Query 005739
Match_columns 680
No_of_seqs 126 out of 216
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 06:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 99.9 1.1E-28 3.8E-33 233.4 8.2 137 18-164 7-144 (174)
2 3av4_A DNA (cytosine-5)-methyl 99.9 6.8E-23 2.3E-27 242.0 14.5 144 9-162 441-593 (1330)
3 3swr_A DNA (cytosine-5)-methyl 99.9 1.9E-22 6.4E-27 233.3 15.4 143 9-162 130-281 (1002)
4 4ft4_B DNA (cytosine-5)-methyl 99.9 3E-22 1E-26 222.9 8.6 131 27-163 45-181 (784)
5 3swr_A DNA (cytosine-5)-methyl 99.7 1.8E-17 6.3E-22 192.0 11.9 134 27-167 322-505 (1002)
6 4dov_A ORC1, origin recognitio 99.7 3.3E-16 1.1E-20 149.4 17.6 143 10-158 5-158 (163)
7 3av4_A DNA (cytosine-5)-methyl 99.7 1.8E-17 6.3E-22 196.2 9.0 135 27-168 634-817 (1330)
8 3sde_A Paraspeckle component 1 99.4 2.6E-12 9E-17 125.0 11.5 153 515-677 96-249 (261)
9 2fl7_A Regulatory protein SIR3 98.8 4E-09 1.4E-13 105.7 7.0 124 28-160 41-188 (232)
10 1m4z_A Origin recognition comp 98.8 2.5E-09 8.6E-14 107.5 4.2 124 28-160 41-188 (238)
11 4fxv_A ELAV-like protein 1; RN 98.4 5.2E-07 1.8E-11 77.0 7.0 94 502-600 6-99 (99)
12 1x4g_A Nucleolysin TIAR; struc 98.2 8.5E-06 2.9E-10 69.3 10.9 94 500-604 10-103 (109)
13 4a8x_A RNA-binding protein wit 98.1 4.7E-06 1.6E-10 67.3 5.6 85 514-602 3-87 (88)
14 2dis_A Unnamed protein product 98.0 2E-05 6.9E-10 66.5 9.5 87 515-602 8-94 (109)
15 1nu4_A U1A RNA binding domain; 98.0 8.1E-06 2.8E-10 67.4 6.5 84 513-600 6-89 (97)
16 1x5t_A Splicing factor 3B subu 98.0 2.7E-05 9.3E-10 64.1 9.3 86 514-604 4-90 (96)
17 2lxi_A RNA-binding protein 10; 98.0 2.8E-05 9.6E-10 65.1 9.1 82 516-600 2-83 (91)
18 2d9p_A Polyadenylate-binding p 98.0 6.6E-06 2.2E-10 69.0 4.9 87 512-605 12-98 (103)
19 3ucg_A Polyadenylate-binding p 98.0 1.8E-05 6.1E-10 64.2 7.2 85 513-603 4-88 (89)
20 3r27_A HnRNP L, heterogeneous 97.9 1.7E-05 5.6E-10 69.9 7.4 79 513-600 19-97 (100)
21 2dhg_A TRNA selenocysteine ass 97.9 1.5E-05 5.3E-10 66.7 6.9 88 513-605 7-95 (104)
22 2dnz_A Probable RNA-binding pr 97.9 3E-05 1E-09 63.7 8.5 88 514-606 4-91 (95)
23 2la4_A Nuclear and cytoplasmic 97.9 2.3E-05 7.7E-10 65.5 7.8 86 503-599 15-100 (101)
24 2cqi_A Nucleolysin TIAR; RNA r 97.9 5.4E-05 1.8E-09 63.5 9.8 87 512-605 12-98 (103)
25 2cph_A RNA binding motif prote 97.9 3.9E-05 1.3E-09 64.4 8.5 90 512-604 12-101 (107)
26 2dgx_A KIAA0430 protein; RRM d 97.9 5.3E-05 1.8E-09 63.4 9.3 83 512-601 6-91 (96)
27 2dgo_A Cytotoxic granule-assoc 97.9 3.8E-05 1.3E-09 65.6 7.9 91 513-608 13-103 (115)
28 2ywk_A Putative RNA-binding pr 97.9 2.9E-05 9.8E-10 63.9 6.9 83 510-598 11-93 (95)
29 2dgp_A Bruno-like 4, RNA bindi 97.9 8.3E-05 2.8E-09 62.5 9.8 91 513-605 11-101 (106)
30 3ulh_A THO complex subunit 4; 97.8 2.3E-05 7.9E-10 66.0 6.1 83 509-597 23-105 (107)
31 2kt5_A RNA and export factor-b 97.8 5.4E-05 1.9E-09 65.8 8.6 86 511-602 31-116 (124)
32 2jvr_A Nucleolar protein 3; RN 97.8 5.1E-05 1.8E-09 67.0 8.5 81 514-602 27-107 (111)
33 3ex7_B RNA-binding protein 8A; 97.8 4E-05 1.4E-09 66.5 7.7 89 513-606 20-108 (126)
34 2do4_A Squamous cell carcinoma 97.8 2.6E-05 8.9E-10 65.1 6.3 83 514-602 16-98 (100)
35 1sjq_A Polypyrimidine tract-bi 97.8 6.6E-05 2.3E-09 66.5 9.1 82 513-604 14-96 (105)
36 2cq3_A RNA-binding protein 9; 97.8 5.9E-05 2E-09 63.2 8.3 85 513-604 13-97 (103)
37 1x4h_A RNA-binding protein 28; 97.8 7.6E-05 2.6E-09 63.0 8.7 89 512-604 12-105 (111)
38 2cqb_A Peptidyl-prolyl CIS-tra 97.8 6.2E-05 2.1E-09 62.8 7.6 87 514-605 11-97 (102)
39 1x4a_A Splicing factor, argini 97.8 8.7E-05 3E-09 62.9 8.6 83 513-603 20-102 (109)
40 2dgu_A Heterogeneous nuclear r 97.8 8.3E-05 2.8E-09 62.6 8.3 80 512-604 8-87 (103)
41 2cpx_A Hypothetical protein FL 97.8 0.00011 3.6E-09 62.7 9.0 84 514-605 24-110 (115)
42 1x5s_A Cold-inducible RNA-bind 97.7 0.00012 4.1E-09 61.1 9.1 87 513-604 10-96 (102)
43 2dnp_A RNA-binding protein 14; 97.7 0.00011 3.9E-09 60.2 8.6 79 513-604 7-85 (90)
44 1x4c_A Splicing factor, argini 97.7 8.1E-05 2.8E-09 63.5 7.9 80 514-605 14-98 (108)
45 2dgv_A HnRNP M, heterogeneous 97.7 6.3E-05 2.1E-09 61.5 7.0 84 513-603 6-89 (92)
46 2cq1_A PTB-like protein L; RRM 97.7 4.2E-05 1.4E-09 66.3 6.1 83 513-604 13-95 (101)
47 2kn4_A Immunoglobulin G-bindin 97.7 0.00013 4.6E-09 65.3 9.5 87 513-604 68-154 (158)
48 3mdf_A Peptidyl-prolyl CIS-tra 97.7 6.1E-05 2.1E-09 60.6 6.4 80 513-597 5-84 (85)
49 2dgt_A RNA-binding protein 30; 97.7 0.00014 4.7E-09 59.9 8.7 79 513-604 8-86 (92)
50 2do0_A HnRNP M, heterogeneous 97.7 6.1E-05 2.1E-09 64.0 6.6 85 513-603 13-97 (114)
51 2cpz_A CUG triplet repeat RNA- 97.7 8.2E-05 2.8E-09 63.7 7.4 88 514-606 24-111 (115)
52 1whw_A Hypothetical protein ri 97.7 0.00018 6.1E-09 59.7 9.1 86 513-603 6-91 (99)
53 2fc9_A NCL protein; structure 97.7 0.00013 4.5E-09 60.8 8.4 83 513-604 13-95 (101)
54 2cpf_A RNA binding motif prote 97.7 7E-05 2.4E-09 62.1 6.6 88 514-605 4-93 (98)
55 2fy1_A RNA-binding motif prote 97.7 0.00013 4.5E-09 63.5 8.6 83 513-601 5-87 (116)
56 1x5o_A RNA binding motif, sing 97.7 4.2E-05 1.4E-09 65.2 5.4 83 514-599 24-111 (114)
57 2e44_A Insulin-like growth fac 97.7 0.00011 3.7E-09 60.7 7.6 79 514-600 14-92 (96)
58 1oo0_B CG8781-PA, drosophila Y 97.7 0.00011 3.7E-09 62.3 7.7 86 513-603 24-109 (110)
59 1p27_B RNA-binding protein 8A; 97.7 6.1E-05 2.1E-09 63.3 6.0 85 513-602 21-105 (106)
60 3p5t_L Cleavage and polyadenyl 97.7 5.1E-05 1.8E-09 62.6 5.4 82 518-604 4-87 (90)
61 2cpe_A RNA-binding protein EWS 97.7 0.00012 4.2E-09 62.2 8.0 89 513-605 13-108 (113)
62 1h2v_Z 20 kDa nuclear CAP bind 97.7 8E-05 2.7E-09 67.1 7.2 92 509-605 33-124 (156)
63 3md1_A Nuclear and cytoplasmic 97.7 7.6E-05 2.6E-09 59.7 6.2 80 516-600 2-81 (83)
64 2e5j_A Methenyltetrahydrofolat 97.6 0.00011 3.7E-09 61.3 7.3 80 513-602 17-96 (97)
65 2dgw_A Probable RNA-binding pr 97.6 5.9E-05 2E-09 61.9 5.6 81 512-600 7-87 (91)
66 2hvz_A Splicing factor, argini 97.6 0.00018 6.1E-09 60.1 8.6 75 517-601 2-76 (101)
67 2a3j_A U1 small nuclear ribonu 97.6 0.00014 4.8E-09 65.5 8.5 79 514-599 28-109 (127)
68 2dnm_A SRP46 splicing factor; 97.6 0.00014 4.8E-09 60.9 7.9 87 513-604 11-97 (103)
69 2cpd_A Apobec-1 stimulating pr 97.6 0.00018 6.2E-09 60.0 8.5 80 513-604 13-93 (99)
70 2cqc_A Arginine/serine-rich sp 97.6 9E-05 3.1E-09 60.7 6.4 82 512-598 12-93 (95)
71 2fc8_A NCL protein; structure 97.6 6.9E-05 2.4E-09 62.5 5.8 84 513-604 13-96 (102)
72 2dnh_A Bruno-like 5, RNA bindi 97.6 0.00012 4E-09 61.4 7.1 88 513-605 13-102 (105)
73 1fje_B Nucleolin RBD12, protei 97.6 0.00014 4.7E-09 65.1 7.9 108 512-630 10-121 (175)
74 2ad9_A Polypyrimidine tract-bi 97.6 9.3E-05 3.2E-09 66.7 6.7 81 514-604 30-111 (119)
75 2f3j_A RNA and export factor b 97.6 0.00016 5.5E-09 67.9 8.6 83 512-600 85-167 (177)
76 2jvo_A Nucleolar protein 3; nu 97.6 0.00011 3.9E-09 63.3 7.0 80 509-601 25-104 (108)
77 1wex_A Hypothetical protein (r 97.6 0.00013 4.3E-09 63.5 7.3 79 515-602 15-93 (104)
78 2diu_A KIAA0430 protein; struc 97.6 0.00018 6.3E-09 63.8 8.3 76 514-599 8-83 (96)
79 1why_A Hypothetical protein ri 97.6 0.00016 5.6E-09 60.0 7.5 79 515-602 17-95 (97)
80 2e5h_A Zinc finger CCHC-type a 97.6 0.00012 4.1E-09 60.0 6.5 79 514-597 15-93 (94)
81 2jwn_A Embryonic polyadenylate 97.6 0.00015 5E-09 62.7 7.4 90 510-605 31-120 (124)
82 1p1t_A Cleavage stimulation fa 97.6 5.8E-05 2E-09 63.0 4.6 84 512-600 5-88 (104)
83 3bs9_A Nucleolysin TIA-1 isofo 97.6 0.00013 4.3E-09 58.9 6.4 82 514-600 5-86 (87)
84 2cpi_A CCR4-NOT transcription 97.6 9E-05 3.1E-09 63.6 5.8 84 514-601 14-102 (111)
85 2dnq_A RNA-binding protein 4B; 97.6 0.00025 8.5E-09 58.2 8.1 78 514-604 7-84 (90)
86 3lqv_A PRE-mRNA branch site pr 97.6 0.00015 5.3E-09 61.8 7.1 86 510-603 3-88 (115)
87 2kxn_B Transformer-2 protein h 97.6 0.00011 3.8E-09 65.5 6.5 85 513-602 44-128 (129)
88 2x1f_A MRNA 3'-END-processing 97.5 0.00025 8.5E-09 58.8 8.1 81 516-601 3-83 (96)
89 2err_A Ataxin-2-binding protei 97.5 0.00017 5.7E-09 61.9 7.3 91 503-600 16-107 (109)
90 2ki2_A SS-DNA binding protein 97.5 0.00013 4.6E-09 59.5 6.4 81 516-602 2-82 (90)
91 1fjc_A Nucleolin RBD2, protein 97.5 0.00012 3.9E-09 60.5 6.0 82 511-602 12-93 (96)
92 2hzc_A Splicing factor U2AF 65 97.5 0.00024 8.3E-09 57.3 7.8 72 513-595 4-85 (87)
93 1whx_A Hypothetical protein ri 97.5 0.00017 5.7E-09 62.4 7.2 75 514-599 9-83 (111)
94 2dng_A Eukaryotic translation 97.5 0.00012 4E-09 61.5 6.0 86 513-605 13-98 (103)
95 2dgs_A DAZ-associated protein 97.5 0.00026 8.9E-09 58.9 8.0 86 513-604 8-93 (99)
96 1fj7_A Nucleolin RBD1, protein 97.5 0.00031 1E-08 58.6 8.3 83 513-602 15-97 (101)
97 1wi8_A EIF-4B, eukaryotic tran 97.5 0.00023 8E-09 59.8 7.6 85 514-604 14-98 (104)
98 1wf1_A RNA-binding protein RAL 97.5 0.00019 6.6E-09 61.0 7.1 77 514-603 26-103 (110)
99 2cq0_A Eukaryotic translation 97.5 0.00011 3.6E-09 61.6 5.4 88 513-605 13-100 (103)
100 1fje_B Nucleolin RBD12, protei 97.5 0.00026 8.8E-09 63.3 8.2 77 514-600 98-174 (175)
101 2qfj_A FBP-interacting repress 97.5 0.00022 7.7E-09 65.4 7.9 93 507-604 117-209 (216)
102 2i2y_A Fusion protein consists 97.5 0.00027 9.2E-09 63.3 8.1 79 512-600 70-148 (150)
103 2mss_A Protein (musashi1); RNA 97.5 0.00023 7.8E-09 56.2 6.8 73 518-596 2-74 (75)
104 1x5u_A Splicing factor 3B subu 97.5 0.00042 1.4E-08 58.0 8.7 84 513-601 13-96 (105)
105 2ytc_A PRE-mRNA-splicing facto 97.5 0.00016 5.6E-09 58.2 6.0 75 513-597 10-84 (85)
106 2khc_A Testis-specific RNP-typ 97.5 0.00021 7.2E-09 61.2 7.0 80 513-597 38-117 (118)
107 2div_A TRNA selenocysteine ass 97.5 0.00028 9.5E-09 58.5 7.4 85 512-601 6-95 (99)
108 2lkz_A RNA-binding protein 5; 97.5 0.00018 6.3E-09 61.5 6.4 81 517-598 11-93 (95)
109 2krb_A Eukaryotic translation 97.5 0.00037 1.3E-08 56.2 7.8 74 515-594 1-80 (81)
110 2cpj_A Non-POU domain-containi 97.5 0.00023 8E-09 59.3 6.8 79 512-601 12-90 (99)
111 2cqh_A IGF-II mRNA-binding pro 97.4 0.00027 9.3E-09 58.1 7.1 79 514-603 7-86 (93)
112 2adc_A Polypyrimidine tract-bi 97.4 0.00023 7.7E-09 67.8 7.5 78 514-600 150-228 (229)
113 2lea_A Serine/arginine-rich sp 97.4 0.00024 8.3E-09 63.6 7.1 87 513-604 45-131 (135)
114 1x4f_A Matrin 3; structural ge 97.4 6.2E-05 2.1E-09 67.2 3.2 77 514-600 24-102 (112)
115 2j76_E EIF-4B, EIF4B, eukaryot 97.4 0.00014 4.9E-09 61.2 5.2 85 509-599 13-97 (100)
116 3md3_A Nuclear and cytoplasmic 97.4 0.00023 7.9E-09 62.2 6.6 81 514-599 86-166 (166)
117 4f25_A Polyadenylate-binding p 97.4 0.00019 6.5E-09 62.1 6.0 77 517-600 7-83 (115)
118 2cqd_A RNA-binding region cont 97.4 0.00053 1.8E-08 58.7 8.8 83 512-600 14-96 (116)
119 2jrs_A RNA-binding protein 39; 97.4 0.00012 4E-09 63.1 4.6 88 508-600 19-106 (108)
120 1qm9_A Polypyrimidine tract-bi 97.4 0.00027 9.3E-09 64.7 7.1 78 514-600 119-197 (198)
121 3nmr_A Cugbp ELAV-like family 97.4 0.00016 5.6E-09 63.9 5.4 81 514-597 94-174 (175)
122 1wg1_A KIAA1579 protein, homol 97.4 0.00012 4.1E-09 60.2 4.1 71 515-597 5-75 (88)
123 1x5p_A Negative elongation fac 97.4 0.00053 1.8E-08 57.1 8.1 82 514-608 14-95 (97)
124 1x4d_A Matrin 3; structural ge 97.4 0.00021 7.3E-09 62.4 5.8 77 514-599 14-91 (102)
125 2pe8_A Splicing factor 45; RRM 97.4 0.00048 1.6E-08 59.9 7.9 83 514-599 7-93 (105)
126 1u6f_A Tcubp1, RNA-binding pro 97.4 0.00048 1.6E-08 60.6 7.9 86 513-603 40-125 (139)
127 1rk8_A CG8781-PA, CG8781-PA pr 97.3 0.00027 9.1E-09 64.7 6.3 87 513-604 70-156 (165)
128 2xnq_A Nuclear polyadenylated 97.3 0.00049 1.7E-08 58.0 7.4 76 511-599 18-94 (97)
129 2ghp_A U4/U6 snRNA-associated 97.3 0.00037 1.3E-08 67.7 7.5 86 510-600 205-291 (292)
130 2dit_A HIV TAT specific factor 97.3 0.0007 2.4E-08 58.3 8.4 79 515-601 15-103 (112)
131 2cqp_A RNA-binding protein 12; 97.3 0.00026 8.9E-09 58.6 5.5 82 513-599 13-94 (98)
132 2cq4_A RNA binding motif prote 97.3 0.00022 7.6E-09 60.9 5.0 83 511-599 21-103 (114)
133 2ek1_A RNA-binding protein 12; 97.3 0.00032 1.1E-08 57.6 5.7 79 515-598 15-93 (95)
134 1fxl_A Paraneoplastic encephal 97.3 0.00087 3E-08 58.5 8.7 106 516-630 3-110 (167)
135 1uaw_A Mouse-musashi-1; RNP-ty 97.3 0.00043 1.5E-08 54.6 6.0 74 518-597 3-76 (77)
136 2ghp_A U4/U6 snRNA-associated 97.2 0.00057 1.9E-08 66.4 7.9 108 514-630 116-233 (292)
137 3n9u_C Cleavage and polyadenyl 97.2 0.0005 1.7E-08 63.5 7.0 82 513-599 53-136 (156)
138 2dh8_A DAZ-associated protein 97.2 0.00048 1.7E-08 57.8 6.3 86 513-604 14-99 (105)
139 2g4b_A Splicing factor U2AF 65 97.2 0.002 6.9E-08 57.0 10.6 108 513-630 2-116 (172)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.2 0.00086 2.9E-08 58.4 8.1 78 514-596 62-139 (140)
141 2la6_A RNA-binding protein FUS 97.2 0.0005 1.7E-08 57.3 6.3 80 513-597 11-98 (99)
142 2cpy_A RNA-binding protein 12; 97.2 0.00033 1.1E-08 60.4 5.3 80 513-599 13-93 (114)
143 3s8s_A Histone-lysine N-methyl 97.2 0.0005 1.7E-08 59.8 6.4 79 515-598 6-84 (110)
144 1b7f_A Protein (SXL-lethal pro 97.2 0.00081 2.8E-08 59.2 7.6 107 515-630 3-111 (168)
145 1qm9_A Polypyrimidine tract-bi 97.2 0.001 3.6E-08 60.8 8.4 75 515-599 3-78 (198)
146 3tyt_A Heterogeneous nuclear r 97.2 0.00061 2.1E-08 65.0 7.0 75 514-598 3-78 (205)
147 2rs2_A Musashi-1, RNA-binding 97.2 0.001 3.5E-08 57.2 7.8 90 508-603 18-107 (109)
148 2nlw_A Eukaryotic translation 97.2 0.0016 5.4E-08 55.4 8.8 80 514-599 14-99 (105)
149 2kvi_A Nuclear polyadenylated 97.2 0.00055 1.9E-08 57.0 5.9 75 513-600 8-83 (96)
150 2wbr_A GW182, gawky, LD47780P; 97.2 0.0012 3.9E-08 57.8 8.1 71 517-598 9-79 (89)
151 3md3_A Nuclear and cytoplasmic 97.2 0.00082 2.8E-08 58.6 7.2 104 516-629 1-108 (166)
152 3s7r_A Heterogeneous nuclear r 97.1 0.00077 2.6E-08 54.6 6.0 80 511-596 7-86 (87)
153 1wel_A RNA-binding protein 12; 97.1 0.00021 7.1E-09 62.4 2.7 82 512-599 22-103 (124)
154 2yh0_A Splicing factor U2AF 65 97.1 0.00084 2.9E-08 60.8 6.8 83 513-600 112-194 (198)
155 2adc_A Polypyrimidine tract-bi 97.1 0.003 1E-07 60.1 10.9 78 513-600 32-110 (229)
156 2yh0_A Splicing factor U2AF 65 97.1 0.0019 6.4E-08 58.5 9.0 81 514-600 3-88 (198)
157 3beg_B Splicing factor, argini 97.1 0.001 3.4E-08 57.7 6.9 66 514-591 15-80 (115)
158 3smz_A Protein raver-1, ribonu 97.1 0.00039 1.3E-08 67.3 4.7 84 513-602 182-266 (284)
159 3egn_A RNA-binding protein 40; 97.1 0.0007 2.4E-08 60.1 5.8 88 513-604 43-134 (143)
160 1iqt_A AUF1, heterogeneous nuc 97.1 0.0016 5.6E-08 51.1 7.3 73 518-596 2-74 (75)
161 2cjk_A Nuclear polyadenylated 97.0 0.0014 4.8E-08 57.8 7.4 81 514-600 86-166 (167)
162 1x4b_A Heterogeneous nuclear r 97.0 0.0015 5.3E-08 55.8 7.4 86 513-604 25-110 (116)
163 3smz_A Protein raver-1, ribonu 97.0 0.00094 3.2E-08 64.6 6.7 106 505-630 12-117 (284)
164 2qfj_A FBP-interacting repress 97.0 0.0026 8.8E-08 58.4 9.2 113 509-630 22-147 (216)
165 1x4e_A RNA binding motif, sing 97.0 0.00052 1.8E-08 55.4 4.0 78 513-595 3-80 (85)
166 3ns6_A Eukaryotic translation 97.0 0.00048 1.6E-08 58.2 3.9 81 514-599 5-92 (100)
167 2dnn_A RNA-binding protein 12; 97.0 0.00078 2.7E-08 59.1 5.2 77 513-597 14-90 (109)
168 3nmr_A Cugbp ELAV-like family 97.0 0.0015 5E-08 57.7 7.0 110 515-630 3-117 (175)
169 4f02_A Polyadenylate-binding p 96.9 0.00087 3E-08 63.1 5.6 76 517-599 105-180 (213)
170 3sde_A Paraspeckle component 1 96.9 0.0015 5.1E-08 63.5 7.2 88 511-613 18-105 (261)
171 2g4b_A Splicing factor U2AF 65 96.9 0.0013 4.4E-08 58.3 6.1 78 515-597 94-171 (172)
172 2cqg_A TDP-43, TAR DNA-binding 96.9 0.0019 6.6E-08 53.9 6.9 86 510-602 10-95 (103)
173 1s79_A Lupus LA protein; RRM, 96.9 0.0015 5E-08 56.3 6.1 77 513-596 9-85 (103)
174 3q2s_C Cleavage and polyadenyl 96.9 0.0014 4.6E-08 64.0 6.5 82 514-600 67-150 (229)
175 3ue2_A Poly(U)-binding-splicin 96.9 0.00028 9.5E-09 63.0 1.4 80 514-597 19-106 (118)
176 3pgw_A U1-A; protein-RNA compl 96.8 0.002 7E-08 62.2 7.6 76 514-598 206-281 (282)
177 3pgw_A U1-A; protein-RNA compl 96.8 0.0029 9.8E-08 61.2 8.4 80 513-599 7-89 (282)
178 2lmi_A GRSF-1, G-rich sequence 96.8 0.00094 3.2E-08 56.9 4.2 81 511-598 7-90 (107)
179 1b7f_A Protein (SXL-lethal pro 96.8 0.0016 5.5E-08 57.2 5.7 78 514-596 88-167 (168)
180 2bz2_A Negative elongation fac 96.8 0.0022 7.6E-08 56.6 6.6 77 513-602 37-113 (121)
181 3pgw_S U1-70K; protein-RNA com 96.8 0.0026 8.9E-08 67.9 8.3 83 513-600 100-182 (437)
182 1sjr_A Polypyrimidine tract-bi 96.7 0.0034 1.2E-07 59.9 7.9 78 516-600 47-124 (164)
183 3v4m_A Splicing factor U2AF 65 96.7 0.005 1.7E-07 53.4 8.2 79 516-598 6-95 (105)
184 2hgl_A HNRPF protein, heteroge 96.7 0.0013 4.3E-08 60.1 4.5 79 513-598 42-123 (136)
185 1wf0_A TDP-43, TAR DNA-binding 96.6 0.0026 8.9E-08 51.8 5.6 80 513-604 3-82 (88)
186 3tyt_A Heterogeneous nuclear r 96.6 0.0041 1.4E-07 59.3 7.8 67 514-584 122-190 (205)
187 1wez_A HnRNP H', FTP-3, hetero 96.6 0.0014 4.7E-08 56.1 3.7 80 513-600 13-92 (102)
188 2xs2_A Deleted in azoospermia- 96.6 0.001 3.5E-08 55.5 2.8 81 511-599 5-85 (102)
189 2db1_A Heterogeneous nuclear r 96.6 0.0019 6.5E-08 56.3 4.6 78 512-596 14-94 (118)
190 2dnl_A Cytoplasmic polyadenyla 96.6 0.0025 8.7E-08 54.8 5.3 77 514-598 7-86 (114)
191 2e5i_A Heterogeneous nuclear r 96.6 0.0043 1.5E-07 56.1 7.0 74 518-600 28-102 (124)
192 1l3k_A Heterogeneous nuclear r 96.5 0.0056 1.9E-07 55.3 7.5 109 512-630 10-126 (196)
193 2hgm_A HNRPF protein, heteroge 96.5 0.0023 7.9E-08 57.9 4.9 77 513-597 40-118 (126)
194 1wg5_A Heterogeneous nuclear r 96.5 0.0026 9E-08 53.9 5.0 77 513-599 13-93 (104)
195 2cjk_A Nuclear polyadenylated 96.5 0.0039 1.3E-07 54.9 6.2 96 514-616 2-99 (167)
196 1jmt_A Splicing factor U2AF 35 96.5 0.0066 2.2E-07 52.5 7.3 36 558-596 67-102 (104)
197 1l3k_A Heterogeneous nuclear r 96.5 0.0041 1.4E-07 56.2 6.2 87 513-605 102-188 (196)
198 4f02_A Polyadenylate-binding p 96.4 0.003 1E-07 59.5 5.1 95 516-615 16-114 (213)
199 2e5g_A U6 snRNA-specific termi 96.4 0.0075 2.6E-07 49.8 6.9 74 516-601 9-83 (94)
200 2m2b_A RNA-binding protein 10; 96.3 0.0076 2.6E-07 53.0 7.1 86 514-602 22-110 (131)
201 2hgn_A Heterogeneous nuclear r 96.3 0.0026 8.8E-08 58.3 3.9 84 510-601 41-124 (139)
202 2lcw_A RNA-binding protein FUS 95.2 0.00071 2.4E-08 58.0 0.0 86 514-603 6-98 (116)
203 2cq2_A Hypothetical protein LO 96.1 0.0089 3E-07 53.7 6.6 83 514-604 24-110 (114)
204 1fxl_A Paraneoplastic encephal 96.1 0.01 3.5E-07 51.7 6.4 76 515-595 88-165 (167)
205 3d2w_A TAR DNA-binding protein 96.0 0.014 4.8E-07 48.5 6.7 80 509-600 5-84 (89)
206 3s6e_A RNA-binding protein 39; 96.0 0.02 7E-07 50.8 8.0 98 515-639 7-113 (114)
207 3u1l_A PRE-mRNA-splicing facto 95.9 0.007 2.4E-07 60.6 5.3 81 513-600 132-229 (240)
208 2dha_A FLJ20171 protein; RRM d 95.9 0.0076 2.6E-07 54.0 4.9 74 512-595 20-100 (123)
209 2voo_A Lupus LA protein; RNA-b 95.5 0.015 5.3E-07 55.1 5.8 80 512-598 106-185 (193)
210 1owx_A Lupus LA protein, SS-B, 95.3 0.017 5.9E-07 52.6 4.8 71 511-589 14-86 (121)
211 3zzy_A Polypyrimidine tract-bi 95.1 0.027 9.3E-07 51.6 5.8 84 510-600 23-106 (130)
212 2d9o_A DNAJ (HSP40) homolog, s 94.4 0.091 3.1E-06 45.6 7.1 69 525-605 27-95 (100)
213 3dxb_A Thioredoxin N-terminall 92.3 0.067 2.3E-06 50.5 3.0 81 514-597 123-210 (222)
214 3tht_A Alkylated DNA repair pr 90.8 0.24 8.3E-06 52.0 5.5 82 508-597 11-96 (345)
215 2dnr_A Synaptojanin-1; RRM dom 86.8 1.1 3.9E-05 39.3 6.0 63 527-602 23-88 (91)
216 1ufw_A Synaptojanin 2; RNP dom 81.1 5 0.00017 35.6 7.7 44 540-596 48-91 (95)
217 2j8a_A Histone-lysine N-methyl 79.4 2.4 8.3E-05 39.8 5.4 71 516-595 3-91 (136)
218 2kn4_A Immunoglobulin G-bindin 55.3 7.9 0.00027 34.2 3.3 56 558-615 12-81 (158)
219 1uw4_A UPF3X; nonsense mediate 54.2 17 0.00058 31.6 5.1 63 518-584 4-70 (91)
220 2dhx_A Poly (ADP-ribose) polym 41.7 44 0.0015 30.2 5.8 55 514-578 7-66 (104)
221 2w9r_A YLJA, ATP-dependent CLP 41.6 8.4 0.00029 34.6 1.2 75 518-597 30-104 (108)
222 2i2y_A Fusion protein consists 40.9 14 0.00049 32.5 2.6 55 557-615 11-84 (150)
223 1whv_A Poly(A)-specific ribonu 35.7 40 0.0014 30.3 4.6 57 516-583 17-73 (100)
224 2l08_A Regulator of nonsense t 30.0 26 0.00089 31.1 2.4 64 517-584 11-78 (97)
225 3o1f_A ATP-dependent CLP prote 29.9 17 0.00057 31.2 1.1 74 518-596 5-78 (81)
226 3ctr_A Poly(A)-specific ribonu 22.1 46 0.0016 30.0 2.5 58 516-584 7-64 (101)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.95 E-value=1.1e-28 Score=233.41 Aligned_cols=137 Identities=19% Similarity=0.334 Sum_probs=97.6
Q ss_pred cCCCCCCCcceeEEEEEECCEEEEeCceEEEeeCCC-CCCeEEEEEEEEeeCCCceEEEEEeecChhcccccCCCccCCC
Q 005739 18 RGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGD-AEPHVGKLIKIWENADKAKKVKLLWFFRPSDISNFLGNVQTLE 96 (680)
Q Consensus 18 rGvgGKkkd~~fYeSft~dG~tYrLGDCVyVkseg~-~ePYIGRIvemWE~~DGek~VkVqWFyRPEEI~~~lg~~~~~p 96 (680)
.|.+++ ++.||+++.+||.+|++||||||.+++. .+||||+|.+||++.+|+++|+|+|||||+||....+ +.+++
T Consensus 7 ~~~~~~--~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~-~~~~~ 83 (174)
T 1w4s_A 7 AGLSSL--HRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLAT-RKFLE 83 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTT-CEEET
T ss_pred ccccCC--CcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccC-CcCCC
Confidence 344444 4489999999999999999999999874 6899999999999999999999999999999965333 45789
Q ss_pred CceEEecCCCCcccccCccceeecceEEEecCCCcCCCCCCCccCCCCcEEEEeeeeCcceEEEehhh
Q 005739 97 NELILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPSDEELQISDFIFCRTFDVGLRKVLDKID 164 (680)
Q Consensus 97 NELFLSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rPS~~ei~~aDFYf~R~YDv~t~RivD~f~ 164 (680)
||||+|. +.|+||+++|.|||.|++...+. ..+|.+. .....|||++.||+.+++|.....
