BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005740
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 285 bits (729), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 189/510 (37%), Positives = 288/510 (56%), Gaps = 19/510 (3%)
Query: 178 VLLCVTSG--IFSGLRSGCFSIANIVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDIN 235
V L TSG I + LR+ FS + + +V FFD G L +RL++D L + +++
Sbjct: 83 VYLMQTSGQRIVNRLRTSLFS-SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 141
Query: 236 MILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHAN 295
LR Q + + +S L L + +SII +YG+Y ++ + +TQ+ A A
Sbjct: 142 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT 201
Query: 296 NVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA-YGLWNMSFITLYRSTQ 354
+A+E + +RTVR +G E E+ +Y ++ + + +E+ A G + + L +
Sbjct: 202 QLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLI 259
Query: 355 VMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 413
V++VL GG+ + ++ +L+ +++Y W+ + + S L++ +GA ++++L+
Sbjct: 260 VLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELL 319
Query: 414 DLLPSNQFLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 471
+ P F +EGV L + G ++F N+ F YP+RP VPI L+I + V A+VG
Sbjct: 320 EREPKLPF-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 472 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531
SGSGKST ++LLLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI
Sbjct: 379 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438
Query: 532 MYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 587
YG P V E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+
Sbjct: 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498
Query: 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXX 647
L++P ILLLDEATSALD+E+E+ V+ L L + RTV+VIAHRLSTIK
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVL 554
Query: 648 XXXXXXXXXNHAELLHK-GRLYAKLVKRQT 676
H ELL K +Y KL+ +Q+
Sbjct: 555 DQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 285 bits (729), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 185/494 (37%), Positives = 259/494 (52%), Gaps = 42/494 (8%)
Query: 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262
++ +FD VG L +RLT D +++ IG+ I M + G FI T W LTL
Sbjct: 155 EIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVI 214
Query: 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK 322
L I L + ++ + + A A VA+E L +RTV +G ++KEL RY
Sbjct: 215 LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274
Query: 323 IWLEKL-----------------AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI 365
LE+ AF+ I S A W + + + + + VL S+
Sbjct: 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 366 MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSE 424
+IG S Q + N+ + + GA +VF++ID PS + F
Sbjct: 335 LIGAFSVGQASP-----------------NIEAFANARGAAYEVFKIIDNKPSIDSFSKS 377
Query: 425 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484
G K + G+++F NI F YPSR V IL + L +++ + VA+VG SG GKST V L+
Sbjct: 378 GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 485 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 544
RLY+P DG + IDG + +++R+LRE IG V QEP L I NI YG +DV ++I
Sbjct: 438 RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDEI 496
Query: 545 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 602
E A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDEATSA
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 603 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELL 662
LD+ESE V+ L R RT IVIAHRLST++ NH EL+
Sbjct: 557 LDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 663 HKGRLYAKLVKRQT 676
+ +Y KLV QT
Sbjct: 613 REKGIYFKLVMTQT 626
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 168/500 (33%), Positives = 254/500 (50%), Gaps = 50/500 (10%)
Query: 203 DVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ-GAGAFINLLTLSWPLT 259
DV +FD G LT+RL D ++ G+ + +I +N G G I+L+ W LT
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLT 854
Query: 260 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELG 319
L L I ++I V + ++ ++ + +A E + RTV V T E++
Sbjct: 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV-VSLTREQKFE 913
Query: 320 R---------YKIWLEKLAFIRIRESMAYGLWNMSFITLYR------STQVMA---VLLG 361
Y+ ++K I S + S+ +R + Q+M VLL
Sbjct: 914 TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLV 973
Query: 362 GMSIMIGQVSPEQLTKYVL-YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-N 419
+I+ G ++ Q++ + Y + + A+ + ++I+ P +
Sbjct: 974 FSAIVFGAMAVGQVSSFAPDYAKATVSAS------------------HIIRIIEKTPEID 1015
Query: 420 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 479
+ ++G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST
Sbjct: 1016 SYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTV 1075
Query: 480 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG-CPKD 538
V LL R Y+P G +++DG + L+++WLR ++G V QEP L I NI YG +
Sbjct: 1076 VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135
Query: 539 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 596
V E+I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIARA++R P ILLL
Sbjct: 1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLL 1195
Query: 597 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXX 656
DEATSALD+ESE V+ L R RT IVIAHRLSTI+
Sbjct: 1196 DEATSALDTESEKVVQEALDKAREG----RTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251
Query: 657 NHAELLHKGRLYAKLVKRQT 676
H +LL + +Y +V Q
Sbjct: 1252 THQQLLAQKGIYFSMVSVQA 1271
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 285 bits (729), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 185/494 (37%), Positives = 259/494 (52%), Gaps = 42/494 (8%)
Query: 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262
++ +FD VG L +RLT D +++ IG+ I M + G FI T W LTL
Sbjct: 155 EIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVI 214
Query: 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK 322
L I L + ++ + + A A VA+E L +RTV +G ++KEL RY
Sbjct: 215 LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274
Query: 323 IWLEKL-----------------AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI 365
LE+ AF+ I S A W + + + + + VL S+
Sbjct: 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 366 MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSE 424
+IG S Q + N+ + + GA +VF++ID PS + F
Sbjct: 335 LIGAFSVGQASP-----------------NIEAFANARGAAYEVFKIIDNKPSIDSFSKS 377
Query: 425 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484
G K + G+++F NI F YPSR V IL + L +++ + VA+VG SG GKST V L+
Sbjct: 378 GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 485 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 544
RLY+P DG + IDG + +++R+LRE IG V QEP L I NI YG +DV ++I
Sbjct: 438 RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDEI 496
Query: 545 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 602
E A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDEATSA
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 603 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELL 662
LD+ESE V+ L R RT IVIAHRLST++ NH EL+
Sbjct: 557 LDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 663 HKGRLYAKLVKRQT 676
+ +Y KLV QT
Sbjct: 613 REKGIYFKLVMTQT 626
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 168/500 (33%), Positives = 254/500 (50%), Gaps = 50/500 (10%)
Query: 203 DVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ-GAGAFINLLTLSWPLT 259
DV +FD G LT+RL D ++ G+ + +I +N G G I+L+ W LT
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLT 854
Query: 260 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELG 319
L L I ++I V + ++ ++ + +A E + RTV V T E++
Sbjct: 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV-VSLTREQKFE 913
Query: 320 R---------YKIWLEKLAFIRIRESMAYGLWNMSFITLYR------STQVMA---VLLG 361
Y+ ++K I S + S+ +R + Q+M VLL
Sbjct: 914 TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLV 973
Query: 362 GMSIMIGQVSPEQLTKYVL-YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-N 419
+I+ G ++ Q++ + Y + + A+ + ++I+ P +
Sbjct: 974 FSAIVFGAMAVGQVSSFAPDYAKATVSAS------------------HIIRIIEKTPEID 1015
Query: 420 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 479
+ ++G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST
Sbjct: 1016 SYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTV 1075
Query: 480 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG-CPKD 538
V LL R Y+P G +++DG + L+++WLR ++G V QEP L I NI YG +
Sbjct: 1076 VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135
Query: 539 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 596
V E+I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIARA++R P ILLL
Sbjct: 1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLL 1195
Query: 597 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXX 656
DEATSALD+ESE V+ L R RT IVIAHRLSTI+
Sbjct: 1196 DEATSALDTESEKVVQEALDKAREG----RTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251
Query: 657 NHAELLHKGRLYAKLVKRQT 676
H +LL + +Y +V Q
Sbjct: 1252 THQQLLAQKGIYFSMVSVQA 1271
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 188/510 (36%), Positives = 287/510 (56%), Gaps = 19/510 (3%)
