BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005739
(680 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 44.3 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 12 FKWG----KKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGDAE-PHVGKLIKIWE 66
+KW ++RG+ GK + + FY++ + DC G P++G++ +WE
Sbjct: 2488 WKWSGNPTQRRGMKGKARKL-FYKAIVRGKETLRIGDCAVFLSAGRPNLPYIGRIESLWE 2546
Query: 67 NADKAKKVKLLWFFRPSDISNFLGNVQTL-ENELILACGEGVGLTNINPLEAIAGKCNVV 125
+ VK+ WF+ P + LG Q+ +N L +C E + N ++ I+ KC VV
Sbjct: 2547 SWGSNMVVKVKWFYHPEETK--LGKRQSDGKNALYQSCHE-----DENDVQTISHKCQVV 2599
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 42.7 bits (99), Expect = 0.010, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 12 FKWG----KKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGDAE-PHVGKLIKIWE 66
+KW ++RG+ GK + + FY++ + DC G P++G++ +WE
Sbjct: 2453 WKWSGNPTQRRGMKGKARKL-FYKAIVRGEETLRVGDCAVFLSAGRPNLPYIGRIESMWE 2511
Query: 67 NADKAKKVKLLWFFRPSDISNFLGNVQTL-ENELILACGEGVGLTNINPLEAIAGKCNVV 125
+ VK+ WF+ P + LG Q +N L +C E + N ++ I+ KC VV
Sbjct: 2512 SWGSNMVVKVKWFYHPEETK--LGKRQCDGKNALYQSCHE-----DENDVQTISHKCQVV 2564
>sp|P53236|RSC1_YEAST Chromatin structure-remodeling complex subunit RSC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC1 PE=1 SV=1
Length = 928
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 33 FTYDGVE-----YTLYDCVYLYKEGDA-EPHVGKLIKIWENADKAKKVKLLWFFRPSDIS 86
+ D VE Y + D V L+ D +P VG++ ++W D K + W+FRP
Sbjct: 358 YPLDDVEINDEKYQIGDWVLLHNPNDINKPIVGQIFRLWSTTDGNKWLNACWYFRPEQTV 417
Query: 87 NFLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDAR 132
+ + + +NE++ G +P++ I GKC V+ ++ R
Sbjct: 418 HRVDRL-FYKNEVM-----KTGQYRDHPIQDIKGKCYVIHFTRFQR 457
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 14 WG------KKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGDAE-PHVGKLIKIWE 66
WG +K G+ G+ + QFY++ T+ D G + P++G++ +WE
Sbjct: 1481 WGWYGTAYRKAGVKGRARK-QFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWE 1539
Query: 67 NADKAKKVKLLWFFRPSDIS 86
K V++ WF+ P + +
Sbjct: 1540 TTTGNKVVRVAWFYHPEETT 1559
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 29/131 (22%)
Query: 28 QFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87
+++ Y+ + + DCV++ G P VG++ K+W A +FF P
Sbjct: 1145 HYFEQLCYNDMWLKVGDCVFIKSHGLVRPRVGRIEKMWVRDGAA------YFFGPI---- 1194
Query: 88 FLGNVQTLENELILACGEGVGLTNIN---PLEAIAGKCNVVCTSKDARNPQPSDEELQIS 144
F+ +T + + V L+N+ P+ I GKC V L
Sbjct: 1195 FIHPEETEHEPTKMFYKKEVFLSNLEETCPMSCILGKCAV----------------LSFK 1238
Query: 145 DFIFCRTFDVG 155
DF+ CR ++
Sbjct: 1239 DFLCCRPTEIS 1249
Score = 39.7 bits (91), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 29 FYQSFTYDGVEYTLYDCVYLYK-EGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87
+ Q ++ Y + D VY+ E + +PH+ + ++WE++ K + WF+RP++ +
Sbjct: 945 YSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFH 1004
Query: 88 FLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVV 125
L + LE E+ + N P+ I GKC V+
Sbjct: 1005 -LATRKFLEKEVFKS-----DYYNKVPVSKILGKCVVM 1036
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 28 QFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87
+++ Y+ + + DCV++ G P VG++ K+W A +F+ P
Sbjct: 1146 HYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRDGAA------YFYGPI---- 1195
Query: 88 FLGNVQTLENELILACGEGVGLTNIN---PLEAIAGKCNVVCTSKDARNPQPSDEELQIS 144
F+ +T + + V L+N+ P+ I GKC V+ + KD + +P+ E+ +
Sbjct: 1196 FIHPEETEHEPTKMFYKKEVFLSNLEETCPMSCILGKCAVL-SFKDFLSCRPT--EIPEN 1252
Query: 145 DFIFCRT 151
D + C +
Sbjct: 1253 DILLCES 1259
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 19 GIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYK-EGDAEPHVGKLIKIWENADKAKKVKLL 77
G+ G + + Q ++ Y + D VY+ E + +PH+ + ++WE++ K +
Sbjct: 939 GLSGLHR--TYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGC 996
Query: 78 WFFRPSDISNFLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVV 125
WF+RP++ + L + LE E+ + N P+ I GKC V+
Sbjct: 997 WFYRPNETFH-LATRKFLEKEVFKS-----DYYNKVPVSKILGKCVVM 1038