T Consensus 84 ~EvF~S~-----~~d~~~~~~I~gkC~V~~~~~~~-~~~p~~~-~~~dvF~c~~~Yd~~~~~f~~i~~ 144 (174)
T 1w4s_A 84 KEVFKSD-----YYNKVPVSKILGKCVVMFVKEYF-KLCPENF-RDEDVYVCESRYSAKTKSFKKIKL 144 (174)
T ss_dssp TEEEEEE-----EEEEEEGGGEEEEEEEEEHHHHT-TEEETTC-CGGGEEEEEEEEETTTTEEEECSS
T ss_pred CeeEEeC-----CcceecHHHeeeeEEEEECchhh-hcCcCCC-CCCCEEEEeEEEccccCeEccCcc
Confidence 9999997 59999999999999999875443 3334321 123459999999999999986544
No 2
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.88 E-value=6.8e-23 Score=242.01 Aligned_cols=144 Identities=16% Similarity=0.265 Sum_probs=112.6
Q ss_pred cceeeeccccCCCCCCCcceeEEEEEECCEEEEeCceEEEeeCCC-CCCeEEEEEEEEeeCCCceEEEEEeecChhcccc
Q 005739 9 NLDFKWGKKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGD-AEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87 (680)
Q Consensus 9 ~~~fKWGkkrGvgGKkkd~~fYeSft~dG~tYrLGDCVyVkseg~-~ePYIGRIvemWE~~DGek~VkVqWFyRPEEI~~ 87 (680)
...|+|... ...+. ...+||+++.++|.+|++||||||.++++ .++|||||++||++.+|+++||++|||||+||
T Consensus 441 ~~~i~W~G~-p~k~~-~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ET-- 516 (1330)
T 3av4_A 441 KDRISWLGQ-PMKIE-ENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDT-- 516 (1330)
T ss_dssp CSCEEEESS-CSCCC---CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGS--
T ss_pred cCCceEccC-ceecc-CCceeeeEEEECCEEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHc--
Confidence 567999654 22121 12499999999999999999999988764 46899999999999999999999999999998
Q ss_pred cCCCccCCCCceEEecCCCCcccccCccceeecceEEEecCC--CcCCC---CCCC---ccCCCCcEEEEeeeeCcceEE
Q 005739 88 FLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSK--DARNP---QPSD---EELQISDFIFCRTFDVGLRKV 159 (680)
Q Consensus 88 ~lg~~~~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsisk--D~rn~---rPS~---~ei~~aDFYf~R~YDv~t~Ri 159 (680)
++++ .++++|||+|. ++|+|||+||.|||+|++++. +|... .|.. .....++|||++.||+.+++|
T Consensus 517 vlg~-~~~~rElFlS~-----~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F 590 (1330)
T 3av4_A 517 VLGA-TSDPLELFLVG-----ECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARF 590 (1330)
T ss_dssp TTGG-GSCTTEEEEEE-----EEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEE
T ss_pred cccc-ccCCCeEEEec-----ccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCcc
Confidence 4564 69999999997 599999999999999998644 34211 1211 113456899999999999999
Q ss_pred Eeh
Q 005739 160 LDK 162 (680)
Q Consensus 160 vD~ 162 (680)
.+.
T Consensus 591 ~~l 593 (1330)
T 3av4_A 591 ESP 593 (1330)
T ss_dssp ECC
T ss_pred CCc
Confidence 883
No 3
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.88 E-value=1.9e-22 Score=233.25 Aligned_cols=143 Identities=15% Similarity=0.248 Sum_probs=115.3
Q ss_pred cceeeeccccCCCCCCCcceeEEEEEECCEEEEeCceEEEeeCCC-CCCeEEEEEEEEeeCCCceEEEEEeecChhcccc
Q 005739 9 NLDFKWGKKRGIGGKKKDVQFYQSFTYDGVEYTLYDCVYLYKEGD-AEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN 87 (680)
Q Consensus 9 ~~~fKWGkkrGvgGKkkd~~fYeSft~dG~tYrLGDCVyVkseg~-~ePYIGRIvemWE~~DGek~VkVqWFyRPEEI~~ 87 (680)
...++|....- .++. ...||+++.++|.+|++||||||.+++. .+||||+|++|||+.+|+++||++|||||+|+
T Consensus 130 ~~~~~W~G~p~-k~~~-~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET-- 205 (1002)
T 3swr_A 130 KNRISWVGEAV-KTDG-KKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDT-- 205 (1002)
T ss_dssp CSCEEEESCCC-CCBT-TEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGS--
T ss_pred cccccccCccc-cccc-CceeeeEEEECCEEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhc--
Confidence 35788954322 2222 2399999999999999999999998775 46799999999999999999999999999998
Q ss_pred cCCCccCCCCceEEecCCCCcccccCccceeecceEEEecCC--CcC---C---CCCCCccCCCCcEEEEeeeeCcceEE
Q 005739 88 FLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSK--DAR---N---PQPSDEELQISDFIFCRTFDVGLRKV 159 (680)
Q Consensus 88 ~lg~~~~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsisk--D~r---n---~rPS~~ei~~aDFYf~R~YDv~t~Ri 159 (680)
+|++ .++++|||||+ ++|++|+++|.|||+|+++.. +|. + ..+.. .....+|||...||+.+++|
T Consensus 206 ~lg~-~~~~~ElFlsd-----~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~-~~~~~~ffc~~~Y~~~~~~F 278 (1002)
T 3swr_A 206 VLGA-TSDPLELFLVD-----ECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLE-GDDGKTYFYQLWYDQDYARF 278 (1002)
T ss_dssp TTGG-GSCTTEEEEEE-----EEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCC-CCCCTSEEEEEEEETTTTEE
T ss_pred cccc-CCCCCceEeec-----cccCCcHHHhceeeEEEEccCCcchhhhcccccccccc-cCCCCeEEEEEEECCCCCcc
Confidence 5675 59999999998 489999999999999998633 442 1 11111 12356999999999999999
Q ss_pred Eeh
Q 005739 160 LDK 162 (680)
Q Consensus 160 vD~ 162 (680)
.+.
T Consensus 279 ~~l 281 (1002)
T 3swr_A 279 ESP 281 (1002)
T ss_dssp ECC
T ss_pred cCC
Confidence 985
No 4
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.86 E-value=3e-22 Score=222.90 Aligned_cols=131 Identities=21% Similarity=0.346 Sum_probs=106.8
Q ss_pred ceeEEEEEECCEEEEeCceEEEeeCCCCCCeEEEEEEEEeeCCCceEEEEEeecChhcccc------cCCCccCCCCceE
Q 005739 27 VQFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENADKAKKVKLLWFFRPSDISN------FLGNVQTLENELI 100 (680)
Q Consensus 27 ~~fYeSft~dG~tYrLGDCVyVkseg~~ePYIGRIvemWE~~DGek~VkVqWFyRPEEI~~------~lg~~~~~pNELF 100 (680)
++||.++.++|++|+|||||||+++...++|||+|++|||+.+|+.+|+|+|||||+||.- ....+.++++|||
T Consensus 45 ~~~~~~~~~~~~~~~~~d~~~v~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~ 124 (784)
T 4ft4_B 45 RCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVF 124 (784)
T ss_dssp EEECSEEEETTEEEETTCEEEECCSTTSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEE
T ss_pred ceeeeeeeECCEEEeCCCeEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccceEE
Confidence 3899999999999999999999997667889999999999999999999999999999732 1123457899999
Q ss_pred EecCCCCcccccCccceeecceEEEecCCCcCCCCCCCccCCCCcEEEEeeeeCcceEEEehh
Q 005739 101 LACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPSDEELQISDFIFCRTFDVGLRKVLDKI 163 (680)
Q Consensus 101 LSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rPS~~ei~~aDFYf~R~YDv~t~RivD~f 163 (680)
+|. .+++||++||.|||+|++++... +..........|+|||++.|...+.++...-
T Consensus 125 ~s~-----~~~~~~~~~i~~k~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 181 (784)
T 4ft4_B 125 LSE-----EKNDNVLDCIISKVKIVHVDPNM-DPKAKAQLIESCDLYYDMSYSVAYSTFANIS 181 (784)
T ss_dssp EEE-----EEEEEEGGGEEEECCEEECCTTS-CHHHHHHHHHHCSEEESEEEETGGGEEEEC-
T ss_pred EeC-----cEEEechHHeeeeEEEEeeCccc-cchhhhhccCCcceEeccccCccccCccCCC
Confidence 997 48999999999999999865432 1111011234789999999999999987643
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.71 E-value=1.8e-17 Score=191.97 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=102.0
Q ss_pred ceeEEEEEECCEEEEeCceEEEeeCC------------------------------------------CCCCeEEEEEEE
Q 005739 27 VQFYQSFTYDGVEYTLYDCVYLYKEG------------------------------------------DAEPHVGKLIKI 64 (680)
Q Consensus 27 ~~fYeSft~dG~tYrLGDCVyVkseg------------------------------------------~~ePYIGRIvem 64 (680)
+.+|+++.++|.+|++||||||.++. ..|.+||+|++|
T Consensus 322 ~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~i 401 (1002)
T 3swr_A 322 RVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEI 401 (1002)
T ss_dssp CEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEEE
T ss_pred cEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEeEE
Confidence 48999999999999999999998822 124579999999
Q ss_pred EeeCCCc-------eEEEEEeecChhcccccCC-CccCCCCceEEecCCCCcccccCccceeecceEEEecCCCcCCCCC
Q 005739 65 WENADKA-------KKVKLLWFFRPSDISNFLG-NVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQP 136 (680)
Q Consensus 65 WE~~DGe-------k~VkVqWFyRPEEI~~~lg-~~~~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rP 136 (680)
|.+..+. .+|+|.|||||+||+.-.. .+..+.||||+|. +.++.|+++|.|||.|++.. +..+..+
T Consensus 402 ~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~-----~~~~~~~~~i~GkC~V~~~~-d~~~~~~ 475 (1002)
T 3swr_A 402 FCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSD-----EEAVVDFKAVQGRCTVEYGE-DLPECVQ 475 (1002)
T ss_dssp EECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECC-----CEEEEEGGGCCEEEEEEEGG-GCSSCHH
T ss_pred EecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEec-----ceeccCHHHcceEEEEEEec-cccccch
Confidence 9876554 8999999999999964222 2345789999997 48999999999999999863 3222211
Q ss_pred CCccCCCCcEEEEeeeeCcceEEEehhhhhh
Q 005739 137 SDEELQISDFIFCRTFDVGLRKVLDKIDEKI 167 (680)
Q Consensus 137 S~~ei~~aDFYf~R~YDv~t~RivD~f~dkI 167 (680)
.-......+|||+..||+.+..|.+. |..|
T Consensus 476 ~~~~~~p~~fyf~~~Yd~~~~~f~~~-p~~~ 505 (1002)
T 3swr_A 476 VYSMGGPNRFYFLEAYNAKSKSFEDP-PNHA 505 (1002)
T ss_dssp HHHHTSSSEEEEEEEEETTTTEEECC-CSTT
T ss_pred hhccCCCCeEEEEEEEeCCCCeeecC-cccc
Confidence 00011237999999999999998775 5444
No 6
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.70 E-value=3.3e-16 Score=149.41 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=104.2
Q ss_pred ceeeeccccCCCCCCCcceeEEEEEE--CC---EEEEeCceEEEeeCCCCCCeEEEEEEEEeeC---CCceEEEEEeecC
Q 005739 10 LDFKWGKKRGIGGKKKDVQFYQSFTY--DG---VEYTLYDCVYLYKEGDAEPHVGKLIKIWENA---DKAKKVKLLWFFR 81 (680)
Q Consensus 10 ~~fKWGkkrGvgGKkkd~~fYeSft~--dG---~tYrLGDCVyVkseg~~ePYIGRIvemWE~~---DGek~VkVqWFyR 81 (680)
..|.|=.+.=.-. +-..++|.++.+ +| .++++||||+|.+++...||||+|.+|+|+. ...+.++||||+|
T Consensus 5 ~~ysW~g~~l~dr-kl~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R 83 (163)
T 4dov_A 5 QTFSWVGRPLPNR-KQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVR 83 (163)
T ss_dssp CEEEEESCCCCCC-CTTEEEESEEEEECTTSCEEEEETTCEEEECCSSSSCCEEEEEEEEEEETTSSSCEEEEEEEEEEE
T ss_pred EEEEEeccCcCCC-cccceeeeEEEEecCCCCCeEEeeCCEEEEeCCcccCChhHHHHHHHhccccCCCceEEEEEeeec
Confidence 5789933311211 223589999998 56 7999999999998887889999999999962 2468899999999
Q ss_pred hhcccc---cCCCccCCCCceEEecCCCCcccccCccceeecceEEEecCCCcCCCCCCCccCCCCcEEEEeeeeCcceE
Q 005739 82 PSDISN---FLGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPSDEELQISDFIFCRTFDVGLRK 158 (680)
Q Consensus 82 PEEI~~---~lg~~~~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rPS~~ei~~aDFYf~R~YDv~t~R 158 (680)
|+||+. .+.++.++.+|||+.++. +..++-++++|.|+|.|++...+.. -|.+ .....+||.+-.+|...-+
T Consensus 84 ~~EiP~~k~~l~g~~~~~qEIF~~d~~--~~d~~I~aeTIi~~c~V~~~~~~e~--~p~~-~~~e~t~FvklsWd~k~f~ 158 (163)
T 4dov_A 84 FLEIPVSKRHLLGRSPPAQEIFWYDCS--DWDNKINVETIIGPVQVVALAPEEV--IPVD-QKSEETLFVKLSWNKKDFA 158 (163)
T ss_dssp GGGSCTTTGGGGCSCCCTTEEEEECCS--CSCCEEEGGGEEEEEEEEECCTTCC--CCSS-CCCCSEEEEEEEECSSCEE
T ss_pred hhhccccchhhccCCCCCCeEEEecCC--CCcccccHHHeeeceEEEEcCCccc--cCCC-cccceEEEEEEEecCCcce
Confidence 999853 122345778999998762 2234558999999999998755542 2322 3346689998888876544
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.69 E-value=1.8e-17 Score=196.21 Aligned_cols=135 Identities=22% Similarity=0.317 Sum_probs=105.3
Q ss_pred ceeEEEEEECCEEEEeCceEEEeeCC-----------------------------------------CCCC-eEEEEEEE
Q 005739 27 VQFYQSFTYDGVEYTLYDCVYLYKEG-----------------------------------------DAEP-HVGKLIKI 64 (680)
Q Consensus 27 ~~fYeSft~dG~tYrLGDCVyVkseg-----------------------------------------~~eP-YIGRIvem 64 (680)
+.||++|+++|++|++||||||.++. ...| +||+|.+|
T Consensus 634 ~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~eI 713 (1330)
T 3av4_A 634 RVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEI 713 (1330)
T ss_dssp SEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEEC
T ss_pred ceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEEEE
Confidence 48999999999999999999997651 1244 79999999
Q ss_pred EeeCC------CceEEEEEeecChhccccc-CCCccCCCCceEEecCCCCcccccCccceeecceEEEecCCCcCCCCCC
Q 005739 65 WENAD------KAKKVKLLWFFRPSDISNF-LGNVQTLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPS 137 (680)
Q Consensus 65 WE~~D------Gek~VkVqWFyRPEEI~~~-lg~~~~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rPS 137 (680)
|.+.+ +..+|+|+|||||+||... .+.+.++.||||+|. +.+++|+++|.|||.|+++.......+|.
T Consensus 714 ~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~-----~~~~vp~~~I~GKC~V~~~~d~~~~i~~y 788 (1330)
T 3av4_A 714 HCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSD-----EEAVVNFSDVQGRCTVEYGEDLLESIQDY 788 (1330)
T ss_dssp CCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEE-----EEEEEEGGGCCEEEEEEESTTCSSCHHHH
T ss_pred EecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeec-----cceecCHHHcCceEEEEeccccccccccc
Confidence 98754 5789999999999998653 234467899999997 48999999999999999864433211111
Q ss_pred CccCCCCcEEEEeeeeCcceEEEehhhhhhc
Q 005739 138 DEELQISDFIFCRTFDVGLRKVLDKIDEKIA 168 (680)
Q Consensus 138 ~~ei~~aDFYf~R~YDv~t~RivD~f~dkI~ 168 (680)
. .....+|||.+.||+.+..|. .+|..+.
T Consensus 789 ~-~~g~d~Fy~~~~Yd~~~k~~~-~~P~~~~ 817 (1330)
T 3av4_A 789 S-QGGPDRFYFLEAYNSKTKNFE-DPPNHAR 817 (1330)
T ss_dssp H-HTSTTEEEESCEEETTTTEEE-CCCGGGC
T ss_pred c-cCCCCeEEEEEEecccCCeec-cCchHhh
Confidence 1 112468999999999999986 5677764
No 8
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.36 E-value=2.6e-12 Score=124.97 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=120.6
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeee-cCCceee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL-SNGRPLL 593 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~l-s~gRpl~ 593 (680)
++-|++.||+++.|..++.+++. .|-.-..++++... +..+.|-|||-|.+.++|..||..|+.|++++ ..||||+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVDD--RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred CCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeCC--CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 67799999999999998888874 45556677777552 44567899999999999999999999998865 6799999
Q ss_pred eecCCCccCCCCCceeeeeeehhHHHHHHHHHHhhhcccCCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 005739 594 GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKL 673 (680)
Q Consensus 594 ~s~~~~~~p~k~~~f~GH~~i~k~~~~~qremr~avsTSHcSQPN~iEydma~eW~l~qe~~~~~~~~l~~~~~~el~kl 673 (680)
.....+..+... .++-.+.+. +.-.++--+..++++|++.||++++.|..+++...+.+..|.+++.+|..||
T Consensus 173 v~~~~~~~~~~~---~~~~~~~~~----~~~~~~r~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 245 (261)
T 3sde_A 173 VEPMEQFDDEDG---LPEKLMQKT----QQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKL 245 (261)
T ss_dssp EEECCCEESSSC---CCGGGSCCC----HHHHHHHTSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccccCccCC---Ccchhhhcc----hhhhhhccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877643322 122222222 2223334677899999999999999999999999999999999999999999
Q ss_pred HHhh
Q 005739 674 KVKL 677 (680)
Q Consensus 674 ~~~l 677 (680)
.+.+
T Consensus 246 ~~~~ 249 (261)
T 3sde_A 246 EAEM 249 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 9
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=98.82 E-value=4e-09 Score=105.72 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=84.8
Q ss_pred eeEEEEEECCEEEEeCceEEEeeCCCCCCeEEEEEEEEeeCC--CceEEEEEeecChhcccc------cCCC--------
Q 005739 28 QFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENAD--KAKKVKLLWFFRPSDISN------FLGN-------- 91 (680)
Q Consensus 28 ~fYeSft~dG~tYrLGDCVyVkseg~~ePYIGRIvemWE~~D--Gek~VkVqWFyRPEEI~~------~lg~-------- 91 (680)
..+-.-.-||.++++||+|.|+.+. ...|++-|+..-.-.+ .-.-+.|+||+|..|+.+ ++..
T Consensus 41 ~i~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~ 119 (232)
T 2fl7_A 41 NVFLKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPL 119 (232)
T ss_dssp EEEEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCH
T ss_pred eEEEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccch
Confidence 3333334589999999999998764 4556555554444222 345778899999999865 2222
Q ss_pred cc--------CCCCceEEecCCCCcccccCccceeecceEEEecCCCcCCCCCCCccCCCCcEEEEeeeeCcceEEE
Q 005739 92 VQ--------TLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPSDEELQISDFIFCRTFDVGLRKVL 160 (680)
Q Consensus 92 ~~--------~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rPS~~ei~~aDFYf~R~YDv~t~Riv 160 (680)
.. ...|||||+.+ -+..-+.+|+++|+|++..+..-... + .....+|||++.||+.-..|+
T Consensus 120 ~~~~~~~~~~~~~nELflTa~-----l~eI~l~diI~~anVls~~Ef~~l~~--d-~~~~~tFf~R~~cd~~~~~f~ 188 (232)
T 2fl7_A 120 EFYKDKFFNEVNKSELYLTAE-----LSEIWLKDFIAVGQILPESQWNDSSI--D-KIEDRDFLVRYACEPTAEKFV 188 (232)
T ss_dssp HHHHHHHHHHSCTTEEEEEEE-----EEEECGGGEEEECEEECTTTC----------CTTTEEEEEEECCTTSCSCE
T ss_pred hhhhhhhhcccccceEEEecc-----HHHHHHHhhhhheEeccHHHHHHhcc--c-ccCCceEEEEEEEcCCcCccc
Confidence 11 57899999984 78899999999999997544321111 1 334679999999999866676
No 10
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=98.78 E-value=2.5e-09 Score=107.49 Aligned_cols=124 Identities=19% Similarity=0.097 Sum_probs=86.4
Q ss_pred eeEEEEEECCEEEEeCceEEEeeCCCCCCeEEEEEEEEeeCC--CceEEEEEeecChhcccc------cCCCc-------
Q 005739 28 QFYQSFTYDGVEYTLYDCVYLYKEGDAEPHVGKLIKIWENAD--KAKKVKLLWFFRPSDISN------FLGNV------- 92 (680)
Q Consensus 28 ~fYeSft~dG~tYrLGDCVyVkseg~~ePYIGRIvemWE~~D--Gek~VkVqWFyRPEEI~~------~lg~~------- 92 (680)
..+-.-.-||.++++||+|+|+.+. ...|++-|+..-.-.+ .-.-+.|+||+|..|+.+ ++...