Query: 178 VLLCVTSG--IFSGLRSGCFSIANIVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDIN 235
V L TSG I + LR+ FS + + +V FFD G L +RL++D L + +++
Sbjct: 114 VYLMQTSGQRIVNRLRTSLFS-SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 172
Query: 236 MILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHAN 295
LR Q + + +S L L + +SII +YG+Y ++ + +TQ+ A A
Sbjct: 173 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT 232
Query: 296 NVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQ 354
+A+E + +RTVR +G E E+ +Y ++ + + +E+ A G + + L +
Sbjct: 233 QLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLI 290
Query: 355 VMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 413
V++VL GG+ + ++ +L+ +++Y W+ + + S L++ +GA ++++L+
Sbjct: 291 VLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELL 350
Query: 414 DLLPSNQFLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 471
+ P F +EGV L + G ++F N+ F YP+RP VPI L+I + V A+VG
Sbjct: 351 EREPKLPF-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 472 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531
SGSGKST ++LLLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI
Sbjct: 410 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 469
Query: 532 MYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 587
YG P V E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+
Sbjct: 470 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 529
Query: 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXX 647
L++P ILLLDEATSALD+E+E+ V+ L L + RTV+VIAH LSTIK
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHHLSTIKNANMVAVL 585
Query: 648 XXXXXXXXXNHAELLHK-GRLYAKLVKRQT 676
H ELL K +Y KL+ +Q+
Sbjct: 586 DQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 243/486 (50%), Gaps = 26/486 (5%)
Query: 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262
++ +FDT G L ++L + +R+ G+ I M + Q FI T SW LTL
Sbjct: 183 EISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVM 242
Query: 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK 322
L + ++ + ++ A A V +ET+ +RTV EL RY
Sbjct: 243 LAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYS 302
Query: 323 IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYC 382
+E+ + + + G+ SF + S + L I +G V L +
Sbjct: 303 TAVEEAKKAGVLKGLFLGI---SFGAMQASNFISFAL--AFYIGVGWVHDGSLN----FG 353
Query: 383 EWLIYATWRMVDN---------LSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLM 432
+ L + M+ + L+ L + GA +++++D P S+ G K ++
Sbjct: 354 DMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIK 413
Query: 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 492
G + N+ F YPSRP VPIL + L + A + VA+VG SG GKST ++LLLR Y+ G
Sbjct: 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
Query: 493 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 552
+I IDG + D+++ +LR+ + V QEP L I+ NI G + + E++ A K A
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEGITREEMVAACKMAN 532
Query: 553 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 610
+FI +LP GY TLV D LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE
Sbjct: 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-- 590
Query: 611 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAK 670
G++ + RT I+IAHRLSTI+ +H L+ + LY
Sbjct: 591 --GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYD 648
Query: 671 LVKRQT 676
LV QT
Sbjct: 649 LVTAQT 654
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 237/496 (47%), Gaps = 45/496 (9%)
Query: 204 VYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261
+ FFD+ A G +++RL D L I + ++ + W +
Sbjct: 842 IGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM--- 898
Query: 262 ALLICSFLSIIVSVYGQYQKR-----ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK 316
ALLI + L I+ +GQY + +V + A + +A E + +RTV+ E+
Sbjct: 899 ALLIIAILPIVA--FGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDT 956
Query: 317 ELGRYKIWLEKL----------AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM 366
Y+ + EKL AFI + ++YG + L M G++++
Sbjct: 957 ---FYENFCEKLDIPHKEAIKEAFI---QGLSYGCASSVLYLLNTCAYRM-----GLALI 1005
Query: 367 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL----QSIGATEKVFQLIDLLPSNQFL 422
I P VL + I + + +S ++ A +F ++ + L
Sbjct: 1006 ITD-PPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSL 1064
Query: 423 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 482
S + ++L G V F N+ F YP RP + IL + ++E + +A+VG SG GKST V L
Sbjct: 1065 SLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVAL 1124
Query: 483 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKN 541
L R Y+ G+I+IDG + L+ R +I V QEP L I NI+YG P V
Sbjct: 1125 LERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184
Query: 542 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEA 599
+E AA+ A +H FI LP G+ET V D LSGGQKQRIAIARA++R+P ILLLDEA
Sbjct: 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 1244
Query: 600 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHA 659
TSALD+ESE V+ L R RT IVIAHRL+T+ H
Sbjct: 1245 TSALDTESEKVVQEALDRAREG----RTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHT 1300
Query: 660 ELLHKGRLYAKLVKRQ 675
+L+ + Y KL ++Q
Sbjct: 1301 QLMSEKGAYYKLTQKQ 1316
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 251/495 (50%), Gaps = 47/495 (9%)
Query: 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261
+ V FFD ++ G L SR+T D +++++ + ++R G FI + SW L++
Sbjct: 111 MPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170
Query: 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 321
+++ +SI + V + + S Q A++ L + V ++G +E E R+
Sbjct: 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230
Query: 322 -----KIWLEKLAFIRIRE------------SMAYGLWNMSFITLYRSTQVMAVLLGGMS 364
K+ L+ + + ++A+ L+ SF ++ S + + S
Sbjct: 231 DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV-FS 289
Query: 365 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLS 423
MI + P + + N+++ Q + A + +F ++D S Q
Sbjct: 290 SMIALMRP-----------------LKSLTNVNAQFQRGMAACQTLFAILD---SEQEKD 329
Query: 424 EGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 482
EG + + R G ++F N++F YP R VP L ++ L I A + VA+VG SGSGKST +L
Sbjct: 330 EGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388
Query: 483 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 542
+ R Y+ +G I +DG L + + LR ++ V Q L + +NI Y ++ E
Sbjct: 389 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 448
Query: 543 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 600
IE AA+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEAT
Sbjct: 449 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 601 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 660
SALD+ESE ++ L L+ + RT +VIAHRLSTI+ H+E
Sbjct: 509 SALDTESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 564
Query: 661 LLHKGRLYAKLVKRQ 675
LL + +YA+L K Q
Sbjct: 565 LLAQHGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 250/495 (50%), Gaps = 47/495 (9%)
Query: 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261
+ V FFD ++ G L SR+T D +++++ + ++R G FI + SW L++
Sbjct: 111 MPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170
Query: 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 321
+++ +SI + V + + S Q A++ L + V ++G +E E R+
Sbjct: 171 LIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230
Query: 322 -----KIWLEKLAFIRIRE------------SMAYGLWNMSFITLYRSTQVMAVLLGGMS 364
++ L+ + + ++A+ L+ SF ++ S + + S
Sbjct: 231 DKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV-FS 289
Query: 365 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLS 423
MI + P + + N+++ Q + A + +F ++D S Q
Sbjct: 290 SMIALMRP-----------------LKSLTNVNAQFQRGMAACQTLFTILD---SEQEKD 329
Query: 424 EGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 482
EG + ++R G V+F N++F YP R VP L ++ L I A + VA+VG SGSGKST +L
Sbjct: 330 EGKRVIERATGDVEFRNVTFTYPGRD-VPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388
Query: 483 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 542
+ R Y+ +G+I +DG L + + LR ++ V Q L + +NI Y + E
Sbjct: 389 ITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSRE 448
Query: 543 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 600
IE AA+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEAT
Sbjct: 449 QIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 601 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 660
SALD+ESE ++ L L+ + RT +VIAHRLSTI+ H +
Sbjct: 509 SALDTESERAIQAALDELQKN----RTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHND 564
Query: 661 LLHKGRLYAKLVKRQ 675
LL +YA+L K Q
Sbjct: 565 LLEHRGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 244/481 (50%), Gaps = 19/481 (3%)
Query: 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTL----SWP 257
+ V FFD E+ GGL SR+T D ++++ + I+R +GA + I LLTL SW
Sbjct: 111 MPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVR---EGA-SIIGLLTLMFWNSWQ 166
Query: 258 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKE 317
L+L +++ ++ +S + ++ S Q H + A++ L + V YG +E E
Sbjct: 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVE 226
Query: 318 LGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLT 376
R+ + ++ A + + I + S + AVL L + + +++P T
Sbjct: 227 RKRFDKVSNSMRQQTMKLVSAQSIAD-PVIQMIASLALFAVLFLASVDSIRAELTPGTFT 285