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 28 QFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87
+++ Y+ + + DCV++ G P VG++ K+W A +F+ P
Sbjct: 1146 HYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRDGAA------YFYGPI---- 1195
Query: 88 FLGNVQTLENELILACGEGVGLTNIN---PLEAIAGKCNVVCTSKDARNPQPSDEELQIS 144
F+ +T + + V L+N+ P+ I GKC V+ + KD + +P+ E+ +
Sbjct: 1196 FIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVL-SFKDFLSCRPT--EIPEN 1252
Query: 145 DFIFCRT 151
D + C +
Sbjct: 1253 DILLCES 1259
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 29 FYQSFTYDGVEYTLYDCVYLYK-EGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87
+ Q ++ Y + D VY+ E + +PH+ + ++WE++ K + WF+RP++ +
Sbjct: 947 YSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFH 1006
Query: 88 FLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVV 125
L + LE E+ + N P+ I GKC V+
Sbjct: 1007 -LATRKFLEKEVFKS-----DYYNKVPVSKILGKCVVM 1038
>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit rsc1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc1 PE=1 SV=1
Length = 803
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 24 KKDVQFYQSFTYDGVEYTLYDCVYLYKEGDA-EPHVGKLIKIWENADKAKKVKLLWFFRP 82
K D+Q + + DG + D V + D+ +P V ++ +IW++ D V + W+ RP
Sbjct: 339 KNDIQ--PAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSDDDINYVTVCWYLRP 396
Query: 83 SDISNFLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDAR 132
+ + ENE+ L +P+ I G+C V+ ++ R
Sbjct: 397 EQTVH-RADAVFYENEVF-----KTSLYRDHPVSEIVGRCFVMYITRYIR 440
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 565
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 145 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 199
Query: 566 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 624
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 200 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 252
Query: 625 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 680
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 253 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 304
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 565
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 201
Query: 566 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 624
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 625 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 680
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 30 YQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSD 84
Y DG ++L D Y+ E + E HVG++++ ++ D ++ WF+R +D
Sbjct: 570 YSQAKVDGHTFSLGDFAYIKGE-EEETHVGQIVEFFKTTDGESYFRVQWFYRATD 623
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 565
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 148 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 202
Query: 566 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 624
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 203 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 255
Query: 625 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 680
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 256 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 307
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 565
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 201
Query: 566 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 624
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 625 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 680
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 565
RIR A HG + ++NL P V +L+ AF + + + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVE 201
Query: 566 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 624
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCSDGAFLLT-------TTPRPVVVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 625 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 680