T Consensus 41 ~i~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~ 119 (238)
T 1m4z_A 41 EHYLKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPL 119 (238)
T ss_dssp EEEEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCH
T ss_pred cEEEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccch
Confidence 3333334589999999999998764 4556555444443333 345668899999999865 22221
Q ss_pred -c--------CCCCceEEecCCCCcccccCccceeecceEEEecCCCcCCCCCCCccCCCCcEEEEeeeeCcceEEE
Q 005739 93 -Q--------TLENELILACGEGVGLTNINPLEAIAGKCNVVCTSKDARNPQPSDEELQISDFIFCRTFDVGLRKVL 160 (680)
Q Consensus 93 -~--------~~pNELFLSsgeg~g~~DdNPLe~I~GKC~VVsiskD~rn~rPS~~ei~~aDFYf~R~YDv~t~Riv 160 (680)
. ...|||||+.+ -+..-+.+|+++|+|++..+.. .. ..+ ...+.+|||++.||+.-..|+
T Consensus 120 ~~~~~~~~~~~~~nELflTa~-----l~eI~l~diI~~anVls~~Ef~-~i-~~d-~~~~~tFf~R~~cd~~~~~f~ 188 (238)
T 1m4z_A 120 NYYNKLFSETANKNELYLTAE-----LAELQLFNFIRVANVMDGSKWE-VL-KGN-VDPERDFTVRYICEPTGEKFV 188 (238)
T ss_dssp HHHHHHHHHHSCTTEEEEEEE-----EEEECGGGEEEEEEEECHHHHH-HH-GGG-CCTTTEEEEEEECCTTSCCCE
T ss_pred hhhhhhhhcccccceEEEecc-----HHHHhHHhhhhheEeccHHHHh-hh-ccc-cccCceEEEEEEEcCCcCccc
Confidence 1 57899999984 7889999999999999753332 11 111 245679999999999866676
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.39 E-value=5.2e-07 Score=77.00 Aligned_cols=94 Identities=22% Similarity=0.222 Sum_probs=66.4
Q ss_pred CChHHHHHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc
Q 005739 502 LPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 581 (680)
Q Consensus 502 ~Pwee~~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e 581 (680)
+++....+.-+-|||-|++.||.++.|..++.+++.. |-+-..++++.. ..+..+-|-|||-|.+.+.|+.||..|+.
T Consensus 6 ~~~~~~~en~~~~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 6 IHHHHHHENLYFQGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRD-KVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp ----------CCCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC-SSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccccCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeec-CCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 4556666777889999999999999999998887643 444445566532 22334457899999999999999999987
Q ss_pred ceeeecCCceeeeecCCCc
Q 005739 582 GCLLLSNGRPLLGSIGTPC 600 (680)
Q Consensus 582 gcl~ls~gRpl~~s~~~~~ 600 (680)
--| +||+|.-+++.|+
T Consensus 84 ~~~---~gr~l~V~~AkPS 99 (99)
T 4fxv_A 84 LRL---QSKTIKVSYARPS 99 (99)
T ss_dssp CEE---TTEECEEEECCBC
T ss_pred CEE---CCEEEEEEEeeCC
Confidence 655 8999999998874
No 12
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=8.5e-06 Score=69.34 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=77.5
Q ss_pred cCCChHHHHHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhh
Q 005739 500 KELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL 579 (680)
Q Consensus 500 k~~Pwee~~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl 579 (680)
+.+++++.........+-|++.||++..|..++.+++-. |-.--..+|+.. -|-|||-|.+.++|+.||..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 10 KQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV 81 (109)
T ss_dssp CSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCccccccCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHc
Confidence 457888888888889999999999999999999988754 444445566643 799999999999999999999
Q ss_pred ccceeeecCCceeeeecCCCccCCC
Q 005739 580 EEGCLLLSNGRPLLGSIGTPCFTGK 604 (680)
Q Consensus 580 ~egcl~ls~gRpl~~s~~~~~~p~k 604 (680)
+.--| +||+|...++.+.....
T Consensus 82 ~g~~~---~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 82 NGTTI---EGHVVKCYWGKESPDMT 103 (109)
T ss_dssp TTCEE---TTEECEEECCCCCCSSC
T ss_pred CCCEE---CCcEEEEEecCCCCCCC
Confidence 87544 79999999998765544
No 13
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.06 E-value=4.7e-06 Score=67.34 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=64.0
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
+.+-|++.||.+..|..++.+++.. |-.-...+++....-.-.+.|-|||-|.+.++|+.|+..|+..-| +||+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEE
Confidence 3577899999999999999887754 333334444432221112678999999999999999999998765 899999
Q ss_pred eecCCCccC
Q 005739 594 GSIGTPCFT 602 (680)
Q Consensus 594 ~s~~~~~~p 602 (680)
-+++.|.-|
T Consensus 79 v~~a~~~~~ 87 (88)
T 4a8x_A 79 ATAVLAPWP 87 (88)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 999877654
No 14
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=2e-05 Score=66.50 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
.+-|++.||.+..|..++.+++-..-..-..++++.+...+-..-|-|||-|.+.+.|+.||..|+.|...+ +||+|.-
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~-~g~~l~V 86 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQIAV 86 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCCEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee-cCCeEEE
Confidence 567889999999999999888766432244456664555555778999999999999999999998664444 8999999
Q ss_pred ecCCCccC
Q 005739 595 SIGTPCFT 602 (680)
Q Consensus 595 s~~~~~~p 602 (680)
.++.|...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99877544
No 15
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.02 E-value=8.1e-06 Score=67.43 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=67.1
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++...+++.|.+--...-|.-. .+..+.|-|||-|.+.+.|+.|+..|+...| +||+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPF---YDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---CCcEE
Confidence 4578899999999999999998899999875443332211 1234568999999999999999999998665 89999
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
..+++.+.
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99988763
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=2.7e-05 Score=64.15 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=65.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccc-eeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSA-KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~A-kmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.++-|++.||++..|..++.+++.. |-.-... ++ .+...+-.+.|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 4678999999999998888777643 2222233 33 33334455678999999999999999999998765 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
...++.|..+..
T Consensus 79 ~v~~a~~~~~~~ 90 (96)
T 1x5t_A 79 TVSYAFKKDSKG 90 (96)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEEecccCCCC
Confidence 999998776554
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.98 E-value=2.8e-05 Score=65.06 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=63.2
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
+.|+|.||.++.|..++.+++-..-.+--.++++ +...+...-|-|||-|.+.+.|+.||..++.+.. -+||+|.-.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~-~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--~~gr~i~V~ 78 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM-RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--ILGQKVSMH 78 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS-SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--ETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE-ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--ECCEEEEEE
Confidence 4789999999999999998876532233344554 3334456678999999999999999998877643 289999999
Q ss_pred cCCCc
Q 005739 596 IGTPC 600 (680)
Q Consensus 596 ~~~~~ 600 (680)
++.|.
T Consensus 79 ~a~~~ 83 (91)
T 2lxi_A 79 YSDPK 83 (91)
T ss_dssp CCCSC
T ss_pred EcCCC
Confidence 98764
No 18
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=6.6e-06 Score=69.04 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=69.1
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
...++-|+|.||.+..|..+|.+++.. |-.-...+|+.. +..+-|-|||.|.+.++|+.||..|+..-| +||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcE
Confidence 346788999999999999888777642 334445566654 456678999999999999999999997654 8999
Q ss_pred eeeecCCCccCCCC
Q 005739 592 LLGSIGTPCFTGKQ 605 (680)
Q Consensus 592 l~~s~~~~~~p~k~ 605 (680)
|...++.|..+..+
T Consensus 85 l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 85 LYVALAQRKEERQS 98 (103)
T ss_dssp CEEEECSSCCCCCC
T ss_pred EEEEEecccccCCC
Confidence 99999988766554
No 19
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.95 E-value=1.8e-05 Score=64.21 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=66.3
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.++.|..++.+++.. |-.-...+++. ...+..+.|-|||-|.+.++|+.|+ .|+.-.| +||+|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILC-DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEE-SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEe-cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEE
Confidence 34678999999999999998887653 33334455443 2334455789999999999999999 9988765 89999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
.-..+.+..||
T Consensus 78 ~V~~a~~~~pg 88 (89)
T 3ucg_A 78 KVIPKRTNRPG 88 (89)
T ss_dssp EEEETTTTSCC
T ss_pred EEEEccCCCCC
Confidence 99999888776
No 20
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.95 E-value=1.7e-05 Score=69.90 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=66.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.-.++|++.||.+..|..|+.+|+.. |-+-..++|+. .-|+|||-|.+.++|..||..|+..-+++ +||||
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~-------~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP-------KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc-------CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEE
Confidence 35789999999999999999888854 67777788874 35999999999999999999999765544 89999
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
.-+++.+.
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 98887653
No 21
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.5e-05 Score=66.70 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=70.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccce-eeecCCce
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC-LLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egc-l~ls~gRp 591 (680)
..++-|++.||.+..|..++.+++-..|-.-...+++... +..+-|-|||-|.+.+.|+.||..|+... | +||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~ 81 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKP 81 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCccc---CCEe
Confidence 3467789999999999999988887656656667776543 45567899999999999999999999765 4 7999
Q ss_pred eeeecCCCccCCCC
Q 005739 592 LLGSIGTPCFTGKQ 605 (680)
Q Consensus 592 l~~s~~~~~~p~k~ 605 (680)
|.-.++.+....+.
T Consensus 82 l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 82 VRLSVAIPKASRVK 95 (104)
T ss_dssp CCCCBCCCCCSCCC
T ss_pred EEEEEccCCCcCCC
Confidence 99999877665543
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=3e-05 Score=63.74 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=67.0
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||.+..|..++.+++-. |-.-...+++.. ..+.-+-|-|||-|.+.+.|+.||..|+.-.| +||+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKD-SDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECC-SSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEEE
Confidence 4678999999999999998877632 333334444432 22444578999999999999999999998655 899999
Q ss_pred eecCCCccCCCCC
Q 005739 594 GSIGTPCFTGKQS 606 (680)
Q Consensus 594 ~s~~~~~~p~k~~ 606 (680)
-.++.+..++...
T Consensus 79 V~~a~~~~~~~~~ 91 (95)
T 2dnz_A 79 VGHVTERLDGGSG 91 (95)
T ss_dssp EEESSCCCCCCCC
T ss_pred EEEcccccCCCCC
Confidence 9999887766543
No 23
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.3e-05 Score=65.53 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=68.5
Q ss_pred ChHHHHHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccc
Q 005739 503 PWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 582 (680)
Q Consensus 503 Pwee~~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~eg 582 (680)
..++.++.+...++-|++.||++..|..++.+++-. |-.-...+|+ .+-|-|||-|.+.+.|+.||..|+.-
T Consensus 15 ~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 15 AVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp HHHHHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred hhhhhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 356667777777899999999999999988887643 3444455665 45799999999999999999999965
Q ss_pred eeeecCCceeeeecCCC
Q 005739 583 CLLLSNGRPLLGSIGTP 599 (680)
Q Consensus 583 cl~ls~gRpl~~s~~~~ 599 (680)
-| +||+|..+++.|
T Consensus 87 ~~---~g~~l~V~~a~~ 100 (101)
T 2la4_A 87 PF---QGRNLRTGWGKE 100 (101)
T ss_dssp EE---TTEECCCCBCCC
T ss_pred eE---CCeEEEEEeccC
Confidence 44 799999888765
No 24
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=5.4e-05 Score=63.45 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=68.5
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..++.+++-. |-.-...+|+....- +-|-|||-|.+.+.|+.||..|+..-| +||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTS---NDPYCFVEFYEHRDAAAALAAMNGRKI---LGKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCCS---SCCEEEEEESSHHHHHHHHHHHTTEEE---TTEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCCC---CCCEEEEEECCHHHHHHHHHHhCCCCc---CCCe
Confidence 345788999999999999999888743 444445666665322 468999999999999999999997765 7999
Q ss_pred eeeecCCCccCCCC
Q 005739 592 LLGSIGTPCFTGKQ 605 (680)
Q Consensus 592 l~~s~~~~~~p~k~ 605 (680)
|...++.+....++
T Consensus 85 l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 85 VKVNWATTPSSQKS 98 (103)
T ss_dssp EEEEECCCTTCCCC
T ss_pred EEEEECCCCccccc
Confidence 99999987655443
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=3.9e-05 Score=64.41 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=66.6
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|+|.||.+..|..+|.+++-. |-.-...+|+.....+.-+-|-|||-|.+.+.|+.||..|+.|.. -+||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH--LYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB--SSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe--ECCCE
Confidence 345678999999999999998877643 333334455443234556679999999999999999999943433 26999
Q ss_pred eeeecCCCccCCC
Q 005739 592 LLGSIGTPCFTGK 604 (680)
Q Consensus 592 l~~s~~~~~~p~k 604 (680)
|.-.++.+..+..
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998765544
No 26
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=5.3e-05 Score=63.35 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=65.7
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhcc---ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~---c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
...++-|++.||++..|..+++++++..|.+- ..++++..... -|-|||-|.+.+.|+.||..|+..-| +
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~----rg~afV~f~~~~~A~~Ai~~l~g~~~---~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY----QLKAVVQMENLQDAIGAVNSLHRYKI---G 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST----TCCEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC----CeEEEEEECCHHHHHHHHHHhCCCEE---C
Confidence 44677899999999999999998888877743 34455432211 67899999999999999999997644 7
Q ss_pred CceeeeecCCCcc
Q 005739 589 GRPLLGSIGTPCF 601 (680)
Q Consensus 589 gRpl~~s~~~~~~ 601 (680)
||+|.-+++.|..
T Consensus 79 gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 79 SKKILVSLATGAS 91 (96)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEEcCCCC
Confidence 9999999987653
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.86 E-value=3.8e-05 Score=65.60 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=68.8
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|+|.||++..|..+|.+++- .|-.-...+|+... .+--+-|-|||-|.+.++|+.||..|+.-.| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDM-ATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQI 87 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 4578899999999999998877764 23333344554321 2334568999999999999999999997544 89999
Q ss_pred eeecCCCccCCCCCce
Q 005739 593 LGSIGTPCFTGKQSKF 608 (680)
Q Consensus 593 ~~s~~~~~~p~k~~~f 608 (680)
.-.++.+..+.+.+.+
T Consensus 88 ~V~~a~~~~~~~~~~~ 103 (115)
T 2dgo_A 88 RTNWATRKPPAPKSTY 103 (115)
T ss_dssp EEEESSCCCCCSCCCC
T ss_pred EEEEccCCCCCCcccc
Confidence 9999988877665543
No 28
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.86 E-value=2.9e-05 Score=63.89 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=62.1
Q ss_pred hhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 510 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
.+.+..+-|++.||++..|..+|.+++.. |-.-...+|+.... ..+.|-|||-|.+.+.|+.||..|+..-| +|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g 84 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRL---YG 84 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEE---TT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence 34567788999999999999888777643 32333455554432 44568999999999999999999998665 79
Q ss_pred ceeeeecCC
Q 005739 590 RPLLGSIGT 598 (680)
Q Consensus 590 Rpl~~s~~~ 598 (680)
|+|.-.++.
T Consensus 85 ~~l~V~~a~ 93 (95)
T 2ywk_A 85 RPINVSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred CEEEEEEcC
Confidence 999877653
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.85 E-value=8.3e-05 Score=62.45 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=69.6
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++-. |-.-...+|+.. ..+--+-|-|||-|.+.+.|+.||..|+...++--+||+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKD-RFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCC-SSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 44677899999999999998888754 334444555432 2234456899999999999999999999887765579999
Q ss_pred eeecCCCccCCCC
Q 005739 593 LGSIGTPCFTGKQ 605 (680)
Q Consensus 593 ~~s~~~~~~p~k~ 605 (680)
.-.++.+......
T Consensus 89 ~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 89 QVKPADSESRGGS 101 (106)
T ss_dssp EEEECCCCSCCCC
T ss_pred EEEECCcccccCC
Confidence 9999987655443
No 30
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.84 E-value=2.3e-05 Score=65.96 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=66.2
Q ss_pred HhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 509 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 509 ~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
....+.++-|++.||.+..|..++++++.. |-.-...+|+... +-.+-|-|||-|.+.++|+.||..|+...| +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~ 96 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPL---D 96 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---C
Confidence 344567899999999999999998887753 4444566766554 555678999999999999999999998776 8
Q ss_pred CceeeeecC
Q 005739 589 GRPLLGSIG 597 (680)
Q Consensus 589 gRpl~~s~~ 597 (680)
||+|.-.++
T Consensus 97 g~~l~V~~a 105 (107)
T 3ulh_A 97 GRPMNIQLV 105 (107)
T ss_dssp TEECEEEEE
T ss_pred CcEEEEEEe
Confidence 999987664
No 31
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.83 E-value=5.4e-05 Score=65.76 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=66.9
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
....++-|++.||.+..|..++.+++-. |-.-...+++... +.-.-|-|||-|.+.+.|+.||..|+..-| +||
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~ 104 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGR 104 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCc
Confidence 4467899999999999999998877644 3333455555443 455679999999999999999999997643 899
Q ss_pred eeeeecCCCccC
Q 005739 591 PLLGSIGTPCFT 602 (680)
Q Consensus 591 pl~~s~~~~~~p 602 (680)
+|.-.++.+..+
T Consensus 105 ~l~V~~a~~~~~ 116 (124)
T 2kt5_A 105 PMDIQLVASQID 116 (124)
T ss_dssp EEEEEEECCTTC
T ss_pred EEEEEEeCCCCC
Confidence 999988865443
No 32
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.83 E-value=5.1e-05 Score=67.02 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=63.8
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||.++.|..++.+++...=.+-..++++.+ ...|-|||-|.+.+.|+.||.+||...| +||+|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~lng~~l---~Gr~i~ 98 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERLNNIEF---RGSVIT 98 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEE
Confidence 46789999999999999999988754214445555432 3579999999999999999999998776 899999
Q ss_pred eecCCCccC
Q 005739 594 GSIGTPCFT 602 (680)
Q Consensus 594 ~s~~~~~~p 602 (680)
...+....|
T Consensus 99 V~~a~~~p~ 107 (111)
T 2jvr_A 99 VERDDNPPP 107 (111)
T ss_dssp EEESCC---
T ss_pred EEECCCCCC
Confidence 988865444
No 33
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.83 E-value=4e-05 Score=66.46 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=67.8
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|+|.||.+..|..+|.+++-. |-.-...+|+... .+.-+.|-|||.|.+.++|+.||..|+...| +||+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 94 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDR-RTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI 94 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCT-TTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 45789999999999999988877642 3333344444332 2344578999999999999999999998765 89999
Q ss_pred eeecCCCccCCCCC
Q 005739 593 LGSIGTPCFTGKQS 606 (680)
Q Consensus 593 ~~s~~~~~~p~k~~ 606 (680)
...++.+..+.+..
T Consensus 95 ~v~~a~~~~~~~~~ 108 (126)
T 3ex7_B 95 SVDWCFVRGPPKGK 108 (126)
T ss_dssp EEEESEESSSCCC-
T ss_pred EEEEecCCCCCCCC
Confidence 99999877766543
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=2.6e-05 Score=65.06 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|+|.||.+..|..+|.+++.. |-.--..+++... +..+-|-|||-|.+.++|+.||..|+.--| +||+|.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 89 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMTI---KENIIK 89 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 3567889999999999988777643 3223344554433 444568899999999999999999997444 899999
Q ss_pred eecCCCccC
Q 005739 594 GSIGTPCFT 602 (680)
Q Consensus 594 ~s~~~~~~p 602 (680)
-.++.|..+
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999887654
No 35
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=6.6e-05 Score=66.52 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=67.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc-ceeeecCCce
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e-gcl~ls~gRp 591 (680)
..++.|++.||.++.|..++++++- .|-+-..++|+.. -|.|||-|.+.+.|+.||..|+. +.. + +|||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~-l-~Gr~ 83 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPV-L-RGQP 83 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCE-E-TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCce-E-CCEE
Confidence 3568899999999999999998875 4777778888752 59999999999999999999975 443 3 7999
Q ss_pred eeeecCCCccCCC
Q 005739 592 LLGSIGTPCFTGK 604 (680)
Q Consensus 592 l~~s~~~~~~p~k 604 (680)
|.-+++.+.....
T Consensus 84 l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 84 IYIQFSNHKELKT 96 (105)
T ss_dssp CCBCCCSSSSCCC
T ss_pred EEEEEcCCCCCCc
Confidence 9999987765444
No 36
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=5.9e-05 Score=63.19 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=65.0
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..+|.+++-. |-.-...+|+.... .+-|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNER---GSKGFGFVTFENSADADRAREKLHGTVV---EGRKI 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTT---TTCCEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCC---CCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45688999999999999888776532 22223455554432 2679999999999999999999987765 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
...++.|..+..
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cq3_A 86 EVNNATARVMTN 97 (103)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcccCCCCC
Confidence 999997765443
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=7.6e-05 Score=62.99 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=65.8
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc-----ceeee
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-----GCLLL 586 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e-----gcl~l 586 (680)
...++-|+|.||.+..|..++.+++-. |-.-...+|+. ...+....|-|||-|.+.++|+.||..|+. |.. +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~-~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVL-HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK-L 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCB-CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE-S
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEe-cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE-E
Confidence 456788999999999999988777642 22222334432 233445678999999999999999999994 433 3
Q ss_pred cCCceeeeecCCCccCCC
Q 005739 587 SNGRPLLGSIGTPCFTGK 604 (680)
Q Consensus 587 s~gRpl~~s~~~~~~p~k 604 (680)
+||+|.-.++.|..+..
T Consensus 89 -~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 -DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp -SSCEEEEECCCCCCCCC
T ss_pred -cCEEEEEEECCCCccCC
Confidence 89999999998765544
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=6.2e-05 Score=62.79 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=64.7
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||.+..|..+|.+++-. |-.--..+++. ...+--+-|-|||-|.+.++|+.||..|+.--| +||+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPL-DYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 85 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCC-CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEe-cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 5678899999999998888777643 32222344332 223345678999999999999999999987544 799999
Q ss_pred eecCCCccCCCC
Q 005739 594 GSIGTPCFTGKQ 605 (680)
Q Consensus 594 ~s~~~~~~p~k~ 605 (680)
-.++.|..+...
T Consensus 86 V~~a~~~~~~~~ 97 (102)
T 2cqb_A 86 VNLAKPMRIKES 97 (102)
T ss_dssp EEECCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999987665543
No 39
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=8.7e-05 Score=62.93 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=62.6
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|+|.||.+..|..+|.+++-. |-.-...+++. + --+-|-|||-|.+.+.|+.||..|+.--| +||+|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~-~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 91 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKN-R---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRL 91 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECC-S---SSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE-C---CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 45678999999999999888777644 32222344422 1 12468999999999999999999998654 89999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
...++.+.-+.
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99998775443
No 40
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.76 E-value=8.3e-05 Score=62.62 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=64.4
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..++.+++-. |-.-...+++ -|-|||-|.+.++|+.||..|+.--| +||+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDL---EGEN 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCcc---CCCE
Confidence 345678999999999999999988754 4444445554 46899999999999999999998754 7999
Q ss_pred eeeecCCCccCCC
Q 005739 592 LLGSIGTPCFTGK 604 (680)
Q Consensus 592 l~~s~~~~~~p~k 604 (680)
|...++.|....+
T Consensus 75 l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 75 IEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEcCCCcccc
Confidence 9999998766544
No 41
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=0.00011 Score=62.66 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=64.5
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHh-cc--ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFK-EN--CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~k-e~--c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
.++-|++.||++..|..++.+++-.-=. +. ...+++ +.-+-|-|||-|.+.+.|+.||..|+.--| +||
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFITFPNKEIAWQALHLVNGYKL---YGK 95 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----CSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----CCccceEEEEEECCHHHHHHHHHHhCCCEe---CCc
Confidence 4688999999999999999887654211 11 223333 344568999999999999999999997554 899
Q ss_pred eeeeecCCCccCCCC
Q 005739 591 PLLGSIGTPCFTGKQ 605 (680)
Q Consensus 591 pl~~s~~~~~~p~k~ 605 (680)
+|...++.+..+..+
T Consensus 96 ~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 96 ILVIEFGKNKKQRSS 110 (115)
T ss_dssp BCEEEECCCCSCCCC
T ss_pred EEEEEEccCCCCCCC
Confidence 999999987766554
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=0.00012 Score=61.07 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=67.1
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||++..|..+|.+++-. |-.-...+++... .+.-+-|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDR-ETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCS-SSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCC-CCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 35678899999999999999888754 4444455555432 2334568999999999999999999997654 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-.++.+....+
T Consensus 85 ~v~~a~~~~~~~ 96 (102)
T 1x5s_A 85 RVDQAGKSSDNR 96 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999987765544
No 43
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=0.00011 Score=60.17 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=64.0
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++-+ |-.-..++|+ .|-|||-|.+.+.|+.||..|+.--| +||+|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEV---KGKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45677899999999999999888764 4545556665 35899999999999999999997544 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
..+++.+..+..
T Consensus 74 ~v~~a~~~~~~~ 85 (90)
T 2dnp_A 74 NVELSTKGQKKS 85 (90)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998775443
No 44
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=8.1e-05 Score=63.49 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=64.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC----
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG---- 589 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g---- 589 (680)
.++-|++.||.+..|..++.+++-. |-+-..++++.. |-|||-|.+.+.|+.||..|+.-.| +|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~~~ 81 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGE 81 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEE---ECTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCc---cCCcCc
Confidence 4678999999999999998887643 444445666543 9999999999999999999998766 67
Q ss_pred -ceeeeecCCCccCCCC
Q 005739 590 -RPLLGSIGTPCFTGKQ 605 (680)
Q Consensus 590 -Rpl~~s~~~~~~p~k~ 605 (680)
|+|.-.++.|..+...
T Consensus 82 ~~~i~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 82 TAYIRVKVDGPRSPSYG 98 (108)
T ss_dssp EEEEEEEESSCCSCCCC
T ss_pred ceEEEEEeCCCCCCCCC
Confidence 9999999988766553
No 45
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.73 E-value=6.3e-05 Score=61.49 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=64.8
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++.. |-.-...+++.. +..+-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45688999999999999998877754 333334555542 233568999999999999999999997654 89999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
...++.+.-+.
T Consensus 79 ~v~~a~~~~~~ 89 (92)
T 2dgv_A 79 DVRIDRNASGP 89 (92)
T ss_dssp CCEECSCCSSC
T ss_pred EEEEcCCCCCC
Confidence 99998776543
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.72 E-value=4.2e-05 Score=66.32 Aligned_cols=83 Identities=18% Similarity=0.113 Sum_probs=63.8
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++.|++.||.+..|..++.+++-. |-+-..++|+.. -|.|||-|.+.+.|+.||..|+..-+.+ +||||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHL-RNQPI 83 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCcEE
Confidence 35689999999999999998876632 444445566642 6999999999999999999987432323 79999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-.++.+..+..
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999998765543
No 47
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.72 E-value=0.00013 Score=65.28 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.++.|..++.+++ ..|-+-..++++.. ..+--+-|-|||-|.+.+.|+.||..|+.--| +||||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F-~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 142 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVF-EKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGREL 142 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHH-HHHSCEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 457889999999999999998888 45555555565443 23344568899999999999999999998654 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
..+++.|.-|..
T Consensus 143 ~v~~a~~~~~~~ 154 (158)
T 2kn4_A 143 RVQMARYGRPPD 154 (158)
T ss_dssp EEEEECCSSCCC
T ss_pred EEEECCCCCCCC
Confidence 999998775554
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.71 E-value=6.1e-05 Score=60.57 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=59.5
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++.. |-.-...+++ +...+..+.|-|||-|.+.+.|+.|+..|+..-| +||+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIP-LDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECC-EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEE-ECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 35688999999999999888877643 3332333433 2223444578899999999999999999987765 89999
Q ss_pred eeecC
Q 005739 593 LGSIG 597 (680)
Q Consensus 593 ~~s~~ 597 (680)
.-+++
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87654
No 49
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=0.00014 Score=59.92 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=62.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++-. |-.-...+++ .|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 74 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEF---QGKRM 74 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence 45678999999999999998877644 3333445554 34899999999999999999998765 79999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-+++.+.....
