214.97 Aligned_cols=226 Identities=20% Similarity=0.246 Sum_probs=171.9
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcChhhHhhhcCCCC---CeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeec
Q 005738 190 FFK-DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIP---KGALLVGPPGTGKTLLAKATAGES-------GVPFLSMSG 258 (680)
Q Consensus 190 ~f~-dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p---~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is~ 258 (680)
.++ +|+|++++|+.+.+++..+..+..+...|...+ .++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 344 799999999999999998766777777776544 469999999999999999999987 348999999
Q ss_pred hhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 259 SDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 259 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
+++.+.++|.....++.+|..+ .++||||||+|.+...++. +......++.|+..|+. ...+++||++|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~ 176 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMEN--NRDDLVVILAG 176 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHH--CTTTCEEEEEE
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc------ccccHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 9999999998888888888887 4689999999999754321 11224567777777775 34578888998
Q ss_pred CCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhh-------CCCCCHHHHHH
Q 005738 339 NRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAAL-------TPGFAGADIAN 406 (680)
Q Consensus 339 N~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~-------t~G~sgadL~~ 406 (680)
|.++ .++|+|++ ||+..+.|+.|+.+++.+|++.+++......+.+. +..++.. ...-+++++.+
T Consensus 177 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~gn~r~l~~ 253 (309)
T 3syl_A 177 YADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA-ETALRAYIGLRRNQPHFANARSIRN 253 (309)
T ss_dssp CHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH-HHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhccCCCCCcHHHHHH
Confidence 8653 35799999 99999999999999999999999987655444332 3445543 22235899999
Q ss_pred HHHHHHHHHHHh----cCCcccHHHHH
Q 005738 407 VCNEAALIAARN----ESAQITMQHFE 429 (680)
Q Consensus 407 lv~eAa~~a~r~----~~~~It~~d~~ 429 (680)
+++.|...+..+ ....++.+++.
T Consensus 254 ~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 254 ALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999988765543 33456666554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3.1e-22 Score=215.47 Aligned_cols=254 Identities=18% Similarity=0.271 Sum_probs=170.3
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechhhhhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSDFMEM 264 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~~~~~ 264 (680)
+..+|++++|++.+++.+..+...+... ...++++||+||||||||++|+++|+.++ .|++.+++..+.+.
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4556999999999999988888776543 23468999999999999999999999986 48988887664322
Q ss_pred hc-------------------------------------------------cCchhHHHHHHHHHHhc---------CCe
Q 005738 265 FV-------------------------------------------------GVGPSRVRSLFQEARQC---------APS 286 (680)
Q Consensus 265 ~~-------------------------------------------------g~~~~~vr~lf~~A~~~---------~P~ 286 (680)
+. |.....++..|..+... .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 11234566666555331 278
Q ss_pred EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc-----------CCCCCCchhhcCCCccc
Q 005738 287 IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT-----------NRPDILDKALLRPGRFD 355 (680)
Q Consensus 287 ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT-----------N~~~~LD~aLlRpgRfd 355 (680)
||||||+|.+.. ..++.|+..++.. ...++++++. |.+..++++|++ ||.
T Consensus 192 vl~IDEi~~l~~---------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 192 VLFIDEVHMLDI---------------ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp EEEEESGGGSBH---------------HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred eEEEhhccccCh---------------HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 999999998831 3455666666543 2335544443 357789999999 996
Q ss_pred cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 356 RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 356 ~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
. +.+++|+.+++.+|++.++.......+.+ .++.++..+.+.+++++.++|+.|+..|..+++..|+.+|+.++++.+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~-~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSED-AYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 6 89999999999999999988755544433 357788888756899999999999999999999999999999999864
Q ss_pred hccccccchhhccccccchhhhhchhhhhcccccc
Q 005738 436 IGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEH 470 (680)
Q Consensus 436 ~~g~~~~~~~l~~~e~~~va~hEaGhavv~~~l~~ 470 (680)
+.. ......+.+.+ +...++|.++--...-++|
T Consensus 331 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 363 (368)
T 3uk6_A 331 LDE-SRSTQYMKEYQ-DAFLFNELKGETMDTSLEH 363 (368)
T ss_dssp BCH-HHHHHHHC-----------------------
T ss_pred cCH-HHHHHHHHHhh-hhhhhhcCCccccccchhh
Confidence 432 12223343333 3345788877766555554
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.85 E-value=2.3e-20 Score=198.76 Aligned_cols=213 Identities=19% Similarity=0.231 Sum_probs=165.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccC
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGV 268 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~ 268 (680)
.+|++++|.+.+++.+...+...+. ....+.++||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------ 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------ 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------
Confidence 4799999999999999998876432 123567899999999999999999999999999999997652
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC----------------CCCCe
Q 005738 269 GPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG----------------TTAGV 332 (680)
Q Consensus 269 ~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~----------------~~~~V 332 (680)
....+...+.. ...+++|||||||.+. .. ..+.|+..++... ...++
T Consensus 93 ~~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~---~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 KSGDLAAILTN--LSEGDILFIDEIHRLS------------PA---IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp SHHHHHHHHHT--CCTTCEEEEETGGGCC------------HH---HHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred chhHHHHHHHh--ccCCCEEEEechhhcC------------HH---HHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 22334444432 2457899999999883 22 3344444444321 01248
Q ss_pred EEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 005738 333 VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAA 412 (680)
Q Consensus 333 iVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa 412 (680)
++|++||+...++++|++ ||+..+.+++|+.+++.++++.++.......+.+ .++.++..++| +.+++.++++.+.
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK-AALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999988765443333 34677876666 5689999999988
Q ss_pred HHHHHhcCCcccHHHHHHHHHHH
Q 005738 413 LIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 413 ~~a~r~~~~~It~~d~~~Al~~v 435 (680)
..+...+...|+.+++..++...
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHhhcCCccCHHHHHHHHHHh
Confidence 88887788889999999998763
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=7.9e-20 Score=191.18 Aligned_cols=237 Identities=22% Similarity=0.293 Sum_probs=162.1
Q ss_pred cccccchHHHHHHHHHHHH-hcChhhHhh-hcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-hhccC
Q 005738 192 KDVAGCDEAKQEIMEFVHF-LKNPKKYEE-LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-MFVGV 268 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~-l~~~~~~~~-~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-~~~g~ 268 (680)
++|+|++++++.+...+.. +..+..... .....|.++||+||||||||++|+++|+.++.+++.++++++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4599999999999887754 222111111 01245789999999999999999999999999999999998876 45554
Q ss_pred c-hhHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCCeEE
Q 005738 269 G-PSRVRSLFQEA-----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------TTAGVVV 334 (680)
Q Consensus 269 ~-~~~vr~lf~~A-----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~~~~ViV 334 (680)
. ...++.++..+ ....++||||||+|.+...... .+.+.....+.+.|+..+++.. ...++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 3 34566666532 1123689999999999665421 1223333445677777777531 2346788
Q ss_pred Eec----cCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHh-----------hcccC--CCCcchhHHHHHhhC-
Q 005738 335 LAG----TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYL-----------KKLKL--DNEPSFYSQRLAALT- 396 (680)
Q Consensus 335 Iaa----TN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l-----------~~~~l--~~~~d~~l~~la~~t- 396 (680)
|++ ++.+..++++|++ ||+..+.+++|+.+++.+|++..+ ..... ..+ +..++.|+..+
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~ 248 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFT-TDAVKKIAEAAF 248 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEEC-HHHHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccC-HHHHHHHHHHhh
Confidence 888 5677889999998 999889999999999999998421 11111 112 22245566654
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHhc-----CC-cccHHHHHHHHHH
Q 005738 397 ------PGFAGADIANVCNEAALIAARNE-----SA-QITMQHFEAAIDR 434 (680)
Q Consensus 397 ------~G~sgadL~~lv~eAa~~a~r~~-----~~-~It~~d~~~Al~~ 434 (680)
.+...+.+.++++.+...+..+. .. .|+.+|+..++..
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 24577899999998765433221 11 4999999888754
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=1.4e-19 Score=191.01 Aligned_cols=218 Identities=21% Similarity=0.265 Sum_probs=162.4
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
..+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 347999999999999999888754321 234678999999999999999999999999999999876521
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc-----CCC--------CCCCeEE
Q 005738 268 VGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD-----GFG--------TTAGVVV 334 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md-----~~~--------~~~~ViV 334 (680)
...+...|..+ ...+++|||||+|.+. ...+..+..++.... +.. ...++++
T Consensus 77 --~~~l~~~l~~~-~~~~~~l~lDEi~~l~------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 --PGDLAAILANS-LEEGDILFIDEIHRLS------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --HHHHHHHHTTT-CCTTCEEEETTTTSCC------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --hHHHHHHHHHh-ccCCCEEEEECCcccc------------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 22223333221 1457899999999883 223334444443321 000 1135889
Q ss_pred EeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 335 LAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 335 IaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
|++||.+..++++|.+ ||+..+.+++|+.+++.++++.++...+...+.+ .+..++..++| +++++.++++.+...
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 9999999999999998 9988999999999999999999988766554433 35778888876 568899999988777
Q ss_pred HHHhcCCcccHHHHHHHHHHH
Q 005738 415 AARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~~v 435 (680)
+...+...|+.+++..++...
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh
Confidence 666667789999998887653
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=1.5e-20 Score=213.66 Aligned_cols=225 Identities=22% Similarity=0.293 Sum_probs=149.3
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh---
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME--- 263 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~-~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~--- 263 (680)
..-.+|++|++++++.+.+.+..-. +... .+..++|+||||||||++|+++|+.++.++..++++.+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~-------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQK-------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHH-------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH-------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 4456889999999999987665311 1111 3467999999999999999999999999999999876543
Q ss_pred ------hhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC---------
Q 005738 264 ------MFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT--------- 328 (680)
Q Consensus 264 ------~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~--------- 328 (680)
.|+|.....+...|..+....| |+||||||.+...+. ....+.|+..||....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-----------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-----------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-----------cCHHHHHHHHHhhhhcceeecccCC
Confidence 4667777777888888766665 999999999965431 1245667777764321
Q ss_pred ----CCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc-----ccCCC-Cc---chhHHHHHh-
Q 005738 329 ----TAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK-----LKLDN-EP---SFYSQRLAA- 394 (680)
Q Consensus 329 ----~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~-----~~l~~-~~---d~~l~~la~- 394 (680)
..+++||+|||+++.+|++|++ ||+ .|.++.|+.+++.+|++.++.. ..+.. .. +..+..++.
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 1568999999999999999999 995 7999999999999999998732 22211 11 222344444
Q ss_pred hCCCCCHHHHHH----HHHHHHHHHHHh--cCCcccHHHHHHHHHH
Q 005738 395 LTPGFAGADIAN----VCNEAALIAARN--ESAQITMQHFEAAIDR 434 (680)
Q Consensus 395 ~t~G~sgadL~~----lv~eAa~~a~r~--~~~~It~~d~~~Al~~ 434 (680)
.+.....++|++ +|+.|+..+.+. ....|+.+++.+++..
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 333234455554 455544444433 3447999999998853
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=1.1e-20 Score=208.31 Aligned_cols=169 Identities=24% Similarity=0.274 Sum_probs=81.1
Q ss_pred cccccchHHHHHHHHHHHH-hcChhhHhhhcCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh-hhccC
Q 005738 192 KDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME-MFVGV 268 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~-l~~~~~~~~~g~~-~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~-~~~g~ 268 (680)
++|+|++++|+.|...+.. ++.+..+..+... .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 4444433333332 5789999999999999999999999999999999999988 49995
Q ss_pred -chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec-cCCCCCCch
Q 005738 269 -GPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG-TNRPDILDK 346 (680)
Q Consensus 269 -~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa-TN~~~~LD~ 346 (680)
.+..++.+|..+... +++||+|.+.... .+....+++++||.+||++.....+ +++ ||+++.||+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 788999999999874 4589988774321 2233467999999999998766554 455 999999999
Q ss_pred hhcCCCccccccccCCCCHH-HHHHHHH
Q 005738 347 ALLRPGRFDRQITIDKPDIK-GRDQIFQ 373 (680)
Q Consensus 347 aLlRpgRfd~~I~v~~Pd~~-eR~~Il~ 373 (680)
+|+||||||+.|++++|+.. .|.+|+.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999987 7778764
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=5.5e-19 Score=182.80 Aligned_cols=222 Identities=18% Similarity=0.273 Sum_probs=148.4
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCch
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGP 270 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~ 270 (680)
.+.++|++++.+.+.+....+. ..+...+...++++||+||||||||++|+++|.+++.+|+.+++++. +.|...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCch
Confidence 4578899888777766322221 11223345677899999999999999999999999999999988763 334332
Q ss_pred ----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-CCCCeEEEeccCCCCCCc
Q 005738 271 ----SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-TTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 271 ----~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-~~~~ViVIaaTN~~~~LD 345 (680)
..++.+|..+....+++|||||+|.+...+..+ .......++.|...+++.. ....++||++||.++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 467888998888889999999999997654321 1112345555666666654 344688999999999998
Q ss_pred h-hhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC----CHHHHHHHHHHHHHHHHHhcC
Q 005738 346 K-ALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF----AGADIANVCNEAALIAARNES 420 (680)
Q Consensus 346 ~-aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~----sgadL~~lv~eAa~~a~r~~~ 420 (680)
+ .+.+ ||+..+.+|.++. |.+|.+...+...+ .+..+..++..+.|+ ..+++.++++.|.. ..
T Consensus 182 ~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~~ 249 (272)
T 1d2n_A 182 EMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----MD 249 (272)
T ss_dssp HTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----SC
T ss_pred hhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----hc
Confidence 8 5555 9988888765543 44444444333222 223357788888886 45666666665432 22
Q ss_pred CcccHHHHHHHHHH
Q 005738 421 AQITMQHFEAAIDR 434 (680)
Q Consensus 421 ~~It~~d~~~Al~~ 434 (680)
.....+++..+++.
T Consensus 250 ~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 250 PEYRVRKFLALLRE 263 (272)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34455566655543
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=3.7e-18 Score=183.45 Aligned_cols=225 Identities=17% Similarity=0.178 Sum_probs=162.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeech
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGS 259 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s 259 (680)
..+++++|.++..+.+.+.+.... ....+.+++|+||||||||++|+++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 345899999999988887664321 12346789999999999999999999988 8889999986
Q ss_pred hhhhh----------------hccCchhH-HHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHH
Q 005738 260 DFMEM----------------FVGVGPSR-VRSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLV 321 (680)
Q Consensus 260 ~~~~~----------------~~g~~~~~-vr~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~ 321 (680)
...+. ..|..... ...++...... .|++|||||+|.+...+ ..+..+..++.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~ 157 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITR 157 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhh
Confidence 53211 11222223 33444444333 47899999999995431 13467888887
Q ss_pred hhcCCCCCCCeEEEeccCCC---CCCchhhcCCCcccc-ccccCCCCHHHHHHHHHHHhhcc--cCCCCcchhHHHHHhh
Q 005738 322 EMDGFGTTAGVVVLAGTNRP---DILDKALLRPGRFDR-QITIDKPDIKGRDQIFQIYLKKL--KLDNEPSFYSQRLAAL 395 (680)
Q Consensus 322 ~md~~~~~~~ViVIaaTN~~---~~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~~--~l~~~~d~~l~~la~~ 395 (680)
.++......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++... ....+.+ .++.++..
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 77654325678899999987 778999998 8875 89999999999999999988641 1122222 24556666
Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 396 TP---GFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 396 t~---G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
+. | .++.+.++|+.|+..|..++...|+.+|+..+++.+
T Consensus 235 ~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 235 AAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 65 5 567888999999988888788899999999999875
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=1.8e-18 Score=191.89 Aligned_cols=221 Identities=15% Similarity=0.210 Sum_probs=153.2
Q ss_pred Ccccccccc-cchH--HHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeec
Q 005738 187 DKVFFKDVA-GCDE--AKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSG 258 (680)
Q Consensus 187 ~~~~f~dv~-G~~~--~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~ 258 (680)
+..+|++++ |.+. +...+..+ ...+ .. +.+++|+||||||||+||+++++++ +.+++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~---a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEV---AKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHH---HHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHH---HhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 456899987 5433 33333322 2222 12 6789999999999999999999988 889999999
Q ss_pred hhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 259 SDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 259 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
.++...+.+.........|.......|+||||||+|.+..+ ...+..+..++..+ ......+||++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------~~~q~~l~~~l~~l---~~~~~~iIitt~ 235 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------TGVQTELFHTFNEL---HDSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------HHHHHHHHHHHHHH---HTTTCEEEEEES
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------hHHHHHHHHHHHHH---HHCCCeEEEEEC
Confidence 98866544322221122344443336899999999998431 12223333333332 223445666665
Q ss_pred CCCCC---CchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005738 339 NRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 339 N~~~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~ 413 (680)
+.+.. +++.|++ ||. ..+.+++|+.++|.+|++..+...++..+.+. +..|+..+.| +.+++.++++.+..
T Consensus 236 ~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_dssp SCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 55554 7899999 886 78999999999999999999876555444333 5778888876 78999999999888
Q ss_pred HHHHhcCCcccHHHHHHHHHHHh
Q 005738 414 IAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 414 ~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
.|...+ ..|+.+++.+++....
T Consensus 312 ~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 312 YKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHSS-SCCCHHHHHHHTSTTT
T ss_pred HHHHhC-CCCCHHHHHHHHHHHh
Confidence 876655 4799999999986543
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=1.3e-18 Score=187.67 Aligned_cols=223 Identities=22% Similarity=0.269 Sum_probs=146.3
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHh---hhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh-hccC
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYE---ELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM-FVGV 268 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~---~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~-~~g~ 268 (680)
.|+|++++++.+...+.......... ......+.++||+||||||||++|+++|+.++.||+.++|+++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998875311111000 0011256899999999999999999999999999999999998754 7776
Q ss_pred c-hhHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC----------------
Q 005738 269 G-PSRVRSLFQEA----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---------------- 327 (680)
Q Consensus 269 ~-~~~vr~lf~~A----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------------- 327 (680)
. ...++.+|..+ ....++||||||||.+...+...+ .+.+...+.+.+.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 45667777765 344579999999999987654322 1223333457888888888431
Q ss_pred ---CCCCeEEEeccCCC----------CC-----------------------------------CchhhcCCCccccccc
Q 005738 328 ---TTAGVVVLAGTNRP----------DI-----------------------------------LDKALLRPGRFDRQIT 359 (680)
Q Consensus 328 ---~~~~ViVIaaTN~~----------~~-----------------------------------LD~aLlRpgRfd~~I~ 359 (680)
...++++|+++|.. .. ++|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 12233444444421 11 6788887 9999999
Q ss_pred cCCCCHHHHHHHHHH----Hhhcc-------cCCCCc-chhHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHh
Q 005738 360 IDKPDIKGRDQIFQI----YLKKL-------KLDNEP-SFYSQRLAA--LTPGFAGADIANVCNEAALIAARN 418 (680)
Q Consensus 360 v~~Pd~~eR~~Il~~----~l~~~-------~l~~~~-d~~l~~la~--~t~G~sgadL~~lv~eAa~~a~r~ 418 (680)
+++|+.+++.+|++. ++++. ...... +..++.|+. ....+..++|.++++++...+..+
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 999999999999986 22211 111111 122344553 334455677888888776655443
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=3.1e-17 Score=161.43 Aligned_cols=201 Identities=21% Similarity=0.199 Sum_probs=144.9
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~~ 262 (680)
..+|++++|.+++++.+.+.+.. . .+.+++|+||||||||++|+++++++ ..+++.+++++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~---~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER---K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT---T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 45799999999999988887653 1 12359999999999999999999875 4568888876532
Q ss_pred hhhccCchhHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 263 EMFVGVGPSRVRSLFQEAR------QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~------~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
+...++..+.... ...+++|+|||+|.+.. .. .+.|+..++. ...++.+|+
T Consensus 81 ------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~---~~~l~~~l~~--~~~~~~~i~ 137 (226)
T 2chg_A 81 ------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DA---QAALRRTMEM--YSKSCRFIL 137 (226)
T ss_dssp ------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HH---HHHHHHHHHH--TTTTEEEEE
T ss_pred ------ChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HH---HHHHHHHHHh--cCCCCeEEE
Confidence 1223333333332 24578999999998832 22 3334444443 245678888
Q ss_pred ccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 337 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 337 aTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
+||.++.+++++.+ ||. .+.+++|+.+++.++++.++...+...+.+ .+..++..+.| ..+.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 99999999999999 886 899999999999999999887655543333 34667777766 5566667766655432
Q ss_pred HhcCCcccHHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAID 433 (680)
Q Consensus 417 r~~~~~It~~d~~~Al~ 433 (680)
..|+.+|+++++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 6899999999874
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=1e-17 Score=177.71 Aligned_cols=217 Identities=18% Similarity=0.248 Sum_probs=143.9
Q ss_pred Ccccccccc-c--chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 005738 187 DKVFFKDVA-G--CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD 260 (680)
Q Consensus 187 ~~~~f~dv~-G--~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~ 260 (680)
+..+|++++ | ...+...+..++. .+ ...+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 456899987 4 3344444444333 22 1246789999999999999999999988 89999999998
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
+...+.+.........|..... .+++|||||+|.+... ...++.+..++..+. .....+|+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~----------~~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK----------ERTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC----------HHHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC----------hHHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 8765543322222223333332 4789999999998431 122333333333321 2344677777777
Q ss_pred CC---CCchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH-
Q 005738 341 PD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI- 414 (680)
Q Consensus 341 ~~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~- 414 (680)
+. .++++|.+ ||+ ..+.+++ +.+++.+|++.++...+...+.+ .++.++..+ | ..+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 66 68999998 886 6788999 99999999999998766555443 357788888 4 678888888876654
Q ss_pred --HHH-hcCCcc-cHHHHHHHHH
Q 005738 415 --AAR-NESAQI-TMQHFEAAID 433 (680)
Q Consensus 415 --a~r-~~~~~I-t~~d~~~Al~ 433 (680)
+.+ .+...| +.+++.+++.
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHH
Confidence 000 122345 5555555554
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=5.6e-18 Score=179.40 Aligned_cols=202 Identities=18% Similarity=0.182 Sum_probs=137.5
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhcc
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVG 267 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g 267 (680)
..+|++++|++++++.|.+.+. ....|..+|++||||||||++|+++|++++.+++.+++++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~------ 84 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC------ 84 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC------
T ss_pred CCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc------
Confidence 4579999999999999988776 23456788999999999999999999999999999998773
Q ss_pred CchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 268 VGPSRVRSLFQEARQC-----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 268 ~~~~~vr~lf~~A~~~-----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+...++..+...... .++||||||+|.+.. .. ..+.|+..++. ...++.+|++||.+.
T Consensus 85 -~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~---~~~~L~~~le~--~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 85 -KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AE---SQRHLRSFMEA--YSSNCSIIITANNID 147 (324)
T ss_dssp -CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HH---HHHHHHHHHHH--HGGGCEEEEEESSGG
T ss_pred -CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HH---HHHHHHHHHHh--CCCCcEEEEEeCCcc
Confidence 234555555554333 568999999999841 12 23344444443 235678888999999
Q ss_pred CCchhhcCCCccccccccCCCCHHHHHHHHHHHhh-------cccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 343 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLK-------KLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 343 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~-------~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.+++++++ || ..+.++.|+.++|.+|++.++. ..+...+....++.++..+.|-. +++.+.+..++
T Consensus 148 ~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~L~~~~--- 220 (324)
T 3u61_B 148 GIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGELDSYS--- 220 (324)
T ss_dssp GSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHHHHHHG---
T ss_pred ccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHHHHHHh---
Confidence 99999999 99 4799999999998777655432 22333322133577888876633 34444444433
Q ss_pred HHhcCCcccHHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAID 433 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al~ 433 (680)
....|+.+++..++.
T Consensus 221 ---~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 ---SKGVLDAGILSLVTN 235 (324)
T ss_dssp ---GGTCBCC--------
T ss_pred ---ccCCCCHHHHHHHhC
Confidence 334688888887754
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.74 E-value=4.3e-18 Score=189.02 Aligned_cols=205 Identities=19% Similarity=0.236 Sum_probs=148.8
Q ss_pred cccccccccchHHH---HHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh
Q 005738 188 KVFFKDVAGCDEAK---QEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM 264 (680)
Q Consensus 188 ~~~f~dv~G~~~~k---~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~ 264 (680)
..+|++++|++.++ ..|...+.. . ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~---~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA---G---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH---T---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc---C---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 35799999999998 556555543 1 1268999999999999999999999999999998754
Q ss_pred hccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc--
Q 005738 265 FVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT-- 338 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT-- 338 (680)
.+...++.+|..+.. ..++||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT----TSCEEEEEESS
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---------------HHHHHHHHHhc----CceEEEecCCC
Confidence 244567777777653 35799999999998321 22345555553 346666666
Q ss_pred CCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc-------CCCCcchhHHHHHhhCCCCCHHHHHHHHHHH
Q 005738 339 NRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK-------LDNEPSFYSQRLAALTPGFAGADIANVCNEA 411 (680)
Q Consensus 339 N~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~-------l~~~~d~~l~~la~~t~G~sgadL~~lv~eA 411 (680)
|....++++|++ |+. .+.++.|+.+++..+++.++.... ...+ +..++.|+..++| ..+++.++++.+
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~-~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP-DETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC-HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC-HHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 445689999999 885 788999999999999999987622 1122 2235677887666 667888888888
Q ss_pred HHHHHHh--cCCcccHHHHHHHHHHH
Q 005738 412 ALIAARN--ESAQITMQHFEAAIDRV 435 (680)
Q Consensus 412 a~~a~r~--~~~~It~~d~~~Al~~v 435 (680)
+..+... +...|+.+++.+++.+.
T Consensus 219 ~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 219 ADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHhcccccCCCCccCHHHHHHHHhhh
Confidence 7665322 44689999999988643
No 47
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=5.5e-17 Score=174.86 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=155.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----------CCCeEEee
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----------GVPFLSMS 257 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----------~~~~i~is 257 (680)
...++++|.++.++.+.+.+..... ...|++++|+||||||||++|+++++++ +.++++++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3458999999999999988765322 2346789999999999999999999987 89999999
Q ss_pred chhhh-h----------hh-------ccCchhH-HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHH-HH
Q 005738 258 GSDFM-E----------MF-------VGVGPSR-VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDEREST-LN 317 (680)
Q Consensus 258 ~s~~~-~----------~~-------~g~~~~~-vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~-l~ 317 (680)
|.+.. . .+ .+..... +..++..+... +++|+|||+|.+..... ... +.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-----------~~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-----------GDIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-----------SHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-----------CceeHH
Confidence 87643 1 11 1222222 34444444333 34999999999964321 124 55
Q ss_pred HHHHhhcCCCCCCCeEEEeccCCC---CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhc-c-cCCCCcchhHHHH
Q 005738 318 QLLVEMDGFGTTAGVVVLAGTNRP---DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKK-L-KLDNEPSFYSQRL 392 (680)
Q Consensus 318 ~LL~~md~~~~~~~ViVIaaTN~~---~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~-~-~l~~~~d~~l~~l 392 (680)
.|+... .++.+|++||.+ +.+++++.+ ||...+.+++|+.+++.+|++.++.. . ....+ +..++.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i 227 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYI 227 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHH
Confidence 555443 678899999987 678999988 88889999999999999999998863 1 11222 2224566
Q ss_pred HhhCC---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 005738 393 AALTP---GFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 393 a~~t~---G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
+..+. | ..+.+.++|+.|...|. +...|+.+|+..++++..
T Consensus 228 ~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 228 AAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 66665 4 45667788888877765 567899999999998763
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=6e-17 Score=172.52 Aligned_cols=223 Identities=17% Similarity=0.208 Sum_probs=138.7
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC-------CCe-----
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG-------VPF----- 253 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~-------~~~----- 253 (680)
.+..+|++++|++.+++.+.... + .+ .+.++||+||||||||++|+++++.++ .+|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999876543221 1 11 135699999999999999999999876 232
Q ss_pred ---------------------EEeechhhhhhhccCchhHHHHHHHHH---------HhcCCeEEEEcCcchhhhhcCCC
Q 005738 254 ---------------------LSMSGSDFMEMFVGVGPSRVRSLFQEA---------RQCAPSIVFIDEIDAIGRARGRG 303 (680)
Q Consensus 254 ---------------------i~is~s~~~~~~~g~~~~~vr~lf~~A---------~~~~P~ILfIDEiD~L~~~r~~~ 303 (680)
+.+..+.-.....|.. .+...+... ....+++|||||+|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 1111110001111110 011122221 111368999999998832
Q ss_pred CCCCCChHHHHHHHHHHHh----hcCC----CCCCCeEEEeccCCCC-CCchhhcCCCccccccccCCC-CHHHHHHHHH
Q 005738 304 GFSGGNDERESTLNQLLVE----MDGF----GTTAGVVVLAGTNRPD-ILDKALLRPGRFDRQITIDKP-DIKGRDQIFQ 373 (680)
Q Consensus 304 ~~~~~~~~~~~~l~~LL~~----md~~----~~~~~ViVIaaTN~~~-~LD~aLlRpgRfd~~I~v~~P-d~~eR~~Il~ 373 (680)
.....+..++.. +... ....++++|++||..+ .++++|++ ||+.++.++.| +.+++.+|++
T Consensus 159 -------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 159 -------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp -------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred -------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 222333333332 1000 0123689999999754 89999999 99988999998 6777778887
Q ss_pred HHhhc-----------------------------ccCCCCcchhHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHhcCC
Q 005738 374 IYLKK-----------------------------LKLDNEPSFYSQRLAALTP---GFAGADIANVCNEAALIAARNESA 421 (680)
Q Consensus 374 ~~l~~-----------------------------~~l~~~~d~~l~~la~~t~---G~sgadL~~lv~eAa~~a~r~~~~ 421 (680)
.++.. .....+. ..++.|+.... .-+.+.+.++++.|...|..+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~ 308 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARALAALEGAT 308 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 63210 0111111 11234444332 226799999999998888888888
Q ss_pred cccHHHHHHHHHHHhc
Q 005738 422 QITMQHFEAAIDRVIG 437 (680)
Q Consensus 422 ~It~~d~~~Al~~v~~ 437 (680)
.|+.+|+.+|+..++.