Query: 377 KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 436
L+ + S + + A + +F L+DL + + +R+ G V
Sbjct: 286 VVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVD 343
Query: 437 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 496
+++F Y + P L+HV +I + VA+VG SGSGKST NL R Y+ G I +
Sbjct: 344 VKDVTFTYQGKEK-PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402
Query: 497 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 556
DG + D + LR V Q L I +NI Y + E IE AA+QA+ EF
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF 462
Query: 557 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 614
I ++P G +T++ ++ LSGGQ+QR+AIARA+LRD +L+LDEATSALD+ESE ++
Sbjct: 463 IENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522
Query: 615 LHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKR 674
L L+ + +TV+VIAHRLSTI+ HA+LL + YA+L +
Sbjct: 523 LDELQKN----KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI 578
Query: 675 Q 675
Q
Sbjct: 579 Q 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 236/483 (48%), Gaps = 22/483 (4%)
Query: 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261
L F+ VG + SR+ D ++ + I + I + + A + L LTL+
Sbjct: 107 LSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166
Query: 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 321
AL I F + V V+ ++ + + A E + + V+ + E+ E +
Sbjct: 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF 226
Query: 322 KIWLEKLAFIRIRESMAYGLWNM-SFITLYRSTQVMAVLLGGMSIMI---GQVSPEQLTK 377
+K + ++ + WN SF + T + +++ G+ + G ++ L
Sbjct: 227 ----DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAA 282
Query: 378 YVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL---MGH 434
+V Y E L R+V + ++L QS + ++VFQLID + + GV Q + G
Sbjct: 283 FVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNGVGAQPIEIKQGR 339
Query: 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 494
+ ++SF Y PIL + L+IE E VA VG+SG GKST +NL+ R Y+ + GQI
Sbjct: 340 IDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 495 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 554
IDG + D LR +IG V Q+ L +K NI+ G P E +E AAK A H
Sbjct: 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE-AAKMANAH 457
Query: 555 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 612
+FI++LP GY+T V + LSGGQKQR++IAR L +P IL+LDEATSALD ESE ++
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 613 GVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLV 672
L L D RT +++AHRLSTI H EL+ K Y L
Sbjct: 518 EALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 573
Query: 673 KRQ 675
Q
Sbjct: 574 SIQ 576
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 201 bits (512), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 139/500 (27%), Positives = 240/500 (48%), Gaps = 11/500 (2%)
Query: 178 VLLCVTSGIFSGLRSGCFSIANIVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMI 237
++L ++ + LR F V V FFD G + SR+ D ++NV+GN I
Sbjct: 100 IMLTLSQDVVFRLRKELFEKLQRV-PVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQF 158
Query: 238 LRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNV 297
+ AGA I + ++ L+L L I +I + ++ Q N +
Sbjct: 159 FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGI 218
Query: 298 AQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMA 357
+E + + ++++ EEKE+ ++ E L + + + G+ + +
Sbjct: 219 IEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALI 278
Query: 358 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 417
GG + ++ + ++ Y + + + + ++ + E++F+++DL
Sbjct: 279 SGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL-E 337
Query: 418 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 477
+ + V+L+ + G ++F N+ F Y + P+L + I+ + VA+VG +GSGK+
Sbjct: 338 EEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKT 395
Query: 478 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 537
T VNLL+R Y+ GQI +DG + + LR IG V Q+ L +K N+ YG P
Sbjct: 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP- 454
Query: 538 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 595
+E+I+ AAK + FI LP GYET++ D + LS GQ+Q +AI RA L +P IL+
Sbjct: 455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514
Query: 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXX 655
LDEATS +D+++E ++ + L +T I+IAHRL+TIK
Sbjct: 515 LDEATSNVDTKTEKSIQAAMWKLMEG----KTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570
Query: 656 XNHAELLHKGRLYAKLVKRQ 675
H EL+ K Y +L Q
Sbjct: 571 GKHDELIQKRGFYYELFTSQ 590
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 490
L G VQF ++SF YP+RP V +L + T+ EV A+VG +GSGKST LL LY+P+
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 491 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 550
GQ+ +DG PL + R+L ++ VGQEPQ+ ++ NI YG + E+I AA +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 551 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608
+ H FI LP GY+T VD+ LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 668
V+ +L+ + + R+V++I LS ++ H +L+ K Y
Sbjct: 191 LQVEQLLY--ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
Query: 669 AKLVK 673
+V+
Sbjct: 249 WAMVQ 253
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 179 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 235 LYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 237 LYQLQSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ D+ATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG +GSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 237 LYQLQSD 243
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IA RLST+K H ELL + LY+
Sbjct: 179 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 235 LYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 435 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 670
+H + CK RTVI+IA RLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 671 LVKRQTE 677
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 137/491 (27%), Positives = 246/491 (50%), Gaps = 31/491 (6%)
Query: 195 FSIANIVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTL 254
FSI+N V F T + L +RLT D +L N++ + +++R L G + + +
Sbjct: 109 FSISN----VNRFHTSS---LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIV--MAV 159
Query: 255 SWPLTLSALLICSFLSIIVSVYGQYQKRASVL---TQECNAHANNVAQETLCMMRTVRVY 311
S + LS++LI + IV ++ K+ + L QE N V +E L +R VR +
Sbjct: 160 SINVKLSSVLIF-LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAF 218
Query: 312 GTEEKELGRYKIWLEKLAFIRIRESM--AYGLWNMS---FITLYRSTQVMAVLLGGMSIM 366
EE E ++ E L R S+ A+ L + FI + + + GG+ +
Sbjct: 219 RREEYENENFRKANESL-----RRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVR 273
Query: 367 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 426
Q+ + Y Y ++++ + + L+ ++++ + ++V ++++ P+ + +
Sbjct: 274 NNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNAL 333
Query: 427 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486
L + G V F N+ F Y T P+L+ V +++ +VA++G +GSGKST +NL+ RL
Sbjct: 334 ALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392
Query: 487 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 546
+P G++ +D + + ++ LR I V QE L IK N+ +G +D +++I
Sbjct: 393 IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG-REDATDDEIVE 451
Query: 547 AAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 604
AAK A +H+FI+SLP GY++ V+ SGGQKQR++IARA+++ P +L+LD+ TS++D
Sbjct: 452 AAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Query: 605 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHK 664
+E + L C T +I ++ T H ELL
Sbjct: 512 PITEKRILDGLKRYTKGC----TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
Query: 665 GRLYAKLVKRQ 675
+ Y ++ + Q
Sbjct: 568 CKPYREIYESQ 578
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 4/245 (1%)
Query: 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 490
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 491 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 550
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 551 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608
+ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 668
V+ +L+ + RTV++I H+LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 669 AKLVK 673
+V+
Sbjct: 251 RSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 490
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 491 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 550
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 551 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608
+ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 668
V+ +L+ + RTV++I +LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 669 AKLVK 673
+V+
Sbjct: 251 RSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 8/239 (3%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
++ F Y + IL + + N ++A G SG GKST +LL R Y+P+ G+I IDG
Sbjct: 6 HVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
P+ ++ + R +IGFV Q+ ++ I+ N+ YG D +ED+ A+ F+
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 559 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 616
++P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+ L
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 617 ALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 675