T Consensus 75 ~V~~a~~~~~~~ 86 (92)
T 2dgt_A 75 HVQLSTSRLRTA 86 (92)
T ss_dssp EEEESSCCCSCC
T ss_pred EEEEccCCCCCC
Confidence 999997765443
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=6.1e-05 Score=64.03 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|+|.||.+..|..++.+++.+ |-.-...+++... ..-+-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEE
Confidence 45678999999999999998887753 3333345555433 244568999999999999999999997655 79999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
...++.+..|.
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2do0_A 87 HVKMDERALPK 97 (114)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEcccCCCC
Confidence 99888655443
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.69 E-value=8.2e-05 Score=63.67 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=66.5
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||.+..|..+|.+++-. |-.-...+|+... .+.-+-|-|||-|.+.+.|+.||..|+..-| +||+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 98 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDK-QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK 98 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECS-SSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 4577899999999999888777642 3333445554422 2334457899999999999999999998655 799999
Q ss_pred eecCCCccCCCCC
Q 005739 594 GSIGTPCFTGKQS 606 (680)
Q Consensus 594 ~s~~~~~~p~k~~ 606 (680)
-.++.|..+.++.
T Consensus 99 V~~a~~~~~~~~~ 111 (115)
T 2cpz_A 99 VQLKRSKNDSKSG 111 (115)
T ss_dssp EECCCCSCCCCCC
T ss_pred EEEcCCCCcCCCC
Confidence 9999887766544
No 52
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00018 Score=59.72 Aligned_cols=86 Identities=16% Similarity=0.087 Sum_probs=64.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||++..|..++.+++-. |-.-...+|+.. ..+.-+.|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 34678899999999999998887743 333333444432 22444568999999999999999999997554 79999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
.-.++.+..+.
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999776553
No 53
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=0.00013 Score=60.84 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.++ |.+--..+++.. ....+-|-|||-|.+.++|+.||..|+.--| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~g~v~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEV----FEKATFIKVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHH----CSSCSEEECCBC--SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhCCEEEEEEC--CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEE
Confidence 35788999999999999887766 444334444433 3445678999999999999999999997544 69999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-.++.|.....
T Consensus 84 ~v~~a~~~~~~~ 95 (101)
T 2fc9_A 84 RLELQGPRGSPN 95 (101)
T ss_dssp EEEECSSCCCCC
T ss_pred EEEEcCCCCCCC
Confidence 999997764433
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=7e-05 Score=62.06 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=63.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCC--CCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~--ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
..+-|++.||.+..|..+|.+++-. |-.-...+|+....- +-.+.|-|||-|.+.++|+.||..|+..-| +||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence 4577899999999999888777642 222223444432210 113457999999999999999999998755 7999
Q ss_pred eeeecCCCccCCCC
Q 005739 592 LLGSIGTPCFTGKQ 605 (680)
Q Consensus 592 l~~s~~~~~~p~k~ 605 (680)
|.-.++.+..+...
T Consensus 80 l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 80 LEVRISERATKPAS 93 (98)
T ss_dssp CEEECSSCSSCCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99999977665443
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.68 E-value=0.00013 Score=63.52 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=64.3
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+..+-|++.||+++.|..++.+++-. |-.-...+++... +.-..|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45677889999999999998887643 3333445555543 455679999999999999999999987654 89999
Q ss_pred eeecCCCcc
Q 005739 593 LGSIGTPCF 601 (680)
Q Consensus 593 ~~s~~~~~~ 601 (680)
...++.+..
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 998886543
No 56
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=4.2e-05 Score=65.24 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=61.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee-----eecC
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-----LLSN 588 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl-----~ls~ 588 (680)
..+-|++.||.+..|..++.+++-. |-.-..++++... +..+-|-|||-|.+.+.|+.||..|+..-| +..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999998887766532 2233345555443 445568899999999999999999998766 2336
Q ss_pred CceeeeecCCC
Q 005739 589 GRPLLGSIGTP 599 (680)
Q Consensus 589 gRpl~~s~~~~ 599 (680)
||||..+++.|
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 89999988875
No 57
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.00011 Score=60.71 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=61.8
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||.+..|..++.+++-. |-.-..++.| ...+..|+|||-|.+.+.|+.||..|+..-| +||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i----~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 85 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQV----NTDSETAVVNVTYSSKDQARQALDKLNGFQL---ENFTLK 85 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEE----CCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEe----ecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 4577899999999999998887753 3333333322 2356778899999999999999999998655 799999
Q ss_pred eecCCCc
Q 005739 594 GSIGTPC 600 (680)
Q Consensus 594 ~s~~~~~ 600 (680)
-.++.|.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9988876
No 58
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.66 E-value=0.00011 Score=62.27 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=63.5
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++-. |-.--..+|+.. ..+--+-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 98 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI 98 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBC-TTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 45788999999999999887776632 222223344322 22234468999999999999999999998655 89999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
.-+++.|..|.
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 99998876554
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=6.1e-05 Score=63.27 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=62.4
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++-. |-.--..+++. ...+.-+.|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 95 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNL-DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI 95 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEE-CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEe-cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEE
Confidence 45788999999999999887776632 22222334332 222334468899999999999999999998654 79999
Q ss_pred eeecCCCccC
Q 005739 593 LGSIGTPCFT 602 (680)
Q Consensus 593 ~~s~~~~~~p 602 (680)
...++.|..|
T Consensus 96 ~V~~a~~~~~ 105 (106)
T 1p27_B 96 SVDWCFVRGP 105 (106)
T ss_dssp EEEESEESSC
T ss_pred EEEeecCCCC
Confidence 9998876544
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.66 E-value=5.1e-05 Score=62.58 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=57.9
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh--ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFK--ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~k--e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
|++.||+++.|..++.+++.. |- .-..++++... .+--.-|-|||-|.+.++|+.||..|+..-| +||+|.-.
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~-~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V~ 78 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVVT 78 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECT-TTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecC-CCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEEE
Confidence 688999999999999988743 44 44556665432 1223356799999999999999999998766 89999999
Q ss_pred cCCCccCCC
Q 005739 596 IGTPCFTGK 604 (680)
Q Consensus 596 ~~~~~~p~k 604 (680)
.+.|..|-.
T Consensus 79 ~~~~~~~~~ 87 (90)
T 3p5t_L 79 PSNKLEHHH 87 (90)
T ss_dssp CC-------
T ss_pred ECCCCcccc
Confidence 988765543
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=0.00012 Score=62.21 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=64.0
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhcc-c------cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN-C------SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 585 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~-c------~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ 585 (680)
...+-|++.||.+..|..++.+++-..=.-. | ..+++. ...+.-.-|-|||-|.+.+.|+.||..|+.--|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL-DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF- 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB-CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE-eCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence 4578899999999999988877664321111 0 133332 112233468999999999999999999997765
Q ss_pred ecCCceeeeecCCCccCCCC
Q 005739 586 LSNGRPLLGSIGTPCFTGKQ 605 (680)
Q Consensus 586 ls~gRpl~~s~~~~~~p~k~ 605 (680)
+||+|.-.++.+..+...
T Consensus 91 --~g~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPPMNS 108 (113)
T ss_dssp --TTEECEEECSSCCCCSTT
T ss_pred --CCCEEEEEECCCCCCCCC
Confidence 799999999988766543
No 62
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.66 E-value=8e-05 Score=67.09 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=68.6
Q ss_pred HhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 509 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 509 ~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
..+.+..+-|+|.||.+..|..+|.+++-. |-.-...+|+... .+.-+-|-|||.|.+.++|+.||..|+.-.| +
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~ 107 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDK-MKKTACGFCFVEYYSRADAENAMRYINGTRL---D 107 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---T
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHhCCCEE---C
Confidence 345567889999999999998888777632 2222344444322 2233457899999999999999999997666 8
Q ss_pred CceeeeecCCCccCCCC
Q 005739 589 GRPLLGSIGTPCFTGKQ 605 (680)
Q Consensus 589 gRpl~~s~~~~~~p~k~ 605 (680)
||+|...++.+.-+++.
T Consensus 108 g~~l~V~~a~~~~~~~~ 124 (156)
T 1h2v_Z 108 DRIIRTDWDAGFKEGRQ 124 (156)
T ss_dssp TEECEEEEESCCCTTCC
T ss_pred CeEEEEEECCCCCCcCC
Confidence 99999999988766654
No 63
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.65 E-value=7.6e-05 Score=59.74 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=60.0
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
+-|++.||++..|..++.+++.. |-.-...+++.. ..+.-..|-|||-|.+.++|+.|+..|+..-| +||+|.-+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEc-CCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEE
Confidence 34789999999999888877643 333344555432 22334568899999999999999999987655 89999998
Q ss_pred cCCCc
Q 005739 596 IGTPC 600 (680)
Q Consensus 596 ~~~~~ 600 (680)
++.|.
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 88764
No 64
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00011 Score=61.27 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=62.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+..+-|++.||.+..|..++++++-..=.- ..+++. ..+.|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v--~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSV--PLRLTW-----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTL 86 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCC--CSEEEE-----ETTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCE--EEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 456789999999999999988876542211 234442 35679999999999999999999998765 89999
Q ss_pred eeecCCCccC
Q 005739 593 LGSIGTPCFT 602 (680)
Q Consensus 593 ~~s~~~~~~p 602 (680)
.-.++.|..|
T Consensus 87 ~V~~a~~~~~ 96 (97)
T 2e5j_A 87 RVALARQQRD 96 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999877543
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=5.9e-05 Score=61.88 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=62.5
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
...++-|++.||.+..|..++.+++-.. .-..++|+.. -+--..|-|||-|.+.+.|+.||. |+..-| +||+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~ 78 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRY 78 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcE
Confidence 4567889999999999999988777543 4445555543 233446899999999999999999 886544 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|.-..+.+.
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 988877654
No 66
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.64 E-value=0.00018 Score=60.08 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=60.5
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 517 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 517 lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
=|++.||.+..|..++.+++-. |-+--..+|+.. ..|-|||-|.+.++|+.||..|+..-| +||+|...+
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVEL 71 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEEE
Confidence 4788999999999999888754 334344555544 679999999999999999999987644 899999998
Q ss_pred CCCcc
Q 005739 597 GTPCF 601 (680)
Q Consensus 597 ~~~~~ 601 (680)
+.+..
T Consensus 72 a~~~~ 76 (101)
T 2hvz_A 72 STGMP 76 (101)
T ss_dssp SSSCC
T ss_pred ccCCC
Confidence 87654
No 67
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.64 E-value=0.00014 Score=65.51 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=63.2
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhcc---ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~---c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
.++-|++-||++..|..++++.++..|..- ....+ .+ +-..-|.|||-|.+.+.|+.||..|+..-| +||
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i-~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~gr 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV-DL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF---QGN 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC---TTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe-cc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe---CCC
Confidence 367799999999999999998888887753 22333 22 234479999999999999999999998765 799
Q ss_pred eeeeecCCC
Q 005739 591 PLLGSIGTP 599 (680)
Q Consensus 591 pl~~s~~~~ 599 (680)
||.-.++.+
T Consensus 101 ~l~V~~a~~ 109 (127)
T 2a3j_A 101 PLVITFSET 109 (127)
T ss_dssp CCEEEECCC
T ss_pred EEEEEEccC
Confidence 999888764
No 68
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=0.00014 Score=60.90 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=64.1
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+..+-|+|.||.++.|..++.+++-. |-.-...+++ +...+.-+-|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 85 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIP-REPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGREL 85 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECC-BCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE-eCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 45688999999999999988777643 2222233333 2222344568999999999999999999997654 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
...++.+.-+..
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 999987665543
No 69
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=0.00018 Score=59.99 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=61.2
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHH-hccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAF-KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~-ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
...+-|++.||.+..|..++.+++-+.- -.-...+++ -|-|||-|.+.++|+.||..|+..-| +||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 80 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKALNGKVL---DGSP 80 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHSSEEE---TTEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHhCCCEe---CCcE
Confidence 4568899999999999999887765420 112223322 58999999999999999999997644 7999
Q ss_pred eeeecCCCccCCC
Q 005739 592 LLGSIGTPCFTGK 604 (680)
Q Consensus 592 l~~s~~~~~~p~k 604 (680)
|...++.|.....
T Consensus 81 l~v~~a~~~~~~~ 93 (99)
T 2cpd_A 81 IEVTLAKPVDKDS 93 (99)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998765543
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=9e-05 Score=60.75 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=60.5
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..++.+++-. |-.-...+++. ...+..+.|-|||-|.+.++|+.||..|+..-| +||+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 86 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVY-DQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRR 86 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEE-CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEE-cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEE
Confidence 345778999999999999998877643 33323344432 222334568899999999999999999987544 8999
Q ss_pred eeeecCC
Q 005739 592 LLGSIGT 598 (680)
Q Consensus 592 l~~s~~~ 598 (680)
|.-+++.
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9887764
No 71
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=6.9e-05 Score=62.50 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=64.4
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++- .-...++|.. ..+-.+-|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~----~~~~~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFD----GSVRARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKV 84 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTST----TCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhc----CCeEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 3567789999999999988877665 3344555532 12334458999999999999999999998654 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-.++.|...+.
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2fc8_A 85 TLDWAKPKGEGG 96 (102)
T ss_dssp EEEECCCCCSSS
T ss_pred EEEEecCCCCCC
Confidence 999998866554
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.62 E-value=0.00012 Score=61.44 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=65.6
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC--c
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--R 590 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g--R 590 (680)
..++-|++.||.+..|..++.+++-. |-.-...+|+... +.-+-|-|||-|.+.+.|+.||..|+..-| -+| |
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQT--MPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCC--CTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc--CCCCCc
Confidence 45788999999999999888777642 3333345555443 334468999999999999999999997755 233 9
Q ss_pred eeeeecCCCccCCCC
Q 005739 591 PLLGSIGTPCFTGKQ 605 (680)
Q Consensus 591 pl~~s~~~~~~p~k~ 605 (680)
||.-.++.+..+..+
T Consensus 88 ~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 88 SLVVKFADTDKESGP 102 (105)
T ss_dssp CCEEEESCSSCCCSC
T ss_pred cEEEEECccCcccCC
Confidence 999999987665443
No 73
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.60 E-value=0.00014 Score=65.05 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=78.8
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++-||+++.|..+|.+++...+...- . +.+...+..+-|-|||-|.+.+.|+.|| +|+.--| +||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~--~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-L--AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---FGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C--CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-E--EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---CCeE
Confidence 456788999999999999999999998886533 2 2222344567799999999999999999 6887655 5999
Q ss_pred eeeecCCCccC----CCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 592 LLGSIGTPCFT----GKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 592 l~~s~~~~~~p----~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
|.-....+... .....|+|.|.-+-. ..++++..+
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t----~~~l~~~F~ 121 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFNIT----EDELKEVFE 121 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSSCC----HHHHHHHCT
T ss_pred EEEecCCCccccccccCCEEEEeCCCCCCC----HHHHHHHHH
Confidence 99988865433 235578888765533 344555443
No 74
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=9.3e-05 Score=66.72 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc-ceeeecCCcee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e-gcl~ls~gRpl 592 (680)
.++.|++.||.+..|..++++++- -|-+-..++|+.. -|.|||-|.+.++|+.||..|+. +.. -+||||
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~--l~Gr~l 99 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPV--LRGQPI 99 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCC--BTTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCce--ECCeEE
Confidence 478999999999999999988774 3556667777752 59999999999999999999985 433 379999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-+++.+..+..
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998776654
No 75
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.60 E-value=0.00016 Score=67.92 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=66.5
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
.+.++-|++.||++..|..+|.+++-. |-.-..++++... +..+-|-|||.|.+.+.|+.||..|+..-| +||+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr~ 158 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRP 158 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCEE
Confidence 466899999999999999998888765 4444556665443 455679999999999999999999997644 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|.-.++.+.
T Consensus 159 l~V~~a~~~ 167 (177)
T 2f3j_A 159 MDIQLVASQ 167 (177)
T ss_dssp CEEEEESSG
T ss_pred EEEEEecCC
Confidence 998887554
No 76
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.60 E-value=0.00011 Score=63.31 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=62.1
Q ss_pred HhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 509 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 509 ~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
.......+-|++.||.+..|..+|.+++-. |-.--..+|+ -|-|||-|.+.+.|+.||..|+..-| +
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~---~ 91 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSF---A 91 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEE---T
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEE---C
Confidence 345567788999999999999888776632 3333344555 69999999999999999999998765 9
Q ss_pred CceeeeecCCCcc
Q 005739 589 GRPLLGSIGTPCF 601 (680)
Q Consensus 589 gRpl~~s~~~~~~ 601 (680)
||+|.-.++.+..
T Consensus 92 g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 92 NQPLEVVYSKLPA 104 (108)
T ss_dssp TEECEEESCSCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999999987643
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00013 Score=63.52 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=61.8
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
.+.|++.||.+..|..++.+++-. |-+-...+|+. .-|.|||-|.+.+.|+.||..|+..=+. -+||||.-
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~-i~Gr~l~V 85 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMP-------FKRQALVEFENIDSAKECVTFAADVPVY-IAGQQAFF 85 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCCB-SSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEC-------CCCEEEEEECCHHHHHHHHHHhccCCce-ECCEEEEE
Confidence 578999999999999988877643 44445566664 2699999999999999999999754332 38999999
Q ss_pred ecCCCccC
Q 005739 595 SIGTPCFT 602 (680)
Q Consensus 595 s~~~~~~p 602 (680)
.++.+...
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99876543
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=0.00018 Score=63.77 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=62.4
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
--|++|+.||.=+-+..+|-.-+.+.|. +|--+++.-|. |+|||.|...++|..|+.+|+.-=| +|||+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~Vtg------G~AfV~F~~~esA~~A~~~l~G~~l---~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSITG------CSAILRFINQDSAERAQKRMENEDV---FGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEECCT------TCEEEEESSHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEEec------CEEEEEECCHHHHHHHHHHhcCCcc---CCceEE
Confidence 4588999999999998887777777775 45445555555 9999999999999999999998765 799999
Q ss_pred eecCCC
Q 005739 594 GSIGTP 599 (680)
Q Consensus 594 ~s~~~~ 599 (680)
-+++..
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 988753
No 79
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00016 Score=60.01 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=59.0
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
.+-|++.||.+..|..++.+++-. |-.--..+|+. .-|-|||-|.+.++|+.||..|+.--| .-.||+|..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~~l~V 87 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVK-------GDSFAYIQYESLDAAQAACAKMRGFPL-GGPDRRLRV 87 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECS-------SSCCEEEEESSHHHHHHHHHHHTTCBC-SSSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeC-------CCCEEEEEECCHHHHHHHHHHHCCCEe-CCCCcEEEE
Confidence 366889999999999888776632 32223344442 268999999999999999999996543 112999999
Q ss_pred ecCCCccC
Q 005739 595 SIGTPCFT 602 (680)
Q Consensus 595 s~~~~~~p 602 (680)
.++.|..+
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00012 Score=60.05 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=57.4
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||.+..|..++.+++-. |-.-...+++. ..-+--+.|-|||-|.+.++|+.||..|+..-| +||+|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 89 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMK-DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVIK 89 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECC-CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEe-CCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 5677899999999999887766532 22222334432 222344568999999999999999999997544 799998
Q ss_pred eecC
Q 005739 594 GSIG 597 (680)
Q Consensus 594 ~s~~ 597 (680)
.+++
T Consensus 90 v~~a 93 (94)
T 2e5h_A 90 ASIA 93 (94)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.58 E-value=0.00015 Score=62.74 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=68.2
Q ss_pred hhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 510 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
......+-|++.||.+..|..++.+++-+ |-+-...+|+.. ..+.-+.|-|||-|.+.++|+.|| .|+...| +|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCD-KFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---RG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEE-CTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---TT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec-CCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---CC
Confidence 34456788999999999999998877653 333334555432 223345789999999999999999 8887655 89
Q ss_pred ceeeeecCCCccCCCC
Q 005739 590 RPLLGSIGTPCFTGKQ 605 (680)
Q Consensus 590 Rpl~~s~~~~~~p~k~ 605 (680)
|+|.-+++.+..|+.+
T Consensus 105 ~~l~V~~a~~~~~~~~ 120 (124)
T 2jwn_A 105 RTIKVLPKRTNMPGIS 120 (124)
T ss_dssp EECEEEESSCCCSSCC
T ss_pred eEEEEEECCCCCCCCC
Confidence 9999999988777754
No 82
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=5.8e-05 Score=63.03 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=63.5
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
.+..+-|++.||.+..|..++.+++-. |-.-...+++.. ..+.-+-|-|||-|.+.+.|+.||..|+...| +||+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRA 79 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSC
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcE
Confidence 345678999999999999998887753 333334455432 12334468999999999999999999997665 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|...++.+.
T Consensus 80 l~v~~a~~~ 88 (104)
T 1p1t_A 80 LRVDNAASE 88 (104)
T ss_dssp BEEEETTCT
T ss_pred EEEEeCCCc
Confidence 998887654
No 83
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.56 E-value=0.00013 Score=58.95 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=59.3
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||++..|..++.+++-. |-.-...+++.. ..+.-+.|-|||-|.+.+.|+.|+..|+.--| +||+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEEE
Confidence 4677899999999999888777642 322233444432 22334568999999999999999999997544 899999
Q ss_pred eecCCCc
Q 005739 594 GSIGTPC 600 (680)
Q Consensus 594 ~s~~~~~ 600 (680)
-.++.|.
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 8887653
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=9e-05 Score=63.65 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=62.5
Q ss_pred cccEEEEecCCCCCchhHHH---HHHHHHHhccccceeccCCCC--CCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 514 HGTLVVLENLDPSYTSTVVE---DLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVe---dlv~~a~ke~c~AkmI~~~~~--ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
+.+-|++.||++..|..++. +++- .|-.-..++|+....+ +-...|-|||-|.+.+.|+.||..|+..-| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---~ 89 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---D 89 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---C
Confidence 45668899999999999876 4432 2223334555544332 223458999999999999999999998866 8
Q ss_pred CceeeeecCCCcc
Q 005739 589 GRPLLGSIGTPCF 601 (680)
Q Consensus 589 gRpl~~s~~~~~~ 601 (680)
||+|...++.|..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999997764
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=0.00025 Score=58.16 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=60.4
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||.+..|..++.+++-. |-.-...+|+ -|-|||-|.+.+.|+.||..|+.--| +||+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 73 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNIN 73 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEEE
Confidence 4567889999999999988777643 3333344444 58999999999999999999996433 899999
Q ss_pred eecCCCccCCC
Q 005739 594 GSIGTPCFTGK 604 (680)
Q Consensus 594 ~s~~~~~~p~k 604 (680)
-.++.+..+..
T Consensus 74 v~~a~~~~~~~ 84 (90)
T 2dnq_A 74 VEASKNKSKAS 84 (90)
T ss_dssp EECSSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99997765443
No 86
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.55 E-value=0.00015 Score=61.79 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=65.5
Q ss_pred hhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 510 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
..-+.++-|++.||.+..|..++.+++.. |-.-...+|+. ....-|-|||-|.+.++|+.||..|+.-.| +|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g 74 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGN----TPETRGTAYVVYEDIFDAKNAVDHLSGFNV---SN 74 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEC----STTTTTCEEEEESSHHHHHHHHHHHTTCBS---SS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEee----CCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence 34466889999999999999998877642 33344555552 122378999999999999999999987655 89
Q ss_pred ceeeeecCCCccCC
Q 005739 590 RPLLGSIGTPCFTG 603 (680)
Q Consensus 590 Rpl~~s~~~~~~p~ 603 (680)
|+|...++.|.-..
T Consensus 75 ~~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 75 RYLVVLYYNANRAF 88 (115)
T ss_dssp CBCEEEECCHHHHT
T ss_pred eEEEEEEecCChhh
Confidence 99999988765433
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.55 E-value=0.00011 Score=65.48 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=64.2
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|+|.||.+..|..+|++++-. |-.-...+++. ...+-..-|-|||-|.+.++|+.||..|+.--| +||+|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~-d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l 118 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVY-DQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 118 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEEC-CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 34678899999999999998877632 32333444442 223345678999999999999999999997544 89999
Q ss_pred eeecCCCccC
Q 005739 593 LGSIGTPCFT 602 (680)
Q Consensus 593 ~~s~~~~~~p 602 (680)
.-.++.+.-|
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999887654
No 88
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.55 E-value=0.00025 Score=58.84 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
+-|++.||.+..|..++.+++-. |-.-...+++.. ..+..+-|-|||-|.+.+.|+.||..|+..-| +||+|..+
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~ 77 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFD-PQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKCG 77 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC-TTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEE
Confidence 57899999999998887776642 222233444422 22344578999999999999999999998655 89999999
Q ss_pred cCCCcc
Q 005739 596 IGTPCF 601 (680)
Q Consensus 596 ~~~~~~ 601 (680)
++.+..
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 987653
No 89
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=0.00017 Score=61.93 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=64.4
Q ss_pred ChHHHHHh-hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc
Q 005739 503 PWEERIRV-AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 581 (680)
Q Consensus 503 Pwee~~~~-a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e 581 (680)
|+...+.. ....++-|++.||.+..|..++.+++-. |-.-...+|+.... -.-|-|||-|.+.++|+.|+..|+.
T Consensus 16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~---~~kg~afV~f~~~~~A~~Ai~~l~g 91 (109)
T 2err_A 16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNER---GSKGFGFVTFENSADADRAREKLHG 91 (109)
T ss_dssp ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBTT---BCTTEEEEECCCSHHHHHHHHHHTT
T ss_pred CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECCC---CCceEEEEEECCHHHHHHHHHHcCC
Confidence 44444433 3446788999999999999988776532 33333555554432 2579999999999999999999997
Q ss_pred ceeeecCCceeeeecCCCc
Q 005739 582 GCLLLSNGRPLLGSIGTPC 600 (680)
Q Consensus 582 gcl~ls~gRpl~~s~~~~~ 600 (680)
.-| +||+|...++.|.