T Consensus 309 ~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 309 AVGRDHLKRVATMALS 324 (350)
T ss_dssp BCCHHHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999987754
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=1.4e-17 Score=176.91 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=147.7
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh--hhhcc
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM--EMFVG 267 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~--~~~~g 267 (680)
.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.... +.+.|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467899999999887765432 25899999999999999999999999999998874211 11111
Q ss_pred CchhH-HHHHHHHHHhcC---CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC---------CCCCCeEE
Q 005738 268 VGPSR-VRSLFQEARQCA---PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF---------GTTAGVVV 334 (680)
Q Consensus 268 ~~~~~-vr~lf~~A~~~~---P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~---------~~~~~ViV 334 (680)
...-. ....|. .... .+||||||+|.+.. . +.+.|+..|+.. .....++|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~------------~---~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA------------K---VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH------------H---HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCH------------H---HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 10000 000000 0111 37999999998722 2 334444444421 12346788
Q ss_pred EeccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccC----------------------CCCcch
Q 005738 335 LAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKL----------------------DNEPSF 387 (680)
Q Consensus 335 IaaTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l----------------------~~~~d~ 387 (680)
|+|+|..+ .++++|++ ||+.++.++.|+.+++.+|++.++..... ..+ +.
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~-~~ 230 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS-ES 230 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC-HH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC-HH
Confidence 88888554 38999999 99888999999999999999988764211 111 11
Q ss_pred hHHHHHhh-------------------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc
Q 005738 388 YSQRLAAL-------------------TPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 388 ~l~~la~~-------------------t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g 438 (680)
.++.++.. ..|.|.+.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 12233221 1256899999999999888888899999999999999887643
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.73 E-value=3e-17 Score=164.47 Aligned_cols=207 Identities=12% Similarity=0.098 Sum_probs=141.9
Q ss_pred Ccccccccccc---hHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh
Q 005738 187 DKVFFKDVAGC---DEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD 260 (680)
Q Consensus 187 ~~~~f~dv~G~---~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~ 260 (680)
+..+|++++|. +.+.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34689999973 344444444332 1 135789999999999999999999877 47889999988
Q ss_pred hhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCe-EEEeccC
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV-VVLAGTN 339 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~V-iVIaaTN 339 (680)
+...+.. . +.. ...+++|+|||+|.+... ......+..++.... ....+ +|+++++
T Consensus 91 ~~~~~~~----~----~~~--~~~~~vliiDe~~~~~~~----------~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTA----L----LEG--LEQFDLICIDDVDAVAGH----------PLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGG----G----GTT--GGGSSEEEEETGGGGTTC----------HHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHH----H----HHh--ccCCCEEEEeccccccCC----------HHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 7654311 1 111 134789999999998321 112333444433321 22333 5555544
Q ss_pred CCC---CCchhhcCCCccc--cccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005738 340 RPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALI 414 (680)
Q Consensus 340 ~~~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~ 414 (680)
.++ .+++++.+ ||. ..+.+++|+.+++.++++.+++..+...+.+ .++.++..+.| +.+++.++++.+...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPED-VGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHH-HHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 444 45688888 886 8899999999999999999988665544433 35778888876 788999999988877
Q ss_pred HHHhcCCcccHHHHHHHHH
Q 005738 415 AARNESAQITMQHFEAAID 433 (680)
Q Consensus 415 a~r~~~~~It~~d~~~Al~ 433 (680)
|...+ ..|+.+++.+++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 75444 5699999998863
No 51
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.3e-17 Score=186.53 Aligned_cols=222 Identities=19% Similarity=0.277 Sum_probs=145.0
Q ss_pred cccccccccchHHHHHHHHHHHHhc--ChhhHhhhcC---CCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLK--NPKKYEELGA---KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~--~~~~~~~~g~---~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
..+|+|++|.+++++.|.+++.... .+..++..|. ..++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4589999999999999998876522 1122222333 3568999999999999999999999999999999998764
Q ss_pred hhhccCc-------hhHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 005738 263 EMFVGVG-------PSRVRSLFQEA-----RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTA 330 (680)
Q Consensus 263 ~~~~g~~-------~~~vr~lf~~A-----~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~ 330 (680)
....... ...++.+|..+ ....++||||||+|.+.... .. .++.|+..++. ...
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------~~---~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------RG---GVGQLAQFCRK--TST 180 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------TT---HHHHHHHHHHH--CSS
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------HH---HHHHHHHHHHh--cCC
Confidence 4321100 01123334333 23567999999999994321 11 23344444432 233
Q ss_pred CeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHH
Q 005738 331 GVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNE 410 (680)
Q Consensus 331 ~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~e 410 (680)
.+++++++.....+++ +.| +...+.|+.|+.+++.++++..+...+...+.+. +..|+..+.| |++.+++.
T Consensus 181 ~iIli~~~~~~~~l~~-l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G----diR~~i~~ 251 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG----DIRQVINL 251 (516)
T ss_dssp CEEEEESCTTSSTTGG-GTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT----CHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----cHHHHHHH
Confidence 4566655544445544 443 4468999999999999999988876555444443 5788888765 45555554
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHH
Q 005738 411 AALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 411 Aa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
....+. .+..|+.+++..++..
T Consensus 252 L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 252 LSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HTHHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHh--cCCCCchHHHHHHHHh
Confidence 333332 4567899888887764
No 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=1.1e-16 Score=159.18 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=145.8
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe-------------
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------------- 253 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~------------- 253 (680)
...+|++++|.+.+++.|.+.+.. ...|..++|+||||||||++++++++.++...
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 344689999999999999887753 12356899999999999999999998774321
Q ss_pred -----------EEeechhhhhhhccCchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHH
Q 005738 254 -----------LSMSGSDFMEMFVGVGPSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQ 318 (680)
Q Consensus 254 -----------i~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~ 318 (680)
+.++... ......++.++..+. ...|.+|+|||+|.+.. ..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~~ 145 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNA 145 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHHH
Confidence 1111110 011233455555432 23478999999998721 24455
Q ss_pred HHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 319 LLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 319 LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
|+..++. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...+...+.+ .++.++..+.|
T Consensus 146 l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G 219 (250)
T 1njg_A 146 LLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEG 219 (250)
T ss_dssp HHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHTT
T ss_pred HHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCC
Confidence 6666654 34578888999999999999988 76 6899999999999999999987655443333 35778888877
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 399 FAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 399 ~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+++.+.++++.|... +...|+.+|+++++
T Consensus 220 -~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 -SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp -CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred -CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 788899999877533 34589999998875
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.72 E-value=2.8e-16 Score=167.91 Aligned_cols=216 Identities=18% Similarity=0.264 Sum_probs=157.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccC
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGV 268 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~ 268 (680)
.+|++++|.+.+++.+...+..-+. ....+..++|+|||||||||||+++|+++++++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 3789999999888888776654211 1234678999999999999999999999999988777654321
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc-------CCC------CCCCeEEE
Q 005738 269 GPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD-------GFG------TTAGVVVL 335 (680)
Q Consensus 269 ~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md-------~~~------~~~~ViVI 335 (680)
...+..++.. ...++|+||||+|.+.+ ..+..+...+.... +.. ....+.++
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 2233333322 23468999999998832 12223332222110 000 01246778
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
++|+++..|++.+++ ||...+.+++|+.+++.+|++...+..+...+.+ .+..|+.++.| +++++.++++.+...|
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~-~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDA-AAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 899999999999999 9988899999999999999999887665554433 35788888887 5688999999988888
Q ss_pred HHhcCCcccHHHHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al~~v 435 (680)
...++..|+.+++.++++..
T Consensus 231 ~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHh
Confidence 77778889999999999875
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.9e-16 Score=168.38 Aligned_cols=225 Identities=16% Similarity=0.206 Sum_probs=158.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc------CCCeEEeechhhh
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES------GVPFLSMSGSDFM 262 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~------~~~~i~is~s~~~ 262 (680)
..+++++|.++..+.|.+.+.... ....+..++|+||||||||++++++++.+ +.++++++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 456899999999888877654321 12346789999999999999999999988 8899999986432
Q ss_pred h------hh----------ccCchhH-HHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 263 E------MF----------VGVGPSR-VRSLFQEARQCA-PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 263 ~------~~----------~g~~~~~-vr~lf~~A~~~~-P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
. .. .+..... ...++....... |++|+|||+|.+....+ ...+..++..++
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRINS 157 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhchh
Confidence 1 11 1111222 344444444433 89999999999965321 125667776666
Q ss_pred CCCCCCCeEEEeccCCC---CCCchhhcCCCccc-cccccCCCCHHHHHHHHHHHhhcccCCCC-cchhHHHHHhhCC--
Q 005738 325 GFGTTAGVVVLAGTNRP---DILDKALLRPGRFD-RQITIDKPDIKGRDQIFQIYLKKLKLDNE-PSFYSQRLAALTP-- 397 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~---~~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~-~d~~l~~la~~t~-- 397 (680)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++........ .+..+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 54 34578888888877 467888887 775 58999999999999999988764221111 1222455666555
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 005738 398 -GFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 398 -G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
| .++.+.++|+.|+..+...+...|+.+|+..|+..+.
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 5567778999998888877888999999999998764
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=7.5e-17 Score=190.29 Aligned_cols=222 Identities=23% Similarity=0.310 Sum_probs=160.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
-+|++++|.++.++.+.+.+. . ..+.++||+||||||||++|+++|..+ +.+++.++.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 378999999988888766543 1 245789999999999999999999976 566888887
Q ss_pred hhhh--hhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 259 SDFM--EMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 259 s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
+.+. ..+.|..+.+++.+|..+....++||||||+|.+.+.++. ..+ .....+.|...+ ....+.+|+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~~~---~~~~~~~L~~~l----~~~~~~~I~ 320 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGG---QVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS---SSC---HHHHHHHHSSCS----SSCCCEEEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC---Ccc---hHHHHHHHHHHH----hCCCeEEEE
Confidence 7776 3567778889999999998888999999999999765321 111 122223232222 356788999
Q ss_pred ccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcc----cCCCCcchhHHHHHhhC-----CCCCHH
Q 005738 337 GTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL----KLDNEPSFYSQRLAALT-----PGFAGA 402 (680)
Q Consensus 337 aTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~~~d~~l~~la~~t-----~G~sga 402 (680)
+||.++ .+|++|.| ||+ .+.++.|+.+++.+|++.+.... ..... +..+..++..+ ..+.+.
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCch
Confidence 998653 57899999 997 69999999999999999877542 22222 22234444443 345667
Q ss_pred HHHHHHHHHHHHHHH----hcCCcccHHHHHHHHHHHh
Q 005738 403 DIANVCNEAALIAAR----NESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 403 dL~~lv~eAa~~a~r----~~~~~It~~d~~~Al~~v~ 436 (680)
.+..++++|+..+.. ..+..|+.+|+..++.+..
T Consensus 397 ~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 888999988766554 2356799999999998864
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=1.2e-16 Score=173.22 Aligned_cols=237 Identities=22% Similarity=0.224 Sum_probs=142.0
Q ss_pred cccccchHHHHHHHHHHHH-hcChhhH-----------------hhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe
Q 005738 192 KDVAGCDEAKQEIMEFVHF-LKNPKKY-----------------EELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF 253 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~-l~~~~~~-----------------~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~ 253 (680)
++|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999987732 1111100 011234567899999999999999999999999999
Q ss_pred EEeechhhh-hhhccCc-hhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 005738 254 LSMSGSDFM-EMFVGVG-PSRVRSLFQEAR----QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG 327 (680)
Q Consensus 254 i~is~s~~~-~~~~g~~-~~~vr~lf~~A~----~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~ 327 (680)
+.++++.+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.... ...+...+...+.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~~~Ll~~le~~~ 179 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS-ITRDVSGEGVQQALLKIVEGSL 179 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc-eecccchHHHHHHHHHHhhccc
Confidence 999998875 3455553 344555555432 33678999999999976643211 1111122236677777777531
Q ss_pred -------------------CCCCeEEEeccCCC-----------------------------------------CCCchh
Q 005738 328 -------------------TTAGVVVLAGTNRP-----------------------------------------DILDKA 347 (680)
Q Consensus 328 -------------------~~~~ViVIaaTN~~-----------------------------------------~~LD~a 347 (680)
...++++|+++|.. ..+.|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~ 259 (376)
T 1um8_A 180 VNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPE 259 (376)
T ss_dssp EC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHH
T ss_pred eecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChH
Confidence 12556778877621 124566
Q ss_pred hcCCCccccccccCCCCHHHHHHHHHH----Hhh----c-----ccCCCCcchhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 005738 348 LLRPGRFDRQITIDKPDIKGRDQIFQI----YLK----K-----LKLDNEPSFYSQRLAALTP--GFAGADIANVCNEAA 412 (680)
Q Consensus 348 LlRpgRfd~~I~v~~Pd~~eR~~Il~~----~l~----~-----~~l~~~~d~~l~~la~~t~--G~sgadL~~lv~eAa 412 (680)
|++ ||+..+.+++++.++..+|+.. +++ . ..+..+ +..+..|+.... ....+.|.++++.+.
T Consensus 260 l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~R~L~~~le~~~ 336 (376)
T 1um8_A 260 LIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE-EEAIKEIAQLALERKTGARGLRAIIEDFC 336 (376)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC-HHHHHHHHHHHHHTTCTGGGHHHHHHHHH
T ss_pred Hhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC-HHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 666 8888899999999999998862 211 1 111111 122355655532 345688999988887
Q ss_pred HHHHHhcC------CcccHHHHHHHH
Q 005738 413 LIAARNES------AQITMQHFEAAI 432 (680)
Q Consensus 413 ~~a~r~~~------~~It~~d~~~Al 432 (680)
..+..+.. ..|+.+++..+.
T Consensus 337 ~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 337 LDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 76555321 247777765543
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=2.2e-17 Score=158.69 Aligned_cols=158 Identities=22% Similarity=0.370 Sum_probs=115.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 468999999988777766542 1 236789999999999999999999986 788999998
Q ss_pred hhhhh--hhccCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 259 SDFME--MFVGVGPSRVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 259 s~~~~--~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
.++.. .+.+.....++.++..+.. ..|+||+|||+|.+...+.. .........+..++. ..++.+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----~~~~~~~~~l~~~~~-------~~~~~~i 155 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA----DGAMDAGNMLKPALA-------RGELHCV 155 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHHH-------TTSCCEE
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc----cchHHHHHHHHHhhc-------cCCeEEE
Confidence 87762 3344445567777776643 55889999999999654321 111122334444432 3467888
Q ss_pred eccCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHH
Q 005738 336 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIF 372 (680)
Q Consensus 336 aaTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il 372 (680)
++||.++ .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888776 68999999 997 6999999999998875
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=4e-16 Score=166.14 Aligned_cols=207 Identities=18% Similarity=0.169 Sum_probs=144.2
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC------CCeEEeechh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG------VPFLSMSGSD 260 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~------~~~i~is~s~ 260 (680)
...+|++++|.+++++.|...+.. . +. .++||+||||||||++|+++++.++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~---~--------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS---A--------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC---T--------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc---C--------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 345799999999999888766431 1 12 3499999999999999999999864 4678888766
Q ss_pred hhhhhccCchhHHHHHHHHHHh----------------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 261 FMEMFVGVGPSRVRSLFQEARQ----------------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 261 ~~~~~~g~~~~~vr~lf~~A~~----------------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
.. +...++..+..... ..+.||||||+|.+.. . ..+.|+..|+
T Consensus 100 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------~---~~~~Ll~~le 158 (353)
T 1sxj_D 100 ER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------D---AQSALRRTME 158 (353)
T ss_dssp CC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------H---HHHHHHHHHH
T ss_pred cc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------H---HHHHHHHHHH
Confidence 31 11222222222111 2356999999998832 1 2344555555
Q ss_pred CCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHH
Q 005738 325 GFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADI 404 (680)
Q Consensus 325 ~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL 404 (680)
.. ...+.+|.+||.++.+++++++ |+. .+.+++|+.++...+++..+...+...+.+ .+..++..+.| ..+.+
T Consensus 159 ~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 159 TY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-DLRRG 231 (353)
T ss_dssp HT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-CHHHH
T ss_pred hc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 43 3346667788999999999999 885 789999999999999999887655444433 35778888876 45667
Q ss_pred HHHHHHHHHHHHHhcCC-cccHHHHHHHHH
Q 005738 405 ANVCNEAALIAARNESA-QITMQHFEAAID 433 (680)
Q Consensus 405 ~~lv~eAa~~a~r~~~~-~It~~d~~~Al~ 433 (680)
.++++.++..+.+.+.. .|+.+|+.+++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 232 ITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 77777766665444333 799999887654
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.68 E-value=2.3e-16 Score=165.40 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=135.4
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--- 264 (680)
.++++|++.+++.+...+......-. -..+++.++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 34688999999999888775321000 001223479999999999999999999987 667999999876432
Q ss_pred --hccCch-----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------C
Q 005738 265 --FVGVGP-----SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---------T 328 (680)
Q Consensus 265 --~~g~~~-----~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------~ 328 (680)
++|... .....+.........++|||||+|.+. .. ..+.|+..|+... .
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~~---~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------PD---VFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------HH---HHHHHHHHHHHSEEECTTSCEEE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------HH---HHHHHHHHHhcCEEEcCCCCEEE
Confidence 222111 000122223334445899999999882 22 3444555444321 0
Q ss_pred CCCeEEEeccCC--------------------------CCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc--
Q 005738 329 TAGVVVLAGTNR--------------------------PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK-- 380 (680)
Q Consensus 329 ~~~ViVIaaTN~--------------------------~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~-- 380 (680)
-.++++|+|||. ...++++|++ ||+..+.+++|+.+++.+|++.+++...
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 136789999998 4568889988 9999999999999999999999876531
Q ss_pred -------CCCCcchhHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 005738 381 -------LDNEPSFYSQRLAALTP--GFAGADIANVCNEAALIA 415 (680)
Q Consensus 381 -------l~~~~d~~l~~la~~t~--G~sgadL~~lv~eAa~~a 415 (680)
...+ +..++.|+.... ..+.++|.++++++...+
T Consensus 236 ~~~~~~~~~~~-~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 236 LAEKRISLELT-EAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp HHTTTCEEEEC-HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred HHhCCcEEEeC-HHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 1111 222455666544 456788999888876544
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=2.1e-16 Score=176.61 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=141.4
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEee
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMS 257 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is 257 (680)
.-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 34689999999999888776542 234689999999999999999999986 78899999
Q ss_pred chhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 258 GSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 258 ~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
++ ..|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|++
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~--------------~~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEEE
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc--------------hhHHHHHHHhhc----CCCEEEEec
Confidence 87 66778888889999999998889999999 10 012234444443 457899999
Q ss_pred cCCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc----CCCCcchhHHHHHhhCC-----CCCHHH
Q 005738 338 TNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK----LDNEPSFYSQRLAALTP-----GFAGAD 403 (680)
Q Consensus 338 TN~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~----l~~~~d~~l~~la~~t~-----G~sgad 403 (680)
||.++ .+|++|+| ||. .+.|+.|+.+++.+|++.++.... ...+ +..+..++..+. .+.+..
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~-~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSIT-DDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCC-HHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhccCcCCcH
Confidence 99887 68999999 997 599999999999999998876632 2222 222344544433 344567
Q ss_pred HHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHH
Q 005738 404 IANVCNEAALIAARNE-SAQITMQHFEAAIDRV 435 (680)
Q Consensus 404 L~~lv~eAa~~a~r~~-~~~It~~d~~~Al~~v 435 (680)
...++.+|+..+..+. .......+++..++++
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 7888888876554443 3344556666665554
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.1e-16 Score=167.42 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=117.6
Q ss_pred cccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeechhhhh
Q 005738 194 VAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSGSDFME 263 (680)
Q Consensus 194 v~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~s~~~~ 263 (680)
+.|.++..+.+..++... +....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 566666666666555441 223467899999999999999999999988 35688899865432
Q ss_pred ----------hhcc------CchhHHHHHHHHH--HhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcC
Q 005738 264 ----------MFVG------VGPSRVRSLFQEA--RQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDG 325 (680)
Q Consensus 264 ----------~~~g------~~~~~vr~lf~~A--~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~ 325 (680)
.+.| .....++..|... ....++||+|||+|.|. .+..++.|+.+...
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------------~q~~L~~l~~~~~~ 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------------SEKILQYFEKWISS 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------------CTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------------cchHHHHHHhcccc
Confidence 2222 2445677888775 34568999999999994 12467777765432
Q ss_pred CCCCCCeEEEeccCCCCC----CchhhcCCCccc-cccccCCCCHHHHHHHHHHHhhcc
Q 005738 326 FGTTAGVVVLAGTNRPDI----LDKALLRPGRFD-RQITIDKPDIKGRDQIFQIYLKKL 379 (680)
Q Consensus 326 ~~~~~~ViVIaaTN~~~~----LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~~ 379 (680)
...+++||+++|..+. |++++.+ ||. +.|.|++++.++..+|++..++..
T Consensus 160 --~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 --KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp --SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred --cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 4567999999998765 4555666 886 689999999999999999998764
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=2.3e-15 Score=162.04 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=156.9
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCC--eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhh
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPK--GALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFM 262 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~--gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~ 262 (680)
..+++++|.++..+.+.+.+..... ...+. .++|+||||||||++++++++.+ +.++++++|+...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3458899999999999888765211 12234 89999999999999999999988 6788999976532
Q ss_pred h------h---hc-------cCchhHHHH-HHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc
Q 005738 263 E------M---FV-------GVGPSRVRS-LFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD 324 (680)
Q Consensus 263 ~------~---~~-------g~~~~~vr~-lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md 324 (680)
. . .+ +.....+.. +...... ..|.||+|||+|.+. ...++.|+..++
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLGQ 150 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHHH
Confidence 1 1 01 112222222 2222222 458899999999881 135566666655
Q ss_pred CCCC--CCCeEEEeccCCC---CCCchhhcCCCcccc-ccccCCCCHHHHHHHHHHHhhcccCCCC-cchhHHHHHhhC-
Q 005738 325 GFGT--TAGVVVLAGTNRP---DILDKALLRPGRFDR-QITIDKPDIKGRDQIFQIYLKKLKLDNE-PSFYSQRLAALT- 396 (680)
Q Consensus 325 ~~~~--~~~ViVIaaTN~~---~~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~~~l~~~-~d~~l~~la~~t- 396 (680)
.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+........ .+..+..++..+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 4322 2578888999987 678888887 8864 7999999999999999988864211111 122356677777
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 005738 397 --------PGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 397 --------~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
.| ..+.+.++|+.|...|..++...|+.+++..++..+.
T Consensus 229 ~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 44 5678899999999888888888999999999988754
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=5.9e-16 Score=162.16 Aligned_cols=201 Identities=21% Similarity=0.208 Sum_probs=141.9
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDF 261 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~ 261 (680)
...+|++++|++.+++.|.+.+.. ...|. +||+||||||||++|+++++.+ +.+++.+++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-----------KNIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-----------TCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-----------CCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 345799999999999888765432 12333 9999999999999999999986 346788888764
Q ss_pred hhhhccCchhHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 262 MEMFVGVGPSRVRSLFQEAR------QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~------~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
.. ...++..+.... ...+.||+|||+|.+.. ...+.|+..++. ...++++|
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~~~~~~i 136 (319)
T 2chq_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEM--YSKSCRFI 136 (319)
T ss_dssp TC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSS--SSSSEEEE
T ss_pred cC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHh--cCCCCeEE
Confidence 22 112222232222 13478999999999832 234566666665 34568888
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
++||.+..+++++.+ |+. .+.+++|+.+++.++++.+++..+...+.+ .+..++..+.| +.+.+.++++.++.
T Consensus 137 ~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~~~~l~~~~~-- 209 (319)
T 2chq_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAA-- 209 (319)
T ss_dssp EEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHH-HHHHHHHTTTT-CHHHHHHHHHHHHH--
T ss_pred EEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH--
Confidence 899999999999999 885 899999999999999999988766554433 24677776665 44555555554432
Q ss_pred HHhcCCcccHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAI 432 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al 432 (680)
....|+.+++..++
T Consensus 210 ---~~~~i~~~~v~~~~ 223 (319)
T 2chq_A 210 ---IGEVVDADTIYQIT 223 (319)
T ss_dssp ---SSSCBCHHHHHHHT
T ss_pred ---cCCCCCHHHHHHHH
Confidence 23468888887664
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.66 E-value=3.1e-15 Score=160.50 Aligned_cols=202 Identities=21% Similarity=0.310 Sum_probs=147.2
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 252 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~--------------- 252 (680)
..+|++++|.+++++.|.+.+.. .+.++.+||+||||||||++|+++++.++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 34799999999999999887753 2346789999999999999999999987542
Q ss_pred ---------eEEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 253 ---------FLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 253 ---------~i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
++.++.+. ..+...++.++..+.. ..+.||+|||+|.+.. ...+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L 139 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNAL 139 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHHHH
Confidence 11221111 1123356777776643 2368999999998821 245566
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGF 399 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~ 399 (680)
+..++. ...++++|++||.+..+++++.+ |+ ..+.+++|+.++..++++.+++..+...+.+ .+..++..+.|
T Consensus 140 l~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~-a~~~l~~~~~G- 212 (373)
T 1jr3_A 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEG- 212 (373)
T ss_dssp HHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHSSS-
T ss_pred HHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHCCC-
Confidence 666665 34578888888888899999988 77 6899999999999999999987765544433 24678888876
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 400 AGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 400 sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
+.+++.++++.+... ....|+.+++.+++
T Consensus 213 ~~r~~~~~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 213 SLRDALSLTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp CHHHHHHHHHHHHHH----TTTCBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 677888888876533 24569999887765
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=4.7e-15 Score=155.55 Aligned_cols=201 Identities=16% Similarity=0.159 Sum_probs=143.2
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~~ 262 (680)
..+|++++|.+.+++.|.+.+.. .+.|. +||+||||+|||++|+++++.+ +.+++.+++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 34799999999999998887642 23345 9999999999999999999986 3457777776521
Q ss_pred hhhccCchhHHHHHHHHHH-------hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 263 EMFVGVGPSRVRSLFQEAR-------QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~-------~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
+...++.++.... ...+++|+|||+|.+.. ...+.|+..++. ...++++|
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~--~~~~~~~i 141 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMEL--YSNSTRFA 141 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHH--TTTTEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhc--cCCCceEE
Confidence 2345566666554 22378999999999832 123444544544 34567788
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
.+||.++.+++++.+ |+. .+.+++|+.+++.++++.+++..+...+.+ .+..++..+.| +.+.+.++++.++..
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~~~~- 215 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQSTVAG- 215 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHH-
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc-
Confidence 888999999999998 774 899999999999999999887655443333 34677887766 445555555544421
Q ss_pred HHhcCCcccHHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAID 433 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al~ 433 (680)
...|+.+++.+++.
T Consensus 216 ----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 ----HGLVNADNVFKIVD 229 (323)
T ss_dssp ----HSSBCHHHHHHHHT
T ss_pred ----CCCcCHHHHHHHHC
Confidence 24688888877763
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=8.7e-16 Score=183.51 Aligned_cols=205 Identities=22% Similarity=0.302 Sum_probs=135.1
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEee
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMS 257 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is 257 (680)
.-+|++++|.++..+.+.+++.. ..+.+++|+||||||||++|+++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 34799999999877777665531 235689999999999999999999987 88999999
Q ss_pred chhhh--hhhccCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEE
Q 005738 258 GSDFM--EMFVGVGPSRVRSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVV 334 (680)
Q Consensus 258 ~s~~~--~~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViV 334 (680)
++.+. ..+.|..+.+++.+|..+... .|+||||||+|.+.+.+... +.......+..++ + ...+.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~~~~~~~L~~~l---~----~~~i~~ 302 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GAVDAGNMLKPAL---A----RGELRL 302 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHH---H----TTCCCE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----chHHHHHHHHHHH---h----CCCeEE
Confidence 98886 457788888999999999875 68999999999997554211 1122223344443 2 356788
Q ss_pred EeccCCCC----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCc---chhHHHHHhh-----CCCCCHH
Q 005738 335 LAGTNRPD----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEP---SFYSQRLAAL-----TPGFAGA 402 (680)
Q Consensus 335 IaaTN~~~----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~---d~~l~~la~~-----t~G~sga 402 (680)
|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++......... +..+..++.. +..+.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99998765 47999999 9975 9999999999999999877644211111 1223344443 4567778
Q ss_pred HHHHHHHHHHHHHHHh
Q 005738 403 DIANVCNEAALIAARN 418 (680)
Q Consensus 403 dL~~lv~eAa~~a~r~ 418 (680)
....++.+|+..+...