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 14 WGKK--RGIGGKKKDVQ-------FYQSFTYDGVEYTLYDCVYLYKEGDAEP-HVGKLIK 63
W K+ R KK D + Y+S D V Y L D VY+ K G+ E ++G++ +
Sbjct: 151 WPKRYGRSTAAKKPDEEEELKARCHYRSAKVDNVVYCLGDDVYV-KAGENEADYIGRITE 209
Query: 64 IWENADKAKKVKLLWFFRPSD 84
+E D+ WFFR D
Sbjct: 210 FFEGTDQCHYFTCRWFFRAED 230
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 30 YQSFTYDGVEYTLYDCVYLYKEGDAEP-HVGKLIKIWENADKAKKVKLLWFFRPSD 84
Y+S D + Y L D VY+ K G+ E ++G++ + +E D+ WFFR D
Sbjct: 180 YRSAKVDNIVYCLGDDVYV-KAGENEADYIGRITEFFEGTDRCHYFTCRWFFRAED 234
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 30 YQSFTYDGVEYTLYDCVYLYKEGDAEP-HVGKLIKIWENADKAKKVKLLWFFRPSD 84
Y+S D + Y L D VY+ K G+ E ++G++ + +E D+ WFFR D
Sbjct: 180 YRSAKVDNIVYCLGDDVYV-KAGENEADYIGRITEFFEGTDRCHYFTCRWFFRAED 234
>sp|P68720|VTF3S_VACCW Intermediate transcription factor 3 small subunit OS=Vaccinia virus
(strain Western Reserve) GN=VITF3S PE=1 SV=1
Length = 288
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 282 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 341
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 342 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 396
+K+ V S+ S A+E+K +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFTCSLAVESKLPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|P68719|VTF3S_VACCA Intermediate transcription factor 3 small subunit OS=Vaccinia virus
(strain Ankara) GN=VITF3S PE=2 SV=1
Length = 288
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 282 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 341
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 342 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 396
+K+ V S+ S A+E+K +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFTCSLAVESKLPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens
GN=TNRC18 PE=1 SV=3
Length = 2968
Score = 36.2 bits (82), Expect = 0.85, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 16 KKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGDAE-PHVGKLIKIWENADKAKKV 74
++RG+ GK + + FY++ + DC G P++G++ +WE+ V
Sbjct: 2796 QRRGMKGKARKL-FYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVV 2854
Query: 75 KLLWFFRPSDIS 86
++ WF+ P + S
Sbjct: 2855 RVKWFYHPEETS 2866
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 21 GGKKKDVQF-------YQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKK 73
GGKK+D + + DGV L D VY+ + K+I+++E D
Sbjct: 55 GGKKEDEEIIKQAKCHFDKALVDGVLINLNDDVYVTGLPGKLKFIAKVIELFEADDGVPY 114
Query: 74 VKLLWFFRPSD--ISNFLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNV 124
+ W++RP D I F VQ + L+ E N NPL I K N+
Sbjct: 115 CRFRWYYRPEDTLIERFSHLVQP--KRVFLSNDE-----NDNPLTCIWSKVNI 160
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus
GN=Tnrc18 PE=1 SV=2
Length = 2878
Score = 36.2 bits (82), Expect = 0.99, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 16 KKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGDAE-PHVGKLIKIWENADKAKKV 74
++RG+ GK + + FY++ + DC G P++G++ +WE+ V
Sbjct: 2706 QRRGMKGKARKL-FYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVV 2764
Query: 75 KLLWFFRPSDIS 86
++ WF+ P + S
Sbjct: 2765 RVKWFYHPEETS 2776
>sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4
OS=Arabidopsis thaliana GN=MED4 PE=1 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 100 ILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPSDEELQISDFIFCRTFDVGLRKV 159
ILA + T P E AG+ + + A P P DE+++ S D+GL K
Sbjct: 245 ILAYAHKISYTTFAPPEFGAGQAPL----RGALPPAPQDEQMRASQLYTFADLDIGLPKT 300
Query: 160 LDKIDEKIAGI 170
++ +++K+ +
Sbjct: 301 VENMEKKVEAL 311
>sp|P20986|VTF3S_VACCC Intermediate transcription factor 3 small subunit OS=Vaccinia virus
(strain Copenhagen) GN=VITF3S PE=2 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 282 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 341
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 342 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 396