T Consensus 92 ~~~---~g~~l~V~~a~~~ 107 (109)
T 2err_A 92 TVV---EGRKIEVNNATAR 107 (109)
T ss_dssp CEE---TTEECEEEECCCS
T ss_pred CEE---CCEEEEEEECCCC
Confidence 755 8999999888664
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.54 E-value=0.00013 Score=59.45 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=60.3
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
|-|++.||++..|..++.+++-. |-.--..+++.. ..+.-+-|-|||-|.+.+ |+.|+..|+...| +||+|.-+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYD-RETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCC-SSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEc-CCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEE
Confidence 34789999999999999888765 444445555432 334456789999999999 9999999998766 89999999
Q ss_pred cCCCccC
Q 005739 596 IGTPCFT 602 (680)
Q Consensus 596 ~~~~~~p 602 (680)
.+.+..+
T Consensus 76 ~a~~~~~ 82 (90)
T 2ki2_A 76 EANPKKS 82 (90)
T ss_dssp EC-----
T ss_pred EcCCCCC
Confidence 9876543
No 91
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00012 Score=60.53 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=62.6
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
..+..+-|++.||.+..|..++.+++ .+--..+.| ..+...-|-|||-|.+.++|+.||..|+..-| +||
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F----~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~ 81 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVF----EDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGR 81 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHH----CSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH----hhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCe
Confidence 34567889999999999988876654 443334444 33344568999999999999999999997544 899
Q ss_pred eeeeecCCCccC
Q 005739 591 PLLGSIGTPCFT 602 (680)
Q Consensus 591 pl~~s~~~~~~p 602 (680)
+|.-.++.|.-+
T Consensus 82 ~l~v~~a~~~~~ 93 (96)
T 1fjc_A 82 SVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEECSSSCC
T ss_pred EEEEEEcCCCCC
Confidence 999988876543
No 92
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.54 E-value=0.00024 Score=57.26 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=55.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHH---h-------ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccc
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAF---K-------ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 582 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~---k-------e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~eg 582 (680)
...+-|++.||++..|..++.+++.+.. . .-...++.. .-|-|||-|.+.+.|+.|+ .|+.-
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-------~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-------SSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-------CCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567889999999999999999987764 2 222333332 2699999999999999999 99876
Q ss_pred eeeecCCceeeee
Q 005739 583 CLLLSNGRPLLGS 595 (680)
Q Consensus 583 cl~ls~gRpl~~s 595 (680)
-| +||+|.-+
T Consensus 76 ~~---~g~~l~V~ 85 (87)
T 2hzc_A 76 IF---QGQSLKIR 85 (87)
T ss_dssp EE---TTEECEEE
T ss_pred EE---CCeEEEEe
Confidence 44 89988644
No 93
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00017 Score=62.41 Aligned_cols=75 Identities=13% Similarity=0.031 Sum_probs=59.6
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++.|++.||.+..|..++.+|+-. |-.-...+|+. .-|-|||-|.+.+.|+.||..|+..-| +||||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE-------GGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS-------SSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 4688999999999999998888753 44334445542 457899999999999999999997655 799998
Q ss_pred eecCCC
Q 005739 594 GSIGTP 599 (680)
Q Consensus 594 ~s~~~~ 599 (680)
-.++..
T Consensus 78 V~~a~~ 83 (111)
T 1whx_A 78 LEWAPI 83 (111)
T ss_dssp EEEEET
T ss_pred EEECCC
Confidence 887743
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00012 Score=61.52 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=64.1
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++-.- .-...+|+.. ..+.-+-|-|||-|.+.++|+.|| .|+.--| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--gi~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL--SIRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS--CEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--CceEEEEeec-CCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEE
Confidence 346788999999999999988877543 2334444432 223344678999999999999999 8987544 89999
Q ss_pred eeecCCCccCCCC
Q 005739 593 LGSIGTPCFTGKQ 605 (680)
Q Consensus 593 ~~s~~~~~~p~k~ 605 (680)
.-.++.|..+.+.
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2dng_A 86 RVDIAEGRKQDKS 98 (103)
T ss_dssp EEEECCCCCCCCS
T ss_pred EEEEecCCCCCCC
Confidence 9999987665543
No 95
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=0.00026 Score=58.87 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=62.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++++++-. |-.-...+++.. ..+.-+-|-|||-|.+.++|+.||. |+..-| +||+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCC-TTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC-CCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEE
Confidence 45678999999999999998776643 222234444432 2234456899999999999999998 865433 79999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-.++.|.....
T Consensus 82 ~V~~a~~~~~~~ 93 (99)
T 2dgs_A 82 EVKRAEPRDSKS 93 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCCcccC
Confidence 999998765544
No 96
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00031 Score=58.64 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=62.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||+++.|..++.+++...-.-.. ++|. ...+-..-|-|||-|.+.+.|+.||. |+..-| +||+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~-~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVV-DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCC-EEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEe-cCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEE
Confidence 35678899999999999999998876544333 2222 11223456899999999999999998 887655 69999
Q ss_pred eeecCCCccC
Q 005739 593 LGSIGTPCFT 602 (680)
Q Consensus 593 ~~s~~~~~~p 602 (680)
.-.++.|..+
T Consensus 88 ~V~~a~~~~~ 97 (101)
T 1fj7_A 88 KLEKPKGRDG 97 (101)
T ss_dssp EEECCSCCCC
T ss_pred EEEEcCCCCC
Confidence 9998876543
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=0.00023 Score=59.79 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=61.7
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||.+..|..++.+++-.. - -...+|+......-.+-|-|||-|.+.++|+.|| .|+..-| +||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~ 87 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRIR 87 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEECE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEEE
Confidence 34789999999999998887765431 2 2233333222111345689999999999999999 9987655 899999
Q ss_pred eecCCCccCCC
Q 005739 594 GSIGTPCFTGK 604 (680)
Q Consensus 594 ~s~~~~~~p~k 604 (680)
-.++.|..+..
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99988765544
No 98
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.51 E-value=0.00019 Score=61.05 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=60.0
Q ss_pred cccEEEEecCCCC-CchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps-~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.++-|++.||++. .|..++.+++.. |-.-...+| +-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVL---AGQTL 92 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 3578899999999 898887776643 333333444 579999999999999999999997655 89999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
.-.++.+.-+.
T Consensus 93 ~V~~a~~~~~~ 103 (110)
T 1wf1_A 93 DINMAGEPKPD 103 (110)
T ss_dssp CEEESCCCCSC
T ss_pred EEEECCCCCCC
Confidence 99998754443
No 99
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=0.00011 Score=61.64 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=64.2
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++-. |-.-...+++. ...+.-+-|-|||-|.+.+.|+.||..|+.--| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAK-DKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLIL 87 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEE-CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEee-cCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence 45688999999999998887766532 22222334332 222334567899999999999999999997654 89999
Q ss_pred eeecCCCccCCCC
Q 005739 593 LGSIGTPCFTGKQ 605 (680)
Q Consensus 593 ~~s~~~~~~p~k~ 605 (680)
...++.|..+..+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988765544
No 100
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.50 E-value=0.00026 Score=63.28 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=62.2
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||+++.|..++.++ |..-...+.+ ..+....|-|||-|.+.++|+.|+..|+...| +||+|.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~----F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~ 167 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEV----FEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSVS 167 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHH----CTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---TTEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHH----HHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 5788999999999998776555 5555566666 33445678999999999999999999998655 899999
Q ss_pred eecCCCc
Q 005739 594 GSIGTPC 600 (680)
Q Consensus 594 ~s~~~~~ 600 (680)
.+++.|.
T Consensus 168 v~~a~~k 174 (175)
T 1fje_B 168 LYYTGEK 174 (175)
T ss_dssp EEECSSC
T ss_pred EEecCCC
Confidence 9998764
No 101
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.50 E-value=0.00022 Score=65.42 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeee
Q 005739 507 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 586 (680)
Q Consensus 507 ~~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~l 586 (680)
++.......+.|++.||+++.|..+|.+++-. |-+-..++++.... +--+.|-|||-|.+.+.|+.|+..|+...|
T Consensus 117 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~A~~~l~g~~~-- 192 (216)
T 2qfj_A 117 QLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPT-TGKHKGYGFIEYEKAQSSQDAVSSMNLFDL-- 192 (216)
T ss_dssp HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCBC--
T ss_pred hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCC-CCCcCceEEEEecCHHHHHHHHHHccCCEe--
Confidence 33444567789999999999998887777632 33344555554321 233467899999999999999999998765
Q ss_pred cCCceeeeecCCCccCCC
Q 005739 587 SNGRPLLGSIGTPCFTGK 604 (680)
Q Consensus 587 s~gRpl~~s~~~~~~p~k 604 (680)
+||+|.-+++.+..+..
T Consensus 193 -~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 193 -GGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp -SSSBCEEEECSSCSSTT
T ss_pred -CCcEEEEEEecCCCCCC
Confidence 89999999987764433
No 102
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.49 E-value=0.00027 Score=63.26 Aligned_cols=79 Identities=19% Similarity=0.072 Sum_probs=64.6
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..++.+++-. |-+-..++++.. +-|-|||-|.+.+.|+.||..|+.--| +|||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 139 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCR 139 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHH-HSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence 346688999999999999999888864 555556666553 479999999999999999999997543 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|..+++.|.
T Consensus 140 l~v~~a~~~ 148 (150)
T 2i2y_A 140 VRVELSNGE 148 (150)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999988663
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.49 E-value=0.00023 Score=56.22 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=53.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
|++.||+++.|..++.+++-+ |-.-...+++ +...+..+.|-|||-|.+.++|+.|+. |+...| +||+|....
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~ 74 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLM-FDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKK 74 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHT-TSCCSEECCC-BCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHh-cCCEEEEEEE-ecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEe
Confidence 678999999999998887654 3333344443 333345567899999999999999997 766544 899987554
No 104
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=0.00042 Score=58.03 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=62.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..+|.+++-. |-.-...+++. ...+..+-|-|||-|.+.++|+.||..|+...| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPK-DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPI 87 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCB-CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe-cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 45678999999999999888776643 22223344433 222445668999999999999999999997654 89999
Q ss_pred eeecCCCcc
Q 005739 593 LGSIGTPCF 601 (680)
Q Consensus 593 ~~s~~~~~~ 601 (680)
.-.++.+..
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999887643
No 105
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.00016 Score=58.18 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=57.3
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||++..|..++.+++.. |-.-...+|+. .-|-|||-|.+.++|+.|+..|..|.. -+||+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~-------~kg~afV~f~~~~~A~~a~~~l~~~~~--~~g~~l 79 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQ-------RQQCAFIQFATRQAAEVAAEKSFNKLI--VNGRRL 79 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEG-------GGTEEEEEESSHHHHHHHHHTTTTTCE--ETTEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEEC-------CCCEEEEEECCHHHHHHHHHHhcCCee--ECCCEE
Confidence 45677899999999999998887743 33333455554 368999999999999999999955544 379998
Q ss_pred eeecC
Q 005739 593 LGSIG 597 (680)
Q Consensus 593 ~~s~~ 597 (680)
.-.++
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 76654
No 106
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.48 E-value=0.00021 Score=61.23 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=59.4
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++-. |-+-...+|+.. ..+.-+-|-|||-|.+.+.|+.||..|+...| +||+|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 112 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFID-KQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRL 112 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCC-SSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeC-CCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 45688999999999999887776542 222234444432 33445678999999999999999999997655 79998
Q ss_pred eeecC
Q 005739 593 LGSIG 597 (680)
Q Consensus 593 ~~s~~ 597 (680)
.-.++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 76553
No 107
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=0.00028 Score=58.53 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=63.8
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccc-cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c-~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
....+-|++.||++..|..++.+++-. |-.-. .++++... .+.-+-|-|||-|.+.+.|+.||..|+...| +||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~ 80 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNR-LTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGA 80 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECS-SSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecC-CCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCC
Confidence 345678999999999999998887654 33333 55665432 2233458899999999999999999998665 788
Q ss_pred e----eeeecCCCcc
Q 005739 591 P----LLGSIGTPCF 601 (680)
Q Consensus 591 p----l~~s~~~~~~ 601 (680)
+ |.-+++.|.-
T Consensus 81 ~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 81 TPAKRFKLNYATYSG 95 (99)
T ss_dssp SSCEECCEEETTCCS
T ss_pred CcceeEEEeecCCCC
Confidence 8 8888776653
No 108
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.46 E-value=0.00018 Score=61.53 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=57.5
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHh-ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccce-eeecCCceeee
Q 005739 517 LVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC-LLLSNGRPLLG 594 (680)
Q Consensus 517 lvllqNLdps~ts~eVedlv~~a~k-e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egc-l~ls~gRpl~~ 594 (680)
-|+|.||+|+-|..++.+++-.-=. +-+..+++. -..+.-.-|-|||-|.+.+.|+.||..|+..- -+.-+||||.-
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~-d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK-DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC-CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe-cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 3789999999998887765532111 244556553 22334456889999999999999999998753 11238999988
Q ss_pred ecCC
Q 005739 595 SIGT 598 (680)
Q Consensus 595 s~~~ 598 (680)
+++.
T Consensus 90 ~~Ak 93 (95)
T 2lkz_A 90 DFAK 93 (95)
T ss_dssp EECC
T ss_pred EEcc
Confidence 8764
No 109
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.45 E-value=0.00037 Score=56.20 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred ccEEEEecCCCCCchhH--HHHHHHHHHhcc---ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 515 GTLVVLENLDPSYTSTV--VEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 515 G~lvllqNLdps~ts~e--Vedlv~~a~ke~---c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
++.|++.||.+..+... -|+-++..|..- ...+|+. -+...-|-|||-|.+.+.|+.||..|+..-| +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE---EDGKTKGYIFLEYASPAHAVDAVKNADGYKL---DK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC---BTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---SS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC---CCCcEeEEEEEEECCHHHHHHHHHHhcCccc---CC
Confidence 46789999977663211 344455555542 2445542 2234568999999999999999999998766 78
Q ss_pred c-eeee
Q 005739 590 R-PLLG 594 (680)
Q Consensus 590 R-pl~~ 594 (680)
| ||.-
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 8 8753
No 110
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00023 Score=59.29 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=60.9
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..++.+++-+ |-.-...+|+. .-|-|||-|.+.+.|+.||..|+..-| +||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~-------~kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHK-------DKGFGFIRLETRTLAEIAKVELDNMPL---RGKQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEET-------TTTEEEEECSSSHHHHHHHHHHTTCCB---TTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEec-------CCCEEEEEECCHHHHHHHHHHhCCCEe---CCce
Confidence 345678999999999999887776532 22233444442 369999999999999999999997655 7999
Q ss_pred eeeecCCCcc
Q 005739 592 LLGSIGTPCF 601 (680)
Q Consensus 592 l~~s~~~~~~ 601 (680)
|.-.++.+..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999987643
No 111
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.45 E-value=0.00027 Score=58.11 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=60.4
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc-ceeeecCCcee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e-gcl~ls~gRpl 592 (680)
..+-|++.||.+..|..++.+++-+ |-.-.....| +.-|-|||-|.+.+.|+.||..|+. --| +||+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l 75 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKIM 75 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE---CCEEE
Confidence 4466889999999999999888754 2221223333 2478999999999999999999998 333 89999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
.-.++.|....
T Consensus 76 ~v~~a~~~~~~ 86 (93)
T 2cqh_A 76 EVDYSVSKKLR 86 (93)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCcccc
Confidence 99998776443
No 112
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.45 E-value=0.00023 Score=67.83 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=64.1
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHh-ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~k-e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.++.|++.||++..|..++.+++... - .-+.++++++ ..|.|||-|.+.+.|+.||..|+...| .+||+|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~~g~~l 220 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL--GENHHL 220 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCBS--SSSCBC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCcc--CCCCeE
Confidence 46889999999999998888877543 3 4456777764 269999999999999999999998766 349999
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
.-+++.|.
T Consensus 221 ~v~~a~~~ 228 (229)
T 2adc_A 221 RVSFSKST 228 (229)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 99998874
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.43 E-value=0.00024 Score=63.64 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=65.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+.++-|+|.||++..|..+|.+++-. |-.--..+++. ...+...-|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~-~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l 119 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPR-DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGREL 119 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGG-GSCCSEEECCC-CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 45788999999999999888776643 33233444432 223445678999999999999999999997665 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-.++.+..|..
T Consensus 120 ~V~~a~~~~~~~ 131 (135)
T 2lea_A 120 RVQMARYGRPPD 131 (135)
T ss_dssp EEEECCCCCCCT
T ss_pred EEEECCCCCCCc
Confidence 999998765544
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=6.2e-05 Score=67.19 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=62.2
Q ss_pred cccEEEEecCCCC-CchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcc-ceeeecCCce
Q 005739 514 HGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGRP 591 (680)
Q Consensus 514 ~G~lvllqNLdps-~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~e-gcl~ls~gRp 591 (680)
-++.|++.||.++ .|..|+++|+. -|-+-..++|+. .-|.|||-|.+.++|+.||..|+. +.. -+||+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~--l~Gr~ 93 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMR-------MKSQAFIEMETREDAMAMVDHCLKKALW--FQGRC 93 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHHHSCCC--SSSSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEec-------CCCEEEEEECCHHHHHHHHHHhccCCce--ECCEE
Confidence 4789999999998 99999988764 355666777763 359999999999999999999974 332 28999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|...++.+.
T Consensus 94 l~V~~a~~~ 102 (112)
T 1x4f_A 94 VKVDLSEKY 102 (112)
T ss_dssp CEEEEECSC
T ss_pred EEEEECccc
Confidence 999887543
No 115
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=61.17 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=58.9
Q ss_pred HhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 509 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 509 ~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
......++-|++.||.+..|..++.+++-. |. -...+|+...-.+.-+.|-|||-|.+.+.|+.|| .|+..-| +
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~ 86 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---G 86 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---T
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---C
Confidence 345677899999999999999998776542 22 2334444322134456789999999999999999 8987654 8
Q ss_pred CceeeeecCCC
Q 005739 589 GRPLLGSIGTP 599 (680)
Q Consensus 589 gRpl~~s~~~~ 599 (680)
||+|.-..+.+
T Consensus 87 g~~l~V~~a~~ 97 (100)
T 2j76_E 87 NRRIRVDVADQ 97 (100)
T ss_dssp TBCCCCEECCC
T ss_pred CeEEEEEeccC
Confidence 99998887765
No 116
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00023 Score=62.17 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||++..|..++.+++.. |-.-..++++.. ..+...-|-|||-|.+.++|+.|+..|+..-| +||+|.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~ 160 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLR 160 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCcEEE
Confidence 4667999999999999888877632 333344555432 22334467899999999999999999998765 899999
Q ss_pred eecCCC
Q 005739 594 GSIGTP 599 (680)
Q Consensus 594 ~s~~~~ 599 (680)
.+++.+
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 888753
No 117
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.42 E-value=0.00019 Score=62.12 Aligned_cols=77 Identities=26% Similarity=0.257 Sum_probs=60.2
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 517 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 517 lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
=|++.||+++.|..++.+++.. |-+--.++++.... ..-|-|||-|.+.+.|+.||..|+.--| +||+|.-..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~---~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V~~ 79 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN---GSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFVGR 79 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETT---EEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCC---CCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEE
Confidence 4889999999999988887743 44444566664431 1357899999999999999999997655 899999988
Q ss_pred CCCc
Q 005739 597 GTPC 600 (680)
Q Consensus 597 ~~~~ 600 (680)
+.+.
T Consensus 80 a~~~ 83 (115)
T 4f25_A 80 FKSR 83 (115)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7664
No 118
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.42 E-value=0.00053 Score=58.67 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=62.4
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..+|.+++-. |-.-...+++. ...+..+-|-|||-|.+.++|+.||..|+. . + +||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~-~-~g~~ 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVIT-DRQTGKSRGYGFVTMADRAAAERACKDPNP--I-I-DGRK 87 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESC-CSSSCCCCSEEEEEESSHHHHHHHHTCSSC--E-E-TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEE-cCCCCccceEEEEEECCHHHHHHHHHhCCC--c-C-CCEE
Confidence 345688999999999999988777642 33323444443 333455678999999999999999999994 2 3 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|.-.++.+.
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999998654
No 119
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.41 E-value=0.00012 Score=63.09 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=64.8
Q ss_pred HHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeec
Q 005739 508 IRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 587 (680)
Q Consensus 508 ~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls 587 (680)
+..+....+-|++.||++..|..+|.+++- .|-.-...+++.. ..+.-.-|-|||-|.+.++|+.||..|+..-|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--- 93 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMD-SETGRSKGYGFITFSDSECAKKALEQLNGFEL--- 93 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEE-TTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHcCCCEE---
Confidence 445556778899999999999999877763 2222234444432 12233458999999999999999999998654
Q ss_pred CCceeeeecCCCc
Q 005739 588 NGRPLLGSIGTPC 600 (680)
Q Consensus 588 ~gRpl~~s~~~~~ 600 (680)
+||+|.-+++.|.
T Consensus 94 ~g~~l~V~~a~~k 106 (108)
T 2jrs_A 94 AGRPMKVGHVTER 106 (108)
T ss_dssp SSSCCEEECSCSS
T ss_pred CCEEEEEEEcccC
Confidence 8999999888764
No 120
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.39 E-value=0.00027 Score=64.69 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=63.4
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHh-ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~k-e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.++.|++.||.+..|..++.+++-.. - .-...++++. .-|.|||-|.+.+.|+.|+..|+...| .+||+|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l 189 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL--GENHHL 189 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHHTSSCC--SSCCSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCcc--CCCCeE
Confidence 36889999999999998888776543 3 4456677664 269999999999999999999998766 349999
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
.-+++.|.
T Consensus 190 ~v~~a~~~ 197 (198)
T 1qm9_A 190 RVSFSKST 197 (198)
T ss_dssp CEEEECCC
T ss_pred EEEeeccc
Confidence 99998764
No 121
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.39 E-value=0.00016 Score=63.85 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=60.0
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.||+++.|..++.+++. .|-.-..++++... ..-.-|-|||-|.+.+.|+.|+..|+...++--.||||.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 566799999999999888777663 23333455555442 123356799999999999999999998877543379998
Q ss_pred eecC
Q 005739 594 GSIG 597 (680)
Q Consensus 594 ~s~~ 597 (680)
-+++
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
No 122
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.38 E-value=0.00012 Score=60.17 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
.+-|++.||.+..|..++.+++-+. +-..+++. ..-|-|||-|.+.+.|+.||..|+..-| +||+|.-
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V 72 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLIV 72 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEE
Confidence 4568899999999998887776543 33344442 5569999999999999999999997655 8999988
Q ss_pred ecC
Q 005739 595 SIG 597 (680)
Q Consensus 595 s~~ 597 (680)
.++
T Consensus 73 ~~a 75 (88)
T 1wg1_A 73 QLQ 75 (88)
T ss_dssp EEC
T ss_pred EEc
Confidence 776
No 123
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.38 E-value=0.00053 Score=57.07 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=60.0
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++-|++.|| ..|..++.+++-. |-+-...+|. ..-|-|||-|.+.+.|+.||..|+..-| +||+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 80 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQLK 80 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE-------TTTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec-------CCCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 4577888997 6777776665532 2222334442 5678999999999999999999998755 899999
Q ss_pred eecCCCccCCCCCce
Q 005739 594 GSIGTPCFTGKQSKF 608 (680)
Q Consensus 594 ~s~~~~~~p~k~~~f 608 (680)
-.++.+..+..+...
T Consensus 81 v~~a~~~~~~~~~~~ 95 (97)
T 1x5p_A 81 VNIARKQPMLDSGPS 95 (97)
T ss_dssp EECCSSCCCCCSSCS
T ss_pred EEECCCCCCCCCCCC
Confidence 999987766554443
No 124
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.00021 Score=62.41 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred cccEEEEecCCC-CCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdp-s~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.++.|++.||.+ ..|..|+++|+- -|-+-..++|+.. -|.|||-|.+.++|+.||..|+..=+.+ +||||
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALV-FGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceE-CCcEE
Confidence 478999999999 999999887763 4556667787742 3899999999999999999998632222 89999
Q ss_pred eeecCCC
Q 005739 593 LGSIGTP 599 (680)
Q Consensus 593 ~~s~~~~ 599 (680)
.-.++.+
T Consensus 85 ~V~~a~~ 91 (102)
T 1x4d_A 85 RVHLSQK 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9988764
No 125
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.36 E-value=0.00048 Score=59.94 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=56.2
Q ss_pred cccEEEEecC-CCCCchhHHHHHHHHHHhccc---cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 514 HGTLVVLENL-DPSYTSTVVEDLVWHAFKENC---SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 514 ~G~lvllqNL-dps~ts~eVedlv~~a~ke~c---~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
-.++|+|.|| +|.==..+.++-|+..|..-- .++++.....+...-|.|||-|.+.++|+.||..|+..-+ +|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---GG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---TT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---CC
Confidence 4678999999 442112445666666665422 3333321111223469999999999999999999999877 89
Q ss_pred ceeeeecCCC
Q 005739 590 RPLLGSIGTP 599 (680)
Q Consensus 590 Rpl~~s~~~~ 599 (680)
|+|..+++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999998754
No 126
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.35 E-value=0.00048 Score=60.60 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=64.4
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+..+-|+|.||.+..|..++.+++-. |-+-...+++... .+.-+-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 114 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDR-ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRL 114 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEET-TTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 45678999999999999998887754 4433444554321 1233467899999999999999999997554 79999
Q ss_pred eeecCCCccCC
Q 005739 593 LGSIGTPCFTG 603 (680)
Q Consensus 593 ~~s~~~~~~p~ 603 (680)
.-.++.+....
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99988765443
No 127
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.34 E-value=0.00027 Score=64.67 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=63.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++.|+|.||.+..|..+|.+++-. |-+-..++|+... .+--+-|-|||-|.+.++|+.||..|+..-| +||+|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDR-RTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEEEecC-CCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 35788999999999999888877643 3333455555321 1223458999999999999999999998655 89999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
...++.+..|.+
T Consensus 145 ~V~~a~~~~~~~ 156 (165)
T 1rk8_A 145 QVDWCFVKGPKR 156 (165)
T ss_dssp EEEESEECC---
T ss_pred EEEEecCCCCCC
Confidence 999997766644
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.33 E-value=0.00049 Score=58.00 Aligned_cols=76 Identities=8% Similarity=0.091 Sum_probs=59.0
Q ss_pred hhccccEEEEecCCC-CCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 511 AHEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 511 a~e~G~lvllqNLdp-s~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
....++-|++.||.+ ..|..++++++-. |-.--..+| ..|-|||-|.+.+.|+.||..|+..-| +|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMN---FG 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEE---TT
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence 344678899999999 9999888877643 333333444 279999999999999999999998755 79
Q ss_pred ceeeeecCCC
Q 005739 590 RPLLGSIGTP 599 (680)
Q Consensus 590 Rpl~~s~~~~ 599 (680)
|+|.-.++.+
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9998887754
No 129
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.33 E-value=0.00037 Score=67.73 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=63.1
Q ss_pred hhhccccEEEEecCCCC-CchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 510 VAHEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps-~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
.....++.|++.||+++ .|..++.+++-. |-.-..++++....-+....|-|||-|.+.++|+.|+ .|+...| +
T Consensus 205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~---~ 279 (292)
T 2ghp_A 205 SATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL---G 279 (292)
T ss_dssp --CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE---T
T ss_pred ccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE---C
Confidence 45667899999999999 888777766542 3333345555432212345688999999999999999 9998765 8
Q ss_pred CceeeeecCCCc
Q 005739 589 GRPLLGSIGTPC 600 (680)
Q Consensus 589 gRpl~~s~~~~~ 600 (680)
||+|.-+++.|.
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999999998874
No 130
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.0007 Score=58.31 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=57.1
Q ss_pred ccEEEEecCCCCCc--h-----hHHHHHHHHHHhccc---cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 515 GTLVVLENLDPSYT--S-----TVVEDLVWHAFKENC---SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 515 G~lvllqNLdps~t--s-----~eVedlv~~a~ke~c---~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
.+.|+|.||-..-. . .++|+-|+..|.+-- .+.|..+ ..-|-|||-|.+.+.|+.||..|+..-|
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-----~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-----HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-----CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-----CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 67899999922211 1 235677888887542 2233211 2479999999999999999999998755
Q ss_pred eecCCceeeeecCCCcc
Q 005739 585 LLSNGRPLLGSIGTPCF 601 (680)
Q Consensus 585 ~ls~gRpl~~s~~~~~~ 601 (680)
+||+|...++.|..
T Consensus 90 ---~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 ---GGRQITAQAWDGTT 103 (112)
T ss_dssp ---TTEECEEEECCSCC
T ss_pred ---CCcEEEEEEeCCCC
Confidence 79999999987743
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00026 Score=58.59 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=59.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++++++.. |-.-...+++.. .-+-...|-|||-|.+.+.|+.||..|+.--| +||+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 34578999999999999998877632 222222344422 12223358899999999999999999998755 89999
Q ss_pred eeecCCC
Q 005739 593 LGSIGTP 599 (680)
Q Consensus 593 ~~s~~~~ 599 (680)
.-.++..