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888887665543
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.1e-15 Score=180.28 Aligned_cols=197 Identities=21% Similarity=0.295 Sum_probs=134.5
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCC-eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhc
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPK-GALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFV 266 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~-gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~ 266 (680)
.++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 36799999999999988876432110 011233 69999999999999999999987 78999999999987765
Q ss_pred cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------CCCCeEEEec
Q 005738 267 GVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG---------TTAGVVVLAG 337 (680)
Q Consensus 267 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~---------~~~~ViVIaa 337 (680)
..+ ..++...+...++||||||||.+ +. .+++.|+..|+... ...++++|+|
T Consensus 566 ~~~----~~l~~~~~~~~~~vl~lDEi~~~------------~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 TSG----GQLTEKVRRKPYSVVLLDAIEKA------------HP---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS------------CH---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ccc----chhhHHHHhCCCeEEEEeCcccc------------CH---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 541 22334445556789999999887 22 34455555555321 2346799999
Q ss_pred cCCCCC------------CchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc-------CCCCc-chhHHHHHh--h
Q 005738 338 TNRPDI------------LDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK-------LDNEP-SFYSQRLAA--L 395 (680)
Q Consensus 338 TN~~~~------------LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~-------l~~~~-d~~l~~la~--~ 395 (680)
||.+.. ++|+|++ ||+..|.|++|+.+++.+|++.++.... ..... +..++.|+. .
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 996543 7888888 9999999999999999999998876531 11111 122345554 3
Q ss_pred CCCCCHHHHHHHHHHHH
Q 005738 396 TPGFAGADIANVCNEAA 412 (680)
Q Consensus 396 t~G~sgadL~~lv~eAa 412 (680)
...+..++|.++++++.
T Consensus 705 ~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHV 721 (758)
T ss_dssp CTTTTTTTHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHH
Confidence 34455677777777654
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=2.4e-15 Score=177.46 Aligned_cols=189 Identities=22% Similarity=0.295 Sum_probs=134.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 4689999999999988776542 235689999999999999999999986 788888887
Q ss_pred hhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 259 SDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 259 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
...|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|++|
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------~~~~~~L~~~l~----~~~v~~I~at 298 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIGAT 298 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEEEC
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------hhHHHHHHHHHh----cCCEEEEeCC
Confidence 455778888899999999999999999999 10 012344444443 5678999999
Q ss_pred CCCC-----CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCc---chhHHHHHhh-----CCCCCHHHHH
Q 005738 339 NRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEP---SFYSQRLAAL-----TPGFAGADIA 405 (680)
Q Consensus 339 N~~~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~---d~~l~~la~~-----t~G~sgadL~ 405 (680)
|..+ .+|++++| || ..|.|+.|+.+++.+||+.+.........+ +..+..++.. +.++.+.+..
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9888 79999999 99 569999999999999999887663221111 2222333332 4567778888
Q ss_pred HHHHHHHHHHHHh
Q 005738 406 NVCNEAALIAARN 418 (680)
Q Consensus 406 ~lv~eAa~~a~r~ 418 (680)
.++.+|+..+..+
T Consensus 376 ~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 376 DLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888887655443
No 69
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=3.9e-16 Score=175.16 Aligned_cols=211 Identities=15% Similarity=0.110 Sum_probs=132.1
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeech-----hhhhh
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGS-----DFMEM 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s-----~~~~~ 264 (680)
..++|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++. ++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4588999988777554432 35899999999999999999999884 456655553 22221
Q ss_pred hccCchhHHHHHHHHHHhc---CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC-------C-CCCCeE
Q 005738 265 FVGVGPSRVRSLFQEARQC---APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF-------G-TTAGVV 333 (680)
Q Consensus 265 ~~g~~~~~vr~lf~~A~~~---~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~-------~-~~~~Vi 333 (680)
+.+..... ...|..+... .++|||||||+.+. . .+.+.|+..|+.. . .....+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~------------~---~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG------------P---AILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC------------H---HHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc------------H---HHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 11111111 1223222211 46899999997652 1 3455666666431 1 112235
Q ss_pred EEeccCCCCC---CchhhcCCCccccccccCCCCH-HHHHHHHHHHhhcccC---------------------CCCc-ch
Q 005738 334 VLAGTNRPDI---LDKALLRPGRFDRQITIDKPDI-KGRDQIFQIYLKKLKL---------------------DNEP-SF 387 (680)
Q Consensus 334 VIaaTN~~~~---LD~aLlRpgRfd~~I~v~~Pd~-~eR~~Il~~~l~~~~l---------------------~~~~-d~ 387 (680)
+|+|||.+.. +.+++++ ||...+.+++|+. +++.+|++.+...... .... +.
T Consensus 152 iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred hhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 6777785322 3458999 9999999999987 7788998876531100 0001 11
Q ss_pred hHHHHHhh---------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 388 YSQRLAAL---------TPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 388 ~l~~la~~---------t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
..+.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..+
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 12223222 3588999999999999999999999999999998 54443
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=1.2e-14 Score=152.72 Aligned_cols=201 Identities=20% Similarity=0.224 Sum_probs=139.3
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCeEEeechhh
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSMSGSDF 261 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~-----~~~i~is~s~~ 261 (680)
...+|++++|++++++.|...+.. .+. .++||+||||||||++|+++++.+. .+++.+++++.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 345799999999999999887653 122 3499999999999999999999863 34777877654
Q ss_pred hhhhccCchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 262 MEMFVGVGPSRVRSLFQEARQ------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 262 ~~~~~g~~~~~vr~lf~~A~~------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
... ..++..+..... ..+++|+|||+|.+.. ...+.|+..++. ...++.+|
T Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~~~~~~i 144 (327)
T 1iqp_A 88 RGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEM--FSSNVRFI 144 (327)
T ss_dssp HHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHH--TTTTEEEE
T ss_pred Cch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHh--cCCCCeEE
Confidence 321 122222222211 3478999999998832 234455555554 34567888
Q ss_pred eccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005738 336 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIA 415 (680)
Q Consensus 336 aaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a 415 (680)
++||.++.+++++.+ |+. .+.+++|+.++..++++.++...+...+.+ .++.++..+.| +.+.+.++++.++.
T Consensus 145 ~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~~-- 217 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA-- 217 (327)
T ss_dssp EEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHHT--
T ss_pred EEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHh--
Confidence 889999999999998 885 789999999999999999887655443333 34677777766 55556666654432
Q ss_pred HHhcCCcccHHHHHHHH
Q 005738 416 ARNESAQITMQHFEAAI 432 (680)
Q Consensus 416 ~r~~~~~It~~d~~~Al 432 (680)
....|+.+++..++
T Consensus 218 ---~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 218 ---LDKKITDENVFMVA 231 (327)
T ss_dssp ---TCSEECHHHHHHHT
T ss_pred ---cCCCCCHHHHHHHH
Confidence 23468888776654
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=1.8e-15 Score=178.41 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=135.3
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCC----CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhh---
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAK----IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~----~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~--- 264 (680)
++|+|++++++.+...+.... .|.. +..++||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 468999999999888776432 1222 22369999999999999999999999999999999988653
Q ss_pred --hccCch-----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC---------
Q 005738 265 --FVGVGP-----SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT--------- 328 (680)
Q Consensus 265 --~~g~~~-----~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~--------- 328 (680)
.+|... ..-..+....+...++||||||||.+. . .+++.|+..||...-
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~------------~---~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------P---DVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC------------H---HHHHHHHHHHHHSEEEETTTEEEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC------------H---HHHHHHHHHhcCcEEEcCCCCEEe
Confidence 222211 111223444455567999999999872 2 355566665653210
Q ss_pred CCCeEEEeccCCCC-------------------------CCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc---
Q 005738 329 TAGVVVLAGTNRPD-------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK--- 380 (680)
Q Consensus 329 ~~~ViVIaaTN~~~-------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~--- 380 (680)
-.+++||+|||.+. .++|+|++ |||..|.|++|+.+++..|++.++.+..
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 14688999999754 57888988 9999999999999999999999886431
Q ss_pred ------CCCCcchhHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 005738 381 ------LDNEPSFYSQRLAAL--TPGFAGADIANVCNEAAL 413 (680)
Q Consensus 381 ------l~~~~d~~l~~la~~--t~G~sgadL~~lv~eAa~ 413 (680)
+..+ +..++.|+.. ...+..++|.++++.+..
T Consensus 674 ~~~~~~~~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 674 DQKGVSLEVS-QEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHTTEEEEEC-HHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHCCcEEEeC-HHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 1111 1123445543 234556777777776554
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.61 E-value=5.1e-15 Score=152.26 Aligned_cols=209 Identities=19% Similarity=0.230 Sum_probs=121.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhhhhh-
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESG---VPFLSMSGSDFMEM- 264 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~---~~~i~is~s~~~~~- 264 (680)
.+|++++|.+.+.+.+.+.+..+. ..+.++||+||||||||++|++++..+. .||+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 479999999999999988776542 2357899999999999999999999874 78999999876432
Q ss_pred ----hccCchhH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc----C--CC
Q 005738 265 ----FVGVGPSR-------VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD----G--FG 327 (680)
Q Consensus 265 ----~~g~~~~~-------vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md----~--~~ 327 (680)
..|..... ....|..+ ..++|||||||.+. ...+..+.+++..-. + ..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC------------HHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC------------HHHHHHHHHHHHhCCeecCCCccc
Confidence 22221100 01123322 35799999999883 223334444443210 0 01
Q ss_pred CCCCeEEEeccCCC-------CCCchhhcCCCccccccccCCCCHHHH----HHHHHHHhhc----ccCCC--Cc-chhH
Q 005738 328 TTAGVVVLAGTNRP-------DILDKALLRPGRFDRQITIDKPDIKGR----DQIFQIYLKK----LKLDN--EP-SFYS 389 (680)
Q Consensus 328 ~~~~ViVIaaTN~~-------~~LD~aLlRpgRfd~~I~v~~Pd~~eR----~~Il~~~l~~----~~l~~--~~-d~~l 389 (680)
...++.+|++||.+ ..++++|.+ ||.. +.+..|+..+| ..+++.+++. .+... .. +..+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 13457899999974 246778887 8853 45556666554 3344444432 22211 12 2223
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 005738 390 QRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHF 428 (680)
Q Consensus 390 ~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~ 428 (680)
..|....-..+.++|.++++.++..+ ....|+.+|+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 44544442335578888888876554 3446666654
No 73
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=8.8e-16 Score=147.34 Aligned_cols=151 Identities=25% Similarity=0.414 Sum_probs=108.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSMSG 258 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----------~~~~i~is~ 258 (680)
.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 368999999987777765542 2 235789999999999999999999987 788888888
Q ss_pred hhhhhh--hccCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEE
Q 005738 259 SDFMEM--FVGVGPSRVRSLFQEARQC-APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVL 335 (680)
Q Consensus 259 s~~~~~--~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVI 335 (680)
..+... +.+.....++.++..+... .|++|||||+|.+...+... .........+..++ + ..++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~~l~~~~---~----~~~~~ii 156 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA---EGALDAGNILKPML---A----RGELRCI 156 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC---TTSCCTHHHHHHHH---H----TTCSCEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc---ccchHHHHHHHHHH---h----cCCeeEE
Confidence 776532 3344455677777777665 68899999999996443211 11122223333333 2 3567899
Q ss_pred eccCCCC-----CCchhhcCCCccccccccCCCC
Q 005738 336 AGTNRPD-----ILDKALLRPGRFDRQITIDKPD 364 (680)
Q Consensus 336 aaTN~~~-----~LD~aLlRpgRfd~~I~v~~Pd 364 (680)
++||.++ .+|+++++ ||+. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9999765 68999999 9984 8999886
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.56 E-value=7.2e-15 Score=155.06 Aligned_cols=204 Identities=20% Similarity=0.293 Sum_probs=126.5
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh----
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM---- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~---- 264 (680)
++++|.+.+.+.+.+.+..+. ..+.++||+||||||||++|++++..+ +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 368999999999988887643 235789999999999999999999965 689999999876432
Q ss_pred -hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC---------
Q 005738 265 -FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------- 327 (680)
Q Consensus 265 -~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------- 327 (680)
.+|... ......|..+. .++|||||||.+.. ..+. .|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~------------~~q~---~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP------------LMQV---RLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH------------HHHH---HHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH------------HHHH---HHHHHHhcCEeeecCCccc
Confidence 222210 01223455553 47999999998832 2333 3444444321
Q ss_pred CCCCeEEEeccCCC-------CCCchhhcCCCccccccccCCCCHHHHH----HHHHHHhhcc----cCC-CCc-chhHH
Q 005738 328 TTAGVVVLAGTNRP-------DILDKALLRPGRFDRQITIDKPDIKGRD----QIFQIYLKKL----KLD-NEP-SFYSQ 390 (680)
Q Consensus 328 ~~~~ViVIaaTN~~-------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~----~Il~~~l~~~----~l~-~~~-d~~l~ 390 (680)
...++.||++||.+ ..+++.|.. ||. .+.+..|+..+|. .+++++++.. +.. ... +..+.
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~ 210 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMD 210 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHH
Confidence 13458899999975 134455555 653 5556666666553 3555555432 111 111 22245
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q 005738 391 RLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFE 429 (680)
Q Consensus 391 ~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~ 429 (680)
.+....-.-+.++|.+++..++..+ ....|+.+|+.
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 5666552225578888888776543 34567766653
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=6.7e-14 Score=149.42 Aligned_cols=205 Identities=23% Similarity=0.260 Sum_probs=134.7
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----CeEEeechhhh
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV-----PFLSMSGSDFM 262 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~-----~~i~is~s~~~ 262 (680)
..+|++++|++.+++.|...+.. .+.|. ++|+||||||||++|+++|+.+.. .+..+++++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~- 87 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD- 87 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-
Confidence 45799999999999988877652 23455 999999999999999999998633 3566665542
Q ss_pred hhhccCchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEe
Q 005738 263 EMFVGVGPSRVRSLFQEARQ------CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLA 336 (680)
Q Consensus 263 ~~~~g~~~~~vr~lf~~A~~------~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIa 336 (680)
.+...++..+..... ..+.|++|||+|.+.. ...+.|+..++.. ...+.+|.
T Consensus 88 -----~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~--~~~~~~il 145 (340)
T 1sxj_C 88 -----RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERY--TKNTRFCV 145 (340)
T ss_dssp -----CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred -----ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcC--CCCeEEEE
Confidence 123344544443331 2368999999998832 1234555555543 34567777
Q ss_pred ccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005738 337 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAA 416 (680)
Q Consensus 337 aTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~ 416 (680)
+||.+..+.+++++ |+. .+.+..++.++..+++...++..++..+.+ ....++..+.| ..+.+.++++.++..+.
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTTTTTTC
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 88999999999999 885 788999999999999988886544433322 24567766655 33334344433322221
Q ss_pred HhcCCcccHHHHHHHH
Q 005738 417 RNESAQITMQHFEAAI 432 (680)
Q Consensus 417 r~~~~~It~~d~~~Al 432 (680)
+.+...|+.+++..++
T Consensus 221 ~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 221 NPDEDEISDDVIYECC 236 (340)
T ss_dssp SSSCCCBCHHHHHHHT
T ss_pred CcccccccHHHHHHHh
Confidence 1122368888876654
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=9e-14 Score=148.42 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=125.6
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC----------------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 251 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~---------------- 251 (680)
..+|++++|++++++.|...+. + ..+.|. ++|+||||||||++++++++++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 4579999999999888776541 1 123456 999999999999999999996421
Q ss_pred -------------CeEEeechhhhhhhccCc-hhHHHHHHHHHH--------------hcCCeEEEEcCcchhhhhcCCC
Q 005738 252 -------------PFLSMSGSDFMEMFVGVG-PSRVRSLFQEAR--------------QCAPSIVFIDEIDAIGRARGRG 303 (680)
Q Consensus 252 -------------~~i~is~s~~~~~~~g~~-~~~vr~lf~~A~--------------~~~P~ILfIDEiD~L~~~r~~~ 303 (680)
+++.++.++. +.. ...+++.+..+. ...|.||+|||+|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------ 147 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------ 147 (354)
T ss_dssp -------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC------
T ss_pred ccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC------
Confidence 1222222211 111 113555555442 2257799999998862
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCC
Q 005738 304 GFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDN 383 (680)
Q Consensus 304 ~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~ 383 (680)
.. ..+.|+..++.. ..++.+|.+||.++.+.+++++ |+ ..+.+++|+.+++.++++..++..+...
T Consensus 148 ------~~---~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ------KD---AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ------HH---HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ------HH---HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 22 234444445443 3457888889999999999998 88 7899999999999999999887665543
Q ss_pred C-cchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005738 384 E-PSFYSQRLAALTPGFAGADIANVCNEAAL 413 (680)
Q Consensus 384 ~-~d~~l~~la~~t~G~sgadL~~lv~eAa~ 413 (680)
+ .+ .+..++..+.| +.+++.++++.++.
T Consensus 214 ~~~~-~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 214 ETKD-ILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CCSH-HHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CcHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 3 22 35678877766 45566666665443
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=1.6e-15 Score=174.01 Aligned_cols=221 Identities=20% Similarity=0.170 Sum_probs=136.9
Q ss_pred cccccchHHHHHHHHHHHHhcC-hhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe----echhhhhh--
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKN-PKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSM----SGSDFMEM-- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~-~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i----s~s~~~~~-- 264 (680)
..|+|++++|+.+.-.+ ... ++.......+...++||+||||||||++|+++|+.++.+++.. +++++...
T Consensus 295 ~~I~G~e~vk~al~~~l--~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALAL--FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTT--TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHH--hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 35778888776653211 111 0001111223334899999999999999999999987665442 22222211
Q ss_pred ---hccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCC
Q 005738 265 ---FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-----------TTA 330 (680)
Q Consensus 265 ---~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-----------~~~ 330 (680)
+.|.... ....+..| ..+|+||||||.+. .. ..+.|+..|+.-. .+.
T Consensus 373 ~~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~------------~~---~q~~Ll~~le~~~i~i~~~g~~~~~~~ 433 (595)
T 3f9v_A 373 REKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMR------------DE---DRVAIHEAMEQQTVSIAKAGIVAKLNA 433 (595)
T ss_dssp SGGGTSSCSE-EECHHHHH---SSSEECCTTTTCCC------------SH---HHHHHHHHHHSSSEEEESSSSEEEECC
T ss_pred eccccccccc-cCCeeEec---CCCcEEeehhhhCC------------Hh---HhhhhHHHHhCCEEEEecCCcEEEecC
Confidence 1111100 01123333 34899999999872 22 3344555554321 134
Q ss_pred CeEEEeccCCCC-------------CCchhhcCCCcccc-ccccCCCCHHHHHHHHHHHhhcccC-------CC------
Q 005738 331 GVVVLAGTNRPD-------------ILDKALLRPGRFDR-QITIDKPDIKGRDQIFQIYLKKLKL-------DN------ 383 (680)
Q Consensus 331 ~ViVIaaTN~~~-------------~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~~~l-------~~------ 383 (680)
++.||+|||++. .|+++|++ |||. .+..+.|+.+ ...|.++.+..... +.
T Consensus 434 ~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~ 510 (595)
T 3f9v_A 434 RAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKY 510 (595)
T ss_dssp CCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHH
T ss_pred ceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHH
Confidence 688999999886 89999999 9985 4456677777 77777776653210 00
Q ss_pred ----------Cc-chhHHHHHhh--------------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 005738 384 ----------EP-SFYSQRLAAL--------------TPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVI 436 (680)
Q Consensus 384 ----------~~-d~~l~~la~~--------------t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~ 436 (680)
.. +...+.|... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-+.
T Consensus 511 i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 511 IAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 00 0111223332 35788999999999999999889999999999999997543
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=5.5e-14 Score=168.00 Aligned_cols=202 Identities=23% Similarity=0.269 Sum_probs=134.3
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--- 264 (680)
+++|+|++++++.+...+...+..-.. ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999998888763211000 01122479999999999999999999988 789999999887543
Q ss_pred --hc-------cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------
Q 005738 265 --FV-------GVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG-------- 327 (680)
Q Consensus 265 --~~-------g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~-------- 327 (680)
.+ |... ...+....+...+++|||||||.+. . .+++.|+..|+.-.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~------------~---~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH------------P---DVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC------------H---HHHHHHHHHHTTTEECCSSSCC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC------------H---HHHHHHHHHhccCceECCCCCE
Confidence 12 2211 1233344445556899999998872 2 35566666666321
Q ss_pred -CCCCeEEEeccCCC--------------------------CCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhccc
Q 005738 328 -TTAGVVVLAGTNRP--------------------------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLK 380 (680)
Q Consensus 328 -~~~~ViVIaaTN~~--------------------------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~ 380 (680)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++....
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01367899999972 235677777 9999999999999999999998876321
Q ss_pred ---------CCCCcchhHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 005738 381 ---------LDNEPSFYSQRLAALTP--GFAGADIANVCNEAALIA 415 (680)
Q Consensus 381 ---------l~~~~d~~l~~la~~t~--G~sgadL~~lv~eAa~~a 415 (680)
+..+ +..++.|+.... .+..++|.++++.+...+
T Consensus 775 ~~~~~~~~~~~~~-~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 775 ARLAEKRISLELT-EAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHHTTTCEEEEC-HHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHHHhCCceEEEC-HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1111 122355555433 456678888888765543
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.46 E-value=7.7e-13 Score=143.57 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=149.9
Q ss_pred cccccccchHHHHHHHHHH-HHhcChhhHhhhcCCCCCeEEE--EcCCCChHHHHHHHHHHhc---------CCCeEEee
Q 005738 190 FFKDVAGCDEAKQEIMEFV-HFLKNPKKYEELGAKIPKGALL--VGPPGTGKTLLAKATAGES---------GVPFLSMS 257 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v-~~l~~~~~~~~~g~~~p~gvLL--~GppGtGKT~LAralA~e~---------~~~~i~is 257 (680)
..++++|.++..+.|.+.+ ...... ....+..++| +||||+|||++++++++.+ +.++++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 4478999999999998887 543211 0023567999 9999999999999999876 56778888
Q ss_pred chh------hhhhh---cc-------CchhH-HHHHHHHHH-hcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 258 GSD------FMEMF---VG-------VGPSR-VRSLFQEAR-QCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 258 ~s~------~~~~~---~g-------~~~~~-vr~lf~~A~-~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
|.. +.... +| ..... ...+..... ...|.+|+|||+|.+...+. .+ ...+..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~------~~---~~~l~~l 164 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR------IA---AEDLYTL 164 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT------SC---HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC------cc---hHHHHHH
Confidence 743 11111 11 11122 222222222 24588999999999953210 01 2345555
Q ss_pred HHhhcCCCC-C--CCeEEEeccCCCC---CCc---hhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCC-cchhH
Q 005738 320 LVEMDGFGT-T--AGVVVLAGTNRPD---ILD---KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNE-PSFYS 389 (680)
Q Consensus 320 L~~md~~~~-~--~~ViVIaaTN~~~---~LD---~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~-~d~~l 389 (680)
+..++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++........ .+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555543321 2 5788888887665 344 66666 56555999999999999999887754322111 12234
Q ss_pred HHHHhhCC------CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 005738 390 QRLAALTP------GFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRV 435 (680)
Q Consensus 390 ~~la~~t~------G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v 435 (680)
..++..+. | .++.+.++++.|...+..++...++.+++..++...
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 66777777 6 567888999988888877788889999998887653
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=1.3e-13 Score=129.21 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=81.0
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccC
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGV 268 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~ 268 (680)
.+++|.+.+.+.+.+.+..+. ..+.++||+||||||||++|++++..+ +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 368899999999988877642 235689999999999999999999987 78999 999876543
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 269 GPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 269 ~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
......|..+. .++|||||||.+.. ..+.. |+..|.. ...++.+|++||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~------------~~q~~---Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR------------EQQYH---LVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH------------HHHHH---HHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH------------HHHHH---HHHHHhh--cCCCEEEEEECCcC
Confidence 33455666664 48999999999832 23333 3433432 34457788888864
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.45 E-value=4.3e-14 Score=132.28 Aligned_cols=112 Identities=19% Similarity=0.263 Sum_probs=81.4
Q ss_pred ccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhH
Q 005738 193 DVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSR 272 (680)
Q Consensus 193 dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~ 272 (680)
+++|.+++.+++.+.+..+. ..+.++||+||||||||++|++++..++ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999999988887542 2356899999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
...+|..+. .++|||||+|.+.. ..+..+.+++... ...++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~------------~~q~~Ll~~l~~~----~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR------------NIQTGITFIIGKA----ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH------------HHHHHHHHHHHHH----TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH------------HHHHHHHHHHHhC----CCCCEEEEEecCCC
Confidence 455666553 48999999998832 2334444444432 24567888888854
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.41 E-value=1.7e-12 Score=149.40 Aligned_cols=221 Identities=20% Similarity=0.249 Sum_probs=134.6
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---eEEeechhhh
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSMSGSDFM 262 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~---~i~is~s~~~ 262 (680)
-+..+|++++|++.+++.+...+.. ...++|+||||||||++|+++|+.+... .+.+.+....
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred ccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 3456799999999998877766542 2589999999999999999999987432 1222111000
Q ss_pred ------------------h--------------------------------------hhccCchhHHHHHHH--------
Q 005738 263 ------------------E--------------------------------------MFVGVGPSRVRSLFQ-------- 278 (680)
Q Consensus 263 ------------------~--------------------------------------~~~g~~~~~vr~lf~-------- 278 (680)
+ .++.........+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0 000000001111221
Q ss_pred ---------------HHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc----C------------CC
Q 005738 279 ---------------EARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD----G------------FG 327 (680)
Q Consensus 279 ---------------~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md----~------------~~ 327 (680)
......+++|||||+|.+ +...+..+..+|..-. + ..
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~ 248 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEP 248 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGS------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSC
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhC------------CHHHHHHHHHHHHcCcEEecccccccccccCCCCc
Confidence 011234679999999988 2333444444444211 1 01
Q ss_pred CCCCeEEEeccCCC--CCCchhhcCCCccc---cccccCC--C-CHHHHHHHHHHHhhccc---CCCCc-chhHHHHHhh
Q 005738 328 TTAGVVVLAGTNRP--DILDKALLRPGRFD---RQITIDK--P-DIKGRDQIFQIYLKKLK---LDNEP-SFYSQRLAAL 395 (680)
Q Consensus 328 ~~~~ViVIaaTN~~--~~LD~aLlRpgRfd---~~I~v~~--P-d~~eR~~Il~~~l~~~~---l~~~~-d~~l~~la~~ 395 (680)
...++.||++||+. +.++++|++ ||+ ..+.++. + .......+++.+.+... ..... +..+..|...