+L RT +VIAHRLSTI H EL+ LYAK V Q
Sbjct: 184 SLMK----GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%)
Query: 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 490
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 491 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 550
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 551 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608
+ H+FI P GY+T V + + L+ GQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 668
V+ +L+ + RTV++I +LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 669 AKLVK 673
+V+
Sbjct: 251 RSMVE 255
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 134/242 (55%), Gaps = 11/242 (4%)
Query: 433 GHVQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
G ++F N+ F Y R T L V T+ + +A+VG SG+GKST + LL R Y+ S
Sbjct: 52 GRIEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 551
G I IDG ++ + LR IG V Q+ L I NI YG N+++E AA+ A
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT-AGNDEVEAAAQAA 167
Query: 552 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 609
+H+ I++ P GY T V + LSGG+KQR+AIAR IL+ P I+LLDEATSALD+ +E
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 610 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYA 669
++ L + C RT IV+AHRLST+ H LL +G +YA
Sbjct: 228 AIQASLAKV---C-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYA 283
Query: 670 KL 671
+
Sbjct: 284 DM 285
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
+++F +++F YP + L + I + A+VG +GSGKST LL R Y+ ++G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 553
I I G + + +R IG V Q+ L IK NI+YG D +E++ A K A +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQL 134
Query: 554 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
++FI +LP ++T+V + LSGG++QRIAIAR +L+DP I++ DEATS+LDS++E+
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKL 671
+ + LR + RT+I+IAHRLSTI + H +LL YA++
Sbjct: 195 QKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
Query: 672 VKRQT 676
Q+
Sbjct: 251 WNMQS 255
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 494
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G+I
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 495 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 551
IDG L D ++ +RE++G V Q L M + +NI P V+ +W ++A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 136
Query: 552 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 609
L G + D LSGGQ QR+AIARA+ +P I+L DE TSALD E
Sbjct: 137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 610 YVKGVLHALRNDCKTKRTVIVIAHRLS 636
V V+ L N+ T++V+ H +
Sbjct: 197 EVLSVMKQLANEG---MTMVVVTHEMG 220
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 494
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G+I
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 495 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 551
IDG L D ++ +RE++G V Q L M + +NI P V+ +W ++A
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 115
Query: 552 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 609
L G + D LSGGQ QR+AIARA+ +P I+L DE TSALD E
Sbjct: 116 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 175
Query: 610 YVKGVLHALRNDCKTKRTVIVIAHRLS 636
V V+ L N+ T++V+ H +
Sbjct: 176 EVLSVMKQLANEG---MTMVVVTHEMG 199
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 19/214 (8%)
Query: 435 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 492
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 2 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 493 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 546
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 116
Query: 547 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 117 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 607 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 639
+ + +L L++ + + T+++I H + +K
Sbjct: 175 T---TRSILELLKDINRRLGLTILLITHEMDVVK 205
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 25/201 (12%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 509
L +V L I+ E V+I+G SGSGKST +N++ L +P++G++YID DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 510 -REKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 558
R+KIGFV Q+ L+ + +++ +++ + E+ A K A + E F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 559 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 618
P + LSGGQ+QR+AIARA+ +P I+L D+ T ALDS++ + +L L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 619 RNDCKTKRTVIVIAHRLSTIK 639
+ +TV+V+ H ++ +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 25/201 (12%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 509
L +V L I+ E V+I G SGSGKST +N++ L +P++G++YID DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 510 -REKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 558
R+KIGFV Q+ L+ + +++ +++ E+ A K A + E F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 559 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 618
P + LSGGQ+QR+AIARA+ +P I+L DE T ALDS++ + +L L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 619 RNDCKTKRTVIVIAHRLSTIK 639
+ +TV+V+ H ++ +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 118/214 (55%), Gaps = 19/214 (8%)
Query: 435 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 492
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 493 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 546
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 547 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL D+ATSALD
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 607 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 639
+ + +L L++ + + T+++I H + +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEMDVVK 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 26/220 (11%)
Query: 435 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
V+ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 494 IYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDI 544
+YID DLD L R+KIGFV Q+ L+ + +++ +++ + E+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 545 EWAA----KQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 599
A K A + E F P + LSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 122 RKRALECLKMAELEERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 600 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 639
T ALDS++ + +L L + +TV+V+ H ++ +
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVAR 210
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 117/214 (54%), Gaps = 19/214 (8%)
Query: 435 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 492
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 493 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 546
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGXIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 547 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL D+ATSALD
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 607 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 639
+ + +L L++ + + T+++I H +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEXDVVK 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
L+++ L +E+ E I+G +G+GK+ F+ L+ + P G+I +DG +TDL +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 513 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVD 569
I FV Q L M++K N+ +G K +K+ + + A+ + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL------- 126
Query: 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG++QR+A+ARA++ +P ILLLDE SALD ++ + +L L K K TV+
Sbjct: 127 --TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK--KNKLTVL 182
Query: 630 VIAH 633
I H
Sbjct: 183 HITH 186
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
+N + LTI+ E + ++G SG GK+T + ++ L EP++G+IY D D+ +L K
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 81
Query: 513 ---IGFVGQEPQL-LQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 563
I V Q + M + NI + PKD ++ + WAA+ + E + P
Sbjct: 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141
Query: 564 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 623
LSGGQ+QR+A+ARAI+ +P +LL+DE S LD++ ++ + L+ K
Sbjct: 142 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 190
Query: 624 TKRTVIVIAH 633
K T I + H
Sbjct: 191 LKVTTIYVTH 200
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
+N + LTI+ E + ++G SG GK+T + ++ L EP++G+IY D D+ +L K
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 82
Query: 513 ---IGFVGQEPQL-LQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 563
I V Q + M + NI + PKD ++ + WAA+ + E + P
Sbjct: 83 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 142
Query: 564 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 623
LSGGQ+QR+A+ARAI+ +P +LL+DE S LD++ ++ + L+ K
Sbjct: 143 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 191
Query: 624 TKRTVIVIAH 633
K T I + H
Sbjct: 192 LKVTTIYVTH 201
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
LN++ L I+ E +A++G SGSGKST + + +Y+P+ G+IY D +T+L +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 513 IGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 566
+G V Q L M + NI + P++ ++ + AK ++ + + P