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9888754
No 132
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00022 Score=60.86 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=60.6
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
.....+-|++.||.+..|..+|.+++-. |-.-...+++.. ..+--+-|-|||-|.+.+.|+.|| .|+.--| +||
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~ 94 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGV 94 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEec-CCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCe
Confidence 3445688999999999999888777632 333334455432 223345689999999999999999 9987544 899
Q ss_pred eeeeecCCC
Q 005739 591 PLLGSIGTP 599 (680)
Q Consensus 591 pl~~s~~~~ 599 (680)
+|.-.++.+
T Consensus 95 ~l~V~~a~~ 103 (114)
T 2cq4_A 95 PIIVQASQA 103 (114)
T ss_dssp EEEEEEHHH
T ss_pred EEEEEecCC
Confidence 998877654
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.29 E-value=0.00032 Score=57.61 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=56.6
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
.+-|++.||.+..|..+|++++.. |-.-...+++.. ...--..|-|||-|.+.+.|+.||..|+.--| +||+|.-
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEE
Confidence 367999999999999998877532 111112334332 11223357899999999999999999998655 8999987
Q ss_pred ecCC
Q 005739 595 SIGT 598 (680)
Q Consensus 595 s~~~ 598 (680)
.+..
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 7654
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.28 E-value=0.00087 Score=58.54 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=74.3
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
|-|++.||.|..|..++.+++.. |-+-...+++.. ..+..+-|.|||-|.+.+.|+.|+..|+.--+ +||||..+
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~ 77 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVS 77 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---CCceEEEE
Confidence 56899999999999998877653 223334555442 22333458999999999999999999987444 89999999
Q ss_pred cCCCccC--CCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 596 IGTPCFT--GKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 596 ~~~~~~p--~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
.+.|..+ .....|+|.+.-+-. +.++++..+
T Consensus 78 ~~~~~~~~~~~~~l~v~nl~~~~t----~~~l~~~f~ 110 (167)
T 1fxl_A 78 YARPSSASIRDANLYVSGLPKTMT----QKELEQLFS 110 (167)
T ss_dssp ECCCCCGGGTTCEEEEESCCTTCC----HHHHHHHHG
T ss_pred ecCCCcccCCCCcEEECCCCCcCC----HHHHHHHHH
Confidence 8876544 335578887765432 344555444
No 135
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.00043 Score=54.59 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=53.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeecC
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG 597 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~~ 597 (680)
|++.||.+..|..++.+++-. |-.--..+++. ..-+..+.|-|||-|.+.++|+.|+..++ . . -+||+|....+
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~--~-~~g~~l~v~~a 76 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMR-DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H--E-LDSKTIDPKVA 76 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTT-TSCCCCEEEEC-CCCSSSCSSEEEECCCCTTHHHHHHHTTT-C--C-CSSCCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEec-CCCCCCcCceEEEEEcCHHHHHHHHHhCC-C--c-cCCEEEEEEec
Confidence 678999999999998776643 22222334432 22334567899999999999999999999 2 2 38999876554
No 136
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.25 E-value=0.00057 Score=66.42 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=75.2
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHh-ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~k-e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..+-|++.||.+..|..++.+++.. |- +-...+++.... ..+.|-|||-|.+.+.|+.|+..|+...| +||+|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 189 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGLKI---EGYTL 189 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEE
Confidence 4788999999999999998887765 44 444555554332 44678999999999999999999997655 89999
Q ss_pred eeecCCCccC---------CCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 593 LGSIGTPCFT---------GKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 593 ~~s~~~~~~p---------~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
.-.++.|... .....|+|+|.-+.+ ...++++..+
T Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~---t~~~l~~~F~ 233 (292)
T 2ghp_A 190 VTKVSNPLEKSKRTDSATLEGREIMIRNLSTELL---DENLLRESFE 233 (292)
T ss_dssp EEEECCCC---------CCTTTEEEEEEECTTTC---CHHHHHHHHG
T ss_pred EEEECCCCcccccccccCCCCceEEEECCCcccC---CHHHHHHHHh
Confidence 9888765432 234578888875522 2345555544
No 137
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.24 E-value=0.0005 Score=63.50 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=63.2
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHh--ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFK--ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~k--e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
+..+-|++-||.+..|..++.+++ ..|- +-..++++... .+--.-|-|||-|.+.++|+.||..|+..-| +||
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~-~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr 127 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENR-ANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGE 127 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCe
Confidence 456889999999999999999988 4455 66677776431 1122356799999999999999999997755 899
Q ss_pred eeeeecCCC
Q 005739 591 PLLGSIGTP 599 (680)
Q Consensus 591 pl~~s~~~~ 599 (680)
+|.-.++.|
T Consensus 128 ~l~V~~a~~ 136 (156)
T 3n9u_C 128 KVDVRPATR 136 (156)
T ss_dssp ECEEEECCH
T ss_pred EeEEEEcCC
Confidence 999887764
No 138
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00048 Score=57.80 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=62.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+..+-|++.||++..|..++.+++-. |-+-...+++.. ..+.-+-|-|||-|.+.++|+.||.. + |.. -+||+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~a~~~-~-~~~--~~g~~l 87 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVLAS-R-PHT--LDGRNI 87 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEEC-SSSCCEEEEEEEEESSTTHHHHHHHH-C-SEE--ETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-CCCCCcceEEEEEECCHHHHHHHHHh-C-CCe--ECCEEE
Confidence 45677899999999999998877643 333334455432 22334568899999999999999998 4 433 289999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
...++.|..+..
T Consensus 88 ~V~~a~~~~~~~ 99 (105)
T 2dh8_A 88 DPKPCTPRGMQP 99 (105)
T ss_dssp BCCCSCCSSCCT
T ss_pred EEEEccCCCCCC
Confidence 999997765443
No 139
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.24 E-value=0.002 Score=56.98 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=73.6
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhc-cccc----eeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeec
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSA----KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 587 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke-~c~A----kmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls 587 (680)
++.+-|++.||.++.|..++.+++...... .|.. .+.... .....|-|||-|.+.+.|+.|+ .|+.--|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~--~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--- 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--INQDKNFAFLEFRSVDETTQAM-AFDGIIF--- 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE--EETTTTEEEEEESSHHHHHHHG-GGTTCEE---
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE--ecCCCCEEEEEeCCHHHHHHHH-HhCCcEe---
Confidence 467889999999999999999988775321 1110 111111 1123799999999999999999 8876433
Q ss_pred CCceeeeecCCCccC--CCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 588 NGRPLLGSIGTPCFT--GKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 588 ~gRpl~~s~~~~~~p--~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
+||+|......+..+ +....|+|.|.-+-. ..++++..+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t----~~~l~~~f~ 116 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLN----DDQVKELLT 116 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCC----HHHHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCC----HHHHHHHHH
Confidence 899999887755433 346678888765433 344555444
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.23 E-value=0.00086 Score=58.43 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=57.8
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||++..|..++.+++-. |-.--..+++ +...+.-+-|-|||-|.+.++|+.||..|+..-| +||+|.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 136 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIP-LDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 136 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECC-CCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEe-ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 4788999999999999888877633 3222233433 3333445678999999999999999999987543 799987
Q ss_pred eec
Q 005739 594 GSI 596 (680)
Q Consensus 594 ~s~ 596 (680)
-.+
T Consensus 137 v~~ 139 (140)
T 2ku7_A 137 VNL 139 (140)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 141
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.23 E-value=0.0005 Score=57.30 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=58.3
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhcccc--------ceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS--------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~--------AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
...+-|++.||++..|..++.+++-. |-.-.. .+++.. .-+--..|-|||-|.+.+.|+.||..|+..-|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEEC-TTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEec-CCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45688999999999999888877642 222222 444432 12233458999999999999999999997754
Q ss_pred eecCCceeeeecC
Q 005739 585 LLSNGRPLLGSIG 597 (680)
Q Consensus 585 ~ls~gRpl~~s~~ 597 (680)
+||+|.-.++
T Consensus 89 ---~g~~l~V~~A 98 (99)
T 2la6_A 89 ---SGNPIKVSFA 98 (99)
T ss_dssp ---SSSBCEEEEC
T ss_pred ---CCcEEEEEec
Confidence 7999887654
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00033 Score=60.40 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=58.5
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhcc-ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~-c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
...+-|++.||.+..|..+|.+++-. |-.- ..++|+... +--..|-|||-|.+.++|+.||.. +..-| +||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL-HRKKL---NGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeE
Confidence 45678999999999999998777643 2222 235555433 445678999999999999999987 44322 8999
Q ss_pred eeeecCCC
Q 005739 592 LLGSIGTP 599 (680)
Q Consensus 592 l~~s~~~~ 599 (680)
|.-..+.+
T Consensus 86 i~v~~a~~ 93 (114)
T 2cpy_A 86 AFVHVVTL 93 (114)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 98877654
No 143
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.21 E-value=0.0005 Score=59.79 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=59.9
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
.+-|++-||++..|..++.+++-. |-+-..++++- ...+--+-|-|||-|.+.++|+.||..||..-| +||+|.-
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~-d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~V 80 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILL-HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIHA 80 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEE-CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEE
Confidence 467899999999999998887632 33334455542 223334467899999999999999999998876 8999988
Q ss_pred ecCC
Q 005739 595 SIGT 598 (680)
Q Consensus 595 s~~~ 598 (680)
.++.
T Consensus 81 ~~a~ 84 (110)
T 3s8s_A 81 QLDI 84 (110)
T ss_dssp EECS
T ss_pred EECC
Confidence 7653
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.19 E-value=0.00081 Score=59.16 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=74.3
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
++-|++.||.++.|..++.+++.. |-.--..+++.. .-+..+.|.|||-|.+.+.|+.|+..|+.--| +||+|..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v 77 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---RNKRLKV 77 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEe-CCCCccceEEEEEECCHHHHHHHHHhcCCCEe---CCcEEEE
Confidence 567899999999999888777643 222223444332 12233558999999999999999999987544 8999999
Q ss_pred ecCCCccCC--CCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 595 SIGTPCFTG--KQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 595 s~~~~~~p~--k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
..+.|..+. ....|+|.+.-+-. ..++++..+
T Consensus 78 ~~~~~~~~~~~~~~l~v~nl~~~~t----~~~l~~~f~ 111 (168)
T 1b7f_A 78 SYARPGGESIKDTNLYVTNLPRTIT----DDQLDTIFG 111 (168)
T ss_dssp EECCCCSSTTTTCEEEEESCCTTCC----HHHHHHHHT
T ss_pred EecCCCcccCCCCCEEEeCCCCCCC----HHHHHHhhh
Confidence 888766543 34567887765432 345565554
No 145
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.18 E-value=0.001 Score=60.82 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=58.5
Q ss_pred ccEEEEecCCC-CCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 515 GTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 515 G~lvllqNLdp-s~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
++.|++.||.| +.|..++.+++-. |-.-...+++... -|-|||-|.+.+.|+.|+..|+..-| +||+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---HGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC---SSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee---cCeEEE
Confidence 57899999999 9999888877643 3333344554322 78899999999999999999998655 899998
Q ss_pred eecCCC
Q 005739 594 GSIGTP 599 (680)
Q Consensus 594 ~s~~~~ 599 (680)
...+.+
T Consensus 73 v~~a~~ 78 (198)
T 1qm9_A 73 ITLSKH 78 (198)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 877653
No 146
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.17 E-value=0.00061 Score=65.01 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=61.0
Q ss_pred cccEEEEecCC-CCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 514 HGTLVVLENLD-PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 514 ~G~lvllqNLd-ps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.++.|++.||+ ++.|..++.+|+- .|-.-..++++.. +-|.|||-|.+.++|+.||..|+.--| +||||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM---FGQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE---CCceE
Confidence 57899999999 5899988888763 3555556777642 369999999999999999999998766 79999
Q ss_pred eeecCC
Q 005739 593 LGSIGT 598 (680)
Q Consensus 593 ~~s~~~ 598 (680)
.-.+..
T Consensus 73 ~v~~s~ 78 (205)
T 3tyt_A 73 NVCVSK 78 (205)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 887663
No 147
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.17 E-value=0.001 Score=57.17 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=60.0
Q ss_pred HHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeec
Q 005739 508 IRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 587 (680)
Q Consensus 508 ~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls 587 (680)
+....+.++-|++.||+++.|..++.+++-. |-.-...+|+. ...+--+-|-|||-|.+.+.|+.||..++ .. -
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~-~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~-l 91 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMR-DPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HE-L 91 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECC-CTTTCCCTTCEEEEESSHHHHHHHHHSSC---EE-E
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEE-CCCCCCcCcEEEEEECCHHHHHHHHHHCC---Cc-C
Confidence 3344567888999999999999887776532 22222444443 22233456899999999999999999874 33 3
Q ss_pred CCceeeeecCCCccCC
Q 005739 588 NGRPLLGSIGTPCFTG 603 (680)
Q Consensus 588 ~gRpl~~s~~~~~~p~ 603 (680)
+||+|...++.|....
T Consensus 92 ~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 92 DSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp TTEEEEEEECCCCCCC
T ss_pred CCEEEEEEEccCCCCC
Confidence 8999999998876543
No 148
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.17 E-value=0.0016 Score=55.37 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=56.6
Q ss_pred cccEEEEecCCCCCchhH--HHHHHHHHHhcc---ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 514 HGTLVVLENLDPSYTSTV--VEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~e--Vedlv~~a~ke~---c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
.++-|++.||.+..+..- .++-++..|..- -.++|+ + -+...-|-|||-|.+.+.|+.||..|+..-| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~---~ 87 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL---D 87 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-C--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---S
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-C--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc---C
Confidence 367899999998763211 344455555543 244555 2 2234568999999999999999999998665 7
Q ss_pred Cc-eeeeecCCC
Q 005739 589 GR-PLLGSIGTP 599 (680)
Q Consensus 589 gR-pl~~s~~~~ 599 (680)
|| +|.-+++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 998887753
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00055 Score=57.01 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=57.8
Q ss_pred ccccEEEEecCCC-CCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 513 EHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdp-s~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
...+-|++.||.+ ..|..++.+++-. |-.-...++ .-|-|||-|.+.++|+.||..|+..-| +||+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI---------KNAFGFIQFDNPQSVRDAIECESQEMN---FGKK 74 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSC---BTTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCee---CCcE
Confidence 3467788999999 9999988777643 222233343 169999999999999999999998765 6999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|.-.++.+.
T Consensus 75 l~V~~a~~~ 83 (96)
T 2kvi_A 75 LILEVSSSN 83 (96)
T ss_dssp BCEEEEECC
T ss_pred EEEEEcCcC
Confidence 988887554
No 150
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.16 E-value=0.0012 Score=57.83 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=56.7
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 517 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 517 lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
=+|+-||+|+-|..++.+|+-+. -.--+.+++. +-|=|||-|.|.+-|+.||..|| +|- -+||||...+
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln-~~~--l~gr~I~V~~ 77 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYL-------NQGIALCKYTTREEANKAQMALN-NCV--LANTTIFAES 77 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHT-TEE--ETTEEEEEEC
T ss_pred eEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhc-CCE--ECCcEEEEEE
Confidence 46789999999998888887643 2333344543 68999999999999999999999 566 3799999988
Q ss_pred CC
Q 005739 597 GT 598 (680)
Q Consensus 597 ~~ 598 (680)
++
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00082 Score=58.64 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
|-|++.||.++.|..++.+++.. |-.--..+++... .....|-|||-|.+.+.|+.|+..|+.-.| +||+|...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEEE
Confidence 45899999999999988877642 3333345555433 244678999999999999999999998766 79999988
Q ss_pred cCCCccCC----CCCceeeeeeehhHHHHHHHHHHhhh
Q 005739 596 IGTPCFTG----KQSKFVGHLALDKLKFQMQREMREAV 629 (680)
Q Consensus 596 ~~~~~~p~----k~~~f~GH~~i~k~~~~~qremr~av 629 (680)
.+.+..+. ....|+|.|.-+-. ..++++..
T Consensus 75 ~~~~~~~~~~~~~~~l~v~nl~~~~t----~~~l~~~f 108 (166)
T 3md3_A 75 WAFQSQQSSSDDTFNLFVGDLNVNVD----DETLRNAF 108 (166)
T ss_dssp ECCCCCCCCCTTCEEEEEESCCTTCC----HHHHHHHH
T ss_pred EcCCCCCCCCCCCceEEECCCCCCCC----HHHHHHHH
Confidence 87655432 23467777654432 24555554
No 152
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.10 E-value=0.00077 Score=54.59 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=56.8
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
.....+-|++.||++..|..++.+++.. |-.-...+|+.. ..+.-+-|-|||-|.+.++|+.|+.. +. .. -+||
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~-~~-~~--~~g~ 80 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMD-PNTGRSRGFGFILFKDAASVEKVLDQ-KE-HR--LDGR 80 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEEC-TTTCCEEEEEEEEESSTHHHHHHHHS-SC-EE--ETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeec-CCCCccccEEEEEECCHHHHHHHHHh-CC-CE--ECCE
Confidence 3456788999999999999998888732 333345555433 22334467899999999999999955 43 32 3899
Q ss_pred eeeeec
Q 005739 591 PLLGSI 596 (680)
Q Consensus 591 pl~~s~ 596 (680)
+|.-..
T Consensus 81 ~i~v~~ 86 (87)
T 3s7r_A 81 VIDPKK 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 986543
No 153
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00021 Score=62.38 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=57.3
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
...++-|++.||.+..|..+|.+++-. |-.-..+.+|.... +--..|-|||-|.+.+.|+.||. |+...| +||+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcE
Confidence 456789999999999998887765521 22222223433221 23346789999999999999999 876544 8999
Q ss_pred eeeecCCC
Q 005739 592 LLGSIGTP 599 (680)
Q Consensus 592 l~~s~~~~ 599 (680)
|.-..+.+
T Consensus 96 i~V~~a~~ 103 (124)
T 1wel_A 96 IQVHPITK 103 (124)
T ss_dssp BEEEEECH
T ss_pred EEEEECCH
Confidence 88776543
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.09 E-value=0.00084 Score=60.79 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=62.2
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++-. |-.-...+++... -+.-..|-|||-|.+.+.|+.|+..|+...| +||+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKL 186 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECT-TTCSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecC-CCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 45688999999999998887766643 2233344554322 1223467899999999999999999998665 89999
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
.-+++.|.
T Consensus 187 ~v~~a~~~ 194 (198)
T 2yh0_A 187 LVQRASVG 194 (198)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99988764
No 155
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.09 E-value=0.003 Score=60.08 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=62.0
Q ss_pred ccccEEEEecCCC-CCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 513 EHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdp-s~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
..++-|++.||.+ ..|..++.+++.. |-.-...+++... -|-|||-|.+.+.|+.||..|+.--| +||+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~ 101 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---HGKP 101 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---SSSB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---CCeE
Confidence 4567899999999 9999999888743 4444456665432 68899999999999999999998655 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|....+.+.
T Consensus 102 l~v~~a~~~ 110 (229)
T 2adc_A 102 IRITLSKHQ 110 (229)
T ss_dssp CEEECCSCC
T ss_pred EEEEEecCc
Confidence 999877643
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.08 E-value=0.0019 Score=58.49 Aligned_cols=81 Identities=9% Similarity=0.069 Sum_probs=57.2
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhc-cccc----eeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSA----KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke-~c~A----kmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
..+-|++.||.++.|..++.+++.....- .|.. .++.. ....+.|.|||-|.+.+.|+.|+ .|+.--| +
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~--~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~---~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV--QINQDKNFAFLEFRSVDETTQAM-AFDGIIF---Q 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEE--EEETTTTEEEEEESCSHHHHHHG-GGTTEEE---T
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEe--EecCCCCEEEEEeCCHHHHHHHH-HhcCCEE---c
Confidence 45779999999999999999888765321 1110 11111 11234799999999999999999 8875433 8
Q ss_pred CceeeeecCCCc
Q 005739 589 GRPLLGSIGTPC 600 (680)
Q Consensus 589 gRpl~~s~~~~~ 600 (680)
||+|.-....+.
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999988876544
No 157
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.08 E-value=0.001 Score=57.70 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=51.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
.++-|++.||.+..|..++.+++.. |-+-..++|+.. |-|||-|.+.+.|+.||..|+..-| +||+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBC---CCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEE---CCcE
Confidence 4567889999999999999887642 334445565533 9999999999999999999998755 7887
No 158
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.07 E-value=0.00039 Score=67.29 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=64.5
Q ss_pred ccccEEEEecCCCCC-chhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 513 EHGTLVVLENLDPSY-TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 513 e~G~lvllqNLdps~-ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
..++-|++.||++++ |..++.+++- .|-.-..++++... +....|.|||-|.+.+.|+.|+..|+...| +||+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 255 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL---GGSH 255 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCeE
Confidence 457889999999998 6677766653 23333345554433 344568999999999999999999998876 9999
Q ss_pred eeeecCCCccC
Q 005739 592 LLGSIGTPCFT 602 (680)
Q Consensus 592 l~~s~~~~~~p 602 (680)
|..+++.|..+
T Consensus 256 l~v~~a~~~~~ 266 (284)
T 3smz_A 256 LRVSFCAPGPP 266 (284)
T ss_dssp CEEEECCSSSC
T ss_pred EEEEEecCCCc
Confidence 99999988765
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.0007 Score=60.10 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=61.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccc--eeccC--CCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSA--KMIPR--VAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~A--kmI~~--~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
...+-|++.||++..|..++.+++.. |-.--.+ ++|-. ...+-..-|.|||-|.+.++|+.||..|+..-| +
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---F 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---C
Confidence 34678999999999999888877643 2211111 11111 011344578999999999999999999987655 8
Q ss_pred CceeeeecCCCccCCC
Q 005739 589 GRPLLGSIGTPCFTGK 604 (680)
Q Consensus 589 gRpl~~s~~~~~~p~k 604 (680)
||+|.-.++.+.-|..
T Consensus 119 g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 119 GKPMVVQFARSARPKQ 134 (143)
T ss_dssp TEECEEEECCCSCC--
T ss_pred CcEEEEEECCCCCCcc
Confidence 9999999997765543
No 160
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.06 E-value=0.0016 Score=51.12 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=52.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
|++.||.+..|..++.+++-. |-.--..+|+ +..-+..+.|-|||-|.+.++|+.|+.. + +.. -+||+|.-..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-~~~--~~g~~l~v~~ 74 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGG-FGEVESIELP-MDNKTNKRRGFCFITFKEEEPVKKIMEK-K-YHN--VGLSKCEIKV 74 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHH-HSCCSEECCC-CSCCCSSSCCCEEEECSSSHHHHHHHTT-S-SCC--BTTBCCCEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE-ecCCCCCcCCEEEEEECCHHHHHHHHHh-C-CCe--ECCEEEEEEE
Confidence 578999999999998888754 3333334443 3333455679999999999999999985 3 333 3899886543
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.03 E-value=0.0014 Score=57.75 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=59.7
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||+++.|..++.+++-. |-.-..++++.. ..+..+-|-|||-|.+.++|+.|+. ++ |.. + +||+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~-~~~-~-~g~~i~ 159 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-NK-FID-F-KDRKIE 159 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-CS-EEC-S-SSSCEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-CC-CEE-e-CCeEEE
Confidence 4567899999999999998877642 333345555433 2234456899999999999999997 64 332 2 899999
Q ss_pred eecCCCc
Q 005739 594 GSIGTPC 600 (680)
Q Consensus 594 ~s~~~~~ 600 (680)
-+++.|.
T Consensus 160 V~~a~pk 166 (167)
T 2cjk_A 160 IKRAEPR 166 (167)
T ss_dssp EEECCCC
T ss_pred EeecCCC
Confidence 9988774
No 162
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0015 Score=55.78 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=61.6
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
+..+-|++.||.+..|..++.+++-. |-.-...+++.. ..+-.+-|-|||-|.+.+.|+.||.. .|.. -+||+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~--~~~~--~~g~~l 98 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMAA--RPHS--IDGRVV 98 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHTS--CSEE--ETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC-CCCCCcCceEEEEeCCHHHHHHHHHh--CCcE--ECCEEE
Confidence 45678999999999999887776522 222234444432 22334568999999999999999988 4444 289999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-..+.|.....