+K+ V S+ S A+E++ +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFTCSLAVESELPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 565
RIR A HG + + NL P V +L+ AF + + I V G+ V
Sbjct: 142 RIRFA-THGAALTVRNLSP----VVSNELLEQAFSQFGPVERAIVIVDDRGRPTGKGIVE 196
Query: 566 FKTREVAELVVTKLEEGCLLLSNG-RPLLGSIGTPCFTGKQSKFVGHLALDK-LKFQMQR 623
F + A + +G LLL+ RP+ I P + L K ++ +R
Sbjct: 197 FANKPAARKALDHCADGALLLTTSPRPV---ILEPTEQYDDEDGLPEKLLQKSAQYHKER 253
Query: 624 EMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 680
E + H +QP + E++ + W L E +D K+ EQ E +++ K KL+++
Sbjct: 254 EHK-----PHFAQPGTFEFEYSSRWKALDE-MD---KQQREQVERNIQEAKEKLETE 301
>sp|P33834|VTF3S_VAR67 Intermediate transcription factor 3 small subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=VITF3S PE=2 SV=1
Length = 288
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 282 NEHTKVLTTKQKSSFAERPVSSVDSKAWLVGMKSSLGEKVSSIGGAQQGEIVRTIKPGIT 341
+EH+ + ++ S+ +S + + +L+ +KS L + +S GA ++V T+ IT
Sbjct: 167 DEHSSGIFNIRQESYLVSSLSEITYRFYLINLKSDLVQWSAS-TGAVINQMVNTV--LIT 223
Query: 342 FGDKIASSSKVGFEKSKAKSSKALETKEEVKSFKDPNELYNGPSNKAKFDSSRKV 396
+K+ V S+ S A+E++ +K KD NEL+ N+ K SS K+
Sbjct: 224 VYEKL---QLVIENDSQFICSLAVESELPIKLLKDRNELFTKFINELKKTSSFKI 275
>sp|Q197C1|ICP46_IIV3 Immediate-early protein ICP-46 homolog OS=Invertebrate iridescent
virus 3 GN=IIV3-039R PE=3 SV=1
Length = 443
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTV---------VEDLVWHAFKENCSAKMIPRVAFASP 557
++RVA + ++ +L+ L P YT+T + D+++H + + ++P +P
Sbjct: 279 QLRVAQDDASIALLKQLFPQYTATFQSHEQSVDWLVDVIYHEYTKRKQRSLLPSDLTTTP 338
Query: 558 YFGQSFVIF-KTREVAELVVTKLEEGCLL 585
Q +F K + + + V+TK LL
Sbjct: 339 QIDQRMYLFIKNKLINKGVITKERIKALL 367
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 566
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 145 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 200
Query: 567 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 625
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 201 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 253
Query: 626 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 671
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 306
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 566
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 142 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 197
Query: 567 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 625
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 198 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 250
Query: 626 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 671
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 303
>sp|P53127|SNT2_YEAST SANT domain-containing protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNT2 PE=1 SV=1
Length = 1403
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 25/110 (22%)
Query: 33 FTYDGVEYTLYDCVYLYKEGDAEPH-VGKLIKIWENAD-----------------KAKKV 74
F + V + D +Y+ E EP+ VG+++ + K +V
Sbjct: 116 FNTESVLLSANDTIYMISEPAGEPYYVGRVVNFVSKPEFSNTIHEAIKTTSVFPAKFFQV 175
Query: 75 KLLWFFRPSDISNFLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNV 124
++ WF+RP DI +V T L+ A +I P+ + GKC++
Sbjct: 176 RMNWFYRPRDIQE---HVNTFNPRLVYASLH----QDICPISSYRGKCSI 218
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 566
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 140 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 195
Query: 567 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 625
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 196 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 248
Query: 626 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 671
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 301
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 566
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 140 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 195
Query: 567 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 625