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 567 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 626
LSGGQ+QR+AIARA++++P +LLLDE S LD+ V+ L L+ +
Sbjct: 134 ------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-- 185
Query: 627 TVIVIAH 633
T + + H
Sbjct: 186 TTVYVTH 192
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 494
++FV + YP + V I E+V ++G SGSGK+T + L+ L P+ G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 495 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDIEWAA 548
+I G +TDL + + +G V Q L Q M + N+ +G PKD + +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 549 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606
+ + + P LSGGQ+QR+A+ARA+ P +LL DE +A+D++
Sbjct: 131 RFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
++ ++SF Y +L V E ++ +VG +GSGK+T + +L L + G+
Sbjct: 11 RIELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GE 66
Query: 494 IYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 551
I++DG P D LR+ +G+V Q P Q++ ++ ++ + + + ++ E +
Sbjct: 67 IFLDGSPA---DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSL-EIMGLDESEMRKRIK 122
Query: 552 YVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 609
V E + G L D L SGGQKQR+AIA + RD L LDE S LD S+
Sbjct: 123 KVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 610 YVKGVLHALRNDCKTKRTVIVIAHRLS 636
+ VL +L+N+ K +I++ H L
Sbjct: 178 EIFQVLESLKNEGK---GIILVTHELE 201
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 432 MGHVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 489
MG ++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 490 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWA 547
+ G + DG +IR IG Q P Q + + + + D
Sbjct: 62 TSGDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 548 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
K+A EF+ +++ D LSGG+K+R+AIA I+ +P IL+LDE LD
Sbjct: 119 VKKAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 606 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638
E + + ++ + +TVI+I+H + T+
Sbjct: 174 EGKTDLLRIVEKWKT---LGKTVILISHDIETV 203
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 508
IL + L+++ E V+I+G SGSGKST + +L L P++G+++++G + + ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 509 LR-EKIGFVGQE----PQLLQMD--IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 561
LR K+GFV Q P+L ++ I + G PK E E+ + + + + P
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 562 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 615
YE LSGG++QR+AIARA+ +P +L DE T LDS + V +
Sbjct: 139 --YE-------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 26/200 (13%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 509
L++V + IE E I+G SG+GK+TF+ ++ L PS G++Y D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 510 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 560
KIG V Q P L + NI + K+ + +E AK +H +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 561 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 620
P LSGGQ+QR+A+ARA+++DP++LLLDE S LD+ + ++ +++
Sbjct: 138 PRE---------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 621 DCKTKRTVIVIAHRLSTIKA 640
T++V++H + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRWLR 510
L + + I+ EV AI+G +G GKST + +PS G+I D P+ + I LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 511 EKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 563
E IG V Q+P QL + ++ +G P+D + ++ A K+ G
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR-----------TG 132
Query: 564 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 621
E L D LS GQK+R+AIA ++ +P +L+LDE T+ LD + +L ++ +
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 622 CKTKRTVIVIAHRLSTI 638
T+I+ H + +
Sbjct: 193 LGI--TIIIATHDIDIV 207
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
M ++ VN+ ++ V ++ V ++ E VA++G SG GK+T + +L +Y+P+
Sbjct: 1 MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 545
G+IY D + D+ ++ ++G V Q L M + NI + KD + +
Sbjct: 58 GEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 546 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
A++ + + P LSGGQ+QR+A+ARA+++ P +LL DE S LD+
Sbjct: 116 EIARKLLIDNLLDRKPTQ---------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 434 HVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 549
G + DG +IR IG Q P Q + + + + D K
Sbjct: 62 GDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 550 QAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 607
+A EF+ +++ D LSGG+K+R+AIA I+ +P IL+LDE LD E
Sbjct: 119 KAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 608 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638
+ + ++ + +TVI+I+H + T+
Sbjct: 174 KTDLLRIVEKWKT---LGKTVILISHDIETV 201
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 509
L++V + IE E I+G SG+GK+TF+ ++ L PS G++Y D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 510 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 560
KIG V Q P L + NI + K+ + +E AK +H +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 561 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 620
P LSG Q+QR+A+ARA+++DP++LLLDE S LD+ + ++ +++
Sbjct: 138 PRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 621 DCKTKRTVIVIAHRLSTIKA 640
T++V++H + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
M + N +F + +R P LN + +I +VA+VG G GKS+ ++ LL + +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 551
G + I G + +V Q+ + ++ NI++GC +E ++
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC-------QLEEPYYRS 99
Query: 552 YVHEFIL-----SLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 604
+ L LP G T + + LSGGQKQR+++ARA+ + I L D+ SA+D
Sbjct: 100 VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 605 SE-SEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 660
+ +H + V+ L+N +T I++ H +S + ++ E
Sbjct: 160 AHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE 214
Query: 661 LLHKGRLYAKLVK 673
LL + +A+ ++
Sbjct: 215 LLARDGAFAEFLR 227
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
++ F Q ++ IK NI++G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYR--YKSVVKACQLQQDIT 144
Query: 559 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
++ F Q ++ IK NI++G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYR--YKSVVKACQLQQDIT 144
Query: 559 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519
I+ EV+ IVG +G GK+TFV L + EP++G+I D LT V +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD---LT-------------VAYK 352
Query: 520 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 577
PQ ++ D + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 353 PQYIKADYEGTVYELLSK------IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Query: 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXE--KNEKTALVVEH 460
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 31/194 (15%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDIRWLRE 511
++ VV IVG +G+GKST V +L P+ DG I F +L + +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG--VIRAFRGNELQNYFEKL 101
Query: 512 KIGFVGQ--EPQLLQMDIKSNIMYGCPKDVKNEDIEW---AAKQAYVHEFILSLPCGYET 566
K G + +PQ + + PK VK + IE A + + E + +L E
Sbjct: 102 KNGEIRPVVKPQYVDL---------IPKAVKGKVIELLKKADETGKLEEVVKALEL--EN 150
Query: 567 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 624
+++ ++ LSGG+ QR+AIA A+LR+ DE +S LD A+R +
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL---NAARAIRRLSEE 207
Query: 625 KRTVIVIAHRLSTI 638
++V+V+ H L+ +
Sbjct: 208 GKSVLVVEHDLAVL 221
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511
IL ++ +I + V ++G +GSGKST ++ LRL ++G+I IDG + + R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD 570
G + Q+ + + N+ +++I A + + I P + LVD
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 571 D-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
+LS G KQ + +AR++L ILLLDE ++ LD + ++ L DC TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC----TVI 208
Query: 630 VIAHRLSTI 638
+ R+ +
Sbjct: 209 LCEARIEAM 217
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
++ F Q ++ IK NI+ G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 559 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
++ F Q ++ IK NI+ G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 559 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519
I EV+ IVG +G GK+TFV +L + EP++G++ D LT V +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 422
Query: 520 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 577
PQ ++ + + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 423 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 476
Query: 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 530
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 465 VVAIVGLSGSGKSTFVNLLL-----RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ 518
VV IVG +G+GK+T V +L L E +D I F +L + R K G +
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 519 --EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDL--L 573
+PQ + + PK VK + E K V +F + ++D +L L
Sbjct: 179 VVKPQYVDL---------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 229
Query: 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633
SGG+ QR+AIA A+LR DE +S LD V V+ L N+ K V+V+ H
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK---AVLVVEH 286