T Consensus 249 ~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 249 VPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp EECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred cceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 12467899999976 679999999 996 3444432 2 34456666655444322 11111 2223444442
Q ss_pred ---CCCC------CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 005738 396 ---TPGF------AGADIANVCNEAALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 396 ---t~G~------sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
..|- +.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 327 ~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 327 AQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3553 68999999999998888888999999999999965
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.40 E-value=2.6e-13 Score=169.01 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=109.7
Q ss_pred CCcccccccccchHHHHHHHHHHHH-hcC----------hhhHhh------hcCC----------CCCe--EEEEcCCCC
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHF-LKN----------PKKYEE------LGAK----------IPKG--ALLVGPPGT 236 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~-l~~----------~~~~~~------~g~~----------~p~g--vLL~GppGt 236 (680)
...++|+||.|++++|+++.+.+.+ ++. ++.++. .|.. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3458999999999999999998877 532 455655 3333 6777 999999999
Q ss_pred hHHHHHHHHHHhc---CCCeEEeechhhh------------hhhccC----chhHHHHHHHHHHhcCCeEEEEcCcchhh
Q 005738 237 GKTLLAKATAGES---GVPFLSMSGSDFM------------EMFVGV----GPSRVRSLFQEARQCAPSIVFIDEIDAIG 297 (680)
Q Consensus 237 GKT~LAralA~e~---~~~~i~is~s~~~------------~~~~g~----~~~~vr~lf~~A~~~~P~ILfIDEiD~L~ 297 (680)
|||+||++++.+. |-|.+.++..+.. +.+++. +++.++.+|..|+..+||+||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5565556554422 455666 78899999999999999999999999999
Q ss_pred hhcCC-CCCCC-CChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 298 RARGR-GGFSG-GNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 298 ~~r~~-~~~~~-~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
+.+.. +..+. ...-..+.++|+|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 88431 11111 1134456899999999997777788888 67753
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=7.6e-12 Score=133.46 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=112.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCe------------------------EEeechhhhhhhccCchhHHHHHH
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPF------------------------LSMSGSDFMEMFVGVGPSRVRSLF 277 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~------------------------i~is~s~~~~~~~g~~~~~vr~lf 277 (680)
.+.|+++||+||||+|||++|+++|+.+.++. +.++..+ .-...+...++.++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence 35678999999999999999999999875432 2222110 00012345677887
Q ss_pred HHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCc
Q 005738 278 QEARQC----APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGR 353 (680)
Q Consensus 278 ~~A~~~----~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgR 353 (680)
+.+... .+.|++|||+|.+.. ...|.|+..++. +..++++|.+||.++.+.+++++ |
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--R 158 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--R 158 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--T
T ss_pred HHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--c
Confidence 776532 358999999999821 346778888876 45678888888999999999999 8
Q ss_pred cccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHH
Q 005738 354 FDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEA 411 (680)
Q Consensus 354 fd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eA 411 (680)
+ ..+.+++|+.++..++++... . .+ +..+..++..+.| +.+.+.++++.+
T Consensus 159 c-~~~~~~~~~~~~~~~~L~~~~---~--~~-~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 159 C-RLHYLAPPPEQYAVTWLSREV---T--MS-QDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp S-EEEECCCCCHHHHHHHHHHHC---C--CC-HHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred c-eeeeCCCCCHHHHHHHHHHhc---C--CC-HHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 7 579999999999999888765 1 12 2224567777766 445555555543
No 85
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=99.29 E-value=7.9e-12 Score=109.65 Aligned_cols=84 Identities=36% Similarity=0.605 Sum_probs=72.0
Q ss_pred ccccchhHHHHHhcCCCCccEEEEecCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeCCchhHHHH
Q 005738 24 FSQISFQEFKNKLLEPGLVDRIVVTNKSVAKVFVKSTPRSTNETNDDFTQSPVNGSPDKRNLSQCKYYFNIGSVESFEEK 103 (680)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (680)
.++|||++|.++||++|.|++|+|.+++.++|++++++.. ...+.|+|++++++.|+++
T Consensus 15 ~~eIs~~eF~~~~L~kG~V~kI~V~nk~~v~V~l~~~a~~---------------------~~~~~~~f~IGSvd~FE~~ 73 (99)
T 2lna_A 15 GREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTP---------------------VDGQYVWFNIGSVDTFERN 73 (99)
T ss_dssp SEECCHHHHHHHTGGGTCEEEEEEETTTEEEEEECTTTSC---------------------STTCCEEEECSCHHHHHHH
T ss_pred CcccCHHHHHHHHhhCCCceEEEEEcCCEEEEEEcCCCcC---------------------CCCceEEEEeCCHHHHHHH
Confidence 3799999999789999999999999888999999875421 0112379999999999999
Q ss_pred HHHHHHHcCCCCCCccceeeecchh
Q 005738 104 LEEAQEALGIDPHDYIPVTYENEVN 128 (680)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (680)
|+++|.++||++.+++|+.|.++.+
T Consensus 74 Le~aQ~el~i~~~~~ipV~Y~~e~~ 98 (99)
T 2lna_A 74 LETLQQELGIEGENRVPVVYIAESD 98 (99)
T ss_dssp HHHHHHHTTCCTTTCCCEEECCCTT
T ss_pred HHHHHHHcCCCcccccCeEEeecCC
Confidence 9999999999999999999987653
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=104.27 Aligned_cols=75 Identities=31% Similarity=0.587 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Q 005738 361 DKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 361 ~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~ 437 (680)
|+|+.++|.+||+.|+++..+..++++ ..||..|.||||+||.++|++|++.|.+++...|+.+||..|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl--~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCH--HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999887666654 899999999999999999999999999999999999999999998764
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=105.96 Aligned_cols=78 Identities=29% Similarity=0.559 Sum_probs=71.1
Q ss_pred ccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc
Q 005738 359 TIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGG 438 (680)
Q Consensus 359 ~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g 438 (680)
.-.+||.++|.+||+.++++..++.++++ ..||..|.||||+||.++|++|++.|.++....|+++||..|++++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl--~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCC--HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 45689999999999999999888766665 8999999999999999999999999999999999999999999988653
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.24 E-value=1.7e-11 Score=105.48 Aligned_cols=79 Identities=32% Similarity=0.571 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccccccc
Q 005738 364 DIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGGLEKKN 443 (680)
Q Consensus 364 d~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~~~~~ 443 (680)
|.++|.+||+.|+++.+++.++++ ..||..|+||||+||.++|++|++.|.+++...|+.+||..|++++..|.++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl--~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRW--ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCH--HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCH--HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 567899999999999888766654 899999999999999999999999999999999999999999999998887654
Q ss_pred h
Q 005738 444 K 444 (680)
Q Consensus 444 ~ 444 (680)
.
T Consensus 80 ~ 80 (88)
T 3vlf_B 80 S 80 (88)
T ss_dssp -
T ss_pred c
Confidence 3
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.1e-11 Score=125.71 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc------CCCeEEeechhhhhhhccCc
Q 005738 196 GCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES------GVPFLSMSGSDFMEMFVGVG 269 (680)
Q Consensus 196 G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~------~~~~i~is~s~~~~~~~g~~ 269 (680)
|++++.+.|...+.. + + +..+||+||||+|||++|+++|+.+ ...++.++.++ ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 566777777776542 1 2 3578999999999999999999864 33566666542 0124
Q ss_pred hhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 270 PSRVRSLFQEARQCA----PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 270 ~~~vr~lf~~A~~~~----P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
-..+|.+++.+.... ..|++|||+|.+.. ...|.|+..|+. +...+++|.+||.++.+.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~---------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChHhCh
Confidence 456788888875432 36999999999822 346778888876 456677777888899999
Q ss_pred hhhcCCCccccccccCCCCHHHHHHHHHHHh
Q 005738 346 KALLRPGRFDRQITIDKPDIKGRDQIFQIYL 376 (680)
Q Consensus 346 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l 376 (680)
|++++ | .+.+++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 78999999999999888776
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.19 E-value=1.3e-10 Score=150.85 Aligned_cols=139 Identities=24% Similarity=0.369 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHH---------------hcCCeEE
Q 005738 225 PKGALLVGPPGTGKTLLA-KATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEAR---------------QCAPSIV 288 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LA-ralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~---------------~~~P~IL 288 (680)
.+++||+||||||||++| ++++...+.+++.++++... +...+...+.... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 479999999999999999 55555557788888877643 2234445554431 1234799
Q ss_pred EEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCC--------CCCeEEEeccCCCC-----CCchhhcCCCccc
Q 005738 289 FIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT--------TAGVVVLAGTNRPD-----ILDKALLRPGRFD 355 (680)
Q Consensus 289 fIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~--------~~~ViVIaaTN~~~-----~LD~aLlRpgRfd 355 (680)
||||+|.-...+ .+.......+.+++. ..++.. -.++.+|||||+|. .|+++++| ||
T Consensus 1341 FiDEinmp~~d~------yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1341 FCDEINLPKLDK------YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEETTTCSCCCS------SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred Eecccccccccc------cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 999998642211 122334456666663 223211 13589999999995 79999999 99
Q ss_pred cccccCCCCHHHHHHHHHHHhhcc
Q 005738 356 RQITIDKPDIKGRDQIFQIYLKKL 379 (680)
Q Consensus 356 ~~I~v~~Pd~~eR~~Il~~~l~~~ 379 (680)
..+.++.|+.+++..|+..+++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999888653
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.16 E-value=1.7e-10 Score=125.60 Aligned_cols=211 Identities=22% Similarity=0.299 Sum_probs=128.9
Q ss_pred ccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 005738 191 FKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM--- 264 (680)
Q Consensus 191 f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~--- 264 (680)
+..++|.+...+++.+.+..+... ...+||+|++|||||++|++++... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 457888888888888877765432 3568999999999999999999876 479999999875432
Q ss_pred --hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCC----CC
Q 005738 265 --FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFG----TT 329 (680)
Q Consensus 265 --~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~----~~ 329 (680)
.+|... ......|..|.. ++||||||+.+ +...+..+.++|..-. ... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL------------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC------------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 222210 112345665544 79999999988 3344555555555411 011 12
Q ss_pred CCeEEEeccCCCCCCchhhcCCCccc-------cccccCCCCHHHHHH----HHHHHhhc----ccCCCC-c-chhHHHH
Q 005738 330 AGVVVLAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQIYLKK----LKLDNE-P-SFYSQRL 392 (680)
Q Consensus 330 ~~ViVIaaTN~~~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~----~~l~~~-~-d~~l~~l 392 (680)
.++.||++||..- . .+.+.|+|. ..+.+..|+..+|.+ +++++++. .+.... . ...++.+
T Consensus 271 ~~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 271 VNVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp CCCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred ccEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3578999999632 1 233345553 234566788777643 33444432 222211 1 1123444
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 005738 393 AALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAI 432 (680)
Q Consensus 393 a~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al 432 (680)
....---+-++|++++++|+..+ ....|+.+|+...+
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 44332123468999999887654 45689999887554
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=9.6e-11 Score=113.07 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=78.8
Q ss_pred cccccccccch----HHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeech
Q 005738 188 KVFFKDVAGCD----EAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGS 259 (680)
Q Consensus 188 ~~~f~dv~G~~----~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s 259 (680)
..+|+++++.+ ++.+.+++++..+. .....+++|+||||||||+|++++++.+ |..++.++..
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45788887643 33333333333222 2235789999999999999999999876 6778888888
Q ss_pred hhhhhhccCchh-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 260 DFMEMFVGVGPS-RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 260 ~~~~~~~g~~~~-~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
++.+.+...... ....++... ..|.+|+|||++.. +.+......+..++.... ..+..+|.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~----------~~~~~~~~~l~~ll~~~~----~~~~~ii~ts 140 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE----------RLSDWQRELISYIITYRY----NNLKSTIITT 140 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS----------CCCHHHHHHHHHHHHHHH----HTTCEEEEEC
T ss_pred HHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC----------cCCHHHHHHHHHHHHHHH----HcCCCEEEEc
Confidence 776543211000 001122222 25789999999754 224445556666665542 1345666777
Q ss_pred CCCC
Q 005738 339 NRPD 342 (680)
Q Consensus 339 N~~~ 342 (680)
|.+.
T Consensus 141 n~~~ 144 (180)
T 3ec2_A 141 NYSL 144 (180)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 7543
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.02 E-value=5.2e-10 Score=94.87 Aligned_cols=74 Identities=27% Similarity=0.441 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccc
Q 005738 364 DIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGGL 439 (680)
Q Consensus 364 d~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~ 439 (680)
|.++|.+||+.|+++.+++.++++ ..||..|.||||+||.++|++|++.|.+++...|+++||..|++++..+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl--~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDL--EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCT--HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 678999999999999887766664 89999999999999999999999999999989999999999999886543
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.95 E-value=3.6e-10 Score=95.77 Aligned_cols=72 Identities=26% Similarity=0.281 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccc
Q 005738 366 KGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDRVIGGL 439 (680)
Q Consensus 366 ~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~v~~g~ 439 (680)
++|.+||+.|+++.++..++++ ..||..|+||||+||.++|++|++.|.+++...|+.+||..|++++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl--~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADL--DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCS--TTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 4789999999998887666664 88999999999999999999999999999999999999999999886553
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.92 E-value=1.3e-09 Score=106.84 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=63.8
Q ss_pred cccccccccchHHHH-HHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 188 KVFFKDVAGCDEAKQ-EIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~-~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
..+|+++++.+...+ .+..+..++..... ...|.+++|+||||||||++|++++.++ +.+++.++++++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 457999988663322 22323233221110 0124799999999999999999999987 77899999988765
Q ss_pred hhccCc-hhHHHHHHHHHHhcCCeEEEEcCcchh
Q 005738 264 MFVGVG-PSRVRSLFQEARQCAPSIVFIDEIDAI 296 (680)
Q Consensus 264 ~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~L 296 (680)
.+.... ...+..++..... +++|+|||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 532211 1112233333332 469999999765
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.87 E-value=5.6e-09 Score=114.88 Aligned_cols=190 Identities=17% Similarity=0.098 Sum_probs=109.8
Q ss_pred CeEEEEcCCCChHHHHHHHH-HHhcCCCeEEeec--h---hhhhhhcc-CchhHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 005738 226 KGALLVGPPGTGKTLLAKAT-AGESGVPFLSMSG--S---DFMEMFVG-VGPSRVRSLFQEARQCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAral-A~e~~~~~i~is~--s---~~~~~~~g-~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~ 298 (680)
-++||.|+||| ||++|+++ ++.+.. .+++++ + .+...+.+ .+...-...+..|. -.++|||||+.+.
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~- 313 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLAD---GGILAVDHLEGAP- 313 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTT---TSEEEEECCTTCC-
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEcCCCcccCCCeeEEcC---CCeeehHhhhhCC-
Confidence 37999999999 99999999 765533 222222 1 11111000 00000011233332 2799999998872
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcC-------CCCCCCeEEEeccCCCC-----------CCchhhcCCCcccccc-c
Q 005738 299 ARGRGGFSGGNDERESTLNQLLVEMDG-------FGTTAGVVVLAGTNRPD-----------ILDKALLRPGRFDRQI-T 359 (680)
Q Consensus 299 ~r~~~~~~~~~~~~~~~l~~LL~~md~-------~~~~~~ViVIaaTN~~~-----------~LD~aLlRpgRfd~~I-~ 359 (680)
. .+...|++.|+. ..-+..+.||||+|..+ .|+++++. |||..+ .
T Consensus 314 -----------~---~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~ 377 (506)
T 3f8t_A 314 -----------E---PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFL 377 (506)
T ss_dssp -----------H---HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEET
T ss_pred -----------H---HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEe
Confidence 2 344555555542 11235689999999865 78899999 998644 4
Q ss_pred cCCCCHHHH---------HHHHHHH---hh--c--ccCCCCcchhHHHH------H--h------hCCCCCHHHHHHHHH
Q 005738 360 IDKPDIKGR---------DQIFQIY---LK--K--LKLDNEPSFYSQRL------A--A------LTPGFAGADIANVCN 409 (680)
Q Consensus 360 v~~Pd~~eR---------~~Il~~~---l~--~--~~l~~~~d~~l~~l------a--~------~t~G~sgadL~~lv~ 409 (680)
++.|+.+.- .+.++.+ .+ . ..++......+..+ . . ...|.|++.+..|++
T Consensus 378 ~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiR 457 (506)
T 3f8t_A 378 GVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVER 457 (506)
T ss_dssp TC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred cCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHH
Confidence 566664331 1222222 22 1 11111111011111 0 0 245889999999999
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhc
Q 005738 410 EAALIAARNESAQITMQHFEAAIDRVIG 437 (680)
Q Consensus 410 eAa~~a~r~~~~~It~~d~~~Al~~v~~ 437 (680)
-|...|..+++..|+.+|+.+|+.-+..
T Consensus 458 lA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 458 LAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999975543
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.82 E-value=1.8e-09 Score=113.89 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=70.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--eEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP--FLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRG 303 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~--~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~ 303 (680)
..++|+||||||||+||.++|.+.+.+ |+.+...+.++.+....+..++.+++...+.. +|+||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 447999999999999999999876544 55542233333333333444555555555544 99999999985443211
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhh
Q 005738 304 GFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKAL 348 (680)
Q Consensus 304 ~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aL 348 (680)
+..+. ..+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 202 s~~G~---v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSGG---ISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccch---HHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 11111 1245566666666554556788888888 55556654
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=9.2e-08 Score=100.83 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=114.1
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh------
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF------ 261 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~------ 261 (680)
....+.++|-++..+.|.+ +. . ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3345678998877776665 32 1 378999999999999999999998777788876542
Q ss_pred -----hhhh---c------------------c-----C---------chhHHHHHHHHHHhc--CCeEEEEcCcchhhhh
Q 005738 262 -----MEMF---V------------------G-----V---------GPSRVRSLFQEARQC--APSIVFIDEIDAIGRA 299 (680)
Q Consensus 262 -----~~~~---~------------------g-----~---------~~~~vr~lf~~A~~~--~P~ILfIDEiD~L~~~ 299 (680)
...+ + + . ....+..++...... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0000 0 0 0 012344555554443 3899999999998531
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchh-----hc--CCCccccccccCCCCHHHHHHHH
Q 005738 300 RGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKA-----LL--RPGRFDRQITIDKPDIKGRDQIF 372 (680)
Q Consensus 300 r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~a-----Ll--RpgRfd~~I~v~~Pd~~eR~~Il 372 (680)
. .......+..+.... .++.+|.+++....+... .. -.||+...+.+++.+.++..+++
T Consensus 153 ~--------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 153 R--------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp T--------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred C--------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 0 011123344443321 245555555432211111 00 12466678899999999999999
Q ss_pred HHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHH
Q 005738 373 QIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNE 410 (680)
Q Consensus 373 ~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~e 410 (680)
+..+...+...+.. ..+...+.|+. .-+..++..
T Consensus 219 ~~~~~~~~~~~~~~---~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKDY---EVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCCH---HHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHcCCCCCcH---HHHHHHhCCCH-HHHHHHHHH
Confidence 88776444333221 67888888865 446655543
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=8.4e-09 Score=97.16 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARG 301 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~ 301 (680)
...++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 4679999999999999999999987 777888888776432 1123578999999987621
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCCe-EEEeccC-CCCCCc--hhhcCCCcccccccc
Q 005738 302 RGGFSGGNDERESTLNQLLVEMDGFGTTAGV-VVLAGTN-RPDILD--KALLRPGRFDRQITI 360 (680)
Q Consensus 302 ~~~~~~~~~~~~~~l~~LL~~md~~~~~~~V-iVIaaTN-~~~~LD--~aLlRpgRfd~~I~v 360 (680)
..++.+..++..+.. .... +|| +|| .|+.+. +.|.+ |+..-..+
T Consensus 98 ---------~~~~~l~~li~~~~~---~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 98 ---------EEQALLFSIFNRFRN---SGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ---------HHHHHHHHHHHHHHH---HTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ---------HHHHHHHHHHHHHHH---cCCcEEEE-ECCCCHHHccccHHHHH--HHhcCeeE
Confidence 114455555554321 2222 444 555 455443 67776 77544433
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.79 E-value=1.6e-08 Score=109.34 Aligned_cols=194 Identities=21% Similarity=0.356 Sum_probs=114.1
Q ss_pred cccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhhhhh-----
Q 005738 192 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSDFMEM----- 264 (680)
Q Consensus 192 ~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~~~~~----- 264 (680)
.+++|.+....++.+.+..+.. ....+|++|++||||+++|++++...+. +|+.++|+.+-+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3578998888888887766432 2356999999999999999999987743 3999999865321
Q ss_pred hccCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhc--CCCC----CCC
Q 005738 265 FVGVGP-------SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMD--GFGT----TAG 331 (680)
Q Consensus 265 ~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md--~~~~----~~~ 331 (680)
.+|... ..-...|+.|.. ++||||||+.+ +...+..+..+|+.-. .... ..+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL------------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS------------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhC------------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 222110 111234555543 79999999998 3344555555555321 1111 125
Q ss_pred eEEEeccCCCCCCchhhcCCCcccc-------ccccCCCCHHHHH----HHHHHHhhcc----cCC-CCc-chhHHHHHh
Q 005738 332 VVVLAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRD----QIFQIYLKKL----KLD-NEP-SFYSQRLAA 394 (680)
Q Consensus 332 ViVIaaTN~~~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~----~Il~~~l~~~----~l~-~~~-d~~l~~la~ 394 (680)
+.+|++||.. +. .+...|+|.. .+.+..|+..+|. .++++++++. +.. ... +..++.|..
T Consensus 264 ~rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 264 IRVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CEEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eEEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 7789999853 22 2333455532 4456677776653 3445554332 211 111 112344444
Q ss_pred hC-CCCCHHHHHHHHHHHHHH
Q 005738 395 LT-PGFAGADIANVCNEAALI 414 (680)
Q Consensus 395 ~t-~G~sgadL~~lv~eAa~~ 414 (680)
.. +| +-++|.+++.+|+..
T Consensus 341 ~~wpG-NvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 341 QEWKG-NVRELKNLIERAVIL 360 (368)
T ss_dssp CCCTT-HHHHHHHHHHHHHHT
T ss_pred CCCCc-HHHHHHHHHHHHHHh
Confidence 44 33 347788888877654
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.78 E-value=3.3e-07 Score=96.35 Aligned_cols=190 Identities=15% Similarity=0.167 Sum_probs=112.6
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh------
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM------ 262 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~------ 262 (680)
..-+.++|.++..+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ .+++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 3446789999988888776642 1 5789999999999999999999875 6667664321
Q ss_pred ------hhh---ccC-----------------c----hhHHHHHHHH----HHhcCCeEEEEcCcchhhhhcCCCCCCCC
Q 005738 263 ------EMF---VGV-----------------G----PSRVRSLFQE----ARQCAPSIVFIDEIDAIGRARGRGGFSGG 308 (680)
Q Consensus 263 ------~~~---~g~-----------------~----~~~vr~lf~~----A~~~~P~ILfIDEiD~L~~~r~~~~~~~~ 308 (680)
..+ ++. . ...+..++.. +....|.+|+|||+|.+..... ..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-----~~ 147 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-----RG 147 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----TT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----cc
Confidence 110 000 0 1122333322 2223489999999999843100 01
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc---------hhhcCCCccccccccCCCCHHHHHHHHHHHhhcc
Q 005738 309 NDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD---------KALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKL 379 (680)
Q Consensus 309 ~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD---------~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~ 379 (680)
.......+..++.. . .++.+|.++.....++ ..+ .||+...+.+++.+.++..++++..+...
T Consensus 148 ~~~~~~~L~~~~~~---~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 148 GKELLALFAYAYDS---L---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp THHHHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHh---c---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 12222333333322 1 2455555544321111 112 24666688999999999999998877654
Q ss_pred cCCCCcchhHHHHHhhCCCCCHHHHHHHHH
Q 005738 380 KLDNEPSFYSQRLAALTPGFAGADIANVCN 409 (680)
Q Consensus 380 ~l~~~~d~~l~~la~~t~G~sgadL~~lv~ 409 (680)
+...+.+ ....+...+.|+. .-+..++.
T Consensus 220 ~~~~~~~-~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 220 NLDVPEN-EIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp TCCCCHH-HHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHhCCCH-HHHHHHHH
Confidence 4333322 3467788888865 44555554
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.68 E-value=1.5e-07 Score=122.70 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=94.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGG 304 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~ 304 (680)
..|+++.||+|||||.+++++|+.+|.+++.++|++-. ..+.+..+|..+.... +++++||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 36789999999999999999999999999999998743 3456677787776644 79999999887
Q ss_pred CCCCChHHHHHHHHHHHh----hcC-----------CCCCCCeEEEeccCC----CCCCchhhcCCCccccccccCCCCH
Q 005738 305 FSGGNDERESTLNQLLVE----MDG-----------FGTTAGVVVLAGTNR----PDILDKALLRPGRFDRQITIDKPDI 365 (680)
Q Consensus 305 ~~~~~~~~~~~l~~LL~~----md~-----------~~~~~~ViVIaaTN~----~~~LD~aLlRpgRfd~~I~v~~Pd~ 365 (680)
..+....+++.+.. +.. +.-+....|++|.|. ...|+++|.+ || +.+.+..||.
T Consensus 710 ----~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 710 ----DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred ----ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 23344444433332 211 112345678888883 3568999998 89 8899999999
Q ss_pred HHHHHHHH
Q 005738 366 KGRDQIFQ 373 (680)
Q Consensus 366 ~eR~~Il~ 373 (680)
+...+|+-
T Consensus 783 ~~i~ei~l 790 (2695)
T 4akg_A 783 GTIAEMIL 790 (2695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887753
No 103
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.66 E-value=1.5e-08 Score=106.77 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=60.5
Q ss_pred ccccccccchHHHH-HHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhhh
Q 005738 189 VFFKDVAGCDEAKQ-EIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFME 263 (680)
Q Consensus 189 ~~f~dv~G~~~~k~-~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~~ 263 (680)
.+|+++.+...... .+.....++... +...+.+++|+||||||||+||+++|.++ +.+++.++++++..
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 57999887542222 222222232211 11125799999999999999999999865 47888899988876
Q ss_pred hhccCc-hhHHHHHHHHHHhcCCeEEEEcCcchh
Q 005738 264 MFVGVG-PSRVRSLFQEARQCAPSIVFIDEIDAI 296 (680)
Q Consensus 264 ~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~L 296 (680)
.+.... ...+...+.... .+.+|+|||++..
T Consensus 195 ~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 195 DVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 543321 111122222222 3469999999655
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.60 E-value=5.3e-08 Score=105.44 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=78.6
Q ss_pred hcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhh-
Q 005738 220 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGR- 298 (680)
Q Consensus 220 ~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~- 298 (680)
++++.+..++|+||||+|||||++++++..+..++.+...+- ... |......+..++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~----------~~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD----------RLN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT----------THH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch----------hHH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 367777889999999999999999999988776655433221 100 1111112346789999998865
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCC
Q 005738 299 ARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDK 362 (680)
Q Consensus 299 ~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~ 362 (680)
.+.. .... .. .....+...+|| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l---~~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDL---PSGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTC---CCCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhc---cccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2211 0111 11 123344445554 35678889999999 79999999998877755
No 105
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.58 E-value=2.5e-08 Score=98.60 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHh--------cC-CCeEEeechhhhhhhc----------cC-----chhHHHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGE--------SG-VPFLSMSGSDFMEMFV----------GV-----GPSRVRSLFQE 279 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e--------~~-~~~i~is~s~~~~~~~----------g~-----~~~~vr~lf~~ 279 (680)
.+.-.|++|+||||||++|.+.+.. .| .+++..++.++.-... .. ....+.+.+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3456899999999999999886433 35 7776676665532211 11 11222322211
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccc
Q 005738 280 ARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQIT 359 (680)
Q Consensus 280 A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~ 359 (680)
+ ....+||+|||++.+.+.+... .. . ..++..+... ...++-||.+|+.++.||.++++ |++.+++
T Consensus 84 ~-~~~~~vliIDEAq~l~~~~~~~----~e-~-----~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~ 149 (199)
T 2r2a_A 84 P-ENIGSIVIVDEAQDVWPARSAG----SK-I-----PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYH 149 (199)
T ss_dssp G-GGTTCEEEETTGGGTSBCCCTT----CC-C-----CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEE
T ss_pred c-ccCceEEEEEChhhhccCcccc----ch-h-----HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEE
Confidence 2 2346899999999997544211 01 1 1244444432 34456777788889999999988 9999999
Q ss_pred cCCCCHHH
Q 005738 360 IDKPDIKG 367 (680)
Q Consensus 360 v~~Pd~~e 367 (680)
+..|....
T Consensus 150 l~~~~~~~ 157 (199)
T 2r2a_A 150 IASNKMGM 157 (199)
T ss_dssp EEECSSCC
T ss_pred EcCcccCc
Confidence 98765443
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.45 E-value=1.9e-07 Score=118.07 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----hhhcc------------CchhHHHHHHHHHH
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----EMFVG------------VGPSRVRSLFQEAR 281 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----~~~~g------------~~~~~vr~lf~~A~ 281 (680)
|++.+++++|+||||||||+||.+++.++ |.....++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46778899999999999999999998876 4555555544321 11222 33456677777888
Q ss_pred hcCCeEEEEcCcchhhhhc---CCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 282 QCAPSIVFIDEIDAIGRAR---GRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~~r---~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
..+|++|+|||++.+.+.+ +..+.+ ......+.++++|.+|.++....+++||.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~-~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDS-HMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCC-CTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCEEEEcChhHhccccccccccccc-ccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 8999999999999887653 211111 111135678888888888777777777765
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.32 E-value=4.4e-06 Score=109.75 Aligned_cols=139 Identities=22% Similarity=0.289 Sum_probs=90.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-hcCCCeEEeechhhhhhhccCchhHHHHHHHHH----Hh------------cCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAG-ESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEA----RQ------------CAPSI 287 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~-e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A----~~------------~~P~I 287 (680)
.+++||+||||||||.+++.... ..+.+++.++++.-. ....+...+... +. ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 46899999999999977765444 446677888877643 223344444321 00 11259
Q ss_pred EEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC-------CCCCCeEEEeccCCCC-----CCchhhcCCCccc
Q 005738 288 VFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGF-------GTTAGVVVLAGTNRPD-----ILDKALLRPGRFD 355 (680)
Q Consensus 288 LfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~-------~~~~~ViVIaaTN~~~-----~LD~aLlRpgRfd 355 (680)
+||||++.-. .+ . .+....-..+.+++..-.-+ ..-.++.+|||+|.|. .|+++++| ||
T Consensus 1378 lFiDDiNmp~--~D---~-yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F- 1448 (3245)
T 3vkg_A 1378 VFCDEINLPS--TD---K-YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA- 1448 (3245)
T ss_dssp EEETTTTCCC--CC---T-TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-
T ss_pred EEecccCCCC--cc---c-cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-
Confidence 9999997531 11 1 12223445666666431111 1124688999999883 58999999 99
Q ss_pred cccccCCCCHHHHHHHHHHHhhc
Q 005738 356 RQITIDKPDIKGRDQIFQIYLKK 378 (680)
Q Consensus 356 ~~I~v~~Pd~~eR~~Il~~~l~~ 378 (680)
..+.++.|+.+....|+..++..