T Consensus 99 ~V~~a~~~~~~~ 110 (116)
T 1x4b_A 99 EPKRAVAREESG 110 (116)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEECCCCccCC
Confidence 999987765443
No 163
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.01 E-value=0.00094 Score=64.63 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=76.6
Q ss_pred HHHHHhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 505 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 505 ee~~~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
.++++......+-|++-||.++.|..++.+++... - -...++ ..+.|.|||-|.+.+.|+.|+..|+.-.|
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G-i~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 82 (284)
T 3smz_A 12 LEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDY-E-LKYCFV-------DKYKGTAFVTLLNGEQAEAAINAFHQSRL 82 (284)
T ss_dssp HHHHHHHHHCCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEE-------ETTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HhhhhccCCCCCEEEEeCCCCCCCHHHHHHHHHHc-C-CEEEEE-------ecCCCEEEEEeCCHHHHHHHHHHcCCCee
Confidence 34566777788999999999999999988875442 1 112222 45679999999999999999999998765
Q ss_pred eecCCceeeeecCCCccCCCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 585 LLSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 585 ~ls~gRpl~~s~~~~~~p~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
+||+|.-... |.....|+|.|.-+=. ..++++..+
T Consensus 83 ---~g~~i~v~~~----~~~~~l~v~nlp~~~t----~~~l~~~f~ 117 (284)
T 3smz_A 83 ---RERELSVQLQ----PTDALLCVANLPPSLT----QQQFEELVR 117 (284)
T ss_dssp ---TTEECEEEEC----CCSCEEEEESCCTTCC----HHHHHHHHG
T ss_pred ---CCeEEEEEec----CCCCEEEEcCCCCcCC----HHHHHHHHH
Confidence 7999988763 3445677887754432 344554443
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.99 E-value=0.0026 Score=58.37 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=76.0
Q ss_pred HhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 509 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 509 ~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
..+.+..+-|++.||.++.|..++.+++.. |-.-...+|+.. ..+..+.|-|||-|.+.+.|+.|+..|+.--| +
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---~ 96 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---G 96 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---C
T ss_pred CcccCcCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHccCCee---C
Confidence 346667888999999999998888777632 222334555432 23445689999999999999999999987544 8
Q ss_pred CceeeeecCCCcc-------------CCCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 589 GRPLLGSIGTPCF-------------TGKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 589 gRpl~~s~~~~~~-------------p~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
||+|......... +.....|+|.|.-+=. ..++++..+
T Consensus 97 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t----~~~l~~~f~ 147 (216)
T 2qfj_A 97 GRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLS----DDDIKSVFE 147 (216)
T ss_dssp -CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCC----HHHHHHHHT
T ss_pred CeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCC----HHHHHHHHh
Confidence 9999887665432 2234677777765422 345555443
No 165
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.00052 Score=55.38 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=56.0
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||.+..|..++.+++- .|-.-...+|+. ...+..+-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAIL-DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEEC-CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEe-cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEE
Confidence 4578899999999999988776653 222223344443 233455678899999999999999999986644 67776
Q ss_pred eee
Q 005739 593 LGS 595 (680)
Q Consensus 593 ~~s 595 (680)
-.+
T Consensus 78 ~~~ 80 (85)
T 1x4e_A 78 KQS 80 (85)
T ss_dssp CSS
T ss_pred eec
Confidence 443
No 166
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.98 E-value=0.00048 Score=58.20 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=58.4
Q ss_pred cccEEEEecCCC------CCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeec
Q 005739 514 HGTLVVLENLDP------SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 587 (680)
Q Consensus 514 ~G~lvllqNLdp------s~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls 587 (680)
.++.|++.||.+ ..|..++.+++- .|-.-..++|+. ...+--.-|-|||-|.+.+.|+.||..|+..-|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~-d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--- 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPI-DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--- 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCE-ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEE-cCCCCccceEEEEEECCHHHHHHHHHHhCCccc---
Confidence 468899999987 677666666653 233334455442 222334568999999999999999999997655
Q ss_pred CC-ceeeeecCCC
Q 005739 588 NG-RPLLGSIGTP 599 (680)
Q Consensus 588 ~g-Rpl~~s~~~~ 599 (680)
+| |+|.-+++.|
T Consensus 80 ~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 80 DLKHRLFLYTMKD 92 (100)
T ss_dssp SSSCBCEEEESHH
T ss_pred CCCeEEEEEECch
Confidence 66 9999887765
No 167
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00078 Score=59.07 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=56.8
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++.|++.||..+-|..+|.+++-.. .-..++|+-... --..|-|||-|.+.+.|+.|| .++..-| +||+|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~--g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i 85 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHV--GRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYV 85 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTT--CCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCC--CCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEE
Confidence 446789999999999999998887653 233455543221 234689999999999999999 6775433 89998
Q ss_pred eeecC
Q 005739 593 LGSIG 597 (680)
Q Consensus 593 ~~s~~ 597 (680)
.-..+
T Consensus 86 ~V~~a 90 (109)
T 2dnn_A 86 EVSPA 90 (109)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66554
No 168
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.96 E-value=0.0015 Score=57.72 Aligned_cols=110 Identities=14% Similarity=0.172 Sum_probs=76.2
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCC--CCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ss--p~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
.+-|++-||.++.|..++.+++.. |-.-...+++.... .. .+.|-|||-|.+.+.|+.|+..|+..-++-..++|+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDRS-QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEECS-SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCC-CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 466899999999999998887743 33334555553322 21 456899999999999999999999877755557888
Q ss_pred eeecCCCccC---CCCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 593 LGSIGTPCFT---GKQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 593 ~~s~~~~~~p---~k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
......+..+ .....|+|+|.-+-. ..++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t----~~~l~~~F~ 117 (175)
T 3nmr_A 81 QMKPADSEKNNAVEDRKLFIGMISKKCT----ENDIRVMFS 117 (175)
T ss_dssp EEEECGGGCCSCGGGSEEEEESCCTTCC----HHHHHHHHG
T ss_pred EEccccccccccCCCCeEEEcCCCCcCC----HHHHHHHHH
Confidence 7776654433 345678888765533 344555443
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.93 E-value=0.00087 Score=63.12 Aligned_cols=76 Identities=28% Similarity=0.289 Sum_probs=58.8
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 517 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 517 lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
-|++.||+++.|..++.+++. .|-.-..++++... ...-|-|||-|.+.++|+.||..|+.--| +||+|.-++
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~Ai~~lng~~~---~g~~i~V~~ 177 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFVGR 177 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET---TEEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred cceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC---CCCceEEEEEeCCHHHHHHHHHHhCCCEE---CCEEEEEEE
Confidence 478999999999998887764 34444566665432 12368899999999999999999986543 899998887
Q ss_pred CCC
Q 005739 597 GTP 599 (680)
Q Consensus 597 ~~~ 599 (680)
+.|
T Consensus 178 a~~ 180 (213)
T 4f02_A 178 FKS 180 (213)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 170
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.92 E-value=0.0015 Score=63.49 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=65.9
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
.....+-|++-||.++.|..++.+++. .|-.-...+|+. .-|-|||-|.+.+.|+.|+..|+.-.| +||
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~-------~kg~afV~f~~~~~A~~A~~~l~g~~i---~g~ 86 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINR-------DRGFGFIRLESRTLAEIAKAELDGTIL---KSR 86 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCEE---TTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeC-------CCcEEEEEECCHHHHHHHHHHcCCcEE---CCc
Confidence 345678899999999999999888763 344444555542 369999999999999999999997755 799
Q ss_pred eeeeecCCCccCCCCCceeeeee
Q 005739 591 PLLGSIGTPCFTGKQSKFVGHLA 613 (680)
Q Consensus 591 pl~~s~~~~~~p~k~~~f~GH~~ 613 (680)
+|...+..+. ...|+|.|.
T Consensus 87 ~l~v~~a~~~----~~l~v~nl~ 105 (261)
T 3sde_A 87 PLRIRFATHG----AALTVKNLS 105 (261)
T ss_dssp ECEEEECCCS----SEEEEESCC
T ss_pred eeEeeecccC----CcccccCCC
Confidence 9888776542 334555543
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.90 E-value=0.0013 Score=58.27 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=58.1
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
++-|++.||.++.|..++.+++-. |-.-..++++... -+.-.-|-|||-|.+.++|+.|+..|+..-| +||+|.-
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 168 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLV 168 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECT-TTCSEEEEEEEEESSTTHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 677899999999998887777653 3333345554332 1223457899999999999999999997655 8999987
Q ss_pred ecC
Q 005739 595 SIG 597 (680)
Q Consensus 595 s~~ 597 (680)
+++
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 172
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0019 Score=53.94 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=61.0
Q ss_pred hhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 510 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
.+.+..+-|++.||.+..|..++++++-. |-.--..+|+.. ..+.-+-|-|||-|.+.+.|+.||.. +. .-+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~---~~--~~~g 82 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMSQ---RH--MIDG 82 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHS---CE--EETT
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEec-CCCCCccceEEEEECCHHHHHHHHHc---CC--eeCC
Confidence 34566778899999999999988877633 322223444432 12233457899999999999999984 33 3489
Q ss_pred ceeeeecCCCccC
Q 005739 590 RPLLGSIGTPCFT 602 (680)
Q Consensus 590 Rpl~~s~~~~~~p 602 (680)
|+|.-.++.+...
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 9999999877543
No 173
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.87 E-value=0.0015 Score=56.34 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=56.3
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++-||.++.|..++.+++-. |-.-..++|+.... .-+-|-|||.|.+.++|+.||. ++ |.. -+||+|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~--g~~rG~aFV~F~~~e~a~~Ai~-~~-~~~--~~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKFVE-TP-GQK--YKETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCT--TSCCCEEEEEESSHHHHHHHHT-SS-CCC--CTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCC--CCCccEEEEEECCHHHHHHHHH-cC-CCE--ECCEEE
Confidence 34567889999999999888876642 33334566654433 5567999999999999999998 64 432 289998
Q ss_pred eeec
Q 005739 593 LGSI 596 (680)
Q Consensus 593 ~~s~ 596 (680)
.-..
T Consensus 82 ~V~~ 85 (103)
T 1s79_A 82 LILF 85 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7553
No 174
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.86 E-value=0.0014 Score=63.98 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHh--ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFK--ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~k--e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
..+-|+|-||.+..|..++++++. .|- +-..++++-.. .+--.-|-|||-|.+.++|+.||..|+..-| +||+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~-~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECT-TTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEE
Confidence 566799999999999999888873 344 44556655321 1222345699999999999999999998765 8999
Q ss_pred eeeecCCCc
Q 005739 592 LLGSIGTPC 600 (680)
Q Consensus 592 l~~s~~~~~ 600 (680)
|...++.+.
T Consensus 142 l~V~~a~~~ 150 (229)
T 3q2s_C 142 PVVTPVNKQ 150 (229)
T ss_dssp CEEEECCHH
T ss_pred eEEEECCCC
Confidence 999887653
No 175
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.85 E-value=0.00028 Score=63.04 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=54.8
Q ss_pred cccEEEEecC-CCCCchhHHHHHHHHHHhcccc---ceeccCCCCC----CCCCceeEEEEeehhHHHHHHHhhccceee
Q 005739 514 HGTLVVLENL-DPSYTSTVVEDLVWHAFKENCS---AKMIPRVAFA----SPYFGQSFVIFKTREVAELVVTKLEEGCLL 585 (680)
Q Consensus 514 ~G~lvllqNL-dps~ts~eVedlv~~a~ke~c~---AkmI~~~~~s----sp~~G~A~vIFkt~eaae~ai~kl~egcl~ 585 (680)
..++|+|.|+ ||.=-..|+++=|+..|..--+ +++ ++...+ .+.-|.|||-|.+.++|..||..|+..-+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I-~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVII-YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEE-EEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEE-eecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-
Confidence 5789999997 3321123566666666654322 222 222221 22348999999999999999999998866
Q ss_pred ecCCceeeeecC
Q 005739 586 LSNGRPLLGSIG 597 (680)
Q Consensus 586 ls~gRpl~~s~~ 597 (680)
+||+|.+++.
T Consensus 97 --~GR~i~v~~~ 106 (118)
T 3ue2_A 97 --AGRKVVAEVY 106 (118)
T ss_dssp --TTEECEEEEE
T ss_pred --CCcEEEEEEc
Confidence 9999999875
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.85 E-value=0.002 Score=62.21 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=60.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
.++.|+|.||++..|..+|.+++-. |-.-..+++++.. .|-|||-|.+.+.|+.||..|+..-| .+||+|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~ 276 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPGR------HDIAFVEFDNEVQAGAARDALQGFKI--TQNNAMK 276 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecCC------CcEEEEEeCCHHHHHHHHHHcCCcEe--CCCCEEE
Confidence 4788999999999999999888753 4444556666322 48999999999999999999998655 3599998
Q ss_pred eecCC
Q 005739 594 GSIGT 598 (680)
Q Consensus 594 ~s~~~ 598 (680)
-+++.
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 87763
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.83 E-value=0.0029 Score=61.18 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=63.9
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccc---cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC---SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c---~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
...+-|++-||.+..|..+++..+++.|..-- ..+++. +..+-|.|||-|.+.+.|+.||..|+.--| +|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g 79 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGFPF---YD 79 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHhcCCee---CC
Confidence 44678999999999999999988888887632 233332 445679999999999999999999987433 89
Q ss_pred ceeeeecCCC
Q 005739 590 RPLLGSIGTP 599 (680)
Q Consensus 590 Rpl~~s~~~~ 599 (680)
|+|.-.++.+
T Consensus 80 ~~l~v~~a~~ 89 (282)
T 3pgw_A 80 KPMRIQYAKT 89 (282)
T ss_pred cEEEEEEecc
Confidence 9999888744
No 178
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.79 E-value=0.00094 Score=56.93 Aligned_cols=81 Identities=9% Similarity=-0.011 Sum_probs=55.9
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhc---cccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeec
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 587 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke---~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls 587 (680)
+...++.|++.||.++-|..++.+++-. |-. --.++++.... --..|-|||-|.+.+.|+.||. ++..-|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~~~~~--- 79 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRD--GKRRGDALIEMESEQDVQKALE-KHRMYM--- 79 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTT--STTCSEEEEEBSSHHHHHHHHT-TTTCCS---
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCC--CCEeeEEEEEECCHHHHHHHHH-hCccee---
Confidence 4467889999999999998887776532 111 12234432221 3456899999999999999999 765332
Q ss_pred CCceeeeecCC
Q 005739 588 NGRPLLGSIGT 598 (680)
Q Consensus 588 ~gRpl~~s~~~ 598 (680)
+||+|.-..+.
T Consensus 80 ~gr~i~V~~a~ 90 (107)
T 2lmi_A 80 GQRYVEVYEIN 90 (107)
T ss_dssp SSSCCCCEECC
T ss_pred CCeEEEEEECC
Confidence 88987655543
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.78 E-value=0.0016 Score=57.25 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=55.1
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC--ce
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP 591 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g--Rp 591 (680)
.++-|++.||.++.|..++.+++-. |-.-...+++. ...+.-..|.|||-|.+.+.|+.|+..|+..-| +| ||
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~~~ 162 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILR-DKLTGRPRGVAFVRYNKREEAQEAISALNNVIP---EGGSQP 162 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCSSC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEE-cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe---cCCCeE
Confidence 3577999999999998887766532 22222334332 222333458899999999999999999998755 55 89
Q ss_pred eeeec
Q 005739 592 LLGSI 596 (680)
Q Consensus 592 l~~s~ 596 (680)
|.-++
T Consensus 163 l~V~~ 167 (168)
T 1b7f_A 163 LSVRL 167 (168)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 87654
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.78 E-value=0.0022 Score=56.62 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=57.4
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++-|++.||+ .|..++.+++-. |-+-..++|+ ..-|-|||-|.+.+.|+.||..|+..-| +||+|
T Consensus 37 ~~~~~lfVgnl~--~te~~L~~~F~~-~G~I~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGED--MTPTLLRGAFSP-FGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQL 103 (121)
T ss_dssp CCCCEEEEECSS--CCHHHHHHHHST-TCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred CCCCEEEEcCCC--CCHHHHHHHHHc-cCCEEEEEEe-------CCCCEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 467888999974 776666665521 2222344553 4668999999999999999999987644 89999
Q ss_pred eeecCCCccC
Q 005739 593 LGSIGTPCFT 602 (680)
Q Consensus 593 ~~s~~~~~~p 602 (680)
..+++.+..+
T Consensus 104 ~V~~a~~~~~ 113 (121)
T 2bz2_A 104 KVNIARKQPM 113 (121)
T ss_dssp EEEECCSSCC
T ss_pred EEEEeCCCCC
Confidence 9999877543
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.77 E-value=0.0026 Score=67.87 Aligned_cols=83 Identities=8% Similarity=0.063 Sum_probs=65.0
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+.|+|.||.+..|..+|.+++-. |-.-..++|+.. ..+.-.-|-|||.|.+.++|+.||..|+..-| +|++|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---~gr~i 174 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRRV 174 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHcCCCEE---CCEEE
Confidence 34578999999999999999888765 544455665532 12333468899999999999999999998755 89999
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
...++.+.
T Consensus 175 ~V~~a~~~ 182 (437)
T 3pgw_S 175 LVDVERGR 182 (437)
T ss_pred EEEEeCCC
Confidence 99988654
No 182
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.73 E-value=0.0034 Score=59.87 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=59.8
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
..|++.||....|..++++|+- .|-+--..+|+.+. .-|+|||-|.+.+.|+.|+..|+...| ..+||+|.-.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k~-----~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEESS-----SCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEEEE
Confidence 4578999999999988887763 44444455665432 357999999999999999999997665 4456999888
Q ss_pred cCCCc
Q 005739 596 IGTPC 600 (680)
Q Consensus 596 ~~~~~ 600 (680)
++.|.
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 88765
No 183
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.71 E-value=0.005 Score=53.40 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=52.8
Q ss_pred cEEEEecC-CCCCch-----hHHHHHHHHHHhccc---cceeccCCC--CCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 516 TLVVLENL-DPSYTS-----TVVEDLVWHAFKENC---SAKMIPRVA--FASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 516 ~lvllqNL-dps~ts-----~eVedlv~~a~ke~c---~AkmI~~~~--~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
++|+|.|+ ||.--. .++++=|+..|..-- .++ |++.. ...+..|.|||-|.+.++|+.||..||..-+
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~-i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE-IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEE-CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEE-EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 68889997 443221 124444555554321 222 33332 2235679999999999999999999998765
Q ss_pred eecCCceeeeecCC
Q 005739 585 LLSNGRPLLGSIGT 598 (680)
Q Consensus 585 ~ls~gRpl~~s~~~ 598 (680)
+||+|.+++..
T Consensus 85 ---~GR~i~v~~~~ 95 (105)
T 3v4m_A 85 ---ANRVVVTKYCD 95 (105)
T ss_dssp ---TTEECEEEEEC
T ss_pred ---CCCEEEEEEeC
Confidence 99999998753
No 184
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.70 E-value=0.0013 Score=60.05 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=57.1
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhc---cccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke---~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
..++.|++.||.++.|..+|.+++-. |-. --.++++-... --..|-|||-|.+.+.|+.||. |+..-| +|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~--g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~g 114 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE--GRQSGEAFVELGSEDDVKMALK-KDRESM---GH 114 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS--SCEEEEEEEECSSHHHHHHHHT-TTEEES---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCCCEE---CC
Confidence 46789999999999999888776644 222 12344443221 3346789999999999999999 876544 89
Q ss_pred ceeeeecCC
Q 005739 590 RPLLGSIGT 598 (680)
Q Consensus 590 Rpl~~s~~~ 598 (680)
|+|.-..+.
T Consensus 115 r~i~V~~a~ 123 (136)
T 2hgl_A 115 RYIEVFKSH 123 (136)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEECC
Confidence 998776653
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.64 E-value=0.0026 Score=51.85 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=57.6
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.+..|..++.+++- .|-.-..++|+.. +-|-|||-|.+.++|+.| +..- +.-+|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~----~~~~-~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP------FRAFAFVTFADDQIAQSL----CGED-LIIKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS------CCSCCEEECSCHHHHHHT----TTCE-EEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC------CCCEEEEEECCHHHHHHH----hcCC-ceeCCEEE
Confidence 3457789999999999988777653 2333344555532 679999999999999864 3332 34489999
Q ss_pred eeecCCCccCCC
Q 005739 593 LGSIGTPCFTGK 604 (680)
Q Consensus 593 ~~s~~~~~~p~k 604 (680)
.-+.+.|.....
T Consensus 71 ~v~~a~~~~~~~ 82 (88)
T 1wf0_A 71 HISNAEPKHNSN 82 (88)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEecCCCCCCC
Confidence 999998876544
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.64 E-value=0.0041 Score=59.29 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=54.6
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhcc--ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN--CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~--c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
-++.+++.||+++.|..++.+|+.. |-.- +.+++++.. .. ..|-|||-|.+.+.|..||..|+.-=|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~~~~--~~-~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVFSGK--SE-RSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEECSCC--SS-SSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEEcCC--CC-CceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 3678999999999999999998865 5554 778888764 22 349999999999999999999986655
No 187
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.58 E-value=0.0014 Score=56.09 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=56.2
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
..++.|++.||.++.|..||.+++-. |- -..++|+-.. +--.-|-|||-|.+.+.|+.|| +++. .. -+||+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G-~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al-~~~~-~~--~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP-LN-PMRVHIEIGP--DGRVTGEADVEFATHEDAVAAM-AKDK-AN--MQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS-CC-CSEEEEEESS--SSCEEEEEEEECSSSHHHHHHH-TTSS-CC--SSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cC-ceEEEEEECC--CCCEeeEEEEEECCHHHHHHHH-HhCC-Ce--ECCcEE
Confidence 45678999999999998888776643 22 1245554332 2334578999999999999999 5654 33 289998
Q ss_pred eeecCCCc
Q 005739 593 LGSIGTPC 600 (680)
Q Consensus 593 ~~s~~~~~ 600 (680)
.-....+.
T Consensus 85 ~V~~~~~~ 92 (102)
T 1wez_A 85 ELFLNSTA 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 77665544
No 188
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.57 E-value=0.001 Score=55.51 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=57.7
Q ss_pred hhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 511 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 511 a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
+....+-|++.||.+..|..++.+++- .|-.-...+|+... +.-.-|-|||-|.+.++|+.||. .|.. | +||
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~---~~~~-~-~g~ 76 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE---SQIN-F-HGK 76 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT---CCCE-E-TTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHh---CCCe-E-CCE
Confidence 344567899999999999998877663 23333355665543 44456899999999999999998 3433 2 788
Q ss_pred eeeeecCCC
Q 005739 591 PLLGSIGTP 599 (680)
Q Consensus 591 pl~~s~~~~ 599 (680)
+|.-..+.+
T Consensus 77 ~l~v~~a~~ 85 (102)
T 2xs2_A 77 KLKLGPAIR 85 (102)
T ss_dssp ECEEEEEEE
T ss_pred EEEEEECCc
Confidence 887555543
No 189
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.56 E-value=0.0019 Score=56.31 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=54.9
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhc---cccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke---~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
...++.|++.||.+.-|..+|.+++-. |.. -...+|+.... --.-|-|||-|.+.+.|+.||. |+. .. -+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~g-~~--~~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE--GRQSGEAFVELESEDDVKLALK-KDR-ES--MG 86 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS--SCEEEEEEEEBSSHHHHHHHGG-GTT-EE--ET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCC-Ce--EC
Confidence 356788999999999999887776543 111 12345543222 2335789999999999999999 765 33 28
Q ss_pred Cceeeeec
Q 005739 589 GRPLLGSI 596 (680)
Q Consensus 589 gRpl~~s~ 596 (680)
||+|.-..
T Consensus 87 gr~i~V~~ 94 (118)
T 2db1_A 87 HRYIEVFK 94 (118)
T ss_dssp TEEEEEEE
T ss_pred CeEEEEEE
Confidence 99986644
No 190
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0025 Score=54.83 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=53.8
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCC---CCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA---SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~s---sp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
..+-|++.||.+..|..++.+++-. |-+ +..+++... -+ -.+-|-|||-|.+.++|+.||..|++ -||+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~-i~~~~~~~~-~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~-----~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGP-LVVDWPHKA-ESKSYFPPKGYAFLLFQEESSVQALIDACLE-----EDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCC-CCEECTTSS-SSCCCSCTTSEEEECCSSHHHHHHHHHHSEE-----ETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCC-EEEEEeecC-CCCCCCCcccEEEEEECCHHHHHHHHHhhhh-----cCCc
Confidence 3456889999999999888766532 221 123333222 12 24578999999999999999999864 2888
Q ss_pred eeeeecCC
Q 005739 591 PLLGSIGT 598 (680)
Q Consensus 591 pl~~s~~~ 598 (680)
.|++....
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 88876543
No 191
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.56 E-value=0.0043 Score=56.13 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=54.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCc-eeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G-~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
|++.||...-|..++.+|+- .|-+--.++|+.+ .| +|||-|.+.+.|+.||..|+..-| ...+|+|.-.+
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i-~g~~~~l~V~~ 98 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADI-YAGCCTLKIEY 98 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCC-BTTBSEEEEEC
T ss_pred EEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCeEEEEEE
Confidence 56899999888776555543 2333445667654 28 799999999999999999997666 22237888888
Q ss_pred CCCc
Q 005739 597 GTPC 600 (680)
Q Consensus 597 ~~~~ 600 (680)
+.|.
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 7654
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.51 E-value=0.0056 Score=55.25 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=70.7
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
.+..+-|++-||.+..|..+|.+++-. |-+-...+++... .+-.+.|-|||-|.+.+.|+.||.. +.. . -+||+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~--~~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDP-NTKRSRGFGFVTYATVEEVDAAMNA-RPH-K--VDGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHT-CSC-E--ETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcC-CCCCccceEEEEeCCHHHHHHHHhc-CCC-E--ECCEE
Confidence 356788999999999999988877643 3333345555321 2233467999999999999999976 332 2 38999
Q ss_pred eeeecCCCccCC--------CCCceeeeeeehhHHHHHHHHHHhhhc
Q 005739 592 LLGSIGTPCFTG--------KQSKFVGHLALDKLKFQMQREMREAVS 630 (680)
Q Consensus 592 l~~s~~~~~~p~--------k~~~f~GH~~i~k~~~~~qremr~avs 630 (680)
|....+.+..+. ....|+|.|.-+=. ..++++..+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t----~~~l~~~F~ 126 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE----EHHLRDYFE 126 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCC----HHHHHHHHT
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCC----HHHHHHHHh
Confidence 988777554322 14567887755422 344555443
No 193
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.51 E-value=0.0023 Score=57.89 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=53.4
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccc--cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC--SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 590 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c--~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR 590 (680)
+..+.|++-||.++-|..+|.+++-.. .-. .++|+-... --..|-|||-|.+.+.|+.||.+.+ .. -+||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~--GrsrGfaFV~F~~~e~A~~Al~~~~--~~--l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPE--GKITGEAFVQFASQELAEKALGKHK--ER--IGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSS--SSSCSEEEEEESSTTHHHHHHTTTT--CC--BTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHCC--CE--ECCE
Confidence 345789999999999999888776542 222 344432221 2236899999999999999998643 22 2899
Q ss_pred eeeeecC
Q 005739 591 PLLGSIG 597 (680)
Q Consensus 591 pl~~s~~ 597 (680)
+|.-...
T Consensus 112 ~I~V~~a 118 (126)
T 2hgm_A 112 YIEVFKS 118 (126)
T ss_dssp CCCCEEE
T ss_pred EEEEEEC
Confidence 9865443
No 194
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.0026 Score=53.88 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=54.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhcccc----ceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS----AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~----AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
..++.|++.||.++-|..++.+++ ..-.. .+|+. . .+.-..|-|||-|.+.+.|+.||.+ + |.. -+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F----~~~G~v~~~v~i~~-~-~~g~~~G~afV~F~~~~~a~~A~~~-~-~~~--~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFF----SGLEIVPNGMTLPV-D-FQGRSTGEAFVQFASQEIAEKALKK-H-KER--IG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHT----TTCCEEEEEEECCB-C-SSSCBCSEEEEEESSHHHHHHHHTT-T-TCC--SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH----HhcCCcceeEEEEE-C-CCCCcceEEEEEECCHHHHHHHHHh-C-cch--hC
Confidence 456789999999999987776654 43322 23332 2 3445578999999999999999998 5 544 28
Q ss_pred CceeeeecCCC
Q 005739 589 GRPLLGSIGTP 599 (680)
Q Consensus 589 gRpl~~s~~~~ 599 (680)
||+|.-....+
T Consensus 83 gr~i~v~~~~~ 93 (104)
T 1wg5_A 83 HRYIEIFKSSR 93 (104)
T ss_dssp SSCCEEEEECT
T ss_pred CcEEEEEECCH
Confidence 99887655543
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.50 E-value=0.0039 Score=54.88 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=66.5
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 593 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~ 593 (680)
..+-|++.||.++.|..++.+++-. |-.-...+++. ...+.-+.|-|||-|.+.+.|+.|+... . .-+||+|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~~----~-~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMK-DPATGRSRGFGFLSFEKPSSVDEVVKTQ----H-ILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCC-CTTTSSCCSCEEEEESSTHHHHHHHHSC----C-EETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEE-CCCCCCccceEEEEEccHHHHHHHHhcc----c-ccCCeEcc
Confidence 4677899999999999988777632 22223344432 2233445689999999999999999852 2 34899998
Q ss_pred eecCCCccCC--CCCceeeeeeehh
Q 005739 594 GSIGTPCFTG--KQSKFVGHLALDK 616 (680)
Q Consensus 594 ~s~~~~~~p~--k~~~f~GH~~i~k 616 (680)
.....|..+. ....|+|.|.-+-
T Consensus 75 v~~~~~~~~~~~~~~l~V~nlp~~~ 99 (167)
T 2cjk_A 75 PKRAIPRDEQDKTGKIFVGGIGPDV 99 (167)
T ss_dssp CEECCCHHHHHHCEEEEEEEECTTC
T ss_pred cccccchhhccCCCeEEECCCCCCC
Confidence 8877654332 2457888876543
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.46 E-value=0.0066 Score=52.47 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=32.4
Q ss_pred CCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 558 YFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 558 ~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
.-|.|||-|.+.+.|+.||..|+..-+ +||+|...+
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~---~Gr~i~v~~ 102 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWF---NGQPIHAEL 102 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECCEEE
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEE---CCEEEEEEE
Confidence 469999999999999999999998866 899998765
No 197
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.46 E-value=0.0041 Score=56.17 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=57.7
Q ss_pred ccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCcee
Q 005739 513 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 592 (680)
Q Consensus 513 e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl 592 (680)
...+-|++.||.++.|..+|.+++- .|-.-..++++... -+.-..|-|||-|.+.+.|+.|+.. + |-. -+||+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~-~-~~~--~~G~~i 175 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDR-GSGKKRGFAFVTFDDHDSVDKIVIQ-K-YHT--VNGHNC 175 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHC-S-CCE--ETTEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecC-CCCCccceEEEEECCHHHHHHHHHh-C-CcE--ECCEEE
Confidence 3447899999999999888887764 23333345554321 1223467899999999999999987 4 432 389999
Q ss_pred eeecCCCccCCCC
Q 005739 593 LGSIGTPCFTGKQ 605 (680)
Q Consensus 593 ~~s~~~~~~p~k~ 605 (680)
.-+++.|...-++
T Consensus 176 ~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 176 EVRKALSKQEMAS 188 (196)
T ss_dssp EEEECC-------
T ss_pred EEEecCChhHhcc
Confidence 9999987665443
No 198
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.39 E-value=0.003 Score=59.46 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s 595 (680)
+-|++-||+++.|..++.+++.. |-+-..++++. -..+.-+.|-|||-|.+.+.|+.||..|+.-.+ +||+|...