Query: 634 RLSTI 638
L+ +
Sbjct: 287 DLAVL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519
I EV+ IVG +G GK+TFV +L + EP++G++ D LT V +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 408
Query: 520 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 577
PQ ++ + + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 409 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
Query: 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 516
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 465 VVAIVGLSGSGKSTFVNLLL-----RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ 518
VV IVG +G+GK+T V +L L E +D I F +L + R K G +
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 164
Query: 519 --EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDL--L 573
+PQ + + PK VK + E K V +F + ++D +L L
Sbjct: 165 VVKPQYVDL---------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 215
Query: 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633
SGG+ QR+AIA A+LR DE +S LD V V+ L N+ K V+V+ H
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK---AVLVVEH 272
Query: 634 RLSTI 638
L+ +
Sbjct: 273 DLAVL 277
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 468 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 526
++G +G+GKS F+ L+ + +P G++ ++G +T L R IGFV Q+ L +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 527 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 584
+ NI YG ++N + ++ G L+D LSGG++QR+A+A
Sbjct: 87 VYRNIAYG----LRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
Query: 585 RAILRDPAILLLDEATSALDSESEHYVKGVL 615
RA++ P +LLLDE SA+D ++ KGVL
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKT----KGVL 165
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 505
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G + D D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 506 -------IRWLREKIGFVGQEPQL-LQMDIKSNIM------YGCPK-DVKNEDIEWAAKQ 550
+R LR ++ V Q L M + N+M G K D + +++ AK
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 551 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 610
P LSGGQ+QR++IARA+ +P +LL DE TSALD E
Sbjct: 141 GIDERAQGKYPVH---------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---L 188
Query: 611 VKGVLHALRNDCKTKRTVIVIAHRLS 636
V VL ++ + +T++V+ H +
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMG 214
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 505
V + + L ++ E + ++G SG GK+T + ++ L EPS GQIYI + D +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 506 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG 563
+ I V Q L M + NI + + V ++I+ ++ V E + G
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE--VAELL-----G 128
Query: 564 YETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 621
L++ LSGGQ+QR+A+ RAI+R P + L+DE S LD++ ++ L L+
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 622 CKTKRTVIVIAH 633
T I + H
Sbjct: 189 LGV--TTIYVTH 198
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
++ F Q ++ IK NI+ + + + + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSV---VKACQLQQDIT 143
Query: 559 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 21/199 (10%)
Query: 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493
H+ ++ SF P+LN + L+++ E++ I+G SG GK+T + L +P G+
Sbjct: 6 HIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 494 IYIDGFPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAA 548
I + G + T+L +R R +G++ QE L + + NI YG + N A
Sbjct: 61 ISLSGKTIFSKNTNLPVRERR--LGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQ 114
Query: 549 KQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606
++ + E +L L G L LSGGQ+QR A+ARA+ DP ++LLDE SALD +
Sbjct: 115 ERQRI-EAMLEL-TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
Query: 607 SEHYVK-GVLHALRNDCKT 624
++ ++ ALR + K+
Sbjct: 173 LRRQIREDMIAALRANGKS 191
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 81
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 82 --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 570 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 625
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 192
Query: 626 RTVIVIAHRLSTIK 639
+T I++ ++ +K
Sbjct: 193 KTRILVTSKMEHLK 206
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 44/215 (20%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------VK----NEDI-EW 546
+I F Q ++ IK NI+ G D +K EDI ++
Sbjct: 100 -------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKF 146
Query: 547 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-- 604
A K V L G T LSGGQ+ RI++ARA+ +D + LLD LD
Sbjct: 147 AEKDNIV------LGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 605 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 639
+E E + V + N +T I++ ++ +K
Sbjct: 195 TEKEIFESCVCKLMAN-----KTRILVTSKMEHLK 224
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 70 --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 570 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 625
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 180
Query: 626 RTVIVIAHRLSTIK 639
+T I++ ++ +K
Sbjct: 181 KTRILVTSKMEHLK 194
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
N+ F+Y + + + + +++A++G +G GKST ++LLL ++ P G+I +
Sbjct: 9 NLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
+ IGFV Q + P DI + +++ F
Sbjct: 65 -----------YQSIGFVPQ-------------FFSSPFAYSVLDIVLMGRSTHINTFAK 100
Query: 559 SLPCGYETLVD--DDL------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 604
Y+ + D L LSGGQ+Q I IARAI + ++LLDE TSALD
Sbjct: 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 605 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 640
++ V +L L TV+ H+ + + A
Sbjct: 161 LANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVA 194
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 32/206 (15%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 513 IGFVG--QEPQ-LLQMDIKSNIMYG--CPKD-----------VKNEDIEWAAKQAYVHEF 556
G V Q PQ L +M + N++ G CP + + E+ E K + EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-EMVEKAFKILEF 140
Query: 557 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 616
L L Y+ + LSGGQ + + I RA++ +P ++++DE + + G+ H
Sbjct: 141 -LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------APGLAH 190
Query: 617 ALRN---DCKTKR-TVIVIAHRLSTI 638
+ N + K K T ++I HRL +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDL 504
T+ + + L I N V AIVG S SGKST + + + P+ G++ G L +
Sbjct: 20 TIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTM 79
Query: 505 ------DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ--AYVHEF 556
IRW ++I V Q Q ++ ++ V+ + W+ + E
Sbjct: 80 REEELRKIRW--KEIALVPQAAQQ-SLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK 136
Query: 557 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
+ + E +++ LSGG KQR+ IA A+L DP +L+LDE TSALD ++ ++
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHI 193
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 499 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEF 556
+I F Q ++ IK NI+ V ++ + + K + E
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEED 141
Query: 557 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVK 612
I ++ + LSGGQ+ RI++ARA+ +D + LLD LD +E E +
Sbjct: 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 613 GVLHALRNDCKTKRTVIVIAHRLSTIK 639
V + N +T I++ ++ +K
Sbjct: 202 CVCKLMAN-----KTRILVTSKMEHLK 223
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 545
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 546 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
A+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 606 ESEHYVKGVLHALRNDCKTKRTVIVIAH 633
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 545
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 546 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
A+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 606 ESEHYVKGVLHALRNDCKTKRTVIVIAH 633
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511
++N V L I + E+VAI+G +G+GKST + LL PS G+ ++ G L + L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 512 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 570
+ Q +L + I G ++D +QA + + + C D
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD-----RQA-LQQVMAQTDCLALAQRDY 139
Query: 571 DLLSGGQKQRIAIARAILR------DPAILLLDEATSALD 604
+LSGG++QR+ +AR + + P L LDE TSALD
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 567
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 100 --RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 568 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 623
+ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 624 TKRTVIVIAHRLSTIK 639
+T I++ ++ +K
Sbjct: 210 --KTRILVTSKMEHLK 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
V + + L I+ E + ++G SG GK+T + + L EP+ GQIYI+ + D
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD------ 72
Query: 510 REKIGFVGQEPQLLQMDIKSNIMY----------------GCPKDVKNEDIEWAAKQAYV 553
EK FV + + + +S +Y PK ++ + A+ +
Sbjct: 73 PEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
Query: 554 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 613
E + P LSGGQ+QR+A+ RAI+R P + L DE S LD++ +
Sbjct: 133 TELLNRKPRE---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRA 183