T Consensus 1449 ~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 56999999999999998776653
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.31 E-value=1.6e-06 Score=96.15 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=99.3
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec---------cC---CCCCCchhhcCCC
Q 005738 285 PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG---------TN---RPDILDKALLRPG 352 (680)
Q Consensus 285 P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa---------TN---~~~~LD~aLlRpg 352 (680)
|.|+||||+|.|. ....+.|+..|+... ..++|+++ |+ .++.|+|.+++
T Consensus 296 ~~VliIDEa~~l~---------------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGCB---------------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhcC---------------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--
Confidence 4699999999982 246788888888643 33555555 33 26788999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 005738 353 RFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALT-PGFAGADIANVCNEAALIAARNESAQITMQHFEAA 431 (680)
Q Consensus 353 Rfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t-~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~A 431 (680)
||.. +.+++|+.++..++++..+.......+.+ .+..++..+ .| +++...++++.|...|..+++..|+.+|+.+|
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~-~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEE-ALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 9966 69999999999999998886554433333 245666666 45 78888899999988998889999999999999
Q ss_pred HHHHh
Q 005738 432 IDRVI 436 (680)
Q Consensus 432 l~~v~ 436 (680)
+.-++
T Consensus 434 ~~~~~ 438 (456)
T 2c9o_A 434 SELFY 438 (456)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 87543
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.21 E-value=9e-06 Score=86.28 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CC-CeEEeechhhhhhhccCchhHHHHHHHHHHh----cCCeEEEEcCcc
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GV-PFLSMSGSDFMEMFVGVGPSRVRSLFQEARQ----CAPSIVFIDEID 294 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~-~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD 294 (680)
+.++..||+||+|+||++.++++++.+ +. ++..+... +...++.+++.+.. ....|++|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PNTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TTCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CCCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456789999999999999999998865 22 22212110 11345556555532 235799999998
Q ss_pred h-hhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC------CCCchhhcCCCccccccccCCCCHHH
Q 005738 295 A-IGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP------DILDKALLRPGRFDRQITIDKPDIKG 367 (680)
Q Consensus 295 ~-L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~------~~LD~aLlRpgRfd~~I~v~~Pd~~e 367 (680)
. +.. ...+.|+..++.. ..++++|.+|+.+ ..+-+++.+ |. ..+.+.+|+..+
T Consensus 87 ~kl~~---------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 87 NGPNA---------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQ 146 (343)
T ss_dssp SCCCT---------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTH
T ss_pred CCCCh---------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHH
Confidence 7 621 1345566666653 3344444444432 346677777 55 568888999999
Q ss_pred HHHHHHHHhhcccCCCCcchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 005738 368 RDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARNESAQITMQHFEAAIDR 434 (680)
Q Consensus 368 R~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~sgadL~~lv~eAa~~a~r~~~~~It~~d~~~Al~~ 434 (680)
....++..++..+...+.+. +..++..+.| +.+++.+.++..+.. .+...||.+++...+..
T Consensus 147 l~~~l~~~~~~~g~~i~~~a-~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAA-NQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHH-HHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhh
Confidence 99999998887765544433 4667776655 445555555544433 23458999999888754
No 110
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.15 E-value=2.5e-06 Score=84.27 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
+++||+||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 67999999999999999999999865443
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.12 E-value=7.7e-06 Score=79.12 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999998865543
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.05 E-value=1.7e-05 Score=104.25 Aligned_cols=125 Identities=23% Similarity=0.304 Sum_probs=91.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhhhhccCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGF 305 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~ 305 (680)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-. ....+..+|.-+... .+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 4678999999999999999999999999999998743 334566677766654 379999999887
Q ss_pred CCCChHHHHHHHHHHHhh-------------c-C--CCCCCCeEEEeccCC----CCCCchhhcCCCccccccccCCCCH
Q 005738 306 SGGNDERESTLNQLLVEM-------------D-G--FGTTAGVVVLAGTNR----PDILDKALLRPGRFDRQITIDKPDI 365 (680)
Q Consensus 306 ~~~~~~~~~~l~~LL~~m-------------d-~--~~~~~~ViVIaaTN~----~~~LD~aLlRpgRfd~~I~v~~Pd~ 365 (680)
+.+...++.+.+..+ + | +.-+..+.|++|.|. ...|+++|.. || |.+.+..||.
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 233333433333211 1 1 122345778888883 3578999999 89 7899999998
Q ss_pred HHHHHHH
Q 005738 366 KGRDQIF 372 (680)
Q Consensus 366 ~eR~~Il 372 (680)
+...+|+
T Consensus 743 ~~i~ei~ 749 (3245)
T 3vkg_A 743 EMIAQVM 749 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777765
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.87 E-value=2.4e-05 Score=80.42 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV 251 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~ 251 (680)
++++|+||||||||++|+++|+....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 57999999999999999999997644
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=6e-05 Score=74.23 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=27.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
....-++|+||||+|||+|++.++... +.++++++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 334458899999999999999999654 556655543
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=2e-05 Score=77.27 Aligned_cols=39 Identities=26% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
+....-++|+||||+|||+|++.++...+.+.++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 333445899999999999999999986577777777543
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.80 E-value=7.7e-05 Score=74.53 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH--Hh--cCCCeEEeechhhhhh------hccC-------------------------
Q 005738 224 IPKGALLVGPPGTGKTLLAKATA--GE--SGVPFLSMSGSDFMEM------FVGV------------------------- 268 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA--~e--~~~~~i~is~s~~~~~------~~g~------------------------- 268 (680)
...-+.|.||+|+|||||++.++ .. .+...+.++....... .+|.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccc
Confidence 34458899999999999999998 33 2444444443211100 0010
Q ss_pred -----------chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 269 -----------GPSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 269 -----------~~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
.......+........|.+|+|||.-++..... ......+.+..++..+. ..++.||.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~----~~g~tii~v 178 (251)
T 2ehv_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILL----EMGVTTILT 178 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHH----HHCCEEEEE
T ss_pred ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHH----HCCCeEEEE
Confidence 011122333344557899999999987764321 12344455677776653 235677777
Q ss_pred cCCCCCC
Q 005738 338 TNRPDIL 344 (680)
Q Consensus 338 TN~~~~L 344 (680)
|+..+..
T Consensus 179 tH~~~~~ 185 (251)
T 2ehv_A 179 TEAPDPQ 185 (251)
T ss_dssp ECCC---
T ss_pred ECCCCCC
Confidence 8765544
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.74 E-value=4.8e-05 Score=81.55 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh----hhccC------------chhHHHHHHHHHHhcCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME----MFVGV------------GPSRVRSLFQEARQCAP 285 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~----~~~g~------------~~~~vr~lf~~A~~~~P 285 (680)
..-++|+||||+|||+|+..++..+ +.++++++...... ..+|. .+..+..+-...+...|
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 3458899999999999999999875 66777777644211 01111 11112222222234678
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGN--DERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~--~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
++++||.+..+.+...-.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 141 dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 141 DLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999999887521100011111 1234456666665555545556666655
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.73 E-value=5.2e-05 Score=81.67 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=65.7
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh----hccC-----------chhHHHHHHHHH-H
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM----FVGV-----------GPSRVRSLFQEA-R 281 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~----~~g~-----------~~~~vr~lf~~A-~ 281 (680)
|++...-++|+||||+|||+||..++..+ +.++++++...-.+. ..|. ....+...+... +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34444568999999999999999998764 667777775432111 1121 112222233322 3
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 282 QCAPSIVFIDEIDAIGRARGRGGFSGGN--DERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~~r~~~~~~~~~--~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
...+++|+||.+..+.......+..+.. ....+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4568999999999986422110000000 02224456666666544445566666653
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.72 E-value=4.7e-05 Score=75.83 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhh------hhh--hccC---------------c
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSDF------MEM--FVGV---------------G 269 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~~------~~~--~~g~---------------~ 269 (680)
++...-++|+||||+|||+|++.++..+ +...++++..+- ... ..|. .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3334458899999999999999999852 345677765441 100 0111 1
Q ss_pred hhH----HHHHHHHHHhcCCeEEEEcCcchhhh
Q 005738 270 PSR----VRSLFQEARQCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 270 ~~~----vr~lf~~A~~~~P~ILfIDEiD~L~~ 298 (680)
... +..+.+......|.+|+|||+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 22233444456899999999988754
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=7e-05 Score=79.09 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=67.2
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhh--hh----h--hccCc--------------
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSDF--ME----M--FVGVG-------------- 269 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~~--~~----~--~~g~~-------------- 269 (680)
|++...-++|+||||+|||+||..++..+ +.+.++++...- .+ . ..|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 33444558999999999999999999865 456777776431 00 0 01111
Q ss_pred -hh----HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEecc
Q 005738 270 -PS----RVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGT 338 (680)
Q Consensus 270 -~~----~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaT 338 (680)
.. .+..+....+. ..+.+|+||.+..+......+ .+....+++.+.+++..+..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG--RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT--TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 12233334444 678999999999997543211 011123334566666665554444556666653
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.69 E-value=3.2e-05 Score=82.83 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh----hhccCc------------hhHHHHHHHHHHh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME----MFVGVG------------PSRVRSLFQEARQ 282 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~----~~~g~~------------~~~vr~lf~~A~~ 282 (680)
+....-++|+||||+|||+||..++..+ +.+.++++...-.. ...|.. +..+..+...++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3334458999999999999999998754 56677776543111 112211 1111222222335
Q ss_pred cCCeEEEEcCcchhhh
Q 005738 283 CAPSIVFIDEIDAIGR 298 (680)
Q Consensus 283 ~~P~ILfIDEiD~L~~ 298 (680)
..|++|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6799999999999863
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.62 E-value=5.9e-05 Score=95.83 Aligned_cols=119 Identities=15% Similarity=0.250 Sum_probs=77.6
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhhh----ccC--------chhHHHHHHHHHHh---
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEMF----VGV--------GPSRVRSLFQEARQ--- 282 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~~----~g~--------~~~~vr~lf~~A~~--- 282 (680)
|+.....++|+|+||+|||+||..+|..+ +.++++++..+-.+.. +|. .+..+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 36666779999999999999999999876 4578888876543332 231 12234555555543
Q ss_pred -cCCeEEEEcCcchhhh-hcCCCCCCCCC-hHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 283 -CAPSIVFIDEIDAIGR-ARGRGGFSGGN-DERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 283 -~~P~ILfIDEiD~L~~-~r~~~~~~~~~-~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
..|++|+||.++.+.. ....+.....+ .-..+.+++++..|..+....++.||++.+
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999975 22100000111 122345788777777776777788877755
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.61 E-value=0.00011 Score=72.33 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 448899999999999999999844
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.57 E-value=6e-05 Score=71.57 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFME 263 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~~ 263 (680)
|+-++|+|+||+||||++++++..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 467899999999999999999999999998877665543
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.55 E-value=0.00012 Score=78.45 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=50.7
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----hhhccC-----------chhHHHHHHHHH-H
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----EMFVGV-----------GPSRVRSLFQEA-R 281 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----~~~~g~-----------~~~~vr~lf~~A-~ 281 (680)
|++...-++|+||||+|||+||..++..+ +.++++++...-. ....|. ....+..++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34445668999999999999999998764 6677778763211 111111 112233333322 3
Q ss_pred hcCCeEEEEcCcchhhh
Q 005738 282 QCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~ 298 (680)
...+++|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46789999999999864
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.50 E-value=0.00016 Score=77.08 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=63.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhh------hhh--hccC----------------chh-
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSDF------MEM--FVGV----------------GPS- 271 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~~------~~~--~~g~----------------~~~- 271 (680)
.-++|+||||+|||+||..+|..+ +.+.++++...- ... ..|. .+.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~ 202 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQ 202 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHH
Confidence 347899999999999999999863 456677765431 100 0111 111
Q ss_pred --HHHHHHHHHHh--cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccC
Q 005738 272 --RVRSLFQEARQ--CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 339 (680)
Q Consensus 272 --~vr~lf~~A~~--~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN 339 (680)
.+..+....+. ..+.+|+||.+..+....-.+ .+....+.+.+.+++..+..+....++.||.+.+
T Consensus 203 ~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 203 MELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11222333444 678999999999997542110 0111223334556655555444445666666544
No 127
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.48 E-value=0.00016 Score=77.29 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC---------CCeEEeechhhh--h-------hh------------ccC--chhH
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG---------VPFLSMSGSDFM--E-------MF------------VGV--GPSR 272 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~---------~~~i~is~s~~~--~-------~~------------~g~--~~~~ 272 (680)
..-+.|+||||+|||+|++.++..+. ...++++..+.. . .+ +.. ....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 34488999999999999999998762 345677654310 0 00 000 0111
Q ss_pred HHHHHH----HHHh-----cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 273 VRSLFQ----EARQ-----CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 273 vr~lf~----~A~~-----~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
...++. .... ..|.+|+|||+-++......+. +.-..+.+.+.+++..+..+....++.||.+++..
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~--~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST--TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc--ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 122222 2233 5799999999988875431110 11112223344444444433334456677666643
No 128
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.45 E-value=0.001 Score=75.44 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=92.2
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEeechh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSMSGSD-- 260 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is~s~-- 260 (680)
....++|.+...++|.+.+... ...++-++|+||+|+|||+||+.++... ....+.++.+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 3456899999888887765421 0123568999999999999999997532 11234443322
Q ss_pred ---hhhhh------cc----------CchhHHHHHHHHHHh--cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 261 ---FMEMF------VG----------VGPSRVRSLFQEARQ--CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 261 ---~~~~~------~g----------~~~~~vr~lf~~A~~--~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
+...+ .+ .....+...+..... ..|.+|+||+++.. . .
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~----~ 250 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------W----V 250 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------H----H
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------H----H
Confidence 11111 11 011122222332222 26899999999643 0 1
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccc-cCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQIT-IDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~-v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
+.. + ..+..||.||........ . . +.. ..+. +...+.++-.++|..++.... . ........|+..+.|
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~-~-~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKK-A-DLPEQAHSIIKECKG 319 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCG-G-GSCTHHHHHHHHHTT
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCc-c-cccHHHHHHHHHhCC
Confidence 122 2 234566667765432211 1 1 121 1122 246788888889988765311 1 112235788888988
Q ss_pred CCH
Q 005738 399 FAG 401 (680)
Q Consensus 399 ~sg 401 (680)
..-
T Consensus 320 ~PL 322 (591)
T 1z6t_A 320 SPL 322 (591)
T ss_dssp CHH
T ss_pred CcH
Confidence 653
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00049 Score=68.43 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=27.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
+....-++|+||||+|||+|+..++... +.+.++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3344558999999999999998887643 556666654
No 130
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.38 E-value=0.00021 Score=73.25 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=43.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhh----------h-hhhccCchhHHHHHHHHHHhcCCeEEEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG----VPFLSMSGSDF----------M-EMFVGVGPSRVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~----~~~i~is~s~~----------~-~~~~g~~~~~vr~lf~~A~~~~P~ILfI 290 (680)
.-++|+||+|+||||+++++++... ..++ +....+ + ...+|.....++..+..+....|.+|++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3478999999999999999998642 2222 221110 0 0011212234577788888889999999
Q ss_pred cCc
Q 005738 291 DEI 293 (680)
Q Consensus 291 DEi 293 (680)
||.
T Consensus 105 DEp 107 (261)
T 2eyu_A 105 GEM 107 (261)
T ss_dssp SCC
T ss_pred CCC
Confidence 997
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.37 E-value=0.00027 Score=76.92 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCeEEeechhhh--------hhhccCc---------------
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSMSGSDFM--------EMFVGVG--------------- 269 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---------~~~~i~is~s~~~--------~~~~g~~--------------- 269 (680)
+..-.-++|+||||+|||+|++.++-.. +...++++..+-. ...+|..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 3333458899999999999999776332 2346777654310 0011111
Q ss_pred hh----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 270 PS----RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 270 ~~----~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
.. .+..+........|.+|+||++-.+.+..-.+ .+...++++.+.+++..+..+....++.||.+++.
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 01 11222333445679999999998875432110 01123344455555555554444456777777664
No 132
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.37 E-value=0.00096 Score=73.41 Aligned_cols=95 Identities=26% Similarity=0.346 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCCeEEEecc----C
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFG--------TTAGVVVLAGT----N 339 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~--------~~~~ViVIaaT----N 339 (680)
..+.+++.|..+ +|+|+||||.+++..+. .+.+...+.+...||..|++-. ..++|++||+. +
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~ 314 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA 314 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC
Confidence 344555555332 59999999999765321 2344455567788888888731 35678999887 2
Q ss_pred CCCCCchhhcCCCccccccccCCCCHHHHHHHHH
Q 005738 340 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQ 373 (680)
Q Consensus 340 ~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~ 373 (680)
.|..+-|.|+. ||+.++.++.++.++..+|+.
T Consensus 315 ~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 315 RPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 34445578887 999999999999999999993
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.37 E-value=0.00013 Score=91.79 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=54.0
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----hhhccC--------chhHHHHHHHHHH----
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----EMFVGV--------GPSRVRSLFQEAR---- 281 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----~~~~g~--------~~~~vr~lf~~A~---- 281 (680)
|+.....++|+||||+|||+||..+|..+ +.++++++..+-. ....|. .+..+..++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 45666779999999999999999998865 5577887764432 222221 1123344444443
Q ss_pred hcCCeEEEEcCcchhhh
Q 005738 282 QCAPSIVFIDEIDAIGR 298 (680)
Q Consensus 282 ~~~P~ILfIDEiD~L~~ 298 (680)
...|++|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999863
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.00028 Score=74.21 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------------C----CCeEEeechhh--hh----h--hccCc-----
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES---------------G----VPFLSMSGSDF--ME----M--FVGVG----- 269 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~---------------~----~~~i~is~s~~--~~----~--~~g~~----- 269 (680)
++...-++|+||||+|||+||..+|..+ | .++++++...- .+ . -.|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL 174 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 3333458899999999999999998753 2 46667765431 11 0 01111
Q ss_pred ----------hh----HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEE
Q 005738 270 ----------PS----RVRSLFQEARQ-CAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVV 334 (680)
Q Consensus 270 ----------~~----~vr~lf~~A~~-~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViV 334 (680)
.. .+..+....+. ..+++|+||.+..+......+ .+....+++.+.+++..+..+....++.|
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG--RGKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC--TTSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 11 11223333344 568899999999997542111 01112333456666666555444556666
Q ss_pred Eecc
Q 005738 335 LAGT 338 (680)
Q Consensus 335 IaaT 338 (680)
|.+.
T Consensus 253 i~~n 256 (322)
T 2i1q_A 253 LVTN 256 (322)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6653
No 135
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.35 E-value=0.00034 Score=74.98 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=58.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec-hhhh---------hhhccCchhHHHHHHHHHHhcCCeEEEEcC
Q 005738 227 GALLVGPPGTGKTLLAKATAGES----GVPFLSMSG-SDFM---------EMFVGVGPSRVRSLFQEARQCAPSIVFIDE 292 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~----~~~~i~is~-s~~~---------~~~~g~~~~~vr~lf~~A~~~~P~ILfIDE 292 (680)
-++|.||+|+||||+++++++.. +..++.+.. .++. ...++.....+...+..+....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 47899999999999999998865 233332211 1110 001122223456688888899999999999
Q ss_pred cchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 293 IDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 293 iD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+- +. .++..++... ..+..|+.+++..+.+
T Consensus 205 p~--------------d~---e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MR--------------DL---ETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CC--------------SH---HHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred CC--------------CH---HHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 72 11 2333333332 2345688888876643
No 136
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00026 Score=74.43 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCCe-EEEEcCCCChHHHHHHHHHHhc-----CCCeEEeechhhhh----hhccCc--------hhHHHHH-H---HHH-
Q 005738 224 IPKG-ALLVGPPGTGKTLLAKATAGES-----GVPFLSMSGSDFME----MFVGVG--------PSRVRSL-F---QEA- 280 (680)
Q Consensus 224 ~p~g-vLL~GppGtGKT~LAralA~e~-----~~~~i~is~s~~~~----~~~g~~--------~~~vr~l-f---~~A- 280 (680)
+|+| ++|+||||+|||+|+..++..+ +...++++..+-.. .-+|.. +.....+ + +..
T Consensus 26 l~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 26 MQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp BCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 3444 6789999999999988776543 56677787643211 111211 1112222 2 222
Q ss_pred --HhcCCeEEEEcCcchhhhhcCCCCCCCC----ChHHHHHHHHHHHhhcCCCCCCCeEEEec
Q 005738 281 --RQCAPSIVFIDEIDAIGRARGRGGFSGG----NDERESTLNQLLVEMDGFGTTAGVVVLAG 337 (680)
Q Consensus 281 --~~~~P~ILfIDEiD~L~~~r~~~~~~~~----~~~~~~~l~~LL~~md~~~~~~~ViVIaa 337 (680)
+...|++|+||-|.++.++..-.+..+. +....+.+++.|..+-.+....++.||.+
T Consensus 106 ~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4457999999999999753211111110 11234566676666554445566666664
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.31 E-value=0.0019 Score=79.02 Aligned_cols=170 Identities=11% Similarity=0.096 Sum_probs=97.6
Q ss_pred cccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc---C--C--CeEEeechh--
Q 005738 190 FFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES---G--V--PFLSMSGSD-- 260 (680)
Q Consensus 190 ~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~---~--~--~~i~is~s~-- 260 (680)
....++|.++..++|.+.+..-. ..++-+.|+|++|+|||+||+.++... . . .++.++.+.
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 34568999998888888764211 124568899999999999999998752 1 1 233444322
Q ss_pred ---hh-------hhhc---------cCchhHHHHHHHHHHhcC--CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHH
Q 005738 261 ---FM-------EMFV---------GVGPSRVRSLFQEARQCA--PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQL 319 (680)
Q Consensus 261 ---~~-------~~~~---------g~~~~~vr~lf~~A~~~~--P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~L 319 (680)
.. .... ......+...+....... +.+|+||+++...
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------------------- 249 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------------------- 249 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------------
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------------
Confidence 11 0000 011223333333333333 7899999986431
Q ss_pred HHhhcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCC-CCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCC
Q 005738 320 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDK-PDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPG 398 (680)
Q Consensus 320 L~~md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~-Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G 398 (680)
.++.+ ..+..||.||..+..... .. .....+.++. .+.++-.++|..+..... .........|++.+.|
T Consensus 250 --~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 250 --VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKG 319 (1249)
T ss_dssp --HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTT
T ss_pred --HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhCC
Confidence 11222 234467777775543221 11 1234567775 788888889987774322 2222335789999988
Q ss_pred CCH
Q 005738 399 FAG 401 (680)
Q Consensus 399 ~sg 401 (680)
..-
T Consensus 320 lPL 322 (1249)
T 3sfz_A 320 SPL 322 (1249)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 138
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.31 E-value=0.0018 Score=73.25 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=92.6
Q ss_pred ccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHH----hcCCC-----eEEeech---hh-
Q 005738 195 AGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG----ESGVP-----FLSMSGS---DF- 261 (680)
Q Consensus 195 ~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~----e~~~~-----~i~is~s---~~- 261 (680)
+|.++.+++|.+.+..-. ...++-+.|+|++|+|||+||+.+++ ..... ++.++.. +.
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499998888887764311 11246688999999999999999996 23222 2333331 11
Q ss_pred ------hhhhccC------------chhHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHh
Q 005738 262 ------MEMFVGV------------GPSRVRSLFQEARQCA-PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVE 322 (680)
Q Consensus 262 ------~~~~~g~------------~~~~vr~lf~~A~~~~-P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~ 322 (680)
....... ....+...+....... +.+|+||+++... +. .+. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~-~ 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--ccc-c
Confidence 1111110 0112334444444444 7999999986541 11 111 1
Q ss_pred hcCCCCCCCeEEEeccCCCCCCchhhcCCCccccccccCCCCHHHHHHHHHHHhhcccCCCCcchhHHHHHhhCCCCC
Q 005738 323 MDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKLKLDNEPSFYSQRLAALTPGFA 400 (680)
Q Consensus 323 md~~~~~~~ViVIaaTN~~~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~~~d~~l~~la~~t~G~s 400 (680)
. .+..||.||....... . . +..+..+.++..+.++-.++|..+................|++.+.|..
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred c------CCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 1 3456677776533211 1 1 1123568888899999999998875322111111122456677776654
No 139
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.28 E-value=0.00014 Score=69.50 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
++.++|+|||||||||+++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999998754
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00066 Score=68.83 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
...|.-++|.|+||+||||+++.++..++.+++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4456779999999999999999999999877777777665
No 141
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.25 E-value=0.00053 Score=70.45 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=39.5
Q ss_pred HHHHHHHHHhc------CCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 273 VRSLFQEARQC------APSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 273 vr~lf~~A~~~------~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
-|-.+..|..+ .|.+|++||- +++.+......+.+++..+. ...+..||.+|++.+
T Consensus 148 QRv~iAraL~~~~~~~~~p~lLllDEP-----------ts~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 148 QRVQLARVLAQLWQPQPTPRWLFLDEP-----------TSALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLN 209 (266)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEECCC-----------CSSCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHH
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCc-----------cccCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHH
Confidence 35567777777 8999999994 55667777777777777653 234567777888654
No 142
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.25 E-value=0.00045 Score=71.36 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|-.+..|....|.+|++||- +++.+......+.+++..+.. ..+..||.+|++.+.+
T Consensus 151 Rv~iAraL~~~P~lLlLDEP-----------ts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEP-----------TAGLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 44566667778999999994 456677777777777766531 1255777788876654
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.00019 Score=69.88 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.+.++|+|||||||||+++++|+.++.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 45699999999999999999999999998654
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.19 E-value=0.0002 Score=68.69 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
...|.-++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34567789999999999999999999999887653
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0038 Score=68.64 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----------hh------h---cc-CchhHHHHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----------EM------F---VG-VGPSRVRSLFQEA 280 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----------~~------~---~g-~~~~~vr~lf~~A 280 (680)
.|.-++++|++|+||||++..+|..+ |..+..+++..+. .. + .+ .....++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36778999999999999999998755 5566656543221 00 1 11 1223346677788
Q ss_pred HhcCCeEEEEcCc
Q 005738 281 RQCAPSIVFIDEI 293 (680)
Q Consensus 281 ~~~~P~ILfIDEi 293 (680)
+...+++++||..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 7777899999986
No 146
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.15 E-value=0.00088 Score=74.05 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=34.5
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
...+|+++- +++++.+..++..+... ...++|.|+||||||+++.+++..+
T Consensus 19 ~p~~~~~Ln--~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 19 SHMTFDDLT--EGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --CCSSCCC--HHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCC--HHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456787773 34455555555544432 1378999999999999999998866
No 147
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.15 E-value=0.00015 Score=70.30 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGES---GVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~---~~~~i~i 256 (680)
-.+++||+|+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999986666543 5554444
No 148
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.13 E-value=0.00064 Score=73.39 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+-|-.+..|....|.+|++||- +++.+...+..+..++..+. ...++.+|.+|++.+
T Consensus 139 rQRVaiArAL~~~P~lLLLDEP-----------ts~LD~~~~~~l~~~l~~l~---~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 139 RQRVAIGRTLVAEPSVFLLDEP-----------LSNLDAALRVQMRIEISRLH---KRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHHHHHHHHHHCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEECC-----------CcCCCHHHHHHHHHHHHHHH---HhCCCEEEEEECCHH
Confidence 3355666777788999999993 45556666666666665552 223567777888654
No 149
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.11 E-value=0.00049 Score=70.69 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..-++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998643
No 150
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.11 E-value=0.0028 Score=63.44 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=25.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
..+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999999999988765 666554443
No 151
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.11 E-value=0.00054 Score=69.02 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+..++..+. ...+..||.+|++++
T Consensus 153 Rv~iAral~~~p~llllDEP-----------ts~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQP-----------TWALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 55566677778999999994 45566666677777776653 122457777888654
No 152
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.10 E-value=0.0017 Score=66.75 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+.++|..+. ...+..||.+|++++
T Consensus 164 Rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~i~~~l~~~~---~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNA-----------TSALDAGNQLRVQRLLYESP---EWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHCT---TTTTSEEEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEECC-----------ccCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHH
Confidence 44566677778999999994 45566667777777776642 223456667777543
No 153
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00038 Score=72.27 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 198 DEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 198 ~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
++..+.+.+++..+... ......|.-++|+||||+||||+++.++.+.+..++.+++..+.