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 196 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 248
Query: 626 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 671
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 301
>sp|Q8MEX4|MATK_ZAMIT Maturase K OS=Zamia integrifolia GN=matK PE=3 SV=1
Length = 514
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 497 KWFKELPWEERIR-VAHEHGTLVVLENLD-----PSYTSTVVEDLVWHAFKENCSAKMIP 550
+W ++ P+ +R V HEH L++ NLD S +T + +W+++ C + ++P
Sbjct: 166 RWIQDAPFLHSLRFVLHEHRNLIISSNLDQLILIASKENTRLSLFLWNSYAYECESLLVP 225
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 40 YTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSD 84
Y L D Y+ +P + K+I+++E A+ WF+RPSD
Sbjct: 110 YELNDDAYVQSGEGKDPFICKIIEMFEGANGKLYFTARWFYRPSD 154
>sp|Q65UE1|POTA_MANSM Spermidine/putrescine import ATP-binding protein PotA OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=potA PE=3 SV=1
Length = 373
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 33/140 (23%)
Query: 310 LVGMKSSLGEKVSSIGGAQQGEIV--RTI--KPGITFGDKIASSSKVGFEKSKAKSSKAL 365
+V ++ K + + G QQ I R + KP + D+ S+ K KAL
Sbjct: 127 MVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL 186
Query: 366 ETK------------EEVKSFKD---------------PNELYNGPSN--KAKFDSSRKV 396
+ K EE + D P E+Y PSN AKF +
Sbjct: 187 QRKLGITFIFVTHDQEEALTMSDRIIVLRKGNIEQDGSPREIYEEPSNLFVAKFIGEINI 246
Query: 397 FDDKIKNRVQKLGLDSNVHG 416
FD ++ NRV + + +NV G
Sbjct: 247 FDAQVLNRVDEKRVRANVEG 266
>sp|Q8MEX7|MATK_MACCO Maturase K OS=Macrozamia communis GN=matK PE=3 SV=1
Length = 499
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 497 KWFKELPWEERIR-VAHEHGTLVVLENLD-----PSYTSTVVEDLVWHAFKENCSAKMIP 550
+W ++ P+ +R V HEH L++ NLD S +T + +W+ + C + ++P
Sbjct: 166 RWIQDAPFLHSLRSVLHEHRNLIISSNLDQLILIASKKNTRLSLFLWNYYAYECESLLVP 225
>sp|Q8TLL2|GLMM_METAC Probable phosphoglucosamine mutase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=glmM
PE=3 SV=2
Length = 434
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 90 GNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKD------ARNPQPSDEELQI 143
G V+ + ++L CG G G T I P C V+ + ARNP+P+D+ L +
Sbjct: 154 GLVRDSKLRVVLDCGCGAGST-ITPYLLQELGCQVITLNSQPDGHFPARNPEPNDQNLSL 212
Query: 144 ---------SDFIFCRTFDVGLRKVLDKIDEKIAGIEVKFIFNR--QGYQNSSVALKLDS 192
+DF D +D+ ++G E+ IF R G + +V + +D+
Sbjct: 213 LKKAVVAFEADFGIAHDGDADRMMAVDEKGNFVSGDELLAIFGRFECGDEKGTVVVPVDT 272
Query: 193 N 193
+
Sbjct: 273 S 273
>sp|Q494C0|MNME_BLOPB tRNA modification GTPase MnmE OS=Blochmannia pennsylvanicus (strain
BPEN) GN=mnmE PE=3 SV=1
Length = 470
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 20 IGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWF 79
I G +D ++ +G+ + + D L K+ D E + + WE A + LW
Sbjct: 249 ISGTTRDT-LHEYIQLNGIAFHITDTAGLQKKSDNEIEQIGMKRTWEELSNADHI--LWV 305
Query: 80 FRPSDISNFLGNVQTLENELILAC 103
P+D++N ++ E +L C
Sbjct: 306 IDPNDVTNKENDITLKHVEKVLFC 329
>sp|Q12TN0|GLMM_METBU Probable phosphoglucosamine mutase OS=Methanococcoides burtonii
(strain DSM 6242) GN=glmM PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 88 FLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKD------ARNPQPSDEEL 141
L NV+ +I+ CG G G T I P C V+ + ARNP+P+D L
Sbjct: 152 ILQNVKRSSKRVIIDCGCGAGST-ITPYVLRKMGCEVITLNSQPDGYFPARNPEPNDTNL 210
Query: 142 QI---------SDFIFCRTFDVGLRKVLDKIDEKIAGIEVKFIFNRQ 179
+ +D + D +D+ E I G E+ +F R
Sbjct: 211 TLLKIAVKEFGADIGIAQDGDADRMMAIDEKGEFITGDEMLALFARH 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,343,791
Number of Sequences: 539616
Number of extensions: 10465932
Number of successful extensions: 24702
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 24619
Number of HSP's gapped (non-prelim): 236
length of query: 680
length of database: 191,569,459
effective HSP length: 124
effective length of query: 556
effective length of database: 124,657,075
effective search space: 69309333700
effective search space used: 69309333700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)