Query: 614 VLHALRNDCKTKRTVIVIAH 633
L L+ T I + H
Sbjct: 184 ELKKLQRQLGV--TTIYVTH 201
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 545
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 546 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
A+ + + P LSGGQ+QR+AI R ++ +P++ LLD+ S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 606 ESEHYVKGVLHALRNDCKTKRTVIVIAH 633
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 100 --RISFCSQFSWIMPGTIKENIIFGVSYDEYR--YRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 570 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 625
+ LS GQ+ +I++ARA+ +D + LLD LD +E E + V + N
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 210
Query: 626 RTVIVIAHRLSTIK 639
+T I++ ++ +K
Sbjct: 211 KTRILVTSKMEHLK 224
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 25/194 (12%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
+I F Q ++ IK NI+ + + + K + E I ++
Sbjct: 70 --RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV---IKACQLEEDISKFAEKDNIVLG 124
Query: 570 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 625
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 179
Query: 626 RTVIVIAHRLSTIK 639
+T I++ ++ +K
Sbjct: 180 KTRILVTSKMEHLK 193
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 513 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 552
G V Q PQ L +M + N++ G PK+ E +E A K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 553 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 612
+ EF L L Y+ + LSGGQ + + I RA++ +P ++++D+ + +
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV-------AP 186
Query: 613 GVLHALRN---DCKTKR-TVIVIAHRLSTI 638
G+ H + N + K K T ++I HRL +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 513 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 552
G V Q PQ L +M + N++ G PK+ E +E A K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 553 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 612
+ EF L L Y+ + LSGGQ + + I RA++ +P ++++DE + +
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------AP 186
Query: 613 GVLHALRN---DCKTKR-TVIVIAHRLSTI 638
G+ H + N + K K T ++I HRL +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 39/196 (19%)
Query: 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 510
P+L + +TIE VV G +G GK+T + + +P G+I +G P+T ++
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VK 77
Query: 511 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY-----VHEFILSLPCGYE 565
KI F+ +E + P+ + ED A Y +E + +L E
Sbjct: 78 GKIFFLPEEIIV-------------PRKISVEDYLKAVASLYGVKVNKNEIMDAL----E 120
Query: 566 TLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHAL 618
++ DL LS G +R+ +A +L + I +LD+ A+D +S+H V K +L L
Sbjct: 121 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 619 RNDCKTKRTVIVIAHR 634
+ ++ +++I+ R
Sbjct: 181 K-----EKGIVIISSR 191
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 26/156 (16%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 509
+LN L ++ I G +G GKST + + ++GQ+ DGFP T + R ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
I + +L +S + G + +K++ IE+ + E I ++P
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEMI-AMPISA----- 548
Query: 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 549 ---LSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 416 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 473
P +L EGVK ++ V+ N+ F YP S+P + +N C + +A++G +G
Sbjct: 655 FPEPGYL-EGVKTKQ-KAIVKVTNMEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 709
Query: 474 SGKSTFVNLLLRLYEPSDGQIY 495
+GKST +N+L P+ G++Y
Sbjct: 710 AGKSTLINVLTGELLPTSGEVY 731
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVI 631
LSGGQK ++ +A + P +++LDE T+ LD +S L AL K + VI+I
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS-------LGALSKALKEFEGGVIII 954
Query: 632 AH 633
H
Sbjct: 955 TH 956
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 567
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 100 --RISFCSQFSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 568 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 623
+ + LS GQ+ +I++ARA+ +D + LLD LD +E E + V + N
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 624 TKRTVIVIAHRLSTIK 639
+T I++ ++ +K
Sbjct: 210 --KTRILVTSKMEHLK 223
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 509
+LN L ++ I G +G GKST + ++GQ+ DGFP T + R ++
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 494
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
I + +L +S + G + +K++ IE+ + E I + P
Sbjct: 495 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 541
Query: 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 542 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 416 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 473
P +L EGVK ++ V+ N F YP S+P + +N C + +A++G +G
Sbjct: 649 FPEPGYL-EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 703
Query: 474 SGKSTFVNLLLRLYEPSDGQIY 495
+GKST +N+L P+ G++Y
Sbjct: 704 AGKSTLINVLTGELLPTSGEVY 725
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 607
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 509
+LN L ++ I G +G GKST + ++GQ+ DGFP T + R ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569
I + +L +S + G + +K++ IE+ + E I + P
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 547
Query: 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 548 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 416 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 473
P +L EGVK ++ V+ N F YP S+P + +N C + +A++G +G
Sbjct: 655 FPEPGYL-EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 709
Query: 474 SGKSTFVNLLLRLYEPSDGQIY 495
+GKST +N+L P+ G++Y
Sbjct: 710 AGKSTLINVLTGELLPTSGEVY 731
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 607
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 19/190 (10%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511
IL + IE E+ ++G +G+GK+T + ++ L +PS G + + G + + + +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 512 KIGFVGQEP------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 565
I ++ +E Q ++ Y E +E A + A + E I Y
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY- 147
Query: 566 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 625
S G +++ IARA++ +P + +LDE TS LD + V+ + L+ +
Sbjct: 148 --------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI---LKQASQEG 196
Query: 626 RTVIVIAHRL 635
T++V +H +
Sbjct: 197 LTILVSSHNM 206
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDL--DIRW 508
IL + I + + GL+G+GK+T +N+L YEP + G + + G +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 509 LREKIGFVG-------QEPQ-----LLQMDIKSNIMYGCPKD-VKNED---IEWAAKQAY 552
+R+ IGFV QE + ++ KS +Y D ++NE ++ A
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 553 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 604
++I GY LS G+KQR+ IARA+ P +L+LDE + LD
Sbjct: 155 AQQYI-----GY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 441 SFHYPSRPTVP---ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497
+F YPS +LN +E++ ++G +G+GK+T + LL +P +GQ
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---- 408
Query: 498 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 557
P ++ ++ + F G QL I+ + N + +
Sbjct: 409 DIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL--------NPQFQTDVVK------- 453
Query: 558 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 615
P + ++D ++ LSGG+ QR+AI A+ I L+DE ++ LDSE V+
Sbjct: 454 ---PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 616 HALRNDCKTKRTVIVIAH 633
R K+T ++ H
Sbjct: 511 R--RFILHNKKTAFIVEH 526
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514
H T +V+ +VG +G GKST + +L +P+ G+ D P I++ R
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF--DDPPEWQEIIKYFR---- 148
Query: 515 FVGQEPQ-----LLQMDIKSNI----MYGCPKDVKNE----------DIEWAAKQAYVHE 555
G E Q +L+ DIK+ I + P+ +K +E + + +
Sbjct: 149 --GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI 206
Query: 556 FILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 613
IL L E ++ D+ LSGG+ QR AI + +++ + + DE +S LD +
Sbjct: 207 KILQL----ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ 262
Query: 614 VLHALRNDCKTKRTVIVIAHRLSTI 638
++ +L + VI + H LS +
Sbjct: 263 IIRSL---LAPTKYVICVEHDLSVL 284
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 511
+ + L + ++V ++G +G+GK+T ++ + L G+I +G +T+ + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 512 KIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL-PCGYE 565
I V + ++ ++ + N+ G K+ D+EW I SL P E
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEW----------IFSLFPRLKE 131
Query: 566 TLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 603
L LSGG++Q +AI RA+ P +L DE + L
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 508
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 509 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 559
E I Q P LQ + + Y + + D + ++ +L
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 151
Query: 560 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 619
+P T + SGG+K+R I + + +P + +LDE+ S LD ++ V +++LR
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 620 NDCKTKRTVIVIAH 633