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 44455555555543221 12334467799999999999999999999885556777765554
No 154
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.09 E-value=0.0015 Score=65.91 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
-|-.+..|....|.+|++||- +++.+......+.+++....... .+..||.+|++.+.
T Consensus 134 qRv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~ 191 (237)
T 2cbz_A 134 QRVSLARAVYSNADIYLFDDP-----------LSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY 191 (237)
T ss_dssp HHHHHHHHHHHCCSEEEEEST-----------TTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT
T ss_pred HHHHHHHHHhcCCCEEEEeCc-----------ccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH
Confidence 455677777788999999994 44556666666666653212222 24567777776654
No 155
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.09 E-value=0.0003 Score=67.03 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKA 244 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAra 244 (680)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3478999999999999994
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.0016 Score=64.74 Aligned_cols=38 Identities=32% Similarity=0.287 Sum_probs=27.7
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHh----cCCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGE----SGVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e----~~~~~i~is~ 258 (680)
|++...-++|+|+||+|||+||..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3344455899999999999999877643 3667777664
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.08 E-value=0.0007 Score=70.02 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=27.5
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEee
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMS 257 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is 257 (680)
++....-++|.||||+|||+|++.++... |.++++++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 33334458899999999999999998865 44565554
No 158
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.08 E-value=0.001 Score=66.53 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=42.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh-------hhhhhccCc-----hhHHHHHHHHHHh----cCCeEE
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD-------FMEMFVGVG-----PSRVRSLFQEARQ----CAPSIV 288 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is~s~-------~~~~~~g~~-----~~~vr~lf~~A~~----~~P~IL 288 (680)
++++||+|+||||++..++..+ +..++.++... +.+. .|.. .....++++.+.. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 6779999999999998887765 55666554321 1111 1211 0112456666654 247899
Q ss_pred EEcCcchh
Q 005738 289 FIDEIDAI 296 (680)
Q Consensus 289 fIDEiD~L 296 (680)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999776
No 159
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.07 E-value=0.0014 Score=70.71 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+...+..+..+|..+. ...+..+|.+|+..+
T Consensus 149 RvalArAL~~~P~lLLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEP-----------LSNLDAKLRVAMRAEIKKLQ---QKLKVTTIYVTHDQV 203 (372)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHH---HHHTCEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEEcCC-----------CccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 55566677788999999994 45556666666666666552 122456777787654
No 160
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.001 Score=71.22 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.|-.+..|....|.+|++||- +++.+...+..+..++..+. ...++.+|.+|+..+
T Consensus 145 QRValArAL~~~P~lLLLDEP-----------ts~LD~~~r~~l~~~l~~~~---~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 145 QRAALARALAPDPELILLDEP-----------FSALDEQLRRQIREDMIAAL---RANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHHHHHHTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHH---HHTTCEEEEECCCHH
T ss_pred HHHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 355666777788999999994 44555555555544333321 123567777888654
No 161
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.06 E-value=0.00067 Score=69.33 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+.+++..+.. .+..||.+|+.++
T Consensus 154 Rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~l~~l~~----~g~tiiivtHd~~ 207 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEP-----------TSGLDVLNAREVRKILKQASQ----EGLTILVSSHNML 207 (256)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEEECCHH
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------ccccCHHHHHHHHHHHHHHHh----CCCEEEEEcCCHH
Confidence 44455566678999999994 456677777777777776632 2456666777543
No 162
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00031 Score=67.08 Aligned_cols=31 Identities=39% Similarity=0.619 Sum_probs=27.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.-++|+|+|||||||+|+.++..+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999988653
No 163
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.05 E-value=0.00043 Score=73.35 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=48.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeechhhh------hh--hccCchhHHHHHHHHHHhcCCeEEEEcCc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGSDFM------EM--FVGVGPSRVRSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s~~~------~~--~~g~~~~~vr~lf~~A~~~~P~ILfIDEi 293 (680)
..++|.||+|+|||||++++++.... ..+.+.+..-. .. ++..+..+.+..+..|....|.+|++||.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 56899999999999999999997632 24444432210 10 11113456678888998999999999997
No 164
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.05 E-value=0.00036 Score=65.38 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
-++|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886554
No 165
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.04 E-value=0.00042 Score=66.45 Aligned_cols=39 Identities=36% Similarity=0.505 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
.+.-+.|.||||+||||+++.+++..+.+.+.+++.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 345688999999999999999999877787778776553
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.04 E-value=0.0015 Score=70.26 Aligned_cols=71 Identities=17% Similarity=0.351 Sum_probs=45.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC----CCeEEeech-hh--------hhh-hccCchhHHHHHHHHHHhcCCeEE
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESG----VPFLSMSGS-DF--------MEM-FVGVGPSRVRSLFQEARQCAPSIV 288 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~----~~~i~is~s-~~--------~~~-~~g~~~~~vr~lf~~A~~~~P~IL 288 (680)
.....++|+||+|+||||+++++++... ..++.+... ++ +.. .+|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3344588999999999999999998652 223222211 10 000 011122344667778888899999
Q ss_pred EEcCc
Q 005738 289 FIDEI 293 (680)
Q Consensus 289 fIDEi 293 (680)
++||+
T Consensus 214 lldE~ 218 (372)
T 2ewv_A 214 FVGEM 218 (372)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99997
No 167
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.02 E-value=0.001 Score=71.35 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
-|-.+..|..+.|.+|++||- +++.+......+..+|..+. ...++.||.+|+..+
T Consensus 170 QRVaIArAL~~~P~lLLlDEP-----------Ts~LD~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQA-----------TSALDPATTRSILELLKDIN---RRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHH---HHSCCEEEEEESCHH
T ss_pred HHHHHHHHHhcCCCEEEEECC-----------CccCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHH
Confidence 355666677788999999994 45667777777777777663 233567777888654
No 168
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.01 E-value=0.0011 Score=70.94 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+...+..+..+|..+. ...+..+|.+|+..+
T Consensus 153 RvalArAL~~~P~lLLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEP-----------FAAIDTQIRRELRTFVRQVH---DEMGVTSVFVTHDQE 207 (355)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TCCSSHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEECCCHH
Confidence 45566677788999999993 45566666666666666552 122456777787654
No 169
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.00 E-value=0.00039 Score=66.23 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.++.++|+|+||+||||+++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 346799999999999999999999999887654
No 170
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.99 E-value=0.00033 Score=66.50 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.++|.|||||||||+++++|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 171
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.99 E-value=0.0054 Score=69.32 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=54.4
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC--CCchhhcCCCccccccccCCC
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD--ILDKALLRPGRFDRQITIDKP 363 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~--~LD~aLlRpgRfd~~I~v~~P 363 (680)
-+|+|||++.+.... ..+....+.++... ....+|.+|.+|.+|. .++..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999999886532 12344455555544 3567899999999997 78887776 67788889888
Q ss_pred CHHHHHHHHH
Q 005738 364 DIKGRDQIFQ 373 (680)
Q Consensus 364 d~~eR~~Il~ 373 (680)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 8888877763
No 172
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.99 E-value=0.0021 Score=65.23 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.+|++||- +++.+......+..++..+. . +..||.+|+.++.
T Consensus 153 Rv~iAraL~~~p~lllLDEP-----------ts~LD~~~~~~i~~~l~~~~----~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEA-----------TSALDYESEHVIMRNMHKIC----K-GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCC-----------CSCCCHHHHHHHHHHHHHHH----T-TSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHc----C-CCEEEEEeCCHHH
Confidence 44556666678999999994 45667777777778877763 1 3466667776543
No 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.97 E-value=0.0012 Score=65.89 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+..++..+.. . +..||.+|+..+
T Consensus 148 rv~laral~~~p~lllLDEP-----------t~~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEP-----------TGNLDSANTKRVMDIFLKINE---G-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHHHHTTTCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------CCCCCHHHHHHHHHHHHHHHH---C-CCEEEEEcCCHH
Confidence 33444455667999999994 455677777777777776632 2 456677777643
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.97 E-value=0.0012 Score=72.94 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=29.2
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
|+....-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 44444558899999999999999998754 567777764
No 175
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.95 E-value=0.0012 Score=70.66 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+...+..+..++..+. ...+..+|.+|+..+
T Consensus 141 RvalArAL~~~P~lLLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEP-----------LSNLDANLRMIMRAEIKHLQ---QELGITSVYVTHDQA 195 (359)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHH---HHHCCEEEEEESCHH
T ss_pred HHHHHHHHHcCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEcCCHH
Confidence 55566677788999999994 45556666666666666552 122456777787644
No 176
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.95 E-value=0.00041 Score=66.65 Aligned_cols=32 Identities=41% Similarity=0.632 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh-cCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE-SGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e-~~~~~i~i 256 (680)
+..++|+|+|||||||+++.++.. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999998 68777644
No 177
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00052 Score=64.65 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
+..+.|+|||||||||+++.+|+.++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999987655
No 178
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.94 E-value=0.00046 Score=64.93 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=28.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
..++|.|+|||||||+++.+|..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5789999999999999999999999998754
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.93 E-value=0.00056 Score=66.44 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
..|.-++|+|+|||||||+|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456699999999999999999999999887654
No 180
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.0012 Score=67.11 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh---cCCCeEEeechhhhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE---SGVPFLSMSGSDFMEM 264 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e---~~~~~i~is~s~~~~~ 264 (680)
+.-|+|+|+||+||||+|+.++.. .|.+++.++...+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 456899999999999999999997 7888886776655443
No 181
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.89 E-value=0.00097 Score=66.29 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.||+|+|||||++++++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 182
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.87 E-value=0.00091 Score=67.65 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.++++||- +++-+......+.+++..+.. ..+..||.+|+..+
T Consensus 134 Rv~lAral~~~p~lllLDEP-----------ts~LD~~~~~~~~~~l~~l~~---~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEP-----------LSAVDLKTKGVLMEELRFVQR---EFDVPILHVTHDLI 188 (240)
T ss_dssp HHHHHHHHTTCCSSBEEEST-----------TSSCCHHHHHHHHHHHHHHHH---HHTCCEEEEESCHH
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 44556666778999999994 456677777777777766521 12345666777644
No 183
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.87 E-value=0.003 Score=64.38 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=37.1
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.+..|....|.+|++||- +++.+......+..++..+.. . +..||.+|++.+.+
T Consensus 163 ~iAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEP-----------IAGVAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHTCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred HHHHHHHcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 444455678999999994 456677777777777776632 2 45677778876554
No 184
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.87 E-value=0.00051 Score=65.51 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.|+-++|+|+|||||||+++.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456789999999999999999999998766544
No 185
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.87 E-value=0.0011 Score=70.05 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
++.++|+||+|||||++++.+|+.++.+++.++.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 457899999999999999999999998888776543
No 186
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00049 Score=65.76 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
|.-++|.|+|||||||+|+.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4568999999999999999999999887654
No 187
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.85 E-value=0.00072 Score=65.69 Aligned_cols=32 Identities=31% Similarity=0.630 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
++-++|+|+||+||||+++.+++.+|.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 56799999999999999999999998877653
No 188
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.83 E-value=0.00066 Score=69.05 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGS 259 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s 259 (680)
-++|+|||||||||+|+++|+..+.+++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999998877653
No 189
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.0017 Score=63.11 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36899999999999999999875
No 190
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.83 E-value=0.0015 Score=66.99 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.+|++||- +++.+......+.+++..+.. . +..||.+|+..+.
T Consensus 167 Rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEP-----------TSALDPEMVGEVLSVMKQLAN---E-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHHH---T-TCEEEEECSCHHH
T ss_pred HHHHHHHHHCCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHh---C-CCEEEEEcCCHHH
Confidence 33455556678999999994 456677777777777776632 2 5567777876543
No 191
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.82 E-value=0.00055 Score=64.61 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-hcCCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAG-ESGVPFL 254 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~-e~~~~~i 254 (680)
|.-++|.|+||+||||+|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 55689999999999999999998 4554443
No 192
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.82 E-value=0.00052 Score=64.00 Aligned_cols=29 Identities=38% Similarity=0.584 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
-++|+||||+||||+|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887654
No 193
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0012 Score=70.77 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+...+..+..++..+. ...+..+|.+|+..+
T Consensus 141 RvalArAL~~~P~lLLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEP-----------LSNLDALLRLEVRAELKRLQ---KELGITTVYVTHDQA 195 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESG-----------GGGSCHHHHHHHHHHHHHHH---HHHTCEEEEEESCHH
T ss_pred HHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHH---HhCCCEEEEECCCHH
Confidence 45566677788999999994 33445556666666666552 122456777787654
No 194
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.81 E-value=0.0033 Score=70.42 Aligned_cols=75 Identities=17% Similarity=0.330 Sum_probs=51.9
Q ss_pred Ce-EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC--CCchhhcCCCccccccccC
Q 005738 285 PS-IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD--ILDKALLRPGRFDRQITID 361 (680)
Q Consensus 285 P~-ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~--~LD~aLlRpgRfd~~I~v~ 361 (680)
|. +|+|||+..+.... .......+..+... ....++.+|.+|++|+ .++..++. -|..+|.+.
T Consensus 297 P~ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV--------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CEEEEEEETHHHHHHHH--------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CcEEEEEeCHHHHHhhh--------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 54 89999998875421 12233344444333 2345789999999987 57877766 677888888
Q ss_pred CCCHHHHHHHHH
Q 005738 362 KPDIKGRDQIFQ 373 (680)
Q Consensus 362 ~Pd~~eR~~Il~ 373 (680)
..+..+.+.|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 889888887774
No 195
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.80 E-value=0.0017 Score=69.31 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+..+|..+. ...+..+|.+|+..+
T Consensus 135 RvalAraL~~~P~lLLLDEP-----------~s~LD~~~~~~l~~~l~~l~---~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEP-----------LSALDPRTQENAREMLSVLH---KKNKLTVLHITHDQT 189 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESS-----------STTSCHHHHHHHHHHHHHHH---HHTTCEEEEEESCHH
T ss_pred HHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 44566666778999999994 45566666666767766653 123456777777644
No 196
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.77 E-value=0.00071 Score=63.63 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=27.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+-++|+|+|||||||+++.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4589999999999999999999999887643
No 197
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.76 E-value=0.00071 Score=64.90 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+.-++|.|+|||||||+++.++..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45789999999999999999999999876644
No 198
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.73 E-value=0.0026 Score=66.75 Aligned_cols=38 Identities=26% Similarity=0.130 Sum_probs=28.8
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
|+....-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 44444558999999999999999998654 456766664
No 199
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.73 E-value=0.0061 Score=61.82 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 275 SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 275 ~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
-.+..|....|.+|++||- +++.+......+.+++..+.. .+..||.+|++++.
T Consensus 152 v~iAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDET-----------DSGLDIDALKVVARGVNAMRG----PNFGALVITHYQRI 205 (250)
T ss_dssp HHHHHHHHHCCSEEEEECG-----------GGTTCHHHHHHHHHHHHHHCS----TTCEEEEECSSSGG
T ss_pred HHHHHHHHcCCCEEEEeCC-----------CcCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCHHH
Confidence 3455555667899999995 345566666777777776632 34566777886554
No 200
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.0007 Score=64.28 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
|.-++|.|+|||||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 201
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.73 E-value=0.00079 Score=66.41 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+.-++|.|+|||||||+++.+|..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46789999999999999999999999876554
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.73 E-value=0.0019 Score=71.01 Aligned_cols=38 Identities=24% Similarity=0.154 Sum_probs=29.4
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
|+....-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44444558899999999999999988753 567777765
No 203
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.72 E-value=0.0025 Score=64.95 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+.+++..+.. ..+..||.+|++.+
T Consensus 136 rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEP-----------TSALDLANQDIVLSLLIDLAQ---SQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSS-----------STTSCHHHHHHHHHHHHHHHH---TSCCEEEEEESCHH
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 44555666778999999994 445666677777777766532 22456677777544
No 204
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.71 E-value=0.00074 Score=64.95 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+.-++|+|+|||||||+|+.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 46789999999999999999999998766543
No 205
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.71 E-value=0.00082 Score=65.94 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
++|+|||||||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998887655
No 206
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.70 E-value=0.00075 Score=66.97 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.+.-++|.|+|||||||+++.++..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999998877654
No 207
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.69 E-value=0.0028 Score=63.89 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 276 LFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 276 lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.+..|....|.+|++||- +++.+......+..++..+.. .+..||.+|+.++
T Consensus 149 ~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~l~~~~~----~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEP-----------SLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNAL 200 (240)
T ss_dssp HHHHHHTTCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHH
T ss_pred HHHHHHHcCCCEEEEcCC-----------cccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 344455667999999994 456677777777777776632 2445666777643
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.69 E-value=0.0013 Score=62.59 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
+.-+.|+|++|+||||+++.+++.+ |.+++.+++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4567899999999999999999987 999988876443
No 209
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.69 E-value=0.0039 Score=67.14 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+...+..+..+|..+. ...+..+|.+|+..+
T Consensus 147 RvalArAL~~~P~lLLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEP-----------LSNLDAKLRVRMRAELKKLQ---RQLGVTTIYVTHDQV 201 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECT-----------TTTSCHHHHHHHHHHHHHHH---HHHTCEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEECCC-----------CccCCHHHHHHHHHHHHHHH---HhcCCEEEEECCCHH
Confidence 44556666778999999994 44556666666666666552 122456777787654
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.68 E-value=0.00087 Score=65.67 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
++|+||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999887654
No 211
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.68 E-value=0.0032 Score=66.00 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+-|-.+.+|....|.||++||- +++.+...+..+..++..+.. +..+|.+|++.+.
T Consensus 196 rQRvaiARAL~~~p~iLlLDEP-----------ts~LD~~~~~~i~~~l~~l~~-----~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 196 KQRVAIARTILKAPGIILLDEA-----------TSALDTSNERAIQASLAKVCA-----NRTTIVVAHRLST 251 (306)
T ss_dssp HHHHHHHHHHHHCCSEEEEECC-----------SSCCCHHHHHHHHHHHHHHHT-----TSEEEEECCSHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHcC-----CCEEEEEEcChHH
Confidence 3455677777788999999995 456677777777777766532 2355667776543
No 212
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.00071 Score=64.47 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=23.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
.-++|+|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 213
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.67 E-value=0.0038 Score=64.00 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|-.+..|....|.+|++||- +++.+......+.+++..+.. . +..||.+|+.++.+
T Consensus 146 Rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEP-----------LVGLDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred HHHHHHHHHcCCCEEEEcCc-----------cccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 33455556677999999994 456677777777777776531 2 45677778876543
No 214
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.67 E-value=0.00092 Score=62.59 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.++|+|+|||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999887653
No 215
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.66 E-value=0.0052 Score=61.64 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGS 259 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s 259 (680)
.++++||+|+|||.++.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887777766543
No 216
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.65 E-value=0.0044 Score=63.28 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.||++||- +++.+......+.+++..+. . +..||.+|++++.
T Consensus 163 Rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~i~~~l~~l~----~-~~tviivtH~~~~ 216 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEA-----------TSSLDSKTEYLFQKAVEDLR----K-NRTLIIIAHRLST 216 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECC-----------CCTTCHHHHHHHHHHHHHHT----T-TSEEEEECSSGGG
T ss_pred HHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHH
Confidence 34455666678999999994 45667777777777777763 1 3466677776543
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.63 E-value=0.001 Score=63.46 Aligned_cols=31 Identities=39% Similarity=0.596 Sum_probs=26.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.-++|.|+|||||||+++.++..++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4588999999999999999999998776543
No 218
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.63 E-value=0.005 Score=64.53 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=45.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh-------hhh---c---------cCchh-HHHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM-------EMF---V---------GVGPS-RVRSLFQE 279 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~-------~~~---~---------g~~~~-~vr~lf~~ 279 (680)
..|.-++|+||+|+||||+++.+|..+ +..+..+++..+. ..+ . +.... .....+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 445678999999999999999999865 4555555442211 000 0 11111 22345666
Q ss_pred HHhcCCeEEEEcCc
Q 005738 280 ARQCAPSIVFIDEI 293 (680)
Q Consensus 280 A~~~~P~ILfIDEi 293 (680)
+....|.+|+||+.
T Consensus 182 a~~~~~dvvIiDtp 195 (306)
T 1vma_A 182 ALARNKDVVIIDTA 195 (306)
T ss_dssp HHHTTCSEEEEEEC
T ss_pred HHhcCCCEEEEECC
Confidence 67778999999986
No 219
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.001 Score=66.39 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
+-|+-++|.||||+||+|.|+.|+..+|++. ++..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 4467789999999999999999999998765 4555554
No 220
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.62 E-value=0.00074 Score=66.70 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.|.-++|.||||+||||+++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 35679999999999999999999999976544
No 221
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.61 E-value=0.00089 Score=66.06 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=27.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
..++|.|+|||||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 222
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.001 Score=67.16 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.|.-++|+||||+||||+|+.++..++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 466799999999999999999999998776544
No 223
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.60 E-value=0.0011 Score=64.36 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+.-++|+|+|||||||+++.++..++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45689999999999999999999998866554
No 224
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.58 E-value=0.0012 Score=66.00 Aligned_cols=32 Identities=38% Similarity=0.446 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+..++|.|+|||||||+|+.+|..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999877654
No 225
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.55 E-value=0.0019 Score=73.62 Aligned_cols=97 Identities=24% Similarity=0.370 Sum_probs=55.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh----hhhhccCchhHHHHHHHHH---------HhcCCeEEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF----MEMFVGVGPSRVRSLFQEA---------RQCAPSIVF 289 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~----~~~~~g~~~~~vr~lf~~A---------~~~~P~ILf 289 (680)
..++|+||||||||+++++++..+ +.++..+..+.- +....+.....+..++... .....++|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 568999999999999999998754 666665543221 1111222222333333110 011347999
Q ss_pred EcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCC
Q 005738 290 IDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 340 (680)
Q Consensus 290 IDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~ 340 (680)
|||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 285 IDEasml~---------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG---------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC---------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EcCccCCC---------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 99997661 124556655442 3445666665553
No 226
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.55 E-value=0.0017 Score=69.44 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|.+|++||- +++.+......+..+|..+. ...+..+|.+|+..+
T Consensus 148 RvalAraL~~~P~lLLLDEP-----------~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEP-----------FSNLDARMRDSARALVKEVQ---SRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHHHHHTTCCSEEEEEST-----------TTTSCGGGHHHHHHHHHHHH---HHHCCEEEEEESCHH
T ss_pred HHHHHHHHHhCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 44566667778999999994 44555555566666665542 122456777787654
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.54 E-value=0.0022 Score=62.36 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.53 E-value=0.012 Score=61.10 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhh-------hhhh---c------cCchhHHHHHHHHHHhc
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDF-------MEMF---V------GVGPSRVRSLFQEARQC 283 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~-------~~~~---~------g~~~~~vr~lf~~A~~~ 283 (680)
.+.-++|.||+|+||||++..+|..+ |..+..+++..+ +..+ . ......++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 35678899999999999999998754 545655554321 1111 1 11223444444433 5
Q ss_pred CCeEEEEcC
Q 005738 284 APSIVFIDE 292 (680)
Q Consensus 284 ~P~ILfIDE 292 (680)
.|.+|+||-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 678999994
No 229
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.52 E-value=0.0016 Score=63.28 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
+.-+.|.||+|+||||+++.+++.+|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 45688999999999999999999987654 444443
No 230
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.52 E-value=0.0015 Score=61.82 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=25.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.-++|.||||+||||+++.+++.+|.+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458899999999999999999988866553
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.51 E-value=0.0047 Score=61.47 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
.-+.|.||+|+|||||++++++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4477999999999999999998754
No 232
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.48 E-value=0.00087 Score=71.57 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 195 AGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 195 ~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+.++...+.+.+.+...-.+. ....++|.||||+|||++++++|+.++.+|+.+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g--------~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDN--------YRVCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTC--------SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccC--------CeeEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 344555666655555421111 123689999999999999999999999888654
No 233
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.45 E-value=0.002 Score=61.33 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhh
Q 005738 227 GALLVGPPGTGKTLLAKATAGESG---VPFLSMSGSDF 261 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~---~~~i~is~s~~ 261 (680)
-++|.|+|||||||+++.++..++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 478999999999999999999775 34555555444
No 234
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.44 E-value=0.0034 Score=60.99 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=25.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.-+.|.||+||||||+++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999998 7887763
No 235
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.44 E-value=0.0014 Score=70.94 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
++-|-.+..|....|.+|++||-- ++.+...+..+..++..+. .+..+|.+|++.+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPt-----------s~LD~~~~~~l~~~l~~~~-----~~~tvi~vtHd~e 215 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPS-----------AHLDPVTYQIIRRTLKQAF-----ADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHH-----------HHSCHHHHHHHHHHHHTTT-----TTSCEEEECSSSG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCc-----------cCCCHHHHHHHHHHHHHHh-----CCCEEEEEEcCHH
Confidence 344667788888899999999942 2334444555555555431 2356667777654
No 236
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.43 E-value=0.0094 Score=71.21 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=54.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh-----cCCCe--------------EEeechhhhhhhccCchhHHHHHHHHHH-hcCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE-----SGVPF--------------LSMSGSDFMEMFVGVGPSRVRSLFQEAR-QCAP 285 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e-----~~~~~--------------i~is~s~~~~~~~g~~~~~vr~lf~~A~-~~~P 285 (680)
.-+.|+||.|+||||+.|.++.- .|..+ -.+...+......+.....++.....+. ...|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 45889999999999999998752 23211 0111111111111111112222222221 4679
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCChHH-HHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 286 SIVFIDEIDAIGRARGRGGFSGGNDER-ESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 286 ~ILfIDEiD~L~~~r~~~~~~~~~~~~-~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
++|++||.- .+.+... ......++..+.. ..+..+|.+|+..+...
T Consensus 754 ~LlLLDEP~-----------~GlD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 754 SLVILDELG-----------RGTSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CEEEEESTT-----------TTSCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CEEEEeCCC-----------CCCCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 999999962 2334433 3344466665521 23567888899866543
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.42 E-value=0.0022 Score=64.75 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005738 222 AKIPKG--ALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 222 ~~~p~g--vLL~GppGtGKT~LAralA~e 248 (680)
+.++.| +.|.||+|+|||||++++++.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 334444 789999999999999999984
No 238
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.41 E-value=0.0015 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
.++|.|+||+||||+++.++..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877654
No 239
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.40 E-value=0.0023 Score=61.00 Aligned_cols=30 Identities=27% Similarity=0.138 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is 257 (680)
+.|+|+|||||||+++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88888764
No 240
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.40 E-value=0.0017 Score=64.14 Aligned_cols=33 Identities=39% Similarity=0.662 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
++|.||||+||+|.|+.||+..|++.+ +..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 688999999999999999999988764 445543
No 241
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.39 E-value=0.018 Score=58.93 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
|-.+..|....|.+|++||- +++.+......+.++|..+.. .||.+|+.++.
T Consensus 136 Rv~lAraL~~~p~lllLDEP-----------ts~LD~~~~~~l~~~L~~~~~-------tviivtHd~~~ 187 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEP-----------FENVDAARRHVISRYIKEYGK-------EGILVTHELDM 187 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHSCS-------EEEEEESCGGG
T ss_pred HHHHHHHHHhCCCEEEEECC-----------ccccCHHHHHHHHHHHHHhcC-------cEEEEEcCHHH
Confidence 44566666778999999994 455677777777777766532 56667776543
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.38 E-value=0.015 Score=63.66 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhh----------hhhccC---------c-hhHHHHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFM----------EMFVGV---------G-PSRVRSLFQEA 280 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~----------~~~~g~---------~-~~~vr~lf~~A 280 (680)
.|.-++++||+|+||||++..+|..+ |..+..+++..+. ....|. . ....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999999765 5566555543111 011111 1 11234455666
Q ss_pred HhcCCeEEEEcCcc
Q 005738 281 RQCAPSIVFIDEID 294 (680)
Q Consensus 281 ~~~~P~ILfIDEiD 294 (680)
....+.+|+||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 65678999999863
No 243
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.38 E-value=0.0021 Score=63.28 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=26.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.-+.|.||+||||||+++.+++.+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999987754
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.37 E-value=0.0077 Score=67.69 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=63.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh----hhhh---------------hc---------cCchhHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD----FMEM---------------FV---------GVGPSRVR 274 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~----~~~~---------------~~---------g~~~~~vr 274 (680)
.-++|.||||+|||+|++.+++.. |.+.+++...+ +... .. -.+..+.+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ 361 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHH
Confidence 348899999999999999998754 44555554321 1100 00 02234567
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCC
Q 005738 275 SLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRP 341 (680)
Q Consensus 275 ~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~ 341 (680)
.++..+....|.+|+||=+..|... .........+..++..+.. .++.||.+++..