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~-d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~i~~~ 90 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCR-DMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVRIM 90 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEec-ccCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCcccccc
Confidence 55889999999998888877633 23333556553 223344568899999999999999999987655 89998777
Q ss_pred cCCCcc----CCCCCceeeeeeeh
Q 005739 596 IGTPCF----TGKQSKFVGHLALD 615 (680)
Q Consensus 596 ~~~~~~----p~k~~~f~GH~~i~ 615 (680)
...+.. ++....|+|+|.-+
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~ 114 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKS 114 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTT
T ss_pred cccccccccccccccceECCcccc
Confidence 664433 23345788877644
No 199
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.0075 Score=49.80 Aligned_cols=74 Identities=12% Similarity=0.040 Sum_probs=53.6
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCc-eeEEEEeehhHHHHHHHhhccceeeecCCceeee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 594 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G-~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~ 594 (680)
+-|++.||++..|..++.+++-. --.-.-| ...+..| -|||-|.+.++|+.||. |+.-.| +||+|.-
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~----~G~v~~v----~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~---~g~~l~V 76 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLA----FGPVASV----VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSL---GGHRLRV 76 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGG----TSCEEEE----EECSSSCCEEEEEESSHHHHHHHHT-CSCCEE---TTEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHh----cCCeEEE----EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEE---CCEEEEE
Confidence 46789999999999888766532 1111111 2233344 69999999999999999 987655 8999998
Q ss_pred ecCCCcc
Q 005739 595 SIGTPCF 601 (680)
Q Consensus 595 s~~~~~~ 601 (680)
..+.+..
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 8776543
No 200
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.33 E-value=0.0076 Score=53.02 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=61.1
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhcc--ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccc-eeeecCCc
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN--CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG-CLLLSNGR 590 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke~--c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~eg-cl~ls~gR 590 (680)
..+-|++-||++..|..++.+++.. |-.- +..+++-. ..+--.-|-|||-|.+. .|+.||..|+.. ..+.-+||
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d-~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKD-KQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBC-SSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEc-CCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 3567899999999998888877642 2222 22455432 22334468899999999 999999999986 11123899
Q ss_pred eeeeecCCCccC
Q 005739 591 PLLGSIGTPCFT 602 (680)
Q Consensus 591 pl~~s~~~~~~p 602 (680)
+|.-.++.|.-+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999998877543
No 201
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.29 E-value=0.0026 Score=58.30 Aligned_cols=84 Identities=14% Similarity=0.071 Sum_probs=57.4
Q ss_pred hhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 510 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
.+.+.++.|++.||.++.|..||.+++-. |- -..++++-... --.-|-|||-|.+.+.|+.|| +++.--| +|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~~v~i~~d~~--g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~g 112 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSP-LN-PVRVHIEIGPD--GRVTGEADVEFATHEEAVAAM-SKDRANM---QH 112 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCS-CC-CSEEECCCSSS--SCSSCCCEEECSHHHHHHHHT-TCCSCSS---SS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEECCC--CCCceEEEEEeCCHHHHHHHH-hhCCCEE---CC
Confidence 34567888999999999998887776643 22 22444443221 234678999999999999999 7765333 89
Q ss_pred ceeeeecCCCcc
Q 005739 590 RPLLGSIGTPCF 601 (680)
Q Consensus 590 Rpl~~s~~~~~~ 601 (680)
|+|.-....+..
T Consensus 113 R~i~V~~a~~~~ 124 (139)
T 2hgn_A 113 RYIELFLNSTTG 124 (139)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 998777766543
No 202
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.25 E-value=0.00071 Score=58.03 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=60.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHh-cccc------ceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeee
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCS------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 586 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~k-e~c~------AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~l 586 (680)
..+-|++.||.+..|..++.+++-..=. ..|. .+++. ...+.-.-|-|||-|.+.++|+.||..|+..-|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT-DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 82 (116)
Confidence 4567889999999999998877754211 1111 23321 112233467899999999999999999997544
Q ss_pred cCCceeeeecCCCccCC
Q 005739 587 SNGRPLLGSIGTPCFTG 603 (680)
Q Consensus 587 s~gRpl~~s~~~~~~p~ 603 (680)
+||+|.-.++.|....
T Consensus 83 -~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 -SGNPIKVSFATRRADF 98 (116)
Confidence 7999999998776543
No 203
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.14 E-value=0.0089 Score=53.67 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=61.2
Q ss_pred cccEEEE--ecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee--eecCC
Q 005739 514 HGTLVVL--ENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL--LLSNG 589 (680)
Q Consensus 514 ~G~lvll--qNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl--~ls~g 589 (680)
-.+.+++ -||....|..++++++- -|-+--.+.|++ .-|=|||-|.+.+.|+.||..|+..=| ++..|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~-------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCT-------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 3567888 55999999999888774 344433445542 358899999999999999999998622 24579
Q ss_pred ceeeeecCCCccCCC
Q 005739 590 RPLLGSIGTPCFTGK 604 (680)
Q Consensus 590 Rpl~~s~~~~~~p~k 604 (680)
|||+-.+....+--+
T Consensus 96 ~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSG 110 (114)
T ss_dssp EECEEEEESCCCCSS
T ss_pred cEEEEEecccCcccC
Confidence 999999886544333
No 204
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.06 E-value=0.01 Score=51.74 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=53.6
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCc--ee
Q 005739 515 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR--PL 592 (680)
Q Consensus 515 G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gR--pl 592 (680)
++-|++.||.++.|..++.+++.. |-.-...+++.. ..+...-|-|||-|.+.+.|+.|+..|+..-| +|| ||
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~~~i 162 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP---SGATEPI 162 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCSSCC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHhcCCcc---CCCccce
Confidence 456899999999998887776642 333344555432 22233467899999999999999999998755 665 45
Q ss_pred eee
Q 005739 593 LGS 595 (680)
Q Consensus 593 ~~s 595 (680)
.-+
T Consensus 163 ~v~ 165 (167)
T 1fxl_A 163 TVK 165 (167)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 205
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.01 E-value=0.014 Score=48.55 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=55.4
Q ss_pred HhhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecC
Q 005739 509 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 509 ~~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~ 588 (680)
..+...++-|++-||.+..|..++.+++-. |-.-..++++.. .-|-|||-|.+.++|+. |+.. -+.-+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~~~~-~~~~~ 72 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP------FRAFAFVTFADDKVAQS----LCGE-DLIIK 72 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS------CCSEEEEEESCHHHHHH----HTTC-EEEET
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC------CCCEEEEEECCHHHHHH----HcCC-CcccC
Confidence 356677889999999999999988877643 444445666543 56999999999999983 4444 33458
Q ss_pred CceeeeecCCCc
Q 005739 589 GRPLLGSIGTPC 600 (680)
Q Consensus 589 gRpl~~s~~~~~ 600 (680)
||+|.-+.+.|.
T Consensus 73 g~~v~v~~a~~k 84 (89)
T 3d2w_A 73 GISVHISNAEPK 84 (89)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEEEcCCC
Confidence 999999988764
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.97 E-value=0.02 Score=50.78 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=63.4
Q ss_pred ccEEEEecC-CCCC-c----hhHHHHHHHHHHhcccc---ceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceee
Q 005739 515 GTLVVLENL-DPSY-T----STVVEDLVWHAFKENCS---AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 585 (680)
Q Consensus 515 G~lvllqNL-dps~-t----s~eVedlv~~a~ke~c~---AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ 585 (680)
-++|+|.|+ +|.= . -.|+++=|+..|..--. .++ ++. +.-|.|||-|.+.+.|+.||..|+..-+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 468888886 3432 1 23444555555543221 222 222 1379999999999999999999998866
Q ss_pred ecCCceeeeecCCCccCCCCCceeeeeeehhHHHHHHHHHHhhhcccCCCCCCc
Q 005739 586 LSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNS 639 (680)
Q Consensus 586 ls~gRpl~~s~~~~~~p~k~~~f~GH~~i~k~~~~~qremr~avsTSHcSQPN~ 639 (680)
+||+|..++..+. + -++---+|.+.+-|=||+|
T Consensus 81 --~GR~i~v~~~~~~-----------------~--y~~~fp~a~~~~~~l~p~~ 113 (114)
T 3s6e_A 81 --AGKMITAAYVPLP-----------------T--YHNLFPDSMTATQLLVPSR 113 (114)
T ss_dssp --TTEECEEEEECHH-----------------H--HHHHCGGGSSCCSCCCCSC
T ss_pred --CCEEEEEEEEcHH-----------------H--HHHhCccccccCccCCCCC
Confidence 9999999874221 1 1123456777777777775
No 207
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.93 E-value=0.007 Score=60.61 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=61.1
Q ss_pred ccccEEEEecCCCCCc-----hhHHHHHHHHHHhcc---ccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 513 EHGTLVVLENLDPSYT-----STVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 513 e~G~lvllqNLdps~t-----s~eVedlv~~a~ke~---c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
...+-+++-||++..+ ....|+.++..|.+- -..++++ .-|-|||-|.++++|+.|+..|+..-|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567889999998762 233466666666654 4456663 469999999999999999999999887
Q ss_pred eec---------CCceeeeecCCCc
Q 005739 585 LLS---------NGRPLLGSIGTPC 600 (680)
Q Consensus 585 ~ls---------~gRpl~~s~~~~~ 600 (680)
+++ +||+|.-..+.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 653 7999999998653
No 208
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.89 E-value=0.0076 Score=54.01 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=53.5
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccc-------cceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-------SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c-------~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
.+.++.|++-||..+-|..+|.+++ .+-| .++|+... +--..|-|||-|.+.+.|+.||.+ +...|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F----~~~g~v~g~v~~v~i~~d~--~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFF----GQHCPITGGKEGILFVTYP--DGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHH----HTTSCCTTGGGGEEEEECT--TSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH----HhhCCccCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4567899999999999988877765 4444 34555431 222368999999999999999987 54333
Q ss_pred eecCCceeeee
Q 005739 585 LLSNGRPLLGS 595 (680)
Q Consensus 585 ~ls~gRpl~~s 595 (680)
+||+|.-.
T Consensus 93 ---~gR~i~V~ 100 (123)
T 2dha_A 93 ---GKRYIELF 100 (123)
T ss_dssp ---SSCEECCE
T ss_pred ---CCeEEEEE
Confidence 78876443
No 209
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.55 E-value=0.015 Score=55.08 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=57.3
Q ss_pred hccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCce
Q 005739 512 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 591 (680)
Q Consensus 512 ~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRp 591 (680)
....+-|++.||.+..|..++++++-. |-.-...+|+... +--+-|-|||-|.+.++|+.||..++. . -+||+
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~--~~~~kG~aFVeF~~~e~A~~A~~~~~~---~-~~Gr~ 178 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPGQ---K-YKETD 178 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEECT--TCCEEEEEEEEESSHHHHHHHHHCTTC---E-ETTEE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHhCCC---e-ECCEE
Confidence 345678999999999998887776532 3333345555422 233468999999999999999987652 2 49999
Q ss_pred eeeecCC
Q 005739 592 LLGSIGT 598 (680)
Q Consensus 592 l~~s~~~ 598 (680)
|.-....
T Consensus 179 l~V~~~~ 185 (193)
T 2voo_A 179 LLILFKD 185 (193)
T ss_dssp CEEEETT
T ss_pred EEEEEhH
Confidence 9876654
No 210
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.25 E-value=0.017 Score=52.65 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=52.2
Q ss_pred hhccccEEEEecCCCC-CchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEee-hhHHHHHHHhhccceeeecC
Q 005739 511 AHEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-REVAELVVTKLEEGCLLLSN 588 (680)
Q Consensus 511 a~e~G~lvllqNLdps-~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt-~eaae~ai~kl~egcl~ls~ 588 (680)
++..|.||++.||.+. -|-.+ |..+|++--+-+.|.-.. .. -.|||-|.+ -++|+.||.+|++|-|.+.+
T Consensus 14 ~~~~G~il~v~~l~~~~~sred----Lke~F~~~G~V~~Vd~~~-g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCRED----LHILFSNHGEIKWIDFVR-GA---KEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHH----HHHHTCSSCCEEEEECCT-TC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccCCeEEEEecCCCCcCCHHH----HHHHHHhcCCEEEEEEec-CC---CEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 4578999999999999 66444 456677655555443211 11 149999999 68999999999999998865
Q ss_pred C
Q 005739 589 G 589 (680)
Q Consensus 589 g 589 (680)
-
T Consensus 86 ~ 86 (121)
T 1owx_A 86 K 86 (121)
T ss_dssp S
T ss_pred c
Confidence 3
No 211
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.11 E-value=0.027 Score=51.64 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=57.3
Q ss_pred hhhccccEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCC
Q 005739 510 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 589 (680)
Q Consensus 510 ~a~e~G~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~g 589 (680)
.+--.=..|++.||...-|..++.+|+- .|-+-..++|+.+. .-+||||-|.+.+.|+.||..||..-| ..++
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i-~g~~ 95 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNI-YNAC 95 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEE-ETTE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCee-cCCC
Confidence 3333445677999998888887666532 23344456676542 234799999999999999999997766 2234
Q ss_pred ceeeeecCCCc
Q 005739 590 RPLLGSIGTPC 600 (680)
Q Consensus 590 Rpl~~s~~~~~ 600 (680)
++|--.++.|.
T Consensus 96 ~~LrI~~ak~~ 106 (130)
T 3zzy_A 96 CTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecCCC
Confidence 77777776553
No 212
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.091 Score=45.62 Aligned_cols=69 Identities=22% Similarity=0.121 Sum_probs=50.5
Q ss_pred CCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeecCCCccCCC
Q 005739 525 PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGK 604 (680)
Q Consensus 525 ps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~~~~~~p~k 604 (680)
|.+|..++++++- -|-+-..++|+. -.-|-|||-|.+.+.|+.||..++. -.||||.-+++.+..+.+
T Consensus 27 ~~~te~~L~~~F~-~~G~V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~~~~-----~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEVLNLVLSS------KKPGTAVVEFATVKAAELAVQNEVG-----LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCEEEEEEES------SSSSEEEEEESCHHHHHHHHHTCCB-----CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEcc------CCCCEEEEEECCHHHHHHHHHhcCC-----CCCCeEEEEEccCCCCCC
Confidence 5677777766653 244445566662 3469999999999999999998544 269999999998776554
Q ss_pred C
Q 005739 605 Q 605 (680)
Q Consensus 605 ~ 605 (680)
.
T Consensus 95 ~ 95 (100)
T 2d9o_A 95 S 95 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 213
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.32 E-value=0.067 Score=50.54 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=53.6
Q ss_pred cccEEEEecC-CCCCchhHHHHHHHHHHhcccc---ceeccCCCC---CCCCCceeEEEEeehhHHHHHHHhhccceeee
Q 005739 514 HGTLVVLENL-DPSYTSTVVEDLVWHAFKENCS---AKMIPRVAF---ASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 586 (680)
Q Consensus 514 ~G~lvllqNL-dps~ts~eVedlv~~a~ke~c~---AkmI~~~~~---ssp~~G~A~vIFkt~eaae~ai~kl~egcl~l 586 (680)
..+++.|.|+ +|.-...+.++-++..|.+-=+ ++++....- +-..-|.+||-|.+-++|..||..|+..-+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~-- 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--
Confidence 4566666665 4444444555556666654322 333311111 114558999999999999999999999966
Q ss_pred cCCceeeeecC
Q 005739 587 SNGRPLLGSIG 597 (680)
Q Consensus 587 s~gRpl~~s~~ 597 (680)
+||+|.+++-
T Consensus 201 -~gr~i~~~~~ 210 (222)
T 3dxb_A 201 -AGRKVVAEVY 210 (222)
T ss_dssp -SSSBCEEEEC
T ss_pred -CCeEEEEEEc
Confidence 9999999874
No 214
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=90.83 E-value=0.24 Score=51.97 Aligned_cols=82 Identities=15% Similarity=0.042 Sum_probs=56.7
Q ss_pred HHhhhccccEEEEecCCCCC--chhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceee
Q 005739 508 IRVAHEHGTLVVLENLDPSY--TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 585 (680)
Q Consensus 508 ~~~a~e~G~lvllqNLdps~--ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ 585 (680)
++...+-.+-+++-||.++| |..++++++-. |-+--..+|.+ .-|=|||-|.+.+.|+.||..||..=++
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT-------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34444556778999976554 55555444332 22323344432 4589999999999999999999988776
Q ss_pred ecCCc--eeeeecC
Q 005739 586 LSNGR--PLLGSIG 597 (680)
Q Consensus 586 ls~gR--pl~~s~~ 597 (680)
-..|| ||+-++.
T Consensus 83 ~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 83 DDLGQKITLYLNFV 96 (345)
T ss_dssp CTTSCEEECEEEEC
T ss_pred cccCCceEEEEEEe
Confidence 66677 8887776
No 215
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.76 E-value=1.1 Score=39.28 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHHHhc---cccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeecCCCccC
Q 005739 527 YTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFT 602 (680)
Q Consensus 527 ~ts~eVedlv~~a~ke---~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~~~~~~p 602 (680)
+-..++-+-+.++|.+ -..+|+|. +++||.|...++|..||. ||-..| +||.|-=...+|--+
T Consensus 23 ~fd~~l~~~L~~~F~~~G~Vi~vr~~~---------d~~fVtF~d~~sAlaAi~-mnG~~v---~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 23 FFDDALIDELLQQFASFGEVILIRFVE---------DKMWVTFLEGSSALNVLS-LNGKEL---LNRTITIALKSPSGP 88 (91)
T ss_dssp SCCHHHHHHHHHHHHTTCCEEEEEECS---------SSEEEEESSHHHHHHGGG-GTTCEE---TTEEEEEEECCCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCeEEEEEec---------CCEEEEECChHHHHHHHh-cCCeEe---CCeEEEEEeCCCCcc
Confidence 3343333334455544 45567765 569999999999999998 999987 999998888877554
No 216
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.05 E-value=5 Score=35.61 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=36.0
Q ss_pred HhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 540 FKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 540 ~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
|-+-..+|+|.-. +||.|...++|..||. ||-..+ +||.|-=+.
T Consensus 48 ~G~Vilvr~v~d~---------~fVtF~d~~sAl~AI~-ldG~~v---~Gr~L~V~~ 91 (95)
T 1ufw_A 48 YGTIVLVRINQGQ---------MLVTFADSHSALSVLD-VDGMKV---KGRAVKISG 91 (95)
T ss_dssp HSCCSEEEEETTE---------EEEECSCSHHHHHHHH-GGGSEE---TTEEEEEEC
T ss_pred CCCEEEEEEecCc---------EEEEEcChHHHHHHHh-cCCeee---CCeEEEEec
Confidence 4456667777654 9999999999999998 999998 999986443
No 217
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=79.41 E-value=2.4 Score=39.81 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=52.0
Q ss_pred cEEEEecC----CCCCchhHHHHHHHHHHhccccceeccCCCCCCCCC----ceeEEEEee-----hhH---HHHHHH--
Q 005739 516 TLVVLENL----DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYF----GQSFVIFKT-----REV---AELVVT-- 577 (680)
Q Consensus 516 ~lvllqNL----dps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~----G~A~vIFkt-----~ea---ae~ai~-- 577 (680)
+=+++-|| +|+-|..+|.+++- .|-+--.+++|. +|.+ |=+||-|.. -+| |..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~-----Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFN-----DPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEE-----CTTTCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEe-----cCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45789999 99999999888887 576655555553 4444 568999984 343 888988
Q ss_pred hhccceeeecCCceeeee
Q 005739 578 KLEEGCLLLSNGRPLLGS 595 (680)
Q Consensus 578 kl~egcl~ls~gRpl~~s 595 (680)
+|+.-+| +||+|-..
T Consensus 77 ~lng~~I---~Gr~irV~ 91 (136)
T 2j8a_A 77 ESSGCFI---MGFKFEVI 91 (136)
T ss_dssp TTTCEEE---TTEEEEEE
T ss_pred hhcCCee---cCcEEEEE
Confidence 6666555 89998776
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=55.26 E-value=7.9 Score=34.21 Aligned_cols=56 Identities=16% Similarity=0.031 Sum_probs=36.2
Q ss_pred CCceeEEEEeehhHHHHHHHhhccceeeecCCceeeee--------------cCCCccCCCCCceeeeeeeh
Q 005739 558 YFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS--------------IGTPCFTGKQSKFVGHLALD 615 (680)
Q Consensus 558 ~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s--------------~~~~~~p~k~~~f~GH~~i~ 615 (680)
..|.|||-|.+.+.|+.|+..++..-. .+|...+.. ......+.....|+|+|.-+
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNG--VDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHT--CCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCC--CCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 579999999999999999998875321 223222111 11222344567899988765
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=54.19 E-value=17 Score=31.61 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=44.8
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh----ccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFK----ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~k----e~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
|+|-+|-|+.|-.|.+++|-...+ .=|-+++= .-.+-..+||+.|++.|.+..-..+++.--+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s----~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTS----LYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCS----STTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 789999999999999988754321 11233321 1346678999999999988888888764433
No 220
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.67 E-value=44 Score=30.16 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHhc---cccc--eeccCCCCCCCCCceeEEEEeehhHHHHHHHh
Q 005739 514 HGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSA--KMIPRVAFASPYFGQSFVIFKTREVAELVVTK 578 (680)
Q Consensus 514 ~G~lvllqNLdps~ts~eVedlv~~a~ke---~c~A--kmI~~~~~ssp~~G~A~vIFkt~eaae~ai~k 578 (680)
-|.-|.++||.|.-. +|++.-=|.- +.-. ..+++. | +.|+|.|.-.++|++++.+
T Consensus 7 ~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~~----~--~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQRL----G--CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEEE----T--TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEEc----C--CcEEEEEcChHHHHHHhcC
Confidence 467899999999765 3355555544 2322 223332 2 8899999999999999999
No 221
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=41.62 E-value=8.4 Score=34.62 Aligned_cols=75 Identities=27% Similarity=0.308 Sum_probs=51.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeecC
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG 597 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~~ 597 (680)
|+|-| |+--|=+-|-+++-..| .|+..--..-...-=+.|+|.|.=.++|.||.-+.+|..-= =.+|-||.+++-
T Consensus 30 ViL~N-Dd~ttmefVv~vL~~~f--~~~~~~A~~iml~VH~~G~avv~~~~~e~AE~k~~~l~~~a--r~~~~pL~~t~E 104 (108)
T 2w9r_A 30 VILVN-DDYTPMEFVIDVLQKFF--SYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYA--RENEHPLLCTLE 104 (108)
T ss_dssp EEEEC-CSSSBHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH--HHTTCCCEEEEE
T ss_pred EEEEc-CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHHHHH--HhCCCCcEEEEE
Confidence 55555 55556566777777777 55544333333444578999999999999999999987421 136789988764
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=40.91 E-value=14 Score=32.52 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=39.1
Q ss_pred CCCceeEEEEeehhHHHHHHHhh-ccceeeecCCceeeeecCCC------------------ccCCCCCceeeeeeeh
Q 005739 557 PYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRPLLGSIGTP------------------CFTGKQSKFVGHLALD 615 (680)
Q Consensus 557 p~~G~A~vIFkt~eaae~ai~kl-~egcl~ls~gRpl~~s~~~~------------------~~p~k~~~f~GH~~i~ 615 (680)
...|++++-|-+.++|+.|+..+ +..-| +| |+....+.+ ..+.....|+|+|.-+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 45789988899999999999999 55433 55 665555432 2334466899988654
No 223
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=35.73 E-value=40 Score=30.30 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccce
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC 583 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egc 583 (680)
.+++| ++-|.+--.|++.|+. .|. ...-+-|.- --|||+|.++++|..|++-|...|
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs-~fg-gv~I~WidD--------TsAlvvf~~~~~a~~al~~i~k~~ 73 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFS-AFG-NIQISWIDD--------TSAFVSLSQPEQVQIAVNTSKYAE 73 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHT-TTC-SCCCEEEET--------TEEEEECSCHHHHHHHHHHHHHCC
T ss_pred eEEEE-eCChhhhhHHHHHHhh-ccC-CEEEEEEcC--------CeEEEEecCHHHHHHHHHhcccCC
Confidence 36667 9999999999999874 344 556666653 369999999999999999885444
No 224
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=30.03 E-value=26 Score=31.11 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=42.8
Q ss_pred EEEEecCCCCCchhHHHHHHHHHH----hccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 517 LVVLENLDPSYTSTVVEDLVWHAF----KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 517 lvllqNLdps~ts~eVedlv~~a~----ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
=|+|-+|-|+.|-.|.++.|-... -.-|-++. +.-.+-+.+||+.|++-|....-..+.+.--+
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~----s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADL----SLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCS----SSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCcc----CCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 378999999999999887773211 11233331 11345567999999999888777777654433
No 225
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=29.94 E-value=17 Score=31.20 Aligned_cols=74 Identities=27% Similarity=0.319 Sum_probs=47.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhccceeeecCCceeeeec
Q 005739 518 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 596 (680)
Q Consensus 518 vllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl~ls~gRpl~~s~ 596 (680)
|+|-| |+--|=+-|-.++...| .|+..--..-....=+.|+|.|.-.++|.||.-+.++..-= =.+|-||-+++
T Consensus 5 Vil~N-Dd~~tme~Vi~vL~~vf--~~~~~~A~~iml~vH~~G~avv~~~~~e~AE~k~~~v~~~a--r~~~~PL~~t~ 78 (81)
T 3o1f_A 5 VILVN-DDYTPMEFVIDVLQKFF--SYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAXVNKYA--RENEHPLLCTL 78 (81)
T ss_dssp EEEEC-CSSSCHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHHH--HHTTCCCEEEE
T ss_pred EEEEC-CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHHHHHHHHH--HHcCCCceEEE
Confidence 34444 55455555666666666 44433322333334568999999999999999998875431 24788888765
No 226
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=22.11 E-value=46 Score=29.97 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHhccccceeccCCCCCCCCCceeEEEEeehhHHHHHHHhhcccee
Q 005739 516 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 584 (680)
Q Consensus 516 ~lvllqNLdps~ts~eVedlv~~a~ke~c~AkmI~~~~~ssp~~G~A~vIFkt~eaae~ai~kl~egcl 584 (680)
.+++| ++-|.+--.|++.|+. .|. ...-+-|.- .-|||+|.++++|..|++-|...|.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs-~fg-gv~I~WidD--------TsAlvvf~~~~~a~~al~~i~~~~~ 64 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFS-AFG-NIQISWIDD--------TSAFVSLSQPEQVKIAVNTSKYAES 64 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTT-TSE-EEEEEEEET--------TEEEEEEEEECHHHHHHHHHTTCSS
T ss_pred eEEEE-eCChhhhhHHHHHHHh-ccC-CEEEEEEcC--------CeEEEEecCHHHHHHHHHhcccCCc
Confidence 35666 9999999999998864 343 555556653 3699999999999999998866554
Done!