+ KR+ I++ H
Sbjct: 212 D---GKRSFIIVTH 222
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 508
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 509 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 559
E I Q P LQ + + Y + + D + ++ +L
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 132
Query: 560 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 619
+P T + SGG+K+R I + + +P + +LDE+ S LD ++ V +++LR
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 620 NDCKTKRTVIVIAH 633
+ KR+ I++ H
Sbjct: 193 D---GKRSFIIVTH 203
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 458 LTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516
+ +E N E V I+G +GSGK+T + + L P G I+I+G +++R +R I +
Sbjct: 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRKIRNYIRYS 77
Query: 517 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSG 575
P+ ++ + N + +++K D + E + +L G E L LS
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLD------RDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611
GQ + + A+ P I+ LDE +D+ H +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 38/182 (20%)
Query: 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 523
E++ I+G +G GK+TF +L+ G+I D G V E Q+L
Sbjct: 295 EIIGILGPNGIGKTTFARILV-------GEITADE---------------GSVTPEKQIL 332
Query: 524 QMDIKSNIMYGCPKDVKNEDIEWAAKQA------YVHEFI--LSLPCGYETLVDDDLLSG 575
K ++ + +E A+K A + E L+L E+ V+D LSG
Sbjct: 333 SY--KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND--LSG 388
Query: 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV-IVIAHR 634
G+ Q++ IA + ++ + +LD+ +S LD E E Y+ V A++ + ++ V +I H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVE-ERYI--VAKAIKRVTRERKAVTFIIDHD 445
Query: 635 LS 636
LS
Sbjct: 446 LS 447
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 569 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRT 627
D ++LSGG QR+ +A ++LR+ + + D+ +S LD E + K + L+N +
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN-----KY 189
Query: 628 VIVIAHRL 635
VIV+ H L
Sbjct: 190 VIVVDHDL 197
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 39/191 (20%)
Query: 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDL--DIR 507
IL V L + EV A++G +G+GKST +L Y G+I +DG + +L D R
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 508 WLREKIGFVGQEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 558
R+ + Q P L++ +++ + ++ V EF
Sbjct: 78 -ARKGLFLAFQYPVEVPGVTIANFLRLALQAKL----------------GREVGVAEFWT 120
Query: 559 SLPCGYETLVDDDL---------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 609
+ E L D+ SGG+K+R I + ++ +P +LDE S LD ++
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 610 YVKGVLHALRN 620
V ++A+R
Sbjct: 181 VVARGVNAMRG 191
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 573 LSGGQKQRIAIARAIL-RDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG+ QRI +A + RD + +LDE T L E + VLH L TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL---VDRGNTVI 862
Query: 630 VIAHRLSTIK 639
VI H L IK
Sbjct: 863 VIEHNLDVIK 872
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 555 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYV 611
EF++ + Y TL LSGG+ QRI +A I I +LDE T L +
Sbjct: 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL 505
Query: 612 KGVLHALRNDCKTKRTVIVIAHRLSTIK 639
L LR+ TVIV+ H I+
Sbjct: 506 IKTLKKLRD---LGNTVIVVEHDEEVIR 530
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 573 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 902
Query: 630 VIAHRLSTIK 639
VI H L IK
Sbjct: 903 VIEHNLDVIK 912
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 573 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 600
Query: 630 VIAHRLSTIK 639
VI H L IK
Sbjct: 601 VIEHNLDVIK 610
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 573 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 902
Query: 630 VIAHRLSTIK 639
VI H L IK
Sbjct: 903 VIEHNLDVIK 912
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 43/196 (21%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREKIGFVG 517
+ A E++ +VG +G+GKST LL R + G+ I G PL L ++
Sbjct: 23 VRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL- 572
Q+ + P W + H+ +L+ G L DD L
Sbjct: 80 QQ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 573 -----LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHALRN 620
LSGG+ QR+ +A +L+ +PA +LLLDE ++LD + + +L AL
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL-- 179
Query: 621 DCKTKRTVIVIAHRLS 636
C+ ++ +H L+
Sbjct: 180 -CQQGLAIVXSSHDLN 194
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 573 LSGGQKQRIAIARAILRDPA---ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG+ QR+ +A + + + +LDE T+ L + ++ +L+ + TVI
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD---IRKLLNVINGLVDKGNTVI 920
Query: 630 VIAHRLSTIK 639
VI H L IK
Sbjct: 921 VIEHNLDVIK 930
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 450 VPILNHVCLTIEAN-----EVVAIVGLSGSGKSTF 479
+P +NH+C+ AN +V GLSG+GK+T
Sbjct: 195 MPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTL 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519
+ A E++ +VG +G+GKST + + + G I G PL L ++ Q+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 520 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL--- 572
+ P W + H+ +L+ G L DD L
Sbjct: 82 ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRS 123
Query: 573 ---LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 618
LSGG+ QR+ +A +L+ +PA +LLLD+ ++LD + + +L AL
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 40/178 (22%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREKIGFVG 517
+ A E++ +VG +G+GKST LL R + G+ I G PL L ++
Sbjct: 23 VRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL- 572
Q+ + P W + H+ +L+ G L DD L
Sbjct: 80 QQ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 573 -----LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 618
LSGG+ QR+ +A +L+ +PA +LLLDE ++LD + + +L AL
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519
+ A E++ +VG +G+GKST + + + G I G PL L ++ Q+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 520 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL--- 572
+ P W + H+ +L+ G L DD L
Sbjct: 82 ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRS 123
Query: 573 ---LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 618
LSGG+ QR+ +A +L+ +PA +LLLD+ +LD + + +L AL
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 466 VAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDIRWLREK 512
VAIVG GKST N +L +P D +++IDG +D LR K
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 573 LSGGQKQRIAIA---RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629
LSGG+ QRI +A R R + +LDE T+ L ++ L L TVI
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL---VDAGNTVI 787
Query: 630 VIAHRLSTIKA 640
+ H++ + A
Sbjct: 788 AVEHKMQVVAA 798
>pdb|2R2D|A Chain A, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|B Chain B, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|C Chain C, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|D Chain D, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|E Chain E, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|F Chain F, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
Length = 276
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 112 KPITVWIALSRMWNLIGRDK 131
K I W+A R W+L+GRD+
Sbjct: 154 KDIEAWLATPRNWDLVGRDE 173
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 466 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-----KIGFVGQEP 520
+ +VGL SGK+TFVN++ + GQ D P ++R + + KI +G +P
Sbjct: 25 LTLVGLQYSGKTTFVNVI------ASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 521 QLLQM 525
+ M
Sbjct: 79 RFRSM 83
>pdb|2OBK|A Chain A, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|B Chain B, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|C Chain C, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|D Chain D, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|E Chain E, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|F Chain F, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|G Chain G, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|H Chain H, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6
Length = 103
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 372 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 404
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEVIITYCTQCQWLLRAAWLAQELLSTFSDDLG 38
>pdb|2OKA|A Chain A, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|B Chain B, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|C Chain C, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|D Chain D, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
Length = 104
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 372 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 404
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEIVITYCTQCQWLLRAAWLAQELLSTFADDLG 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,127,495
Number of Sequences: 62578
Number of extensions: 708917
Number of successful extensions: 1982
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 157
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)