T Consensus 362 ~~~a~~l~~~p~llilDp~~~Ld~~-------~~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 362 IIKSEINDFKPARIAIDSLSALARG-------VSNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHTTCCSEEEEECHHHHTSS-------SCHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHhhCCCEEEEcChHHHHhh-------CChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 7788888889999999966555221 1112244556666665532 345566666544
No 245
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.36 E-value=0.0028 Score=61.53 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
.+.-+.|.||+|+||||+++++++.+ |...+.+++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34568899999999999999999987 554446665544
No 246
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.36 E-value=0.0058 Score=62.05 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCe-------EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPS-------IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~-------ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+..|....|. +|++||- +++.+......+.+++..+.. . +..||.+|++.+
T Consensus 134 rv~lAraL~~~p~~~~~~~~lllLDEP-----------ts~LD~~~~~~l~~~l~~l~~---~-g~tviivtHd~~ 194 (249)
T 2qi9_C 134 RVRLAAVVLQITPQANPAGQLLLLDEP-----------MNSLDVAQQSALDKILSALSQ---Q-GLAIVMSSHDLN 194 (249)
T ss_dssp HHHHHHHHHHHCTTTCTTCCEEEESST-----------TTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCcCCCCCeEEEEECC-----------cccCCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHH
Confidence 3344455556688 9999994 456677777777777776631 2 456677777654
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.31 E-value=0.0017 Score=62.99 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=25.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
-+.|+|++||||||+++.+++ +|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88777654
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.30 E-value=0.011 Score=57.74 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=45.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech---------hhhhhhc-----------cCc------hhHHHHHH
Q 005738 227 GALLVGPPGTGKTLLAKATAGES---GVPFLSMSGS---------DFMEMFV-----------GVG------PSRVRSLF 277 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s---------~~~~~~~-----------g~~------~~~vr~lf 277 (680)
.+++++++|.|||++|-++|-.+ |.++..+... .+...+. -.. ....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47899999999999999998765 6666655221 2333320 001 23345556
Q ss_pred HHHHhc----CCeEEEEcCcchh
Q 005738 278 QEARQC----APSIVFIDEIDAI 296 (680)
Q Consensus 278 ~~A~~~----~P~ILfIDEiD~L 296 (680)
..+++. ..++|+|||+-..
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCcc
Confidence 666543 3689999999654
No 249
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.29 E-value=0.0059 Score=61.05 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||++.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999854
No 250
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.28 E-value=0.004 Score=71.23 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+-|-.+.+|....|.|+++||. +++-+...+..+.+.+..+. .+..+|..|++++.+
T Consensus 497 ~Qrv~iAral~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEA-----------TSNVDTKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCC-----------CTTCCHHHHHHHHHHHHHHH-----TTSEEEEESCCTTHH
T ss_pred HHHHHHHHHHhcCCCEEEEECC-----------ccCCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 4466677788889999999995 45667777777777776653 135667778877643
No 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.0063 Score=68.71 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.+.|-.+..|....|.||++||- +++.+......+..++..+. ...+..||.+|+..+
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEP-----------T~gLD~~~~~~i~~~l~~l~---~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQP-----------SSYLDVEERYIVAKAIKRVT---RERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 34567788888899999999993 45566666667777776653 123456666677543
No 252
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.28 E-value=0.003 Score=60.97 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCCeEEee
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-GVPFLSMS 257 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-~~~~i~is 257 (680)
+.-+.|.|++|+||||+++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777665
No 253
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.26 E-value=0.0036 Score=71.31 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
|-.+.+|....|.|+++||- +++-+...+..+.+.+..+. . +..+|.+|++++
T Consensus 488 r~~iAral~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~----~-~~tvi~itH~~~ 540 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEA-----------TSALDTESERAIQAALDELQ----K-NKTVLVIAHRLS 540 (582)
T ss_pred HHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHH
Confidence 44566666678999999995 44566677777777776652 1 345666778654
No 254
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0048 Score=70.67 Aligned_cols=57 Identities=12% Similarity=-0.037 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+-|-.+..|....|.||++||= +++.+......+..++..+. ...+..||.+|+..+
T Consensus 473 kQRv~iAraL~~~p~lLlLDEP-----------T~gLD~~~~~~i~~ll~~l~---~~~g~tviivtHdl~ 529 (608)
T 3j16_B 473 LQRVAIVLALGIPADIYLIDEP-----------SAYLDSEQRIICSKVIRRFI---LHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHHHHHTTSCCSEEEECCT-----------TTTCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECC-----------CCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 3466777788889999999993 45566666666667766642 112445666777543
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.23 E-value=0.0024 Score=61.42 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
-+.|.|+|||||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987664
No 256
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.21 E-value=0.0035 Score=60.53 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
-+.|.|++||||||+++.+|+.+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998887543
No 257
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.20 E-value=0.0034 Score=60.11 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is 257 (680)
+.|.|++||||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999988 99887654
No 258
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.19 E-value=0.0083 Score=74.78 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCc
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILD 345 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD 345 (680)
++.|-.+++|.-..|.|+++||.- ++.+...+..+.+.+..+- .+..+|..|++...+.
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~t-----------SaLD~~te~~i~~~l~~~~-----~~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEAT-----------SALDAESEGIVQQALDKAA-----KGRTTIIIAHRLSTIR 617 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTT-----------TTSCTTTHHHHHHHHHHHH-----TTSEEEEECSCTTTTT
T ss_pred HHHHHHHHHHHccCCCEEEEeccc-----------ccCCHHHHHHHHHHHHHHh-----CCCEEEEEcccHHHHH
Confidence 455777888888899999999963 3334444555555554432 1335566678877653
No 259
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.18 E-value=0.0025 Score=63.19 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
-++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998765443
No 260
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.17 E-value=0.0061 Score=69.40 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+-|-.+.+|....|.|+++||. +++-+...+..+.+++..+.. +..+|..|++++.
T Consensus 483 ~Qrv~lAral~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~ 538 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEA-----------TSALDLESESIIQEALDVLSK-----DRTTLIVAHRLST 538 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGG
T ss_pred HHHHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHH
Confidence 3455667777788999999995 455666677777777766531 2355667887654
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.15 E-value=0.0048 Score=60.51 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.++-+.|+||+|+|||+|++++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999865
No 262
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.10 E-value=0.0032 Score=60.64 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
|.-+.|+|++||||||+++.+++. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456889999999999999999998 8777643
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.0037 Score=62.77 Aligned_cols=31 Identities=35% Similarity=0.614 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
|.-+.|.||||+||||+++.++..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999998876543
No 264
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.09 E-value=0.0036 Score=63.02 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
|.-+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999977654
No 265
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.01 E-value=0.005 Score=62.15 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCe--------EEeechhhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPF--------LSMSGSDFM 262 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~--------i~is~s~~~ 262 (680)
.|.-|.|.|++||||||+|+.++..++.++ ..++..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 355688999999999999999999998773 356666654
No 266
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.00 E-value=0.016 Score=69.53 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~ 247 (680)
.-++|+||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999954
No 267
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.99 E-value=0.013 Score=66.58 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
-|-.+.+|....|.|+++||. +++-+...+..+.+++..+.. +..+|.+|++++.
T Consensus 487 qrl~iAral~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~ 541 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEA-----------TSALDTESERAIQAALDELQK-----NRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETT-----------TSSCCHHHHHHHHHHHHHHHT-----TSEEEEECSCGGG
T ss_pred HHHHHHHHHHhCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHhC-----CCEEEEEeccHHH
Confidence 344566666678999999995 456677777777777766531 3456667787654
No 268
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.011 Score=67.60 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 274 RSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 274 r~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
|-.+..|....|.+|++||- +++.+......+..++..+.. .+..||.+|++.+.+
T Consensus 229 rv~iAraL~~~p~llllDEP-----------ts~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEP-----------SSYLDVKQRLNAAQIIRSLLA----PTKYVICVEHDLSVL 284 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECT-----------TTTCCHHHHHHHHHHHHGGGT----TTCEEEEECSCHHHH
T ss_pred HHHHHHHHHhCCCEEEEECc-----------ccCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH
Confidence 44566677788999999994 445566666667777766632 245677778865543
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.97 E-value=0.012 Score=64.72 Aligned_cols=38 Identities=26% Similarity=0.130 Sum_probs=29.1
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
|+....-++|.|+||+|||+||..+|..+ |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 44444458999999999999999888755 667777764
No 270
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.97 E-value=0.0023 Score=62.13 Aligned_cols=29 Identities=17% Similarity=-0.009 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPF 253 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~ 253 (680)
+.-++|+|+|||||||+++.++..++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999875543
No 271
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.96 E-value=0.0034 Score=61.15 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
-+.|+|++||||||+++.++..+|++++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 477999999999999999999889887654
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.95 E-value=0.011 Score=65.95 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=29.1
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
|+....-++|.|+||+|||+||..+|..+ |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 34444458899999999999999998754 557777765
No 273
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.0092 Score=67.33 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
+.|-.+..|....|.||++||- +++.+......+..++..+. . +..||.+|++.+.+
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEP-----------ts~LD~~~~~~l~~~l~~l~----~-g~tii~vsHdl~~~ 200 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQP-----------SSYLDVRERMNMAKAIRELL----K-NKYVIVVDHDLIVL 200 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHC----T-TSEEEEECSCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHh----C-CCEEEEEEeChHHH
Confidence 3455677778889999999994 44556666666777777663 2 45677778876543
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.91 E-value=0.0036 Score=63.64 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=28.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
..+.|.|++|+||||+++.+|+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5689999999999999999999999887654
No 275
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.89 E-value=0.015 Score=65.22 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCChHHHHHHH--HHHhc--CCCeEEeechhhhh------hhccCc-------------------------
Q 005738 225 PKGALLVGPPGTGKTLLAKA--TAGES--GVPFLSMSGSDFME------MFVGVG------------------------- 269 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAra--lA~e~--~~~~i~is~s~~~~------~~~g~~------------------------- 269 (680)
..-++|.||+|+|||||++. +++.. +-.-+++++.+... ..+|..
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l 118 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVV 118 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhh
Confidence 34589999999999999999 45533 34455555432100 000000
Q ss_pred -----hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 270 -----PSRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 270 -----~~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
...............|.+|+|||.-++.+. .+.+......+..++..+.. .++.||.+|++.+.+
T Consensus 119 ~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~------~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 119 GGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ------YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT------TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh------cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 111223333444567899999998765321 12233445566677766632 356777788877664
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.86 E-value=0.0074 Score=58.71 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
..++-++|+||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456789999999999999999999874
No 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.85 E-value=0.023 Score=68.38 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 005738 195 AGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 195 ~G~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e 248 (680)
+|.++.+++|.+.+.... ..+-+.|+||+|.|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899988888888765321 1356889999999999999999863
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.84 E-value=0.0046 Score=59.76 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVP 252 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~ 252 (680)
+.-++|.|+|||||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3458899999999999999999988763
No 279
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.83 E-value=0.0029 Score=61.47 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
|.-++|+|+|||||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56689999999999999999999764
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.83 E-value=0.0062 Score=59.50 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
+.-+.|.||+|+|||||++.+++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999999874
No 281
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.81 E-value=0.021 Score=64.34 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
+.|-.+..|....|.+|++||- +++.+......+.++|..+.. .+..||.+|++.+.
T Consensus 164 kQRv~iAraL~~~P~lLlLDEP-----------Ts~LD~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEP-----------SSYLDIRQRLNAARAIRRLSE----EGKSVLVVEHDLAV 220 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHH
Confidence 4456677778889999999993 445566666667777766532 24567777776543
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.81 E-value=0.0044 Score=65.67 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
++-++|.||+|||||+|+..||+.++.+++..+.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 346899999999999999999999998888776543
No 283
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.80 E-value=0.0093 Score=56.87 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
+.-++|.|+||+||||+++.++..+ +.++..+++..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4568899999999999999999876 445555654443
No 284
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.79 E-value=0.0098 Score=64.87 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.|.-++|+|+||+||||+|+.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 35568899999999999999999998766544
No 285
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.78 E-value=0.0071 Score=67.84 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC--CCeEEeechh-hhh---h--------hccCchhHHHHHHHHHHhcCCeEEEE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG--VPFLSMSGSD-FME---M--------FVGVGPSRVRSLFQEARQCAPSIVFI 290 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~--~~~i~is~s~-~~~---~--------~~g~~~~~vr~lf~~A~~~~P~ILfI 290 (680)
..+++|.||+|+||||+++++++... ...+.+.... +.- . ..+...-.+.+++..+.++.|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45799999999999999999998773 2345554332 110 0 00112234566777777889999999
Q ss_pred cCc
Q 005738 291 DEI 293 (680)
Q Consensus 291 DEi 293 (680)
+|+
T Consensus 340 gEi 342 (511)
T 2oap_1 340 GEV 342 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 997
No 286
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.77 E-value=0.0093 Score=68.02 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+-|-.+.+|....|.|+++||. +++-+...++.+.+.+..+. .+..+|..|++++
T Consensus 485 rQrv~lARal~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~-----~~~tvi~itH~l~ 539 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDC-----------TSSVDPITEKRILDGLKRYT-----KGCTTFIITQKIP 539 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESC-----------CTTSCHHHHHHHHHHHHHHS-----TTCEEEEEESCHH
T ss_pred HHHHHHHHHHHcCCCEEEEECC-----------cccCCHHHHHHHHHHHHHhC-----CCCEEEEEecChH
Confidence 4456677777788999999995 45667777777777776652 2456667778654
No 287
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.76 E-value=0.0053 Score=64.31 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
.|+-++|+||+|+|||+||..+|...+.++++.+.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 35678899999999999999999999888877765443
No 288
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.74 E-value=0.018 Score=65.95 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
.|-.+..|....|.+|++||- +++.+......+.+++..+. ...+..||.+|+..+
T Consensus 478 QRv~iAraL~~~p~lLlLDEP-----------t~~LD~~~~~~l~~~l~~l~---~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEP-----------SAYLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVL 533 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHH
T ss_pred HHHHHHHHHHhCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 355666777788999999993 45566666777777777652 122345666777544
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.74 E-value=0.008 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
+.-+.|+||+|+||||+++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998764
No 290
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.73 E-value=0.0047 Score=60.07 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=25.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-CCCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES-GVPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~-~~~~i~i 256 (680)
.-+.|.|+||+||||+++.+++.+ +++++..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 347799999999999999999987 5555443
No 291
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.0055 Score=60.01 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
|.-+.|+|++|||||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45689999999999999999999999887654
No 292
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.71 E-value=0.0038 Score=64.37 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-GVPFL 254 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-~~~~i 254 (680)
|.-++|.|+||+||||+++.++... +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999864 55444
No 293
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.69 E-value=0.0069 Score=59.26 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhh
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFM 262 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~ 262 (680)
.+.-++|.|+||+||||+++.+++.+ |.+++.+++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34568899999999999999999865 4667777765543
No 294
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.66 E-value=0.021 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
+.+++.+|+|+|||+++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999998877764
No 295
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.65 E-value=0.0067 Score=59.45 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
|.-+.|.|++||||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 78776543
No 296
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.61 E-value=0.019 Score=64.77 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+.|-.+..+....|.+|++||- +++.+......+.+++..+. ...+..||.+|+..+
T Consensus 407 ~qrv~lAraL~~~p~lLlLDEP-----------t~~LD~~~~~~i~~~l~~l~---~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 407 LQRVAIAATLLRDADIYLLDEP-----------SAYLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVL 463 (538)
T ss_dssp HHHHHHHHHHTSCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHHHHHhCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 3456677778888999999993 45566666777777776652 112345666677544
No 297
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.60 E-value=0.0069 Score=61.28 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=26.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
.-+.|.||+||||||+++.+|+.+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 35789999999999999999999998765
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.59 E-value=0.007 Score=58.37 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+.-+.|.||+|+||||+++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999876
No 299
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.57 E-value=0.031 Score=59.31 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=29.0
Q ss_pred cCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 221 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 221 g~~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
|+....-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444458999999999999999998764 667666654
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.54 E-value=0.0078 Score=57.42 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+-+.|+||+|+|||||++.+++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999865
No 301
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.54 E-value=0.01 Score=73.93 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
++.|-.+++|.-+.|.||++||. +++-+.+.++.+.+.+..+ ..+..+|..++|.+.+
T Consensus 1222 QrQriaiARAllr~~~ILiLDEa-----------TSaLD~~tE~~Iq~~l~~~-----~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEA-----------TSALDTESEKVVQEALDRA-----REGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESC-----------CCSTTSHHHHHHHHHHTTT-----SSSSEEEEECSSSSTT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCc-----------cccCCHHHHHHHHHHHHHH-----cCCCEEEEeccCHHHH
Confidence 34466677777788999999996 4456677777777766542 2345677778887754
No 302
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0091 Score=59.51 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.+.-+.|.|++||||||+++.+++.+|++++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568899999999999999999999987754
No 303
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.41 E-value=0.03 Score=62.82 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFMEM 264 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~~ 264 (680)
|.-|+|+|.||+||||+|+.++..+ +.+...++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 4568999999999999999999987 455556676665544
No 304
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.40 E-value=0.007 Score=62.39 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDF 261 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~ 261 (680)
|.-|.|+|++||||||+|+.++ .+|.+++ ++.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 4568999999999999999999 6787665 44444
No 305
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.39 E-value=0.017 Score=65.96 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
-|-.+.+|....|.|+++||- +++-+...++.+.+++..+.. +..+|.+|++++.
T Consensus 490 qrv~iAral~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~ 544 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEA-----------TSALDAENEYLVQEALDRLMD-----GRTVLVIAHRLST 544 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECC-----------CSSCCHHHHHHHHHHHHHHHT-----TSEEEEECCCHHH
T ss_pred HHHHHHHHHHcCCCEEEEECc-----------ccCCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHH
Confidence 344566666678999999995 456677777777777776532 2456667786543
No 306
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.38 E-value=0.061 Score=63.48 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+.|+||+|+||||+.|.++.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999874
No 307
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.35 E-value=0.02 Score=66.25 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCC---eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAP---SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P---~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+-|-.+..|....| .+|++||- +++.+......+.+++..+.. .+..||.+|++.+
T Consensus 549 ~qrv~iAraL~~~p~~p~llllDEP-----------t~~LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 549 AQRVKLAAELHRRSNGRTLYILDEP-----------TTGLHVDDIARLLDVLHRLVD----NGDTVLVIEHNLD 607 (670)
T ss_dssp HHHHHHHHHHHSCCCSCEEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHHHHHHHhhCCCCCcEEEEeCC-----------CCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 34556667765554 69999994 456666667777777776642 2556777788654
No 308
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.35 E-value=0.13 Score=57.16 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+.-++|.||+|+||||+++.|++.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999865
No 309
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.34 E-value=0.0085 Score=63.58 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=28.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSG 258 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~ 258 (680)
+-++|.||+|+|||+||+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999876665554
No 310
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.32 E-value=0.0097 Score=62.44 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=29.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
+-++|.||+|+|||+|+..+|...+..+++.+.-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 45789999999999999999999987776665543
No 311
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.30 E-value=0.04 Score=59.41 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCC--eEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 274 RSLFQEARQCAP--SIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 274 r~lf~~A~~~~P--~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+-.+..+....| .||++||.++ +.+......+..+|..+. .+..||.+|+.++
T Consensus 303 rl~lA~~l~~~~~~~~LlLDEpt~-----------~LD~~~~~~l~~~L~~l~-----~~~~vi~itH~~~ 357 (415)
T 4aby_A 303 RVMLAVSTVLGADTPSVVFDEVDA-----------GIGGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQ 357 (415)
T ss_dssp HHHHHHHHHHCCSSSEEEESSTTT-----------TCCHHHHHHHHHHHHHHT-----TTSEEEEECSCHH
T ss_pred HHHHHHHHHhCCCCCEEEEECCCC-----------CCCHHHHHHHHHHHHHHh-----CCCEEEEEeCcHH
Confidence 444555555678 9999999743 456666677777776653 1445666777643
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.29 E-value=0.027 Score=54.59 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGS 259 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s 259 (680)
+.-+.|.||+|+||||+++.+++.+ +.+++..+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 4458899999999999999999865 6666655443
No 313
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.26 E-value=0.038 Score=63.20 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDI 343 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~ 343 (680)
.|-.+..|....|.+|++||- +++.+......+.++|..+.. .+..||.+|++.+.
T Consensus 235 QRvaIAraL~~~P~lLlLDEP-----------Ts~LD~~~~~~l~~~L~~l~~----~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEP-----------SSYLDIRQRLKVARVIRRLAN----EGKAVLVVEHDLAV 290 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECC-----------cccCCHHHHHHHHHHHHHHHh----cCCEEEEEecChHH
Confidence 455677777889999999994 445566666677777776632 24567777886543
No 314
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.23 E-value=0.02 Score=65.62 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
+-++++||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999988877654
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.23 E-value=0.0091 Score=57.04 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeechhhh
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGSDFM 262 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s~~~ 262 (680)
-+.|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4689999999999999999985533 2445555543
No 316
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.22 E-value=0.025 Score=67.87 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 273 VRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 273 vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
.|-.+..|....|.+|++||- +++.+......+..+|.. .+..||.+|++.+.+
T Consensus 555 QRvaLArAL~~~P~lLLLDEP-----------Ts~LD~~~~~~l~~~L~~-------~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 555 MKLALARAVLRNADILLLDEP-----------TNHLDTVNVAWLVNYLNT-------CGITSITISHDSVFL 608 (986)
T ss_dssp HHHHHHHHHHTTCSEEEEEST-----------TTTCCHHHHHHHHHHHHH-------SCSEEEEECSCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECC-----------ccCCCHHHHHHHHHHHHh-------CCCEEEEEECCHHHH
Confidence 455666677788999999994 445566666667777655 145666778765543
No 317
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.18 E-value=0.0094 Score=58.52 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFLSMSG 258 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i~is~ 258 (680)
.++++|.||+|+|||+||..++...+ +++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46799999999999999999998866 6555443
No 318
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.17 E-value=0.0099 Score=58.73 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=21.7
Q ss_pred hhhcCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005738 218 EELGAKIPKG--ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 218 ~~~g~~~p~g--vLL~GppGtGKT~LAralA~e~ 249 (680)
..+.+.+++| +.|.||+|+|||||++.+++..
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3344445544 8899999999999999999976
No 319
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.14 E-value=0.0089 Score=58.10 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
+.-+.|.||+|+|||||++.+++.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999877
No 320
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.13 E-value=0.012 Score=57.47 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=27.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
.-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999973
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.11 E-value=0.011 Score=56.49 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 322
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.09 E-value=0.086 Score=52.26 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATA 246 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA 246 (680)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 568999999999998766554
No 323
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.04 E-value=0.013 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+||||+++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 447899999999999999999975
No 324
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.99 E-value=0.027 Score=69.99 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
++.|-.+.+|....|.||++||. +++.+.+.+..+.+.+..+. .+..+|..|++.+.+
T Consensus 531 q~QriaiARal~~~p~iliLDEp-----------ts~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEA-----------TSALDTESEAVVQAALDKAR-----EGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEST-----------TCSSCHHHHHHHHHHHHHHH-----TTSEEEEECSCHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECC-----------CCCCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 34466677777788999999995 44556666777777766542 234666677875543
No 325
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.86 E-value=0.041 Score=60.33 Aligned_cols=35 Identities=31% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
.|..++++|+||+||||++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35679999999999999999999865 455555554
No 326
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.80 E-value=0.02 Score=55.93 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=40.8
Q ss_pred CeEEEEcCCCChHH-HHHHHHHHh--cCCCeEEeech---hhhhhh---ccC-----chhHHHHHHHHHHhcCCeEEEEc
Q 005738 226 KGALLVGPPGTGKT-LLAKATAGE--SGVPFLSMSGS---DFMEMF---VGV-----GPSRVRSLFQEARQCAPSIVFID 291 (680)
Q Consensus 226 ~gvLL~GppGtGKT-~LAralA~e--~~~~~i~is~s---~~~~~~---~g~-----~~~~vr~lf~~A~~~~P~ILfID 291 (680)
+-.++|||.|+||| .|.+++.+. .+..++.+... .+.+.. .|. ......++++..+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 34678999999999 899988764 36777777643 211110 010 0011122333322 35799999
Q ss_pred Ccchh
Q 005738 292 EIDAI 296 (680)
Q Consensus 292 EiD~L 296 (680)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99776
No 327
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.79 E-value=0.025 Score=60.48 Aligned_cols=69 Identities=19% Similarity=0.375 Sum_probs=45.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC--CeEEeech-hhh-----hh--hcc-------C-chhHHHHHHHHHHhcCCe
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGV--PFLSMSGS-DFM-----EM--FVG-------V-GPSRVRSLFQEARQCAPS 286 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~--~~i~is~s-~~~-----~~--~~g-------~-~~~~vr~lf~~A~~~~P~ 286 (680)
...++|+||+|+|||||++++++.... ..+.+... ++. .. ++. . ....++..+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 356899999999999999999997632 23444321 110 00 111 0 122456777788888999
Q ss_pred EEEEcCc
Q 005738 287 IVFIDEI 293 (680)
Q Consensus 287 ILfIDEi 293 (680)
.++++|+
T Consensus 255 ~~l~~e~ 261 (361)
T 2gza_A 255 RILLAEL 261 (361)
T ss_dssp EEEESCC
T ss_pred EEEEcCc
Confidence 9999997
No 328
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.78 E-value=0.078 Score=62.21 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
..-+.|+||+|+||||+.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356889999999999999999873
No 329
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.78 E-value=0.12 Score=49.51 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||+.+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998633
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.78 E-value=0.015 Score=58.20 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=23.8
Q ss_pred cCCCCCe--EEEEcCCCChHHHHHHHHHHhcCCC
Q 005738 221 GAKIPKG--ALLVGPPGTGKTLLAKATAGESGVP 252 (680)
Q Consensus 221 g~~~p~g--vLL~GppGtGKT~LAralA~e~~~~ 252 (680)
.+..++| +-|.||+|+||||+++.+++.+|..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3344444 6799999999999999999987654
No 331
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.77 E-value=0.066 Score=56.47 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345668899999999999999999865
No 332
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.71 E-value=0.047 Score=53.08 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=39.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh-------hhhhccCc-----hhHHHHHHHHHHhcCCeEEEEc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF-------MEMFVGVG-----PSRVRSLFQEARQCAPSIVFID 291 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~-------~~~~~g~~-----~~~vr~lf~~A~~~~P~ILfID 291 (680)
-.+++||+|+|||+.+-.++..+ +..++.+...-. +....|.. .....++++.+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 46789999999999888887765 666555532100 00011211 0111245544432 35799999
Q ss_pred Ccchh
Q 005738 292 EIDAI 296 (680)
Q Consensus 292 EiD~L 296 (680)
|+.-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 98776
No 333
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.70 E-value=0.016 Score=56.28 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
++-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999865
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.68 E-value=0.062 Score=56.45 Aligned_cols=36 Identities=31% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
..++-++++||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445678999999999999999999865 555555543
No 335
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.64 E-value=0.031 Score=69.41 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCC
Q 005738 271 SRVRSLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDIL 344 (680)
Q Consensus 271 ~~vr~lf~~A~~~~P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~L 344 (680)
++.|-.+.+|....|.||++||. +++.+...+..+.+.+.... .+..||..|++.+.+
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEp-----------Ts~lD~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEA-----------TSALDTESEKVVQEALDKAR-----EGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESC-----------SSSCCHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGG
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHH
Confidence 34466777777788999999995 45667777777887776642 234566677776653
No 336
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.63 E-value=0.066 Score=59.79 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
.|+.|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46679999999999999999999655 566666655
No 337
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.63 E-value=0.21 Score=51.79 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=31.8
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcC----CCCCeEEEEcCCCChHHHHHHHHHHh
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGA----KIPKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~----~~p~gvLL~GppGtGKT~LAralA~e 248 (680)
.+|+++.=.+...+.|.+. .+..+..++...+ .-.+.+++.+|+|+|||+.+-..+-+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4677774444455444432 1222222221111 11368999999999999976654443
No 338
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.58 E-value=0.024 Score=64.93 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF 261 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~ 261 (680)
+.-|+|+|+||+||||+|++++..+ |.+++.+++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4568999999999999999999998 999998876544
No 339
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.55 E-value=0.024 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.||.|+|||||+|++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999987
No 340
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.54 E-value=0.05 Score=64.03 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999977777554
No 341
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.54 E-value=0.037 Score=60.37 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=40.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC---CeEEeech-hhh-h----hhccC-chhHHHHHHHHHHhcCCeEEEEcCc
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGV---PFLSMSGS-DFM-E----MFVGV-GPSRVRSLFQEARQCAPSIVFIDEI 293 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~---~~i~is~s-~~~-~----~~~g~-~~~~vr~lf~~A~~~~P~ILfIDEi 293 (680)
-++|.||+|+||||+++++++.... .++.+... ++. . ..+.. ..-.....+..+....|.++++.|+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 3689999999999999999997742 23332211 110 0 00000 0112334555666678999999996
No 342
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.54 E-value=0.023 Score=54.82 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEeechh
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSMSGSD 260 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~is~s~ 260 (680)
+|++|++|||||++|..++.. +.|.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887654
No 343
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.53 E-value=0.016 Score=58.03 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCeEEe
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPFLSM 256 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~i~i 256 (680)
+-|.||||+||||+|+.++..++++.++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 56899999999999999999999887644
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.50 E-value=0.018 Score=62.44 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=28.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSG 258 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~ 258 (680)
+-++|.||+|+|||+|+..+|...+..+++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999999877765554
No 345
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.46 E-value=0.07 Score=55.33 Aligned_cols=70 Identities=29% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechh--------h---hhh-----hc---cCch-hHHHHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSD--------F---MEM-----FV---GVGP-SRVRSLFQEA 280 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~--------~---~~~-----~~---g~~~-~~vr~lf~~A 280 (680)
.++-+.++|++|+||||+++.+|..+ +..+..+++.- + .+. +. +... ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999865 44555444310 1 000 00 0112 2235667777
Q ss_pred HhcCCeEEEEcCc
Q 005738 281 RQCAPSIVFIDEI 293 (680)
Q Consensus 281 ~~~~P~ILfIDEi 293 (680)
+...+.+|+||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 6567899999995
No 346
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.088 Score=57.70 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----CCCeEEeechhhhh----------h------hcc---Cchh-HHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSMSGSDFME----------M------FVG---VGPS-RVRSLFQ 278 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~----~~~~i~is~s~~~~----------~------~~g---~~~~-~vr~lf~ 278 (680)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+.. . +.. .... .++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346789999999999999999998654 66666666542110 0 010 1112 2356677
Q ss_pred HHHhcCCeEEEEcCc
Q 005738 279 EARQCAPSIVFIDEI 293 (680)
Q Consensus 279 ~A~~~~P~ILfIDEi 293 (680)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555689999874
No 347
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.35 E-value=0.02 Score=56.66 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=15.2
Q ss_pred CeEEEEcCCCChHHHHHHHHH-Hhc
Q 005738 226 KGALLVGPPGTGKTLLAKATA-GES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA-~e~ 249 (680)
.-+.|.||+|+||||+++.++ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 347899999999999999999 765
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.27 E-value=0.026 Score=54.99 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
.-+.|.||+|+|||||++++++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3477999999999999999999763
No 349
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.22 E-value=0.023 Score=58.86 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
..|.-+.|.||+|+|||||++.+++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455688999999999999999998774
No 350
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.20 E-value=0.06 Score=55.96 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=43.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh-----------hhh-----hcc---Cch-hHHHHHHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF-----------MEM-----FVG---VGP-SRVRSLFQEAR 281 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~-----------~~~-----~~g---~~~-~~vr~lf~~A~ 281 (680)
+.-+++.|++|+||||++..+|..+ +..+..+++.-+ ... +.+ ... ..++..++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5668889999999999999999765 556655554311 000 001 111 22345666666
Q ss_pred hcCCeEEEEcCc
Q 005738 282 QCAPSIVFIDEI 293 (680)
Q Consensus 282 ~~~P~ILfIDEi 293 (680)
.....+++||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 556689999874
No 351
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.18 E-value=0.12 Score=50.45 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=30.3
Q ss_pred CCcccccccccch-HHHHHHHHHHHHhcChhhHhhhc---CCCCCeEEEEcCCCChHHHHHH
Q 005738 186 KDKVFFKDVAGCD-EAKQEIMEFVHFLKNPKKYEELG---AKIPKGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 186 ~~~~~f~dv~G~~-~~k~~L~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~LAr 243 (680)
.+..+|.|..+.. +..+.|.+. .+..+..++... +...+.+++.+|+|+|||+.+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4556788854544 333333321 133333322211 1123679999999999998543
No 352
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.16 E-value=0.14 Score=61.88 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATA 246 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA 246 (680)
.-++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568899999999999999993
No 353
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.15 E-value=0.04 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+.-+.|.||+|+||||+++.+|+.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999999875
No 354
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.12 E-value=0.065 Score=61.63 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCeEEeech
Q 005738 227 GALLVGPPGTGKTLLAKATAGES---GVPFLSMSGS 259 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s 259 (680)
-.||.||||||||+.+-.+..++ +.+++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 36899999999997554444332 5566655543
No 355
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.10 E-value=0.2 Score=48.66 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=30.3
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhc---CCCCCeEEEEcCCCChHHHH
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELG---AKIPKGALLVGPPGTGKTLL 241 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~L 241 (680)
...+|+++.=.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 345788885445555555432 133333222211 11235799999999999986
No 356
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.07 E-value=0.033 Score=58.26 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=24.8
Q ss_pred hcCCCCC--eEEEEcCCCChHHHHHHHHHHhcC
Q 005738 220 LGAKIPK--GALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 220 ~g~~~p~--gvLL~GppGtGKT~LAralA~e~~ 250 (680)
+...+|+ -+.|+||+|+|||||++.|++...
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 3344444 488999999999999999999873
No 357
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.00 E-value=0.073 Score=60.87 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 222 AKIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 222 ~~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+.+|. +.|.||+|+|||||++++++..
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSCC
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCCC
Confidence 44555 8899999999999999999863
No 358
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.98 E-value=0.028 Score=55.99 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEE
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLS 255 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~ 255 (680)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999864
No 359
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.93 E-value=0.12 Score=57.15 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG---VPFLSMSGSDFM 262 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~---~~~i~is~s~~~ 262 (680)
|.-|+|+|.||+||||+++.++..++ .+...++..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 45689999999999999999998864 455555544443
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.91 E-value=0.014 Score=56.52 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 005738 228 ALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~ 250 (680)
+.|.|++|+||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 361
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.74 E-value=0.038 Score=52.98 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPF 253 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~ 253 (680)
+|+||.|+||+|||++|.++... |..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 68999999999999999999874 4433
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.71 E-value=0.2 Score=54.77 Aligned_cols=70 Identities=24% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhh-------hhh---------hc-c--CchhHH-HHHHHHH
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDF-------MEM---------FV-G--VGPSRV-RSLFQEA 280 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~-------~~~---------~~-g--~~~~~v-r~lf~~A 280 (680)
.|..++++|++|+||||++..+|..+ +..+..+++.-+ +.. +. + .....+ +..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999865 445555543211 000 11 1 111222 5566666
Q ss_pred HhcCCeEEEEcCc
Q 005738 281 RQCAPSIVFIDEI 293 (680)
Q Consensus 281 ~~~~P~ILfIDEi 293 (680)
+....++++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5555679999854
No 363
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.65 E-value=0.2 Score=49.62 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.5
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||+.+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 579999999999998643
No 364
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.56 E-value=0.027 Score=58.34 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=24.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC---CCeEEeechhh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG---VPFLSMSGSDF 261 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~---~~~i~is~s~~ 261 (680)
.-|.|+||+|+||||+|+.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4578999999999999999998765 44555555444
No 365
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.56 E-value=0.054 Score=57.88 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 223 KIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+.-+.|.||+|+||||+++.+|+.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 344568899999999999999999875
No 366
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.50 E-value=0.19 Score=58.09 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCe--EEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCC
Q 005738 272 RVRSLFQEARQCAPS--IVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPD 342 (680)
Q Consensus 272 ~vr~lf~~A~~~~P~--ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~ 342 (680)
+.|-.+..|....|. +|++||- +++.+......+..++..+.. .+..||.+|+..+
T Consensus 208 ~QRv~iArAL~~~p~~~lLlLDEP-----------tsgLD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 208 AQRIRLATQIGSRLTGVLYVLDEP-----------SIGLHQRDNDRLIATLKSMRD----LGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHHHHHHHTCCCSCEEEEECT-----------TTTCCGGGHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEECC-----------ccCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHH
Confidence 345566777777777 9999994 445566666667777766632 2456777788654
No 367
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.35 E-value=0.047 Score=61.98 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG----VPFLSMSGSDF 261 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~----~~~i~is~s~~ 261 (680)
+.-|+|+|+||+||||+|++++..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 45688999999999999999999875 78888876544
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.32 E-value=0.042 Score=57.24 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
.-+.|.||+|+|||||++.+++.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577999999999999999999765
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.30 E-value=0.049 Score=54.27 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=25.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCeEEe
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG--VPFLSM 256 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~--~~~i~i 256 (680)
.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4477899999999999999999885 455443
No 370
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.23 E-value=0.11 Score=51.35 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=30.5
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhc---CCCCCeEEEEcCCCChHHHHHH
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELG---AKIPKGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~LAr 243 (680)
+..+|+++.=.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||+.+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 456799984344444444321 133333332211 1113579999999999997643
No 371
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.23 E-value=0.72 Score=44.53 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=32.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcChhhHhhhcC---CCCCeEEEEcCCCChHHHHHHHHHHh
Q 005738 189 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGA---KIPKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 189 ~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~LAralA~e 248 (680)
.+|+|+.=.++..+.|.+. .+..+..++...+ .-.+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688875445555555431 1333333322111 11256999999999999876655443
No 372
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.02 E-value=0.058 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
...-+.|.|++|+|||||++.+.+.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998864
No 373
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.092 Score=49.53 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHhcChhhHhhhcCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 197 CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 197 ~~~~k~~L~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.....+.+.+++..+.... .....-+++.|++|+|||+|+.++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~~------~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG------GSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4445555555544332211 1334579999999999999999998754
No 374
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.93 E-value=0.21 Score=57.97 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCChHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLA 242 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LA 242 (680)
.+.++++||+|+|||+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 578999999999999887
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.88 E-value=0.058 Score=56.49 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+.-+.|.||+|+|||||++.|++.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 3447799999999999999999976
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.86 E-value=0.1 Score=54.81 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
.|.-+.|.||+||||||+++.+++.++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999998764
No 377
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.78 E-value=0.066 Score=59.12 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-++|+||||+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 47899999999999999987654
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.77 E-value=0.14 Score=54.24 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMS 257 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is 257 (680)
+.-+.|+|+||+|||+++..++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468899999999999999998765 44444333
No 379
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.76 E-value=0.04 Score=54.23 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+.|.||+|+|||||++++++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999975
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.64 E-value=0.067 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+.-+.|.||+|+||||+++.+|+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999865
No 381
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.62 E-value=0.3 Score=51.69 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=30.8
Q ss_pred CcccccccccchHHHHHHHHHHHHhcChhhHhhhcCC---CCCeEEEEcCCCChHHHHHHHHH
Q 005738 187 DKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAK---IPKGALLVGPPGTGKTLLAKATA 246 (680)
Q Consensus 187 ~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~~---~p~gvLL~GppGtGKT~LAralA 246 (680)
...+|+|+.=.+...+.|.+. .+..+..++...+. ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345788885445455444431 12222222211110 12569999999999998654433
No 382
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.61 E-value=0.13 Score=50.85 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=22.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is 257 (680)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4589999999999888877654 66665554
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.57 E-value=0.07 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005738 227 GALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~ 250 (680)
-.+|+||+|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999998764
No 384
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.57 E-value=0.51 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLAKAT 245 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAral 245 (680)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999865433
No 385
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.52 E-value=0.28 Score=48.13 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=29.1
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhc---CCCCCeEEEEcCCCChHHHHH
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELG---AKIPKGALLVGPPGTGKTLLA 242 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~LA 242 (680)
..+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688875444455444331 122232222211 111367999999999999854
No 386
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.49 E-value=0.37 Score=49.35 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=24.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEeec
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMSG 258 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is~ 258 (680)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 578999999999999777666665666555543
No 387
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.47 E-value=0.07 Score=53.10 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
|+-+.|.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999983
No 388
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.37 E-value=0.038 Score=55.85 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES-GVPFL 254 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~-~~~~i 254 (680)
+.-|.|.|++|+||||+++.++..+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4558899999999999999999998 54443
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.37 E-value=0.047 Score=55.62 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005738 227 GALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~ 250 (680)
-+.|.||+|+|||||++++++...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998653
No 390
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.35 E-value=0.34 Score=48.40 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.5
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||+.+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 679999999999998643
No 391
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.33 E-value=0.14 Score=50.44 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=26.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeEEee
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFLSMS 257 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i~is 257 (680)
-.|-|+|..||||||+++.++. +|+|++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3578999999999999999998 898886543
No 392
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.22 E-value=0.19 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..|+|.|.||+|||+|+.++.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999998743
No 393
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.22 E-value=0.064 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
-+.|.||+|+|||||++.+++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999986
No 394
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.17 E-value=0.51 Score=53.22 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=31.8
Q ss_pred CCCcccccccccchHHHHHHHHHHHH--hcChhhHhhhcC-----CCCCeEEEEcCCCChHHHH
Q 005738 185 AKDKVFFKDVAGCDEAKQEIMEFVHF--LKNPKKYEELGA-----KIPKGALLVGPPGTGKTLL 241 (680)
Q Consensus 185 ~~~~~~f~dv~G~~~~k~~L~e~v~~--l~~~~~~~~~g~-----~~p~gvLL~GppGtGKT~L 241 (680)
....++|+++........++.+.+.. +..+..++...+ ...+.+++.+|+|+|||+.
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34566788776333334444444443 222322222111 1246799999999999984
No 395
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.06 E-value=0.09 Score=50.10 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=25.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMS 257 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is 257 (680)
+-+.|.|++|+||||++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999865 45544443
No 396
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.02 E-value=0.28 Score=56.83 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=18.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHH
Q 005738 223 KIPKGALLVGPPGTGKTLLAKA 244 (680)
Q Consensus 223 ~~p~gvLL~GppGtGKT~LAra 244 (680)
.-.+.++++||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3357899999999999998743
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.01 E-value=0.15 Score=46.47 Aligned_cols=21 Identities=48% Similarity=0.844 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005738 227 GALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~ 247 (680)
-++|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999999965
No 398
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.98 E-value=0.31 Score=54.94 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeechhhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSGSDFME 263 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~s~~~~ 263 (680)
+.-++|+|++|+||||+|+.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568899999999999999999876 45677777655443
No 399
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.97 E-value=0.3 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||||+|||||.+++++..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999754
No 400
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.95 E-value=0.065 Score=60.55 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC----CCeEEeechhhh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG----VPFLSMSGSDFM 262 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~----~~~i~is~s~~~ 262 (680)
...+.|.|++||||||++++|++.++ ..+..+++.++.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 34588999999999999999999874 345556665553
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.94 E-value=0.13 Score=50.79 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=25.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEee
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMS 257 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is 257 (680)
.-+.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 346789999999999999999876 45665443
No 402
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.89 E-value=0.29 Score=46.75 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.4
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997544
No 403
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.89 E-value=0.31 Score=56.40 Aligned_cols=33 Identities=39% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH-HHhc--CCCeEEee
Q 005738 225 PKGALLVGPPGTGKTLLAKAT-AGES--GVPFLSMS 257 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAral-A~e~--~~~~i~is 257 (680)
.+.+++++|+|+|||+.+-.. ...+ +...+++.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 367999999999999987433 2222 44455444
No 404
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.85 E-value=0.077 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 405
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.84 E-value=0.081 Score=56.32 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVP 252 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~ 252 (680)
.-+.|.||+|+|||||++.+++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999987543
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.80 E-value=0.065 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005738 227 GALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~ 250 (680)
-+.|.||+|+|||||++.+++...
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 378999999999999999998653
No 407
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.68 E-value=0.28 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
+-.++.|+||||||++.+.++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999888753
No 408
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.57 E-value=0.095 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.|++|+|||+|++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 409
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.54 E-value=0.44 Score=50.95 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 227 GALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
++++..|+|+|||+.+-+++... +.+++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 78999999999999888876654 556555544
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.53 E-value=0.064 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+-+.|.|++|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999876
No 411
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.52 E-value=0.09 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+.|.|++|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 412
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.46 E-value=0.46 Score=47.48 Aligned_cols=66 Identities=20% Similarity=0.156 Sum_probs=34.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCeEEeech-------hhhhhhccCc-----hhHHHHHHHHHHhcCCeEEEEcC
Q 005738 228 ALLVGPPGTGKTLLAKATAGES---GVPFLSMSGS-------DFMEMFVGVG-----PSRVRSLFQEARQCAPSIVFIDE 292 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~---~~~~i~is~s-------~~~~~~~g~~-----~~~vr~lf~~A~~~~P~ILfIDE 292 (680)
.+++||.|+|||+.+-..+..+ |..++.+... .+.+.. |.. -....++++.+ ....+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 5689999999997665555433 5555544321 111111 110 00112344444 3357999999
Q ss_pred cchh
Q 005738 293 IDAI 296 (680)
Q Consensus 293 iD~L 296 (680)
+.-+
T Consensus 99 aQF~ 102 (234)
T 2orv_A 99 GQFF 102 (234)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9765
No 413
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.17 E-value=0.59 Score=52.22 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCChHHHH
Q 005738 225 PKGALLVGPPGTGKTLL 241 (680)
Q Consensus 225 p~gvLL~GppGtGKT~L 241 (680)
.+.+++.+|+|+|||+.
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46899999999999984
No 414
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.08 E-value=0.73 Score=49.68 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-++|.||+|+|||+|++.+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999998854
No 415
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.02 E-value=0.72 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=17.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~ 247 (680)
+.+++.+|+|+|||+.+-..+-
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999987644443
No 416
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.01 E-value=0.099 Score=58.45 Aligned_cols=26 Identities=12% Similarity=-0.098 Sum_probs=23.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGV 251 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~ 251 (680)
..++|.|.+||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999874
No 417
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.97 E-value=0.13 Score=51.25 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=22.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-------CCCeEEee
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES-------GVPFLSMS 257 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~-------~~~~i~is 257 (680)
.-|.|.||+|+||||+++.++..+ |.+++.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 347788999999999999999876 66655443
No 418
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.85 E-value=0.74 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..-+.|.|+||+||||++++++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998754
No 419
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.79 E-value=0.35 Score=48.74 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 568999999999998644
No 420
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.79 E-value=0.13 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-+++.|++|+|||+|++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 421
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.77 E-value=0.18 Score=54.03 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=16.3
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKAT 245 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAral 245 (680)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999954444
No 422
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.58 E-value=0.21 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCC
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVP 252 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~ 252 (680)
+.|.||+|+|||||++.+++.....
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 7899999999999999999987544
No 423
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.49 E-value=1.4 Score=51.76 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 224 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 224 ~p~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
.|..+|+.||.|+|||..+-..+-.. |...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35789999999999999776554433 555555543
No 424
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.46 E-value=0.13 Score=47.58 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 425
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.41 E-value=0.65 Score=49.29 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=30.9
Q ss_pred cccccccccchHHHHHHHHHHHHhcChhhHhhhc---CCCCCeEEEEcCCCChHHHHHHHH
Q 005738 188 KVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELG---AKIPKGALLVGPPGTGKTLLAKAT 245 (680)
Q Consensus 188 ~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~LAral 245 (680)
..+|+++.=.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 45788874444445444332 133233222111 111357999999999999765543
No 426
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.39 E-value=0.14 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 427
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.33 E-value=1.1 Score=47.04 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcChhhHhhhcC---CCCCeEEEEcCCCChHHHHHH
Q 005738 186 KDKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGA---KIPKGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 186 ~~~~~f~dv~G~~~~k~~L~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~LAr 243 (680)
....+|+++.=.+...+.|... .+..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3456798885444444444432 1223322222111 112569999999999998643
No 428
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.31 E-value=0.28 Score=53.60 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeEEeech
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFLSMSGS 259 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i~is~s 259 (680)
.++|++|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988888888777766554
No 429
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.31 E-value=0.11 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
-++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 430
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.29 E-value=0.18 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
...++|.|++|+|||+|++++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999864
No 431
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.25 E-value=0.21 Score=49.41 Aligned_cols=29 Identities=24% Similarity=0.069 Sum_probs=24.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
+-+.|.|++|+||||+++.++..++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45788999999999999999999876433
No 432
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.23 E-value=0.16 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 433
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.22 E-value=0.15 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
.+++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 434
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.20 E-value=0.11 Score=53.85 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=23.9
Q ss_pred hcCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005738 220 LGAKIPKG--ALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 220 ~g~~~p~g--vLL~GppGtGKT~LAralA~e~ 249 (680)
+.+.++.| +.|.||+|+|||||++.+++..
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34444444 7899999999999999999854
No 435
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.14 E-value=0.9 Score=44.69 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=14.9
Q ss_pred CeEEEEcCCCChHHHHH
Q 005738 226 KGALLVGPPGTGKTLLA 242 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LA 242 (680)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56899999999999863
No 436
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.13 E-value=1 Score=43.21 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-|+|.|++|+|||+|++++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 437
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.09 E-value=0.65 Score=44.95 Aligned_cols=18 Identities=28% Similarity=0.208 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||+.+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 578999999999998643
No 438
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.07 E-value=1.5 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=18.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
+.+++.+|+|+|||..+-..+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57899999999999886666543
No 439
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.97 E-value=0.17 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 440
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=89.96 E-value=0.6 Score=48.12 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHH
Q 005738 225 PKGALLVGPPGTGKTLLA 242 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LA 242 (680)
++.+++++|+|||||+..
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 578999999999999753
No 441
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.93 E-value=0.17 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
.+++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.81 E-value=0.17 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.||+|+|||||+|.+++..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 348999999999999999999864
No 443
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.80 E-value=0.15 Score=46.78 Aligned_cols=23 Identities=48% Similarity=0.699 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999864
No 444
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.77 E-value=0.18 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
-.+++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 445
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.51 Score=57.71 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCeEEeec
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES---GVPFLSMSG 258 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~---~~~~i~is~ 258 (680)
+.+|++||+|+|||+.+-..+..+ +...+.+..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 578999999999999775544433 444555543
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.70 E-value=0.17 Score=47.40 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-++|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 447
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.65 E-value=0.6 Score=49.38 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.4
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAK 243 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAr 243 (680)
+.+++.+|+|+|||+.+-
T Consensus 78 ~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCEEECCCSCSSSHHHHH
T ss_pred CCEEEECCCCCcccHHHH
Confidence 568999999999998743
No 448
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.17 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
-+++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 449
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.61 E-value=0.19 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 450
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.59 E-value=0.28 Score=51.13 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-++|+|+.|+||||+++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999764
No 451
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.59 E-value=0.18 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 452
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.58 E-value=0.19 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 453
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=89.58 E-value=0.51 Score=51.30 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.2
Q ss_pred CeEEEEcCCCChHHHHH
Q 005738 226 KGALLVGPPGTGKTLLA 242 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LA 242 (680)
+.+|++||+|+|||+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57899999999999975
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.58 E-value=0.2 Score=49.51 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 227 GALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
-+.|.||.|+||||+++.+++. +..+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 3678999999999999999987 44433
No 455
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.45 E-value=0.19 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 456
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.41 E-value=0.31 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..++++.||+|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987643
No 457
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.38 E-value=1.4 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
+.+++.+|+|+|||..+-..+.+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46899999999999887665543
No 458
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.37 E-value=0.18 Score=46.18 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005738 227 GALLVGPPGTGKTLLAKATAG 247 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~ 247 (680)
-+++.|++|+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999974
No 459
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.36 E-value=0.2 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 460
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.30 E-value=0.21 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
.+++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.29 E-value=0.21 Score=52.21 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=23.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
+|++|.|++|+|||++|.++.+. |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 68999999999999999999875 44443
No 462
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.29 E-value=0.31 Score=47.11 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=22.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 226 KGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
.-++|.|++|+|||+|+..++....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998753
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.28 E-value=0.2 Score=50.24 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGES---GVP 252 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~---~~~ 252 (680)
+.-+.|.|++|+||||+++.++..+ +.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3557889999999999999999876 555
No 464
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.21 E-value=0.16 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
..-+++.|++|+|||+|.+++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 465
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.19 E-value=0.17 Score=57.90 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCeEEeec
Q 005738 227 GALLVGPPGTGKTLLAKATAGES----GVPFLSMSG 258 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~----~~~~i~is~ 258 (680)
.+++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 57899999999999887776543 345554443
No 466
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.15 E-value=0.21 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..|+|.|++|+|||+|++++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 467
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.12 E-value=0.22 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 468
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.09 E-value=0.18 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999875
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.98 E-value=0.26 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
+.-|++.|++|+|||+|++++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999863
No 470
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.98 E-value=0.22 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 005738 228 ALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e 248 (680)
+++.|++|+|||+|++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 471
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.89 E-value=0.22 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999998544
No 472
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.87 E-value=0.22 Score=52.06 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCeE
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESGVPFL 254 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~~~~i 254 (680)
.+|+||.|++|+|||++|.++.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 37899999999999999999865 454444
No 473
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.81 E-value=0.23 Score=45.66 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998743
No 474
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.77 E-value=0.22 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 475
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.76 E-value=0.28 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
+..+++.|++|+|||+|++++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 476
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.70 E-value=0.23 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
+--|++.|++|+|||+|++++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999875
No 477
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.65 E-value=0.24 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
--+++.|++|+|||+|++++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.65 E-value=0.24 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005738 227 GALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e~ 249 (680)
.|++.|++|+|||+|++++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.57 E-value=0.26 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGESG 250 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e~~ 250 (680)
+.-+.|.|++|+||||+++.++..++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577889999999999999998653
No 480
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.56 E-value=0.23 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..+++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 481
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.56 E-value=0.11 Score=49.82 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-+.|.|++|+|||+|.+++++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999997643
No 482
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.54 E-value=1.1 Score=44.30 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHH-HHHHHHH--hcCCCeEEee
Q 005738 228 ALLVGPPGTGKTL-LAKATAG--ESGVPFLSMS 257 (680)
Q Consensus 228 vLL~GppGtGKT~-LAralA~--e~~~~~i~is 257 (680)
.+++||.|+|||+ |.+.+-+ ..+...+.+.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 5789999999999 5566533 2255554443
No 483
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.53 E-value=0.25 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..|++.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35899999999999999999874
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.53 E-value=0.22 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 005738 228 ALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e 248 (680)
+.|.||+|+|||||++++++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 689999999999999999986
No 485
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.49 E-value=0.25 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=20.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
.-++|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999998754
No 486
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.46 E-value=0.25 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
..|+|.|++|+|||+|++++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.42 E-value=0.25 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 488
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.37 E-value=0.32 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCC
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVP 252 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~ 252 (680)
+.|.||+|+|||||++.+++.....
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7899999999999999999987543
No 489
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.31 E-value=0.24 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 490
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.27 E-value=0.31 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
-+.|.||+|+|||||.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999984
No 491
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.22 E-value=0.18 Score=50.77 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=23.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCe
Q 005738 228 ALLVGPPGTGKTLLAKATAGESGVPF 253 (680)
Q Consensus 228 vLL~GppGtGKT~LAralA~e~~~~~ 253 (680)
+.|+|++|||||++++.++...|.+.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67999999999999999998888775
No 492
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.21 E-value=0.87 Score=55.63 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=16.4
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 005738 226 KGALLVGPPGTGKTLLAKAT 245 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAral 245 (680)
+.+++++|+|+|||+++-..
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHH
Confidence 56899999999999965444
No 493
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.17 E-value=0.25 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-+++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.16 E-value=0.24 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
+-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347789999999999999999876
No 495
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.09 E-value=0.24 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-|++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999753
No 496
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.96 E-value=0.28 Score=45.27 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005738 226 KGALLVGPPGTGKTLLAKATAGES 249 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e~ 249 (680)
..+++.|++|+|||+|++++.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.95 E-value=0.22 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005738 227 GALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 227 gvLL~GppGtGKT~LAralA~e 248 (680)
-+++.|++|+|||+|++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999874
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.91 E-value=0.3 Score=46.27 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005738 225 PKGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 225 p~gvLL~GppGtGKT~LAralA~e 248 (680)
...+++.|++|+|||+|++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 499
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=87.91 E-value=1.2 Score=53.31 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHhcC---CeEEEEcCcchhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCeEEEeccCCCCCCchhhcC
Q 005738 274 RSLFQEARQCA---PSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR 350 (680)
Q Consensus 274 r~lf~~A~~~~---P~ILfIDEiD~L~~~r~~~~~~~~~~~~~~~l~~LL~~md~~~~~~~ViVIaaTN~~~~LD~aLlR 350 (680)
|-.++.+.... |.++++||- +++.+......+..+|..+.. .+..||..+++.+ +++
T Consensus 813 RV~LAraL~~~p~~p~LLILDEP-----------TsGLD~~~~~~L~~lL~~L~~----~G~TVIvI~HdL~-----~i~ 872 (916)
T 3pih_A 813 RIKLASELRKRDTGRTLYILDEP-----------TVGLHFEDVRKLVEVLHRLVD----RGNTVIVIEHNLD-----VIK 872 (916)
T ss_dssp HHHHHHHHTSCCCSSEEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECCCHH-----HHT
T ss_pred HHHHHHHHhhCCCCCCEEEEECC-----------CCCCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHH-----HHH
Confidence 44455555443 579999994 456676666777777766532 2345566677543 233
Q ss_pred CCcccccccc
Q 005738 351 PGRFDRQITI 360 (680)
Q Consensus 351 pgRfd~~I~v 360 (680)
..|+.+.+
T Consensus 873 --~ADrIivL 880 (916)
T 3pih_A 873 --NADHIIDL 880 (916)
T ss_dssp --TCSEEEEE
T ss_pred --hCCEEEEe
Confidence 35666666
No 500
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.90 E-value=0.28 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005738 226 KGALLVGPPGTGKTLLAKATAGE 248 (680)
Q Consensus 226 ~gvLL~GppGtGKT~LAralA~e 248 (680)
.-|+|.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
Done!